Citrus Sinensis ID: 005632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------
Protein Sequence
MELINYGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRLN
Secondary Structure (PSIPRED)
ccccccHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHccHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHcccccccEEEEcccHEHccHHHHHHHHHHHHHHHccccccEEHHHcc
Coil and Loop (DISEMBL)
melinyggyrkKTRKLNkkrgrrkgsknklspgvtkmlGEASLQYAYGNFEQAISLLKEVVrlspnlpetyNTLGLAHSalgnhksaFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKlfpdnvdatKTGAQLFLKCGQTARSIGILEEYLkvhpsdadlSVIDLLVAILMENNAYEKTLQHIEHAQIVrfsgkelplkLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLetnagtdngYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAItllsppkdldsldmnsdksnpwwlNEKIIMKLCHIYrakgmpedfvdAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIynnlptdsilcgirpaapkSELLVAARARKKIQKKEALKEEKKALAKAAgvewhsddtddesqqeafrepplpnllkneenQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAkmaydstdpnhgfdcakyilqlhpyslsAWNCYYKVLSRmgkinskhskHSKFIRYLRAkykdcvppiiisghqftmaSHHQDAARCYLEAYkllpenplinlkrln
Flexible Loop (DISEMBL)
melinyggyrkktrklnkkrgrrkgsknklspgvtkmLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIraepkdisLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVrfsgkelplkLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAitllsppkdldsldmNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALrqkvkvkrrltkgilqqrtkiynnlptdsiLCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKaagvewhsddtddESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMgkinskhskHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYkllpenplinlkrln
Low Complexity Region (SEG)
MELINYGGYrkktrklnkkrgrrkgsknklsPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDarltlasllleeakeeeaitllsppkdldsldMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQkkealkeekkalakaaGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRLN
Disordered region (IsUnstruct)
*************************************LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE***************************PWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAA****LLV*******************************************************ENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLI******
Disordered Region (DISOPRED)
MELINYGGYRKKTRKLN***********KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRLN
Disordered Region (DISEMBL)
MELINYGGYRKKT*****************SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKK********************************REPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRLN
Disordered Region (DISPRO)
MELINYGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRLN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELINYGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVxxxxxxxxxxxxxxxxxxxxxxxxAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	687	2.2.26 [Sep-21-2011]
Q9Y5Q9	886	General transcription fac	yes	no	0.540	0.418	0.236	3e-31
O74458	1006	Transcription factor tau	yes	no	0.470	0.321	0.252	2e-13
P19737	387	TPR repeat-containing pro	yes	no	0.312	0.555	0.234	8e-11
Q3UV71	942	Transmembrane and TPR rep	no	no	0.259	0.188	0.255	1e-07
Q9M8Y0	977	Probable UDP-N-acetylgluc	no	no	0.221	0.155	0.230	6e-07
Q13099	833	Intraflagellar transport	no	no	0.138	0.114	0.25	7e-07
Q61371	824	Intraflagellar transport	no	no	0.144	0.120	0.233	1e-06
Q04737	248	TPR repeat-containing pro	N/A	no	0.160	0.443	0.282	4e-06
Q8IUR5	882	Transmembrane and TPR rep	no	no	0.259	0.201	0.238	6e-06
P33339	1025	Transcription factor tau	yes	no	0.263	0.176	0.216	2e-05

>sp|Q9Y5Q9|TF3C3_HUMAN General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 191/398 (47%), Gaps = 27/398 (6%)

Query: 17  NKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGL 76
            KK  + K  ++KL   +  ++GEA++++A G  E+AI +  E++R +P   E ++TL +
Sbjct: 132 TKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAM 191

Query: 77  AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 136
            +   G+ + +  F +IAAHL+P D+  W +L   ++++ +  QA++   +A++ EP ++
Sbjct: 192 IYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNV 251

Query: 137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN-----VDATKTGAQLFLKCGQTARSIG 191
                 +S Y ++GD++ A + Y +I  L   +     +   +  A+ + +      +I 
Sbjct: 252 RYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSYYEANDVTSAIN 311

Query: 192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE---------- 241
           I++E    H     +  +++   + + N  Y+K L+ I     +    K           
Sbjct: 312 IIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKKTSEEGTSEENK 371

Query: 242 ------------LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTL 289
                       +P+ + VK  +C + L  +E    L   L  +N  D  DL  +VA+  
Sbjct: 372 APENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDMGDLYLDVAEAF 431

Query: 290 MSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID 349
           + +G  NSAL     L  +   +   ++L+ AEC  +L     A   + K +D    ++D
Sbjct: 432 LDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYGKVVDLAPLHLD 491

Query: 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKS 387
           AR++L++L  +  + E+A+  L P  D D+L  +++ +
Sbjct: 492 ARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAA 529

Involved in RNA polymerase III-mediated transcription. Integral, tightly associated component of the DNA-binding TFIIIC2 subcomplex that directly binds tRNA and virus-associated RNA promoters.
Homo sapiens (taxid: 9606)

>sp|O74458|SFC4_SCHPO Transcription factor tau subunit sfc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfc4 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 169/384 (44%), Gaps = 61/384 (15%)

Query: 7   GGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAY-GNFEQAISLLKEVVRLSP 65
            G+RK  RK +K RGR   +    S  V +ML  A+  +A  GNF++A  L +E+VR+  
Sbjct: 106 AGFRK-VRKGHKGRGRVSRADMLPSVEVQQMLSLANHLFAQEGNFDEAQKLAEEIVRIDN 164

Query: 66  NLPETYNTLGLAHSALGNHKSAFD----FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 121
           N+   +  LG  H   GN +   +     ++ AAHL PKD  LW      +       QA
Sbjct: 165 NVIAAWKMLGECHRQRGNGRVNIEKCLIAWMAAAHLKPKDHELWFTCAKLSESLEFWDQA 224

Query: 122 MYYIRQAIRAEPKDIS-LRIHLASFYV---EIGDYEKAAESYEQIQKLFPDNVDATKTGA 177
            Y   +A+ A+P + S L+ ++ +  V   E G  +KAAE ++ + +  P N    K  A
Sbjct: 225 DYCYNRAVSAKPPNKSELKKYIWNRSVLNKEHGSLKKAAEGFKFLLQSSPYNASILKNLA 284

Query: 178 QLFLKCG---QTARSIGILEEYLKVHPSDA------DLSVIDLLVAILMENNAYEKTLQH 228
           ++++K     +  +   I  +Y   +P+        DL  ++L   +L+ ++ +   ++ 
Sbjct: 285 EIYIKIHAPREILKQFEIAWKYFYQYPAPPIGNDIFDLPTLNLYAELLLLDHQWSNLIRL 344

Query: 229 IEHAQIVRFSGKE-------------------------------------LPLKLKVKAG 251
           I    +  F G++                                     LP   + K G
Sbjct: 345 INRG-VRWFRGRKSESFWDEFDDDREWDVDERRREFPNASEEHTNKEAYLLPHLFRTKLG 403

Query: 252 ICYLRLGNMEKAEILFADLQWKN-AIDHA-DLITEVADTLMSLGHSNSALKYYHFLETNA 309
           I  L+ G + +AE+ F+ +  KN   D+A  ++ ++A   M +   + AL+Y+  +  + 
Sbjct: 404 IARLKTGELPEAELHFSVI--KNLPPDYAWGMLYDIAKAYMDIERLDLALEYFVLICNHE 461

Query: 310 GTDNGYLYLKLAECYLSLKERAHA 333
              N  L+  +  CYL LKE  HA
Sbjct: 462 PAQNIGLWYNMGVCYLELKEYEHA 485

TFIIIC mediates tRNA and 5S RNA gene activation by binding to intragenic promoter elements. Upstream of the transcription start site, TFIIIC assembles the initiation complex TFIIIB-TFIIIC-tDNA, which is sufficient for RNA polymerase III recruitment and function. Part of the tauA domain of TFIIIC that binds boxA DNA promoter sites of tRNA and similar genes. Sfc4 is the TFIIIB assembling subunit of TFIIIC.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P19737|Y425_SYNP2 TPR repeat-containing protein SYNPCC7002_A0425 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0425 PE=4 SV=2

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 11/226 (4%)

Query: 30  LSPGVT-------KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG 82
           LSP VT        +L + + Q    NF QA+   ++ + L  N    +  LG A S LG
Sbjct: 52  LSPSVTWANPQLNALLEQGNEQLTNRNFAQAVQHYRQALTLEANNARIHGALGYALSQLG 111

Query: 83  NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL 142
           N+  A   Y  A  L   ++  +  L     Q GD   A+   ++A + +P +++  + L
Sbjct: 112 NYSEAVTAYRRATELEDDNAEFFNALGFNLAQSGDNRSAINAYQRATQLQPNNLAYSLGL 171

Query: 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202
           A+     GDY++A  +Y ++     +N  A +      L+ G+   +  +  + L+  P+
Sbjct: 172 ATVQFRAGDYDQALVAYRKVLAKDSNNTMALQNSLTSLLQLGRNQEAAVLFPDLLRQRPN 231

Query: 203 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKV 248
           DA+L +   +    +  N  ++ +  +E A+  R S ++  ++++V
Sbjct: 232 DAELRIKAAVTWFGL--NDRDQAIAFLEEAR--RLSTRDSAMQIRV 273

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus GN=Tmtc1 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 2/180 (1%)

Query: 51  EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110
           E+AI LLKE ++  P+  + Y++L    +     K A D Y       P  S L      
Sbjct: 625 EEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAV 684

Query: 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170
           F V  G   +A+ + +QAI+  P      ++L   Y  +G+  KA E Y +  K+     
Sbjct: 685 FLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVARTAE 744

Query: 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV-IDLLVAILMENNAYEKTLQHI 229
             +  GA L+   G+   ++ +  E + + PS  +L + +  ++A++ +    EK   HI
Sbjct: 745 VLSPLGA-LYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEKITSHI 803

Mus musculus (taxid: 10090)

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 73/165 (44%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
            ++ Y    ++  I+  +E +R+ P   E Y  +  A    G+   A  +Y+IA  L P 
Sbjct: 94  GAIYYQLQEYDMCIARNEEALRIQPQFAECYGNMANAWKEKGDTDRAIRYYLIAIELRPN 153

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
            +  W  L +  ++KG  ++A    +QA+   P  +    +L +     G   +A   Y 
Sbjct: 154 FADAWSNLASAYMRKGRLSEATQCCQQALSLNPLLVDAHSNLGNLMKAQGLIHEAYSCYL 213

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
           +  ++ P    A    A LF++ G   R++   +E +K+ P+  D
Sbjct: 214 EAVRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPAFPD 258

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q13099|IFT88_HUMAN Intraflagellar transport protein 88 homolog OS=Homo sapiens GN=IFT88 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 66/136 (48%)

Query: 49  NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL 108
           N  QAI  L +VV + P  P+  + LG  +   G+   AF +Y  +    P +  + + L
Sbjct: 576 NPSQAIEWLMQVVSVIPTDPQVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWL 635

Query: 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168
             + +      +A+ Y  +A   +P  +  ++ +AS +   G+Y+KA ++Y+   + FP+
Sbjct: 636 GAYYIDTQFWEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPE 695

Query: 169 NVDATKTGAQLFLKCG 184
           NV+  +   +L    G
Sbjct: 696 NVECLRFLVRLCTDLG 711

Involved in primary cilium biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q61371|IFT88_MOUSE Intraflagellar transport protein 88 homolog OS=Mus musculus GN=Ift88 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 67/133 (50%)

Query: 52  QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111
           QAI  L +++ + P   +  + LG  + + G+   AF +Y  +    P +  + + L  +
Sbjct: 570 QAIEWLMQLISVVPTDSQALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAY 629

Query: 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171
            +      +A+ Y  +A   +P  +  ++ +AS +   G+Y+KA ++Y++I + FP+NV+
Sbjct: 630 YIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKEIHRKFPENVE 689

Query: 172 ATKTGAQLFLKCG 184
             +   +L    G
Sbjct: 690 CLRFLVRLCTDIG 702

Involved in primary cilium biogenesis.

Mus musculus (taxid: 10090)

>sp|Q04737|Y751_SYNY3 TPR repeat-containing protein slr0751 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0751 PE=4 SV=1

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 60/138 (43%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           GN+ +A+ L   V+ LSP+ PET+   GLA   LGN   A   Y  +  L       +  
Sbjct: 75  GNYAEAVELFSVVLNLSPDSPETHYNRGLAWERLGNVDQAIADYGRSIALDRYYIPPYIN 134

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                 Q+ D   A+    QAI  +P       + A+ Y ++G Y +A   Y ++  L P
Sbjct: 135 RGNLYSQQQDHHTAIQDFTQAITYDPNRYKAYYNRANSYFQLGQYAQAIADYNRVLVLRP 194

Query: 168 DNVDATKTGAQLFLKCGQ 185
           D ++A         + GQ
Sbjct: 195 DYINAIYNRGLAHFQAGQ 212

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens GN=TMTC1 PE=1 SV=3

 Score = 53.5 bits (127), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 2/180 (1%)

Query: 51  EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110
           E+AI+LLK+ ++  P   + Y++L    +     K A + Y       P  S L      
Sbjct: 565 EEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGV 624

Query: 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170
           F V  G   +A+ + +QAI+  P      ++L   Y  +G+   A E Y++  ++     
Sbjct: 625 FLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAE 684

Query: 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV-IDLLVAILMENNAYEKTLQHI 229
             +  GA L+   G+   ++ I +E   + PS  +L + +  ++A++ +    EK   HI
Sbjct: 685 ILSPLGA-LYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHI 743

Homo sapiens (taxid: 9606)

>sp|P33339|TFC4_YEAST Transcription factor tau 131 kDa subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFC4 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 21  GRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA 80
           GR++  +  L P V ++L +A+  +   + + A  L  EV++        Y TLG  +  
Sbjct: 116 GRQRKER-VLDPEVAQLLSQANEAFVRNDLQVAERLFNEVIKKDARNFAAYETLGDIYQL 174

Query: 81  LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 140
            G      + + +AAHL+  D   WK +   +       QA+Y   + I   P +     
Sbjct: 175 QGRLNDCCNSWFLAAHLNASDWEFWKIVAILSADLDHVRQAIYCFSRVISLNPMEWESIY 234

Query: 141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200
             +  Y + G   +A + ++++    P + +  +  A L++   +   SI   E Y+KV 
Sbjct: 235 RRSMLYKKTGQLARALDGFQRLYMYNPYDANILRELAILYVDYDRIEDSI---ELYMKVF 291

Query: 201 PSDAD 205
            ++ +
Sbjct: 292 NANVE 296

TFIIIC mediates tRNA and 5S RNA gene activation by binding to intragenic promoter elements. Upstream of the transcription start site, TFIIIC assembles the initiation complex TFIIIB-TFIIIC-tDNA, which is sufficient for RNA polymerase III recruitment and function. Part of the tauA domain of TFIIIC that binds boxA DNA promoter sites of tRNA and similar genes. TFC4 is the TFIIIB-assembling subunit of TFIIIC and essential for viability.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	687
297736093	915	unnamed protein product [Vitis vinifera]	0.950	0.713	0.584	0.0
356544401	919	PREDICTED: general transcription factor	0.937	0.700	0.560	0.0
449458227	927	PREDICTED: transcription factor tau subu	0.981	0.727	0.554	0.0
357474517	937	Transcription factor tau subunit sfc4 [M	0.981	0.719	0.543	0.0
356540992	929	PREDICTED: general transcription factor	0.905	0.669	0.547	0.0
357473897	958	Transcription factor tau subunit sfc4 [M	0.982	0.704	0.525	0.0
255556705	684	o-linked n-acetylglucosamine transferase	0.797	0.801	0.578	0.0
115485047	900	Os11g0266800 [Oryza sativa Japonica Grou	0.957	0.731	0.435	1e-160
449476653	627	PREDICTED: LOW QUALITY PROTEIN: general	0.717	0.786	0.551	1e-155
357115318	901	PREDICTED: general transcription factor	0.965	0.735	0.430	1e-151

>gi|297736093|emb|CBI24131.3| unnamed protein product [Vitis vinifera]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/706 (58%), Positives = 539/706 (76%), Gaps = 53/706 (7%)

Query: 27  KNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKS 86
           KNKLSP VT+ LGEA+L YA+G +E+AI +LKEVVRL+PNLP+ Y+T GL ++A G+ K 
Sbjct: 86  KNKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRLAPNLPDAYHTFGLVYNAFGDKKR 145

Query: 87  AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY 146
           A +FY++AAHL+PKDS+LWK L+T+++++G+T QA Y + +AI A+P+DISLR H AS Y
Sbjct: 146 ALNFYMLAAHLTPKDSSLWKLLVTWSIEQGNTGQARYCLSKAITADPEDISLRFHRASLY 205

Query: 147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 206
           VE+G+Y+KAAESYEQI +LFP+NV+A KTGA+L+ KCGQ  RS+ ILE+Y+K HP+ ADL
Sbjct: 206 VELGEYQKAAESYEQISQLFPENVEAPKTGAKLYKKCGQVERSVSILEDYIKDHPTKADL 265

Query: 207 SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL 266
           S++D+L A+ MENN +++ LQHIEHAQ++  SGK+LPL L +KAGIC++ LGN+EKAE L
Sbjct: 266 SIVDMLAAVCMENNVHDRALQHIEHAQLLYCSGKDLPLHLTIKAGICHIHLGNIEKAEAL 325

Query: 267 FADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS 326
           F+ LQ +   DHA LI+EVAD+ MSL   + ALKYY  LE N G DNG+L+LK+A+CYLS
Sbjct: 326 FSVLQ-RETCDHAGLISEVADSFMSLELYDFALKYYLMLEGNVGRDNGFLHLKIAQCYLS 384

Query: 327 LKERAHAIMFFYK----------------------------------------------A 340
           LKER  AI FFYK                                               
Sbjct: 385 LKERVQAIPFFYKENQEADRLAKRGASIPIKCSEDFFFSLGSPCKLMIVILFLVSIFFYT 444

Query: 341 LDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS-LDMNSDKSNPWWLNEKIIMK 399
           LD  +DNIDARLTLA+LLLE AKE+EAI LLSPPK+L+S +D NSD+  PWWLN K+ +K
Sbjct: 445 LDVLQDNIDARLTLATLLLEGAKEDEAILLLSPPKNLESTVDPNSDEFQPWWLNGKVKLK 504

Query: 400 LCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKV--KVKRRLTKGILQQRTKIYNNLPT 457
           L HIYR+KGM ++FVDAIFPLV ESL VE L+QKV  +VK+RL+K +L +R K+ ++  +
Sbjct: 505 LSHIYRSKGMSDEFVDAIFPLVRESLFVETLKQKVTVRVKKRLSKSVLFERVKVLDDHHS 564

Query: 458 DSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEA 517
           D++  G RP A  S+L  A+RA+K +QKK   KEE+KA A AAGV+W+SD++DDES ++ 
Sbjct: 565 DNVFHGFRPMASTSDLSKASRAKKLLQKKATRKEERKAAAMAAGVDWYSDESDDESPEQK 624

Query: 518 FREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRS 577
            REPPLPNLLK+EE+  LI+DLCKALASL++Y EA +IINL++RLAYNI+P+EKKEELRS
Sbjct: 625 LREPPLPNLLKDEEHHHLILDLCKALASLRKYWEALDIINLTLRLAYNIMPIEKKEELRS 684

Query: 578 LGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYL 637
           LGA++AY+ TDP HGFD  KYI+Q HP+SL+AWNCYYKV+SR+    +++SKHSK +  +
Sbjct: 685 LGAQIAYNITDPKHGFDYVKYIVQQHPHSLAAWNCYYKVISRL---ENRYSKHSKLLHSM 741

Query: 638 RAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINL 683
           R ++KDCVPPI+I GHQFTM S HQ AA+ YLEAYKL+PENPLINL
Sbjct: 742 RVRHKDCVPPIVIFGHQFTMISQHQIAAKEYLEAYKLMPENPLINL 787

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544401|ref|XP_003540640.1| PREDICTED: general transcription factor 3C polypeptide 3-like [Glycine max]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/665 (56%), Positives = 498/665 (74%), Gaps = 21/665 (3%)

Query: 25  GSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH 84
           GSKN++ P +T+M G+A+  YA G++++A ++L EV+RL+PNL E+Y+TLGL +++L ++
Sbjct: 137 GSKNRVDPKLTQMQGDATFHYACGDYDRAKAVLCEVIRLAPNLHESYHTLGLVYTSLQDY 196

Query: 85  KSAFDFYVIAAHLSPKDSALWKQLLTFAV------QKGDTAQAMYYIRQAIRAEPKDISL 138
           K A   Y+IAAHL PK+S LWK + T+++      ++G   QA Y + +AI+A+PKD++L
Sbjct: 197 KRAMALYLIAAHLDPKESPLWKTIFTWSITFFKCREQGYVDQAGYCLLKAIKADPKDVTL 256

Query: 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK 198
           R HLA  Y E+G Y+KAA +YEQ+ KL  +N+DA K  A+ + KCGQ   SI ILE+Y+K
Sbjct: 257 RFHLARLYAELGHYQKAAVTYEQVHKLCCENIDALKAAAKFYKKCGQVEYSIQILEDYIK 316

Query: 199 VHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258
             P  A++SV+DLL  +LME  A+++ LQHIEHAQ V  + KELPL LK+KAGIC+  LG
Sbjct: 317 SQPDGANVSVVDLLGTVLMETKAHDRALQHIEHAQTVN-ARKELPLNLKIKAGICHAHLG 375

Query: 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYL 318
           NME+A+ LF DL+ +NA  H DL+T+VAD+LM L H N AL YY  LE N   +NG LYL
Sbjct: 376 NMERAQALFNDLKPENASKHIDLVTKVADSLMGLEHYNPALNYYLMLEGNIEKENGLLYL 435

Query: 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLD 378
           K+A CY+SLKER+ AI+F+ KAL+  +D++DAR+TLASLLLEEAKE+EAI+LLSPPKD D
Sbjct: 436 KIARCYMSLKERSQAILFYSKALETLQDDVDARITLASLLLEEAKEDEAISLLSPPKDSD 495

Query: 379 SLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKR 438
             +  S+KSN WW + +I +KLC+IY  +G  +DFVD IFPLV ESL V  LRQK K K+
Sbjct: 496 FGEAPSEKSNRWWADIRIKLKLCNIYWNRGTLDDFVDTIFPLVRESLYVATLRQKGKSKK 555

Query: 439 RLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAK 498
           RL+K  L +R ++ +    D++  G RP A  S+LL A+RA+K +QKK   KE++KA A 
Sbjct: 556 RLSKRDLVERVRVLDGPEKDNVFRGFRPVAAPSDLLKASRAKKLLQKKAMEKEKRKAEAL 615

Query: 499 AAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINL 558
           A+G++W  +           REPPL NLLK+EE+  LIIDLCKALASLQRY EA EIINL
Sbjct: 616 ASGIDWLKN-----------REPPLCNLLKDEEHHQLIIDLCKALASLQRYWEALEIINL 664

Query: 559 SMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLS 618
           S+RLA+  L  EKKEELRSLGA+MAY++TDP HGFDC KYI+Q HP+ ++AWNCYYKV+S
Sbjct: 665 SLRLAHTSLSTEKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPHGVAAWNCYYKVIS 724

Query: 619 RMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPEN 678
           R+    ++ ++H KF+R ++ K+ DCVPPI+ISGHQFT+ SHHQDAAR YLEAYKLLPEN
Sbjct: 725 RL---ENRDTRHYKFVRGMQGKFVDCVPPILISGHQFTICSHHQDAARKYLEAYKLLPEN 781

Query: 679 PLINL 683
           PL+NL
Sbjct: 782 PLVNL 786

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458227|ref|XP_004146849.1| PREDICTED: transcription factor tau subunit sfc4-like [Cucumis sativus]

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/684 (55%), Positives = 506/684 (73%), Gaps = 10/684 (1%)

Query: 1   MELINYGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEV 60
           +E +NYG  RK   K  KKRGRRKGSK KL+  VTK+LG+A+L YA G  E+AISLL++V
Sbjct: 126 LEAMNYGSRRK--LKEPKKRGRRKGSKKKLNRDVTKLLGDATLCYAQGEHEKAISLLRQV 183

Query: 61  VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ 120
           V  +P+LP++Y+TLGL ++A+G+   A  FY++AAHL PKDS+LWK L ++++ +GD  Q
Sbjct: 184 VLRAPDLPDSYHTLGLVYNAIGDDVKAMGFYMLAAHLMPKDSSLWKLLFSWSIDRGDIDQ 243

Query: 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLF 180
           A Y + +AI+AEP DI+L  H AS Y+E GD EKAAE+Y+QI +    NV+A  TGA+L+
Sbjct: 244 ASYCLSKAIKAEPDDINLLFHRASLYLERGDCEKAAETYDQIHQQCLGNVEALMTGAKLY 303

Query: 181 LKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK 240
            KCG   R+I ILE+Y+K HPS+ADL V+DLL ++ M +  + K L+ IEHA  V  +G 
Sbjct: 304 QKCGHLERAICILEDYIKGHPSEADLDVVDLLASLYMGSKEFSKALERIEHADRVYCAGN 363

Query: 241 ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK 300
           ELPL L  KAGIC+  LG++EKAE LFA+L+ +   DH++L+ EVAD+LMSL H + ALK
Sbjct: 364 ELPLNLTTKAGICHAHLGDLEKAECLFANLRRETTYDHSNLMIEVADSLMSLKHYSWALK 423

Query: 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 360
           YY   E      NG LYLK+AECYLS  ER  AI+FFYK L   EDNI+ARLTLASLLLE
Sbjct: 424 YYLMSEEV----NGILYLKIAECYLSTNEREQAIVFFYKVLQHVEDNINARLTLASLLLE 479

Query: 361 EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL 420
           EA+++EAI+LLSPPKD +    +S K  PWWLNEK+ +KLCHIYR +G+ E+FV+ IFPL
Sbjct: 480 EARDKEAISLLSPPKDSNPTSSSSSKLKPWWLNEKVKLKLCHIYRTRGLLENFVEVIFPL 539

Query: 421 VCESLCVEALRQKVKV-KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARA 479
           V ESL +E L++K+KV K++L + +L +R K+ +   T ++  G +P APKS+L  A+RA
Sbjct: 540 VRESLYIETLQEKIKVNKKKLPRRVLLERVKVLDGRETGNLFRGFKPVAPKSDLTKASRA 599

Query: 480 RKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDL 539
           ++ +QK+E +KEEKKA A AAGV    DD DDE      RE PLPNLLK EE   LI+DL
Sbjct: 600 KRLLQKRERIKEEKKAKALAAGVNLSYDDLDDEPALRMHRESPLPNLLKEEEYHILIVDL 659

Query: 540 CKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYI 599
           CKALASL R  EA EII+L+++LA+N L +E+KEEL+ LGA++A+ ST   HGF+ AK++
Sbjct: 660 CKALASLGRCSEALEIISLTLKLAFNSLSMERKEELQLLGAQLAFSSTGTMHGFNFAKHV 719

Query: 600 LQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMAS 659
           ++ +PYS+SAWNCYYKV S +    ++ S+H K +  +++KYKDC PP II+GHQFT  S
Sbjct: 720 VKQYPYSISAWNCYYKVASCL---TNRDSRHCKLLNSMQSKYKDCAPPYIIAGHQFTTIS 776

Query: 660 HHQDAARCYLEAYKLLPENPLINL 683
           HHQDAAR YLEAYK++P++PLINL
Sbjct: 777 HHQDAARKYLEAYKIMPDSPLINL 800

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474517|ref|XP_003607543.1| Transcription factor tau subunit sfc4 [Medicago truncatula] gi|355508598|gb|AES89740.1| Transcription factor tau subunit sfc4 [Medicago truncatula]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/682 (54%), Positives = 500/682 (73%), Gaps = 8/682 (1%)

Query: 2   ELINYGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVV 61
           EL+N G  ++  +K +KKRGR+KGSK KL   +++M G+A + Y    ++ AI +L EVV
Sbjct: 136 ELMNLGHGKRSKKKRSKKRGRQKGSKKKLDEKISQMFGDALMHYTSRRYDMAIDVLHEVV 195

Query: 62  RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 121
           RL PNLP+ Y+ LG  H A+G+H++   FY+I AHL+PKDS+LW++L  +++++GD  QA
Sbjct: 196 RLEPNLPDPYHILGAVHGAIGDHENEMGFYMIYAHLTPKDSSLWERLFVWSIKQGDAGQA 255

Query: 122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181
            Y I +AI+A+P+DISLR H A  Y E  +Y+KAAE+YEQI +L  ++ DA K  A+ + 
Sbjct: 256 SYCISKAIKADPQDISLRRHQALLYAESQNYQKAAEAYEQIHQLCRED-DALKEAAKFYR 314

Query: 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE 241
           KCGQ  RSI ILE+YLK  P   + SV+DLL AILME  A+++ LQ IE +Q+V   GKE
Sbjct: 315 KCGQVERSICILEDYLKSKPDGVNASVVDLLGAILMEIKAHDRALQFIEQSQVV---GKE 371

Query: 242 LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 301
           LPL LKVKAGIC++ LGNME A++ F DL+ +NA  H +LITEVAD+LM LGH NSAL Y
Sbjct: 372 LPLNLKVKAGICHVHLGNMEIAQVFFNDLKPENASKHVELITEVADSLMGLGHYNSALNY 431

Query: 302 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE 361
           +  LE N+  +NG+LYLK+A CY SL+ER  AI+ FYKAL+  +D+++AR+ LASLL+EE
Sbjct: 432 FKMLEGNSKNENGFLYLKIARCYRSLEERKQAIISFYKALETLQDDVEARVALASLLVEE 491

Query: 362 AKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV 421
            KE EAI+LLSPPKD DS + +S+KSN WW++ +I +KLC+I++ +GM  DFV+   PLV
Sbjct: 492 GKENEAISLLSPPKDSDSGEAHSEKSNRWWVDVRIKLKLCNIFQIRGMLNDFVNVSLPLV 551

Query: 422 CESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARK 481
            ESL V A R+K + KRRL+   L++R ++ N   T+S+  G RP    S+L  A+RA+K
Sbjct: 552 HESLHVPAPRRKGQSKRRLSIRDLEKRVRVLNVPETNSVFRGFRPITSSSDLSKASRAKK 611

Query: 482 KIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCK 541
            + KK   KE KKA A A+G++W SDD+DDE  QE   + PL NL K+E    LIIDLC 
Sbjct: 612 LLLKKAIEKERKKAEAVASGIDWLSDDSDDEP-QEPNTDSPLCNLHKDEGYHQLIIDLCN 670

Query: 542 ALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQ 601
           ALASLQRY EA EIINL++RLA+  L  EK E+LRSL  +MAY++TDP  GFDC K ++Q
Sbjct: 671 ALASLQRYSEALEIINLTLRLAHTSLSTEKNEKLRSLEVQMAYNTTDPKQGFDCVKDMVQ 730

Query: 602 LHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHH 661
            H +S++AWNCYYKV+SR+    ++ ++H KF+R ++ K+ DCVPPI+IS HQFT+ SHH
Sbjct: 731 QHAHSVAAWNCYYKVVSRL---ENRDTRHDKFLRSMQGKFVDCVPPILISAHQFTLCSHH 787

Query: 662 QDAARCYLEAYKLLPENPLINL 683
           QDAAR YLEAYKLLPENPL+NL
Sbjct: 788 QDAARKYLEAYKLLPENPLVNL 809

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540992|ref|XP_003538968.1| PREDICTED: general transcription factor 3C polypeptide 3-like [Glycine max]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/668 (54%), Positives = 477/668 (71%), Gaps = 46/668 (6%)

Query: 18  KKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLA 77
           KKRGRRKGSKNK  P +T+MLG+A+  YA G+++QA ++L+EV+RL+PNL E+Y+TLGL 
Sbjct: 172 KKRGRRKGSKNKDDPKLTQMLGDATFHYARGDYDQAKAVLREVIRLAPNLHESYHTLGLF 231

Query: 78  HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF--AVQKGDTAQAMYYIRQAIRAEPKD 135
                                        +L TF    ++G   QA Y + +AI+A+PKD
Sbjct: 232 -----------------------------ELRTFFKCREQGYVDQAGYCLLKAIKADPKD 262

Query: 136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEE 195
           ++LR HLA  Y E+G Y+KAA +YEQ+ KL  +N+DA K  A+ + KCGQ   S+ ILE+
Sbjct: 263 VTLRCHLARLYAELGHYQKAAVTYEQVHKLCCENIDALKAAAKFYKKCGQVEYSVRILED 322

Query: 196 YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL 255
           Y+K  P  A+ SV+DLL  ILME  A+++ LQHIEHAQ V  + KELPL LK+KAGIC+ 
Sbjct: 323 YIKSQPDVANASVVDLLGTILMETKAHDRALQHIEHAQAVN-ARKELPLNLKIKAGICHA 381

Query: 256 RLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGY 315
            LGN+E A++LF DL+ +NA  H DL+T VAD+LM L H N AL YY  LE N   +NG 
Sbjct: 382 HLGNLEMAQVLFNDLKPENASKHIDLVTGVADSLMGLEHYNPALNYYLMLEGNVEKENGL 441

Query: 316 LYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK 375
           LYLK+A CY+SLKER+ AI+F+ KAL+  +D++DAR+TLASLLLEE KE+EAI LLSPPK
Sbjct: 442 LYLKIARCYMSLKERSQAILFYSKALETLQDDVDARITLASLLLEEGKEDEAIFLLSPPK 501

Query: 376 DLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVK 435
           D D  +  S KSN WW + +I +KLC+IY  +G  +DFVD IFPL+ ESL V   RQK K
Sbjct: 502 DSDFGEAPSGKSNRWWFDIRIKLKLCNIYWNRGTLDDFVDTIFPLIRESLYVATCRQKGK 561

Query: 436 VKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKA 495
            K+RL+K  L +R ++ +    D++  G RP A  S+LL A+RA+K +QKK   KE++KA
Sbjct: 562 SKKRLSKRDLVERVRVLDGPEKDNVFRGFRPVAAPSDLLKASRAKKLLQKKAIEKEKRKA 621

Query: 496 LAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEI 555
            A A+G++W  +           REPPL NLLK+EE+  LIIDLCKALASLQRY EA EI
Sbjct: 622 EALASGIDWLKN-----------REPPLCNLLKDEEHHQLIIDLCKALASLQRYWEALEI 670

Query: 556 INLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYK 615
           INL +RLA+  L  EKKEELRSLGA+MAY++TDP HGFDC KYI+Q HP+S++AWNCYYK
Sbjct: 671 INLFLRLAHTSLSTEKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPHSVAAWNCYYK 730

Query: 616 VLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLL 675
           V+SR+    ++ ++H KF+R ++ K+ DCVPPI+ISGHQFT+ SHHQDAAR YLEAYKLL
Sbjct: 731 VISRL---ENRDTRHYKFVRGMQGKFVDCVPPILISGHQFTICSHHQDAARKYLEAYKLL 787

Query: 676 PENPLINL 683
           PENPL+NL
Sbjct: 788 PENPLVNL 795

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473897|ref|XP_003607233.1| Transcription factor tau subunit sfc4 [Medicago truncatula] gi|355508288|gb|AES89430.1| Transcription factor tau subunit sfc4 [Medicago truncatula]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/691 (52%), Positives = 492/691 (71%), Gaps = 16/691 (2%)

Query: 2   ELINYGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVV 61
           E IN+G  ++  +K +KKRGR+KGSK KL   +++MLG+A + YA G  + AIS+L EVV
Sbjct: 135 EFINFGEGKRPRKKRSKKRGRQKGSKKKLDEKISQMLGDAHVHYANGRHKMAISVLHEVV 194

Query: 62  RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA 121
           RL PNLP++Y+TLGL H A+G+H++   FY+I AHL+PKD  LWK L  +++ + D  QA
Sbjct: 195 RLEPNLPDSYHTLGLVHGAIGDHENEMGFYMITAHLTPKDPTLWKTLYVWSIGQDDIGQA 254

Query: 122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181
            Y I +AI+A+P+D SLR H A  Y E  +Y+KAAE+YEQ+ +L  +NVDA K  A+ + 
Sbjct: 255 SYCISKAIKADPQDSSLRSHQAMLYAESQNYQKAAEAYEQVYQLCRENVDALKAAAKYYQ 314

Query: 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE 241
           KCGQ  RSI ILE+YLK  P   + SV+DLL AILME  A+++ LQ+IE +Q+V   GKE
Sbjct: 315 KCGQVERSICILEDYLKNKPDGVNASVVDLLGAILMEIKAHDRALQYIEQSQVV---GKE 371

Query: 242 LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 301
           LPL LKVKAGIC++ LGN+E A++ F DL+ +NA  H + ITEVAD+ M LGH NSAL Y
Sbjct: 372 LPLNLKVKAGICHVHLGNLEMAQVFFNDLKPENASKHVESITEVADSFMGLGHYNSALNY 431

Query: 302 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE 361
           +  LE N+  ++G LYLK+A CY +L ER  AI+ FY  L+  +D+++AR+TLASLL+EE
Sbjct: 432 FKMLEGNSKNEDGLLYLKIARCYQALGERKQAIISFYIVLETLQDDVEARITLASLLVEE 491

Query: 362 AKEEEAITLLSPPKD--LDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP 419
            KE EAI+LLSPPKD   DS + +S+K N WW++ +I +KLC+I++ +GM  DFVD  FP
Sbjct: 492 GKENEAISLLSPPKDSGTDSGEAHSEKPNRWWIDVRIKLKLCNIFQIRGMLTDFVDVCFP 551

Query: 420 LVCESLCVEALRQKVKV-------KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSE 472
           LV ESL V   ++K K+       K+RL+   L +R +      TDS+  G +  A  S+
Sbjct: 552 LVRESLNVATPKRKGKLLLPGKSKKKRLSTSDLLKRVEKLAAPETDSVFRGFKAVATSSD 611

Query: 473 LLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEEN 532
            L A+RA+K +++K   KE++KA A A+G++W SDD+DDE Q+    E PL NL K+E  
Sbjct: 612 RLKASRAKKALEEKAIEKEKRKAEAAASGIDWRSDDSDDELQKPN-TESPLCNLHKDEGY 670

Query: 533 QCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHG 592
             L+IDLC ALASLQ Y EA EIINLS++LA+  L  EK E+LRSLG +MAY + DP  G
Sbjct: 671 HQLLIDLCNALASLQMYREALEIINLSLKLAHISLSAEKNEKLRSLGVQMAYSTPDPKQG 730

Query: 593 FDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISG 652
           FDC K I++ H  S++AWNCYYKV+SR+    ++ ++H KF+R ++ KY D VPPI+IS 
Sbjct: 731 FDCVKGIVKQHAQSVAAWNCYYKVISRL---ENRDTRHDKFLRDMQEKYVDSVPPILISA 787

Query: 653 HQFTMASHHQDAARCYLEAYKLLPENPLINL 683
           HQFT+ SHHQDAAR YLEAYKLLP+NPL+NL
Sbjct: 788 HQFTLCSHHQDAARKYLEAYKLLPKNPLVNL 818

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556705|ref|XP_002519386.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] gi|223541453|gb|EEF43003.1| o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/570 (57%), Positives = 440/570 (77%), Gaps = 22/570 (3%)

Query: 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173
           ++GD A+A  Y+ +AIRA+P DISLR   A  YV++G+++KAAESY+QI ++  ++++  
Sbjct: 5   ERGDVARASMYLAKAIRADPNDISLRKRQALLYVKLGNFQKAAESYDQISQICSEDIEVL 64

Query: 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 233
           K  A+L+ +CGQ+ RS+ ILE+Y   HPS AD SVIDLL A+LM+ NAY K LQHIEHA 
Sbjct: 65  KIAAELYSECGQSERSVSILEKYFDGHPSGADFSVIDLLAAVLMDTNAYNKALQHIEHAH 124

Query: 234 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLG 293
           +V +SGKE+PL+LK+KAGIC++ L N+EKAE+LF++L+ + ++ HA+LI +VA+  M+L 
Sbjct: 125 LVYYSGKEMPLQLKIKAGICHIHLKNVEKAEMLFSNLELE-SVSHAELIMDVANAYMNLE 183

Query: 294 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353
           H   ALKYY  LE+NAG +NGY++LK+A+CYLSLK+R  A MFFYKAL   ED++D RL 
Sbjct: 184 HLQLALKYYLILESNAGGENGYIHLKIAQCYLSLKDREKATMFFYKALHALEDSVDCRLA 243

Query: 354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDF 413
           LASL+LE+ KE+EAI+LL+PP+ LDS++++SDK  PWWL+ KI ++LCHIYR++GM EDF
Sbjct: 244 LASLILEDGKEDEAISLLAPPEGLDSINLSSDKHKPWWLDGKIKLRLCHIYRSRGMLEDF 303

Query: 414 VDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSEL 473
           ++ I PLV ESL V++LRQ  KVKRRLT  +L++RTKI +    + +  G+RP A +S+L
Sbjct: 304 INTILPLVRESLYVKSLRQ--KVKRRLTTSVLRKRTKILDVGEINDVFGGVRPLASRSDL 361

Query: 474 LVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQ 533
           L A RARK +QK    KEE+K  A+AAG++ H             R PPLP+ LK+EE+ 
Sbjct: 362 LKATRARKMLQK----KEEEKVEARAAGIDCH------------IRIPPLPDFLKDEEHH 405

Query: 534 CLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGF 593
            LIIDLCKAL SLQRY EA EIINL+ RLAY  LP EKKEEL+SL A+++Y +TDP HGF
Sbjct: 406 NLIIDLCKALQSLQRYWEALEIINLTRRLAYKNLPNEKKEELQSLAAQISYKTTDPKHGF 465

Query: 594 DCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGH 653
           DC + I+  HPYSL+AWNCYYK+  R+GK    +S+H+KF+RY+R+K+ DCVPPIII GH
Sbjct: 466 DCVRSIVVQHPYSLAAWNCYYKITLRLGK---NYSRHAKFLRYMRSKHNDCVPPIIIYGH 522

Query: 654 QFTMASHHQDAARCYLEAYKLLPENPLINL 683
           QFT+ASHHQDAAR YL AYKLLPE+PLINL
Sbjct: 523 QFTVASHHQDAAREYLAAYKLLPESPLINL 552

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485047|ref|NP_001067667.1| Os11g0266800 [Oryza sativa Japonica Group] gi|108864222|gb|ABA92586.2| TPR Domain containing protein, expressed [Oryza sativa Japonica Group] gi|113644889|dbj|BAF28030.1| Os11g0266800 [Oryza sativa Japonica Group]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 295/678 (43%), Positives = 435/678 (64%), Gaps = 20/678 (2%)

Query: 6   YGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP 65
           +G  RK+  K  +KRGR+KG++NK SP VTK LG+A+L +    F++AI +L EVVR++P
Sbjct: 114 FGLRRKRRSKDARKRGRKKGTRNKYSPEVTKKLGDATLLFTESRFKEAIPILHEVVRIAP 173

Query: 66  NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI 125
           NL  +Y+ LG  +   G    A +F ++AA++SPKD  LWK+L+  A++K D A A + +
Sbjct: 174 NLSNSYHLLGSIYKECGELDKAINFLMLAAYVSPKDVFLWKKLIDMALKKEDAALARHCV 233

Query: 126 RQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ 185
            +A+RA+P+D+ L+   A+ Y  + DY+KA E YEQI +++P N+ A K  AQ++  CGQ
Sbjct: 234 LKAMRADPEDVGLKFDCANIYRALHDYQKAGEIYEQIVRIYPSNIVARKAAAQMYRDCGQ 293

Query: 186 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK 245
             ++I +LE+Y+    ++ D + +DLL+++ + NNAY + L+ IE A IV  S   LP++
Sbjct: 294 IDKAINLLEDYVNAQTTNIDSNHLDLLISLYLRNNAYNEALRLIERAHIVFGSQHNLPVQ 353

Query: 246 LKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL 305
           L+ KA IC+  LG+M+ AE+   ++  + + D+ D+I EVA TL +LG    A+K+Y  +
Sbjct: 354 LQAKAVICHAYLGDMKHAEVFLQNVHLERSKDNTDVIKEVASTLENLGQYEYAIKFYLMI 413

Query: 306 ETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEE 365
           E  A  ++G  Y+K+ +CY+ + E+  AI +F KAL R EDNID R+TL+SL ++  K +
Sbjct: 414 EDVAVHNDGSSYVKVGQCYMVIGEKRKAIPYFQKALQRMEDNIDVRITLSSLFVDVDKSD 473

Query: 366 EAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL 425
           EAI LLSPP +  S    +D+  PWWL+ K+ M L +IY  KGM EDFV  I   + E+L
Sbjct: 474 EAIVLLSPPNNSGSKSA-TDQPKPWWLDGKVKMHLANIYYNKGMFEDFVGTILIPILETL 532

Query: 426 CVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQK 485
            +E   +KV+  ++L   +L +R K+      +S+  G+RP A  +EL  A+RA+K ++K
Sbjct: 533 NIEYANRKVRKAKKLPTNVLYERAKVLAEQRPESVFQGLRPIASPAELQKASRAKKLLEK 592

Query: 486 KEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALAS 545
           + A  E                DT  +  Q + + PP+  LL N EN  L++ LC+ LA 
Sbjct: 593 RAASNE----------------DTIKDDLQRSKQIPPISGLLTNAENHQLVLHLCQTLAL 636

Query: 546 LQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPY 605
           L RY EA ++IN +++L  + L  E KEELRSLGA++AY + DP HGF+  +Y++Q HPY
Sbjct: 637 LHRYWEALQVINRTLKLGNDTLADENKEELRSLGAQIAYRAPDPRHGFNYVRYVVQQHPY 696

Query: 606 SLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAA 665
           SL+AWN YYKV SR   I  + S+H KF+   R +  DCVPPIIISGH+FT  S HQ AA
Sbjct: 697 SLAAWNSYYKVTSR---IEDRFSRHHKFLLRTREEKTDCVPPIIISGHRFTAISQHQSAA 753

Query: 666 RCYLEAYKLLPENPLINL 683
           R YLEAYKL PENP INL
Sbjct: 754 RDYLEAYKLNPENPFINL 771

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476653|ref|XP_004154797.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor 3C polypeptide 3-like [Cucumis sativus]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/511 (55%), Positives = 375/511 (73%), Gaps = 18/511 (3%)

Query: 175 TGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI 234
           TGA+L+ KCG   R+I ILE+Y+K HPS+ADL V+DLL ++ M +  + K L+ IEHA  
Sbjct: 2   TGAKLYQKCGHLERAICILEDYIKGHPSEADLDVVDLLASLYMGSKEFSKALERIEHADR 61

Query: 235 VRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGH 294
           V  +G ELPL L  KAGIC+  LG++EKAE LFA+L+ +   DH++L+ EVAD+LMSL H
Sbjct: 62  VYCAGNELPLNLTTKAGICHAHLGDLEKAECLFANLRRETTYDHSNLMIEVADSLMSLKH 121

Query: 295 SNSALKYYHFLE-TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT 353
            + ALKYY   E  NAG + G LYLK+AECYLS  ER  A  FFYK L   EDNI+ARLT
Sbjct: 122 YSWALKYYLMSEEVNAGENMGILYLKIAECYLSTNEREQAXCFFYKVLQHVEDNINARLT 181

Query: 354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDF 413
           LASLLLEEA+++EAI+LLSPPKD +    +S K  PWWLNEK+ +KLCHIYR +G+ E+F
Sbjct: 182 LASLLLEEARDKEAISLLSPPKDSNPTSSSSSKLKPWWLNEKVKLKLCHIYRTRGLLENF 241

Query: 414 VDAIFPLVCESLCVEALRQKVKV-KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSE 472
           V+ IFPLV ESL +E L++K+KV K++L + +L +R K+ +   T ++  G +P APKS+
Sbjct: 242 VEVIFPLVRESLYIETLQEKIKVNKKKLPRRVLLERVKVLDGRETGNLFRGFKPVAPKSD 301

Query: 473 LLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEEN 532
           L  A+RA++ +QK+E +KEEKKA A AAG+  H             RE PLPNLLK EE 
Sbjct: 302 LTKASRAKRLLQKRERIKEEKKAKALAAGLRMH-------------RESPLPNLLKEEEY 348

Query: 533 QCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHG 592
             LI+DLCKALASL R  EA EII+L+++LA+N L +E+KEEL+ LGA++A+ ST   HG
Sbjct: 349 HILIVDLCKALASLGRCSEALEIISLTLKLAFNSLSMERKEELQLLGAQLAFSSTGTMHG 408

Query: 593 FDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISG 652
           F+ AK++++ +PYS+SAWNCYYKV S +    ++ S+H K +  +++KYKDC PP II+G
Sbjct: 409 FNFAKHVVKQYPYSISAWNCYYKVASCL---TNRDSRHCKLLNSMQSKYKDCAPPYIIAG 465

Query: 653 HQFTMASHHQDAARCYLEAYKLLPENPLINL 683
           HQFT  SHHQDAAR YLEAYK++P++PLINL
Sbjct: 466 HQFTTISHHQDAARKYLEAYKIMPDSPLINL 496

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357115318|ref|XP_003559437.1| PREDICTED: general transcription factor 3C polypeptide 3-like [Brachypodium distachyon]

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 293/680 (43%), Positives = 428/680 (62%), Gaps = 17/680 (2%)

Query: 5   NYGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLS 64
            +G  RK+  K  KKRGR KG +NK SP V K LG+A+L +    F++AI +L E+VR++
Sbjct: 107 GFGLRRKRRSKNGKKRGRTKGRRNKCSPEVIKKLGDATLLFTENRFKEAIPILHEIVRIA 166

Query: 65  PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124
           PN P +YN LG  +   G    A +F ++AA++SPKD +LWK+L+  A++K D A A + 
Sbjct: 167 PNFPNSYNLLGSIYKENGEIDKAINFVMLAAYVSPKDVSLWKKLIDLALKKEDAALARHC 226

Query: 125 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184
             +A+RA+P+D+ L+   A+ Y  + DY+KAAE YEQI +++P N+ A K  AQ++    
Sbjct: 227 ALKAMRADPEDVGLKFDCANIYRALHDYQKAAEIYEQIVRIYPSNIVARKAAAQMYRDSS 286

Query: 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL 244
           Q  ++I +LE+++    +  D +++DLL+++ + NN++ + L+ IE A  V  S  +LP+
Sbjct: 287 QIDKAISLLEDFVDARTTKIDWNLLDLLISLYLRNNSHGEALRQIEKAHQVLGSQHKLPV 346

Query: 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 304
            L+ K  IC   LG+M+ AE+   ++  + + +  DL+ EVA TL ++G    A+K+Y  
Sbjct: 347 NLQAKELICQAYLGDMKHAEMFLQEVCLERSKESTDLVKEVASTLENMGQYEYAIKFYLM 406

Query: 305 LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKE 364
           +E  A  ++G   + LA CY+ + E+  AI +F KAL+R +DN+D R+TL SLL++E K 
Sbjct: 407 IEDVAVQNDGSPDVDLARCYMVIGEKRKAIPYFEKALERMKDNVDVRITLCSLLVDEGKS 466

Query: 365 EEAITLLSPPKDLDSLDMN-SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE 423
            EAI LL PPK+ +SL  N  DK  PWWL+ K+ MKL  +Y   G  EDFV+ IF  V E
Sbjct: 467 TEAIDLLKPPKNSESLSANIPDKQKPWWLDGKVKMKLAKLYYNNGKLEDFVETIFLPVLE 526

Query: 424 SLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKI 483
           +L +E   +KVK  ++L   +L++R K+      DSI+ G RP A  +E+L A RA+K +
Sbjct: 527 TLDIEYANRKVKPTKKLPDDVLRERAKVLGEERPDSIIQGCRPIASPAEVLKANRAKKTL 586

Query: 484 QKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKAL 543
           +K+ A  E                DT  +  + A + PPLP LL + EN  L++DLC+ L
Sbjct: 587 EKRAASNE----------------DTVKDDTRRAKQIPPLPGLLADVENHQLVLDLCRTL 630

Query: 544 ASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLH 603
            SLQRY +A +IIN ++RL  + L  + KEELRSLGA++AY + DP  GFD  +Y++Q H
Sbjct: 631 TSLQRYWDALQIINRTLRLGNDALADDNKEELRSLGAEIAYRAPDPRPGFDYLRYVVQQH 690

Query: 604 PYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQD 663
           P SLSAWN YYKV SR     S+ S+H KF+   +     CVPPIII GH+FT  S HQ 
Sbjct: 691 PDSLSAWNSYYKVTSRTEDKISRISRHLKFLLKTKKDNPKCVPPIIIHGHRFTANSQHQS 750

Query: 664 AARCYLEAYKLLPENPLINL 683
           AA+ YLEAYKL PENPLINL
Sbjct: 751 AAQEYLEAYKLDPENPLINL 770

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	687
TAIR|locus:2007928	896	AT1G17680 [Arabidopsis thalian	0.622	0.477	0.331	1.8e-111
DICTYBASE|DDB_G0278321	997	gtf3C3 "transcription factor I	0.454	0.312	0.254	1.2e-32
UNIPROTKB|I3LAX1	916	GTF3C3 "Uncharacterized protei	0.368	0.276	0.231	1.7e-26
RGD|1309185	883	Gtf3c3 "general transcription	0.414	0.322	0.250	3.6e-25
UNIPROTKB|E1BPR9	886	GTF3C3 "Uncharacterized protei	0.280	0.217	0.257	1.5e-24
UNIPROTKB|E2QYG3	883	GTF3C3 "Uncharacterized protei	0.312	0.243	0.253	9.6e-23
UNIPROTKB|F1NEE6	913	GTF3C3 "Uncharacterized protei	0.307	0.231	0.246	2.5e-22
UNIPROTKB|Q9Y5Q9	886	GTF3C3 "General transcription	0.280	0.217	0.247	2.7e-22
POMBASE|SPCC16C4.14c	1006	sfc4 "transcription factor TFI	0.216	0.148	0.310	8.4e-13
CGD|CAL0004061	1057	TFC4 [Candida albicans (taxid:	0.292	0.190	0.216	2.4e-10

TAIR|locus:2007928 AT1G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.8e-111, Sum P(2) = 1.8e-111
 Identities = 146/440 (33%), Positives = 229/440 (52%)

Query:    32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDF 90
             P + K   EA   +A+G   +A+ +L EV++ +P     Y  L      LG    S+ + 
Sbjct:   150 PDILKRFREALFLHAHGRDIEALPILVEVIKQAPAFDIAYYYLSRVSEQLGKTESSSTEA 209

Query:    91 YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150
               IAA++    S  WK L     ++ + + A  Y  +AI+A+P DI L+   A   +  G
Sbjct:   210 LKIAANIKGSKSPFWKLLYERFKEQENISVARSYASKAIQADPDDIPLKYEYADICLNTG 269

Query:   151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVID 210
              Y +AAE++EQI +  P+ ++A K G Q FLK G+  R+  ILE+++K H S+    V+D
Sbjct:   270 KYREAAETFEQIFRRCPERIEALKWGVQYFLKSGEGERAASILEDHIKSHSSEVGHDVLD 329

Query:   211 LLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL 270
             LL ++ M+ NA+++ L++I   + +   GKEL   LK++  IC++ L  ME+AE + + L
Sbjct:   330 LLASVFMKINAHDRALKYIHDVRQIYNVGKELSSSLKIRQAICHVHLEEMEQAESVLSIL 389

Query:   271 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER 330
               +   +H +LIT +AD L ++G+ +SALKYY  +E  +   NG L++K+A CY+SL+ER
Sbjct:   390 PQEAVSEHPELITNLADELTNIGNFHSALKYY--IEAISEPVNGNLFVKIARCYMSLEER 447

Query:   331 AHAIMFFYKALDRFEDNIDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNSDKSNPW 390
               AI+F+YKAL+   D +D                                 ++ K   W
Sbjct:   448 KQAIVFYYKALNELSDTVDVRITLASLLLEDGKRDEAVLVLSPPENPDP---DTAKLKAW 504

Query:   391 WLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTK 450
             W N KI M LC IY ++GM EDF +    LV + +     R+ VK KR+       QR K
Sbjct:   505 WKNRKIRMNLCQIYHSEGMLEDFANTALQLVLKWVW----RRTVKGKRKRLVLSEHQRNK 560

Query:   451 IYNNLPTDSILCGIRPAAPK 470
                  P D+    +R   PK
Sbjct:   561 -KRRRPRDAQASQLR-GGPK 578

GO:0005634 "nucleus" evidence=ISM

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE|DDB_G0278321 gtf3C3 "transcription factor IIIC-gamma subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 250 (93.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 83/326 (25%), Positives = 145/326 (44%)

Query:    34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVI 93
             V K+L   + QY  GNF+ A S   EVVR+ P L   YN LG    + G  ++A  FYV 
Sbjct:   231 VRKLLVGGNEQYTKGNFDLAFSTYAEVVRMLPRLSIPYNILGKIKESQGEMEAALGFYVY 290

Query:    94 AAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153
              A +   +   W  +   A + G    A+Y   +A R +  D+      +   ++ G Y+
Sbjct:   291 GAQMQGSNGD-WSSIGVRAKEAGQMETALYCFSRACRNDETDLDSFWEKSLILIQKGFYK 349

Query:   154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ----TARSIGILEEYLKVHPS--DADLS 207
             +A +   ++ K    +    +  A+++    Q    +A    +++E L  + S  D  L 
Sbjct:   350 RALKILTKLSKYTNGSPQVLQELARVYSHLSQYHDASAMISEVVDEQLLSNKSLDDVSLD 409

Query:   208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG----NMEKA 263
              ++L++ +  +   Y+ T+           +  E+P  L   A   Y  LG    N   +
Sbjct:   410 SVNLMMELKNKTRNYQDTITIFNKITAKYGNDSEVPFDLVFNACQAYYSLGTDFGNERGS 469

Query:   264 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAE 322
             ++L   L   +  ++ DL T +AD L +LG    AL  Y H  +T+    + ++  K+A+
Sbjct:   470 KLLHLRLLPLDPSEYGDLFTSLADELFALGKYQDALVVYLHLKDTDFDIPSNWV--KIAD 527

Query:   323 CYLSLKERAHAIMFFYKALDRFEDNI 348
              + S K    AI +F KA +R   N+
Sbjct:   528 IHRSTKNYEVAIEYFSKANERVPGNV 553

GO:0000127 "transcription factor TFIIIC complex" evidence=ISS

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|I3LAX1 GTF3C3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 265 (98.3 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 60/259 (23%), Positives = 129/259 (49%)

Query:    37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
             ++GEA++++A G  E+AI +  E++R +P   E ++TL + +   G+ + +  F +IAAH
Sbjct:   148 LMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAH 207

Query:    97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
             L+P D+  W +L   ++++ +  QA++   +A++ EP ++      +S Y ++GD++ A 
Sbjct:   208 LNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAM 267

Query:   157 ESYEQIQKLF-PDNVDA----TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211
             + Y +I  L  P + D      +  A+ + +      +I ++EE    HP    +  +++
Sbjct:   268 DGYRRILNLLAPSDGDRFMQLARDMAKSYYEASDVISAINVIEEAFSKHPGLVSMEDVNI 327

Query:   212 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME-KAEILFADL 270
                + + N  Y+K L+ I     +    +      +   G  +LR+G  E K  I+    
Sbjct:   328 AGELYISNKQYDKALEVIADFSGIVLEKRSTEEGTEENTGCSFLRIGIWERKGRIIATRG 387

Query:   271 QWKNAIDHADLITEVADTL 289
             +W    + +  + +  D +
Sbjct:   388 RWNEVHEPSTRVGQTDDNV 406

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

RGD|1309185 Gtf3c3 "general transcription factor IIIC, polypeptide 3" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
 Identities = 76/303 (25%), Positives = 145/303 (47%)

Query:    37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
             ++GEA++++A G  E+AI +  E++R +P   E ++TL + +   G+ + +  F +IAAH
Sbjct:   149 LMGEANIRFARGEHEEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAH 208

Query:    97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
             L+P D+  W +L   ++++ +  QA++   +A++ EP ++      +S Y ++GD++ A 
Sbjct:   209 LNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAM 268

Query:   157 ESYEQIQKLF-PDN----VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211
             + Y +I  L  P +    +   +  A+ + +   +  +I I+EE    H     +  +++
Sbjct:   269 DGYRRILNLLSPSDGERFMQLARDMAKSYYEANDSTSAINIIEEAFSKHQGLVSMEDVNI 328

Query:   212 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271
                + + N  Y+K L+      I  FSG  L  K  ++ G         + AE +   + 
Sbjct:   329 AAELYISNKQYDKALE-----VITDFSGIILE-KETLEEGTSE----ENKAAETVTCSIP 378

Query:   272 WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERA 331
                 ID    +      L  L   N  L     +E N   D G LYL +AE +L + E  
Sbjct:   379 DSVPIDITVKLMVCLVHLNILEPLNPLLTT--LVEQNP-EDMGDLYLDVAEAFLDVGEYN 435

Query:   332 HAI 334
              A+
Sbjct:   436 SAL 438

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA;ISO

UNIPROTKB|E1BPR9 GTF3C3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 51/198 (25%), Positives = 109/198 (55%)

Query:    37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
             ++GEA++++A G  E+AI +  E++R +P   E ++TL + +   G+ + +  F +IAAH
Sbjct:   151 LMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAH 210

Query:    97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
             L+P D+  W +L   ++++ +  QA++   +A++ EP ++      +S Y ++GD++ A 
Sbjct:   211 LNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAM 270

Query:   157 ESYEQIQKLF-PDN----VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211
             + Y +I  L  P +    +  T+  A+ + +      +I I+EE L  H     +  +++
Sbjct:   271 DGYRRILNLLSPSDGERFMQLTRDMAKSYYEANDVTSAISIIEEALSKHQGLVSMEDVNI 330

Query:   212 LVAILMENNAYEKTLQHI 229
                + + N  Y++ L+ I
Sbjct:   331 AAELYISNKQYDRALEVI 348

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

UNIPROTKB|E2QYG3 GTF3C3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 244 (91.0 bits), Expect = 9.6e-23, Sum P(2) = 9.6e-23
 Identities = 56/221 (25%), Positives = 116/221 (52%)

Query:    37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
             ++GEA++++A G  E+AI +  E++R +P   E ++TL + +   G+ + +  F +IAAH
Sbjct:   150 LMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAH 209

Query:    97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
             L+P D+  W +L   ++++ +  QA++   +A++ EP ++      +S Y ++GD++ A 
Sbjct:   210 LNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAM 269

Query:   157 ESYEQIQKLF-PDN----VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211
             + Y +I  L  P +    +   +  A+ + +      +I I+EE    H     +  +++
Sbjct:   270 DGYRRILNLLSPSDGERFMQLARDMAKSYYEANDVTSAINIIEEAFSKHQGLVSMEDVNI 329

Query:   212 LVAILMENNAYEKTLQHI-EHAQIVRFSGKELPLKLKVKAG 251
                + + N  Y+K L+ I + + IV     E     + KAG
Sbjct:   330 AAELYISNKHYDKALEVITDFSGIVLEKNAEEGTSEENKAG 370

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

UNIPROTKB|F1NEE6 GTF3C3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 235 (87.8 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
 Identities = 54/219 (24%), Positives = 120/219 (54%)

Query:    37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
             ++GEA++++A G  E+AI +  E++R +P   E ++TL + +   G+ + +  F +IAAH
Sbjct:   146 LMGEANIRFARGEREEAILMCMEIIRQAPLAHEPFSTLAMIYEDQGDMEKSLQFELIAAH 205

Query:    97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
             L+P ++  W +L   ++++ +  QA++   +A++ +P ++      +S Y ++G+++ A 
Sbjct:   206 LNPSNTEEWVRLAEMSLEQDNIKQAIFCYAKALKYDPTNVRYLWERSSLYEQLGEHKLAM 265

Query:   157 ESYEQIQKLF-PDN----VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211
             + Y +I  L  P +    +   +  A+ + +    A +I I+EE    H S   +  +++
Sbjct:   266 DGYRRILNLLSPSDGERFMQLARDMAKSYYEANDAASAIEIIEEAFTKHQSLVSMEDVNI 325

Query:   212 LVAILMENNAYEKTLQHI-EHAQIV--RFSGKELPLKLK 247
                + + +  Y+K L  I ++A IV  R + ++ P + K
Sbjct:   326 AAELYISSKQYDKALAVITDYAGIVLERKASEKSPAEEK 364

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

UNIPROTKB|Q9Y5Q9 GTF3C3 "General transcription factor 3C polypeptide 3" [Homo sapiens (taxid:9606)]

 Score = 240 (89.5 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
 Identities = 49/198 (24%), Positives = 107/198 (54%)

Query:    37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
             ++GEA++++A G  E+AI +  E++R +P   E ++TL + +   G+ + +  F +IAAH
Sbjct:   152 LMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTLAMIYEDQGDMEKSLQFELIAAH 211

Query:    97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
             L+P D+  W +L   ++++ +  QA++   +A++ EP ++      +S Y ++GD++ A 
Sbjct:   212 LNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPTNVRYLWERSSLYEQMGDHKMAM 271

Query:   157 ESYEQIQKLF-PDN----VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211
             + Y +I  L  P +    +   +  A+ + +      +I I++E    H     +  +++
Sbjct:   272 DGYRRILNLLSPSDGERFMQLARDMAKSYYEANDVTSAINIIDEAFSKHQGLVSMEDVNI 331

Query:   212 LVAILMENNAYEKTLQHI 229
                + + N  Y+K L+ I
Sbjct:   332 AAELYISNKQYDKALEII 349

GO:0006351 "transcription, DNA-dependent" evidence=IC

GO:0000127 "transcription factor TFIIIC complex" evidence=IDA

GO:0003677 "DNA binding" evidence=IC

GO:0006383 "transcription from RNA polymerase III promoter" evidence=IC;TAS

GO:0042791 "5S class rRNA transcription from RNA polymerase III type 1 promoter" evidence=IC

GO:0042797 "tRNA transcription from RNA polymerase III promoter" evidence=IC

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

POMBASE|SPCC16C4.14c sfc4 "transcription factor TFIIIC complex subunit Sfc4" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 156 (60.0 bits), Expect = 8.4e-13, Sum P(3) = 8.4e-13
 Identities = 49/158 (31%), Positives = 80/158 (50%)

Query:    34 VTKMLGEASLQYAY-GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYV 92
             V +ML  A+  +A  GNF++A  L +E+VR+  N+   +  LG  H   GN +   +  +
Sbjct:   132 VQQMLSLANHLFAQEGNFDEAQKLAEEIVRIDNNVIAAWKMLGECHRQRGNGRVNIEKCL 191

Query:    93 IA----AHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS-LRIHLASFYV 147
             IA    AHL PKD  LW      +       QA Y   +A+ A+P + S L+ ++ +  V
Sbjct:   192 IAWMAAAHLKPKDHELWFTCAKLSESLEFWDQADYCYNRAVSAKPPNKSELKKYIWNRSV 251

Query:   148 ---EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182
                E G  +KAAE ++ + +  P N    K  A++++K
Sbjct:   252 LNKEHGSLKKAAEGFKFLLQSSPYNASILKNLAEIYIK 289

GO:0000127 "transcription factor TFIIIC complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006384 "transcription initiation from RNA polymerase III promoter" evidence=IDA

GO:0000995 "core RNA polymerase III binding transcription factor activity" evidence=IDA

GO:0043035 "chromatin insulator sequence binding" evidence=IDA

CGD|CAL0004061 TFC4 [Candida albicans (taxid:5476)]

 Score = 156 (60.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
 Identities = 46/212 (21%), Positives = 99/212 (46%)

Query:    32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY 91
             P V   L +A+  +   + + A  L  EV++  P     Y  LG    A G      +++
Sbjct:   186 PEVRSNLSQANEAFVRKDLQVAQQLYLEVIKKDPKNFSAYKALGEISKAQGQLNECCNYW 245

Query:    92 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-PKDISLRIHLASFYVEIG 150
             ++AA++ P D+  W Q+   + + G   QA+Y   +AI  +  K     +  A  Y E  
Sbjct:   246 LLAANIHPWDTEFWGQVAQLSAELGHIDQAVYCYGRAITPDIAKSCEFILQRAILYQERK 305

Query:   151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL--KVHPSDA---- 204
              Y KA + ++++++L+P + +  K  A ++ +  +   +I +  + L   +HP       
Sbjct:   306 QYGKALDGFQKVRQLYPKDSNIIKYLASVYSEQKRLNDAINLYMKVLDSNIHPERESNEL 365

Query:   205 ----DLSVIDLLVAILMENNAYEKTLQHIEHA 232
                 D + +++L+ + ++N+++   L  ++ A
Sbjct:   366 YPKFDWAELNILLELHLQNHSWRMGLNVLKLA 397

GO:0005829 "cytosol" evidence=IEA

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

GO:0001041 "transcription from a RNA polymerase III hybrid type promoter" evidence=IEA

GO:0042791 "5S class rRNA transcription from RNA polymerase III type 1 promoter" evidence=IEA

GO:0006384 "transcription initiation from RNA polymerase III promoter" evidence=IEA

GO:0001009 "transcription from RNA polymerase III type 2 promoter" evidence=IEA

GO:0001005 "RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity" evidence=IEA

GO:0001002 "RNA polymerase III type 1 promoter sequence-specific DNA binding" evidence=IEA

GO:0043035 "chromatin insulator sequence binding" evidence=IEA

GO:0001008 "RNA polymerase III type 2 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity" evidence=IEA

GO:0001003 "RNA polymerase III type 2 promoter sequence-specific DNA binding" evidence=IEA

GO:0000995 "core RNA polymerase III binding transcription factor activity" evidence=IEA

GO:0008301 "DNA binding, bending" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002119001 SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (902 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	687
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-18
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-12
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	2e-10
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-09
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	3e-09
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	3e-08
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	2e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-07
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	6e-07
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	2e-06
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	3e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-05
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	5e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	1e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	7e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	0.002
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	0.002
PRK09782	987	PRK09782, PRK09782, bacteriophage N4 receptor, out	0.002
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	0.004
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	0.004

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 89.8 bits (223), Expect = 2e-18
 Identities = 83/365 (22%), Positives = 150/365 (41%), Gaps = 42/365 (11%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           AS+Q   G  ++AI+ L   + L P+ P   + LG A+ ALG+ + A ++   A  L P+
Sbjct: 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE 395

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK------ 154
           ++A   QL    + +GD ++A+  +  A + +P+     + L   Y+  G ++K      
Sbjct: 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455

Query: 155 ----------------------------AAESYEQIQKLFPDNVDATKTGAQLFLKCGQT 186
                                       A E++E+   + PD   A    A++ ++ G  
Sbjct: 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515

Query: 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL 246
             +I   E+ L + P   +L  I  L  + +     E+ +  +E A       +  P   
Sbjct: 516 DDAIQRFEKVLTIDPK--NLRAILALAGLYLRTGNEEEAVAWLEKA-AELNPQEIEPALA 572

Query: 247 KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE 306
             +    YL  G ++KA  +  +     A D  +    +    ++ G  N A+  +  L 
Sbjct: 573 LAQY---YLGKGQLKKALAILNEAA-DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628

Query: 307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEE 366
                D+    L LA+ Y  +K  A AI    +AL+   DN +A++ LA LLL   + E 
Sbjct: 629 ALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687

Query: 367 AITLL 371
           A  + 
Sbjct: 688 AKKIA 692

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 72.8 bits (179), Expect = 3e-13
 Identities = 86/372 (23%), Positives = 139/372 (37%), Gaps = 50/372 (13%)

Query: 37  MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
           +L  A L    GN E+A++ L++   L+P   E    L   +   G  K A      AA 
Sbjct: 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595

Query: 97  LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
            +P     W  L    +  GD  +A+   ++ +  +P      + LA  Y  + +Y KA 
Sbjct: 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

Query: 157 ESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 216
            S ++  +L PDN +A    AQL L   +T  +  I +   K HP  A    ++  + + 
Sbjct: 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715

Query: 217 MEN-----NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ 271
            ++      AY K L+    +Q              +K     L  GN  +A        
Sbjct: 716 QKDYPAAIQAYRKALKRAPSSQNA------------IKLHRALLASGNTAEAVKTLEAWL 763

Query: 272 WKNAIDHADLITEVADTLMSLGHSNSALKYYHFL----ETNAGTDN--GYLYLK------ 319
            K   + A L T +A+  ++    + A+K+Y  +      NA   N   +LYL+      
Sbjct: 764 -KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRA 822

Query: 320 --LAECYLSLKERAHAIM------------------FFYKALDRFEDNIDARLTLASLLL 359
              AE  L L     AI+                     KA++   +    R  LA  LL
Sbjct: 823 LEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882

Query: 360 EEAKEEEAITLL 371
              ++ EA   L
Sbjct: 883 ATGRKAEARKEL 894

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 69.7 bits (171), Expect = 3e-12
 Identities = 116/552 (21%), Positives = 190/552 (34%), Gaps = 121/552 (21%)

Query: 37  MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
            LG A L  A   F++A +L+ EV+   P   +     G    +LGN + A   Y  A  
Sbjct: 162 KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA 221

Query: 97  LSPKDSALWKQLLT----------------------------------FAVQKGDTAQAM 122
           L P + A+   L T                                     QK +   A 
Sbjct: 222 LRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281

Query: 123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182
             ++ A+++ P+ +   +   +   ++G+ E+A +   QI K  P++  A +  A + L+
Sbjct: 282 ETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR 341

Query: 183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL 242
            G+   +I  L   L + P D     + LL    +    +EK  +++  A  +       
Sbjct: 342 LGRVDEAIATLSPALGLDPDDPAA--LSLLGEAYLALGDFEKAAEYLAKATELDPENAAA 399

Query: 243 PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID----HADLITEVADTLMSLGHSNSA 298
             +L    GI  L  G+  +A    ADL+    +D     ADL+  +  + +  G  + A
Sbjct: 400 RTQL----GISKLSQGDPSEA---IADLETAAQLDPELGRADLL--LILSYLRSGQFDKA 450

Query: 299 LKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL----------------- 341
           L     LE     DN  L+  L   YL   + A A   F KAL                 
Sbjct: 451 LAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID 509

Query: 342 ----------DRFED-------NIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS 384
                      RFE        N+ A L LA L L    EEEA+  L    +L+  ++  
Sbjct: 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP 569

Query: 385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRR----- 439
             +            L   Y  KG  +               +  L +            
Sbjct: 570 ALA------------LAQYYLGKGQLK-------------KALAILNEAADAAPDSPEAW 604

Query: 440 LTKGILQQRTKIYNN-LPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAK 498
           L  G  Q      N  + +   L  ++P +  + LL+A          +A+   K+AL  
Sbjct: 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL-- 662

Query: 499 AAGVEWHSDDTD 510
               E   D+T+
Sbjct: 663 ----ELKPDNTE 670

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 19/198 (9%)

Query: 43  LQY-AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD 101
           L Y   G+ E A   L + +   P+    Y  L L +  LG  + A D +  A  L+P +
Sbjct: 39  LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98

Query: 102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRA----EPKDISLRIHLASFYVEIGDYEKAAE 157
             +     TF  Q+G   QAM    QAI      +P        L +   + GD++KA +
Sbjct: 99  GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL--KAGDFDKAEK 156

Query: 158 SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 217
              +  ++ P   ++    A+L+   GQ   +   LE Y + +   A+     L + I +
Sbjct: 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE----SLWLGIRI 212

Query: 218 EN--------NAYEKTLQ 227
                       Y   LQ
Sbjct: 213 ARALGDVAAAQRYGAQLQ 230

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 74/347 (21%), Positives = 125/347 (36%), Gaps = 49/347 (14%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHK--SAFDFYVIAA 95
           LG+  L  A G++  A   L++ + L    P+      LA + L   K     D      
Sbjct: 62  LGKIYL--ALGDYAAAEKELRKALSL--GYPKNQVLPLLARAYLLQGKFQQVLDELPGKT 117

Query: 96  HLSPKDSALWKQLLTFA-VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK 154
            L  + +A    L   A +  G    A     QA+  +P+ +  ++ LA   +    +++
Sbjct: 118 LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDE 177

Query: 155 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVA 214
           A    +++    P NVDA      L L  G    ++    + + + P++   +V+  L  
Sbjct: 178 ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNI--AVLLALAT 235

Query: 215 ILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN 274
           IL+E   +E+  +H + A + +      PL   +KA +                D Q KN
Sbjct: 236 ILIEAGEFEEAEKHAD-ALLKKAPNS--PLAHYLKALV----------------DFQKKN 276

Query: 275 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAI 334
              + D    + D L                   AG                L     A 
Sbjct: 277 ---YEDARETLQDAL-KSAPEYLPALLL------AGA-----------SEYQLGNLEQAY 315

Query: 335 MFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD 381
            +  + L    ++  AR  LAS+ L   + +EAI  LSP   LD  D
Sbjct: 316 QYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 26/100 (26%), Positives = 49/100 (49%)

Query: 69  ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 128
           E    LG  +  LG++  A ++Y  A  L P ++  +  L     + G   +A+    +A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168
           +  +P +     +L   Y ++G YE+A E+YE+  +L P+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 23/206 (11%)

Query: 39  GEASLQYAY-----GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVI 93
            +A LQ A      G++ QA   L++ +   P+    +      +  LG +  A + Y  
Sbjct: 35  AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRK 94

Query: 94  AAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA----EPKDISLRIHLASFYVEI 149
           A  L+P +  +      F   +G   +AM    +A+      EP D    + L +   + 
Sbjct: 95  ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL--KA 152

Query: 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209
           G +++A E  ++  +L P    A    A+L  K G  A +   LE Y +   + A+    
Sbjct: 153 GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE---- 208

Query: 210 DLLVAILMEN--------NAYEKTLQ 227
            LL+ I +            Y+  LQ
Sbjct: 209 SLLLGIRIAKRLGDRAAAQRYQAQLQ 234

Length = 250

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 51  EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-- 108
           E  I+ L+  ++ +P   E ++ LG A+ ALG    A   Y  A  L+  +  +   L  
Sbjct: 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAE 198

Query: 109 -LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
            L +   +  TA+A   +RQA+  +P +I     LA    E GDY +AA +++ +  L P
Sbjct: 199 ALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258

Query: 168 DNVD 171
            +  
Sbjct: 259 ADDP 262

Length = 287

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 2/135 (1%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
             +   Q   GNF +A+S+L++  RL+P   E +N LG A   LG    A   Y  A  L
Sbjct: 104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL 163

Query: 98  SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157
           +P + ++   L    + +GD   A   +  A  +   D  +R +LA      GD+ +A +
Sbjct: 164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223

Query: 158 SYEQIQKLFPDNVDA 172
                Q+L  +    
Sbjct: 224 IAV--QELLSEQAAN 236

Length = 257

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 27/99 (27%), Positives = 49/99 (49%)

Query: 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163
               L     + GD  +A+ Y  +A+  +P +     +LA+ Y ++G YE+A E YE+  
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS 202
           +L PDN  A       + K G+   ++   E+ L++ P+
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY--VIAAHLSPKDSALW 105
           G   +AI  L++ VR +P   E    LG A+S  G+   A   +   +A      +   W
Sbjct: 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342

Query: 106 KQLLT-----FAVQKGDTA-------QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE 153
           + LL        +Q+GD A       QA    +QA + +  D    + L    +   DY 
Sbjct: 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA 402

Query: 154 KAAESYEQIQKLFPDNVDA 172
            A   Y+Q  ++ P N +A
Sbjct: 403 AAERYYQQALRMDPGNTNA 421

Length = 1157

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV- 170
           A+ +GD   A   +++A+ A+P+ +   I L    +  GDY  A E+ E++++  P+ + 
Sbjct: 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249

Query: 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN----AYEKTL 226
           +      + +   G  A  +  L   L+ +P      ++  L  +L E      A     
Sbjct: 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPG---ADLLLALAQLLEEQEGPEAAQALLR 306

Query: 227 QHIEH 231
           + +  
Sbjct: 307 EQLRR 311

Length = 389

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 103 ALWKQLLTFAVQKGDTAQAMYY---------IRQAIRAEPKDISLRIHLASFYVEIGDYE 153
           A   +    A Q G   Q             ++  I A+P +           +E    +
Sbjct: 298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAK 357

Query: 154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
           +A E  ++   L P++       AQ  LK G+   +I IL  YL   P D +
Sbjct: 358 EAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409

Length = 484

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 48/240 (20%), Positives = 93/240 (38%), Gaps = 18/240 (7%)

Query: 50  FEQAISLLKEVV---RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106
           +E+A    ++ +   +L        N  G      G H  A      +  L P+ +  + 
Sbjct: 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369

Query: 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
           +  +  ++ GD  +A     +A++   +D  +  H A  +   G++ +A + Y++   L 
Sbjct: 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429

Query: 167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 226
           PD + +         K G  A S+       K  P   D  V +    +L++ N +++ +
Sbjct: 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD--VYNYYGELLLDQNKFDEAI 487

Query: 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVA 286
           +  + A        EL  + K    +    L  + KA  LF   QWK     A+ + E A
Sbjct: 488 EKFDTA-------IELEKETK---PMYMNVLPLINKALALF---QWKQDFIEAENLCEKA 534

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 39/164 (23%), Positives = 71/164 (43%), Gaps = 5/164 (3%)

Query: 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK 198
           R+ LA  Y+E GD E A E+ ++  +  PD+  A    A  + + G+  ++       L 
Sbjct: 34  RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT 93

Query: 199 VHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258
           ++P++ D  V++     L +   YE+ +Q  E A  +       P +    AG+C L+ G
Sbjct: 94  LNPNNGD--VLNNYGTFLCQQGKYEQAMQQFEQA--IEDPLYPQPARSLENAGLCALKAG 149

Query: 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY 302
           + +KAE         +     + + E+A+     G    A  Y 
Sbjct: 150 DFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYL 192

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 49/256 (19%), Positives = 86/256 (33%), Gaps = 45/256 (17%)

Query: 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173
           QK     A+  ++ A++ +P D   R  L   Y+ +GDY  A +   +   L        
Sbjct: 34  QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVL 93

Query: 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ 233
              A+ +L  G+  + +  L           D                            
Sbjct: 94  PLLARAYLLQGKFQQVLDELPGK----TLLDD---------------------------- 121

Query: 234 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLG 293
                  E   +L    G+ YL LG +E A+  +      +          +A   ++  
Sbjct: 122 -------EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAEN 173

Query: 294 HSNSALKYYHFLETNAGTDNGYL--YLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR 351
             + A      ++     D G +   L   +  LSL     A+  + KA+    +NI   
Sbjct: 174 RFDEARA---LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230

Query: 352 LTLASLLLEEAKEEEA 367
           L LA++L+E  + EEA
Sbjct: 231 LALATILIEAGEFEEA 246

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 31/127 (24%), Positives = 49/127 (38%)

Query: 30  LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFD 89
            +P    +   A+  Y  G+ + ++++L++     P   E     G      GN   A  
Sbjct: 62  RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVS 121

Query: 90  FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149
               AA L+P D   W  L     Q G   +A    RQA+   P + S+  +L    +  
Sbjct: 122 VLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181

Query: 150 GDYEKAA 156
           GD E A 
Sbjct: 182 GDLEDAE 188

Length = 257

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 15/65 (23%), Positives = 23/65 (35%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
           L  A      G++++A++ L+  +   P   E    LG A    G    A      A   
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 98  SPKDS 102
            P D 
Sbjct: 61  DPDDP 65

Length = 65

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201
           LA   +  GDY++A  + E     +P   +A     +  L+ G+ A +  +L   L   P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 202 SDA 204
            D 
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLS 98
            +  +  G++++AI   ++ + L P+  E Y  L LA+  LG +++ A +    A  L 
Sbjct: 9  LGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELD 68

Query: 99 P 99
          P
Sbjct: 69 P 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-DYEKAAES 158
            ++   K L     + GD  +A+    +A+  +P +     +LA  Y+++G DYE+A E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 159 YEQIQKLFP 167
            E+  +L P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%)

Query: 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
            L   A++ GD  +A+  +  A+   P      + L    +  G   +AA          
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 167 PDN 169
           PD+
Sbjct: 62  PDD 64

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 284 EVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR 343
            + +    LG  + AL+YY         DN   Y  LA  Y  L +   A+  + KAL+ 
Sbjct: 5   NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 344 FEDNIDARLTLASLLLEEAKEEEAITLL 371
             DN  A   L     +  K EEA+   
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Length = 100

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 35  TKMLGEASLQY----AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDF 90
           T    +A+       A    + A + L   V  +P        L  A    G+  S+   
Sbjct: 30  TGASAKATGAPESSLAMRQTQGAAAALGAAVLRNPEDLSIAK-LATALYLRGDADSSLAV 88

Query: 91  YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150
              +A   PKD  L        ++ G+  +A+  +R+A R  P D      L +   ++G
Sbjct: 89  LQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148

Query: 151 DYEKAAESYEQIQKLFPDN 169
            +++A  +Y Q  +L P+ 
Sbjct: 149 RFDEARRAYRQALELAPNE 167

Length = 257

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 26/156 (16%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW-- 105
           G   QA +L++ + +  PN PE     GL  S     ++A       AHL+    A W  
Sbjct: 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL------AHLNTLPRAQWNS 562

Query: 106 -----------KQLLTFAVQ---KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 151
                       Q+L  A +    G  A+A   +RQ    +P    + + LA +  + GD
Sbjct: 563 NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----QPPSTRIDLTLADWAQQRGD 618

Query: 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187
           Y  A  +Y+++    P N DA     ++ +  G  A
Sbjct: 619 YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654

Length = 1157

>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane subunit; Provisional

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 25/102 (24%), Positives = 38/102 (37%)

Query: 31  SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDF 90
           +P     +  A++     N   A+S L+  + L PN       LG A    G+   + + 
Sbjct: 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665

Query: 91  YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE 132
              A    P D AL +QL     +  D A   +Y R  I   
Sbjct: 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707

Length = 987

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 47/265 (17%), Positives = 84/265 (31%), Gaps = 23/265 (8%)

Query: 82  GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY---YIRQAIRAEPKDISL 138
              +   +    AA L  +      +         D A A       +   +A P     
Sbjct: 220 PEDQRWLEHDQ-AAELV-RLGENPSRSEKERFAIADRALADLQALLDKWGPQANPLYRRA 277

Query: 139 RIHLASFYVEIGDYEKAAESYEQIQKL---FPDNVDATKTGAQLFLKCGQTARSIGILEE 195
           RI      +    Y +    YE ++      P         A  +L   Q  +++ I  E
Sbjct: 278 RIDRLGALLVRKRYAEVIREYESLEAEGQPLPPYAQEAV--ADAYLALRQPEKALPIYRE 335

Query: 196 YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA------QIVRFSGKE-LP----L 244
                P+D +L +   L    +E   Y++    ++        Q   F+     P    L
Sbjct: 336 LAAAEPADNNLELTIKLFYAYLEAEQYDEAQALLDGLKESTPPQRWDFTRSTKAPNDDYL 395

Query: 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 304
           + +    +     G++ +AE    +L    A  +  L   +AD   + G    A + Y  
Sbjct: 396 EAQQLLVLSLAWRGDLPEAEARLDELL-ATAPGNPWLRLALADVYRARGWPRRAEQEYKQ 454

Query: 305 LETNAGTDNGYLYLKLAECYLSLKE 329
            E+    D+       AE  L L+E
Sbjct: 455 AES-LDPDSLSAERGQAETALDLQE 478

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 2/129 (1%)

Query: 30  LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFD 89
           L     + L EA       +F +A  LLK+ ++ +P   E    L     A G+ ++A  
Sbjct: 130 LPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQA 189

Query: 90  FY-VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148
               +      K +   +  +    Q   T +     R+   A+P D+   + LA     
Sbjct: 190 ILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRL-AADPDDVEAALALADQLHL 248

Query: 149 IGDYEKAAE 157
           +G  E A E
Sbjct: 249 VGRNEAALE 257

Length = 304

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	687
KOG2076	895	consensus RNA polymerase III transcription factor	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.98
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.98
PRK14574	822	hmsH outer membrane protein; Provisional	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.96
PLN03077	857	Protein ECB2; Provisional	99.96
PRK14574	822	hmsH outer membrane protein; Provisional	99.96
KOG1126	638	consensus DNA-binding cell division cycle control	99.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.95
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PLN03077	857	Protein ECB2; Provisional	99.95
PLN03218	1060	maturation of RBCL 1; Provisional	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.94
KOG2076	895	consensus RNA polymerase III transcription factor	99.94
KOG1126	638	consensus DNA-binding cell division cycle control	99.94
KOG2003	840	consensus TPR repeat-containing protein [General f	99.94
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.94
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.94
PLN03218	1060	maturation of RBCL 1; Provisional	99.93
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.93
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.93
KOG2003	840	consensus TPR repeat-containing protein [General f	99.93
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.93
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.92
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.91
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.9
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.9
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.89
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.89
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.89
PRK12370	553	invasion protein regulator; Provisional	99.88
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.88
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.88
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.88
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.88
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.87
PRK12370	553	invasion protein regulator; Provisional	99.87
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.87
KOG1129	478	consensus TPR repeat-containing protein [General f	99.86
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.86
KOG1129	478	consensus TPR repeat-containing protein [General f	99.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.86
PRK11189	296	lipoprotein NlpI; Provisional	99.85
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.84
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.83
KOG1125	579	consensus TPR repeat-containing protein [General f	99.83
PRK11189	296	lipoprotein NlpI; Provisional	99.82
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.82
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.8
KOG1125	579	consensus TPR repeat-containing protein [General f	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.8
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.8
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.79
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.79
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.77
PLN02789	320	farnesyltranstransferase	99.77
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.76
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.75
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.75
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.74
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.74
PLN02789	320	farnesyltranstransferase	99.73
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.71
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.69
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.65
PRK15359	144	type III secretion system chaperone protein SscB;	99.64
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.64
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.63
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.63
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.63
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.61
PRK15359	144	type III secretion system chaperone protein SscB;	99.6
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.57
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.56
PRK04841	903	transcriptional regulator MalT; Provisional	99.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.55
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.55
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.53
PRK04841	903	transcriptional regulator MalT; Provisional	99.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.5
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.5
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.46
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.46
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.46
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.45
KOG0553	304	consensus TPR repeat-containing protein [General f	99.43
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.42
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.39
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.38
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.38
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.37
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.37
KOG0553	304	consensus TPR repeat-containing protein [General f	99.34
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.33
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.3
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.25
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.25
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.24
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.23
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.21
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.18
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.17
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.14
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.14
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.11
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.1
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.08
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.08
PRK11906	458	transcriptional regulator; Provisional	99.07
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.07
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	99.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.06
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.05
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.04
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.03
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.03
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.02
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.02
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.01
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.0
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.0
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.99
PRK15331	165	chaperone protein SicA; Provisional	98.99
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.98
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.98
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.98
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.98
PRK10803	263	tol-pal system protein YbgF; Provisional	98.98
PRK15331	165	chaperone protein SicA; Provisional	98.98
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.97
PRK11906	458	transcriptional regulator; Provisional	98.95
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.94
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.92
KOG2471	696	consensus TPR repeat-containing protein [General f	98.91
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.91
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.89
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.88
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.87
PRK10803	263	tol-pal system protein YbgF; Provisional	98.87
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.86
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.85
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.85
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.85
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.84
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.83
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.82
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.82
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.79
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.79
PF12688	120	TPR_5: Tetratrico peptide repeat	98.78
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.77
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.77
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.75
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.74
PF13512	142	TPR_18: Tetratricopeptide repeat	98.74
PF12688	120	TPR_5: Tetratrico peptide repeat	98.72
KOG4234	271	consensus TPR repeat-containing protein [General f	98.72
KOG2471	696	consensus TPR repeat-containing protein [General f	98.69
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.68
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.68
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.67
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.66
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.64
PF13371	73	TPR_9: Tetratricopeptide repeat	98.61
PF13371	73	TPR_9: Tetratricopeptide repeat	98.59
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.55
PF13512	142	TPR_18: Tetratricopeptide repeat	98.52
KOG1586	288	consensus Protein required for fusion of vesicles	98.52
KOG4234	271	consensus TPR repeat-containing protein [General f	98.5
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.39
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.37
KOG4555	175	consensus TPR repeat-containing protein [Function	98.35
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.34
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.29
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.28
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.27
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.26
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.24
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.21
KOG4555	175	consensus TPR repeat-containing protein [Function	98.2
KOG1258	577	consensus mRNA processing protein [RNA processing	98.2
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.18
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.17
KOG1586	288	consensus Protein required for fusion of vesicles	98.13
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.13
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.1
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.08
PF13428	44	TPR_14: Tetratricopeptide repeat	98.06
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.06
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.06
KOG1585	308	consensus Protein required for fusion of vesicles	98.06
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.04
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.04
KOG1585	308	consensus Protein required for fusion of vesicles	98.03
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.02
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.01
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.01
PF13428	44	TPR_14: Tetratricopeptide repeat	98.0
KOG1258	577	consensus mRNA processing protein [RNA processing	97.95
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.95
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.92
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.92
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.92
PF13431	34	TPR_17: Tetratricopeptide repeat	97.88
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.88
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.83
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.82
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.78
PF13431	34	TPR_17: Tetratricopeptide repeat	97.78
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.78
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.77
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.76
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.69
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.65
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.64
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.64
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.59
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.59
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.56
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.56
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.55
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.54
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.54
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.53
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.51
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.5
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.49
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.49
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.48
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.4
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.38
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.38
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.36
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.34
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.33
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.27
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.22
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	97.21
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.16
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.15
PRK11619	644	lytic murein transglycosylase; Provisional	97.13
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.07
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.05
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.02
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.99
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.91
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.88
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.85
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.72
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.7
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.67
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.66
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.64
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.58
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.51
PRK11619	644	lytic murein transglycosylase; Provisional	96.49
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.49
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.39
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.36
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.35
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.35
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.34
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.2
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.16
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.16
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.13
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.11
KOG1310	758	consensus WD40 repeat protein [General function pr	96.06
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.03
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.95
PRK10941	269	hypothetical protein; Provisional	95.9
PRK10941	269	hypothetical protein; Provisional	95.81
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.76
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.71
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.6
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.59
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.29
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.28
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.24
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.17
KOG1463	411	consensus 26S proteasome regulatory complex, subun	95.15
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.14
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.14
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.13
KOG3364	149	consensus Membrane protein involved in organellar	95.08
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.04
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	95.02
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.93
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.74
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.59
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.56
KOG3364	149	consensus Membrane protein involved in organellar	94.45
KOG2422	665	consensus Uncharacterized conserved protein [Funct	94.34
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.34
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.32
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.07
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.05
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.03
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	93.89
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.89
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.82
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.76
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.72
KOG1463	411	consensus 26S proteasome regulatory complex, subun	93.69
COG1747	711	Uncharacterized N-terminal domain of the transcrip	93.26
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.15
KOG1310	758	consensus WD40 repeat protein [General function pr	93.15
KOG3783	546	consensus Uncharacterized conserved protein [Funct	93.04
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.97
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.83
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.82
COG5159	421	RPN6 26S proteasome regulatory complex component [	92.78
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.77
PRK12798	421	chemotaxis protein; Reviewed	92.6
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.56
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.54
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.42
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.31
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	92.31
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.87
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.87
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.43
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.31
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.93
COG2912	269	Uncharacterized conserved protein [Function unknow	90.72
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	90.05
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.8
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.41
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	89.33
COG2912	269	Uncharacterized conserved protein [Function unknow	89.23
PF13041	50	PPR_2: PPR repeat family	89.19
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.02
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.91
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.83
KOG4014	248	consensus Uncharacterized conserved protein (conta	88.66
KOG0529	421	consensus Protein geranylgeranyltransferase type I	87.74
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.4
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.39
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	87.06
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	86.35
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	86.25
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	86.23
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.21
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	85.76
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.18
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	84.99
PF12854	34	PPR_1: PPR repeat	84.96
COG4941	415	Predicted RNA polymerase sigma factor containing a	84.65
KOG0529	421	consensus Protein geranylgeranyltransferase type I	84.53
PF13041	50	PPR_2: PPR repeat family	84.53
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	84.19
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.59
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	83.34
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	82.88
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	82.74
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.55
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	82.36
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.22
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.16
COG3947	361	Response regulator containing CheY-like receiver a	81.28
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.66
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.61
COG1747	711	Uncharacterized N-terminal domain of the transcrip	80.54
PF12854	34	PPR_1: PPR repeat	80.13

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=100.00  E-value=1.4e-50  Score=405.15  Aligned_cols=628  Identities=29%  Similarity=0.415  Sum_probs=508.9

Q ss_pred             ccchhhhhhccccCCCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHH
Q 005632           12 KTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY   91 (687)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~   91 (687)
                      +++++.++++++...+..+++++..++.+|+.++..|++++|..++.+++.++|.++.+|+.+|.+|..+|+.+++...+
T Consensus       117 ~~s~~~~k~~~~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~  196 (895)
T KOG2076|consen  117 EKSTGTKKRGRRSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW  196 (895)
T ss_pred             eecccCCccCCCCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH
Confidence            34445566666677778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q 005632           92 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-  170 (687)
Q Consensus        92 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-  170 (687)
                      -.|..++|++.+.|..++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|... 
T Consensus       197 llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~  276 (895)
T KOG2076|consen  197 LLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI  276 (895)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999322 


Q ss_pred             ----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH-----------
Q 005632          171 ----DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV-----------  235 (687)
Q Consensus       171 ----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----------  235 (687)
                          +.....+..+...++-+.|++.++.++....+-.....+..++.++.....++.|..........           
T Consensus       277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~  356 (895)
T KOG2076|consen  277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT  356 (895)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence                23345577788888889999999999985444333335788999999999999999888776651           


Q ss_pred             -----------h--ccCCCchHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHH
Q 005632          236 -----------R--FSGKELPLKL-KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY  301 (687)
Q Consensus       236 -----------~--~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  301 (687)
                                 .  +.+-+....+ ...++.+..+.++..+++..+...-...+.+.++.+..++.++...|++.+|+.+
T Consensus       357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~  436 (895)
T KOG2076|consen  357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL  436 (895)
T ss_pred             hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence                       1  1111222233 5555666666666777766666554444777999999999999999999999999


Q ss_pred             HHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCccc
Q 005632          302 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD  381 (687)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  381 (687)
                      |..+.....-.+..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++..+|+.++|.+.+++....++.+
T Consensus       437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~  516 (895)
T KOG2076|consen  437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN  516 (895)
T ss_pred             HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence            99998764455788999999999999999999999999999999999999999999999999999999999988766554


Q ss_pred             CCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCccc
Q 005632          382 MNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSIL  461 (687)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (687)
                      .   ....||....+.+....++...|+.++.+.....++...+.......+.+.++.         .....   ..+  
T Consensus       517 ~---e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~---------~~~~~---~~~--  579 (895)
T KOG2076|consen  517 A---EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRR---------RAIAG---TTS--  579 (895)
T ss_pred             h---hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHH---------Hhhcc---ccc--
Confidence            4   377899999999999999999999999999999999877655444332221111         00000   000  


Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC-CCCchhhhhhccCCCCCcccCcchhhHHHHHHH
Q 005632          462 CGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSD-DTDDESQQEAFREPPLPNLLKNEENQCLIIDLC  540 (687)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  540 (687)
                         .   ......+..                 ..++..+..+... ....+.  +.+ .......++..+|++++..++
T Consensus       580 ---~---~~~~~~~~~-----------------~~~~~k~~~~~~~~~~l~d~--~~~-~~~e~~~Lsiddwfel~~e~i  633 (895)
T KOG2076|consen  580 ---K---RYSELLKQI-----------------IRAREKATDDNVMEKALSDG--TEF-RAVELRGLSIDDWFELFRELI  633 (895)
T ss_pred             ---c---ccchhHHHH-----------------HHHHhccCchHHhhhcccch--hhh-hhhhhccCcHHHHHHHHHHHH
Confidence               0   001111110                 0011111111000 000000  000 011112367889999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhh-----CCCCchhhHHHHH
Q 005632          541 KALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL-----HPYSLSAWNCYYK  615 (687)
Q Consensus       541 ~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~  615 (687)
                      ..+.+.|++++|+.++..++....+....++...+.++.+.+++..+++..|.+++|.++..     +|.-...|++...
T Consensus       634 ~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s  713 (895)
T KOG2076|consen  634 LSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFS  713 (895)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            99999999999999999999988888778888899999999999999999999999999999     8988999997777


Q ss_pred             HHHHhcCCcccccchHHHHHHHHhhCCCC-CCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhhcc
Q 005632          616 VLSRMGKINSKHSKHSKFIRYLRAKYKDC-VPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL  686 (687)
Q Consensus       616 ~~~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~~~  686 (687)
                      ++...++    -....++++++..++|++ ++..++.||....++++..|+.+|.+++..+|++|+++||||
T Consensus       714 ~~~~~~q----~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg  781 (895)
T KOG2076|consen  714 YFSKYGQ----RVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG  781 (895)
T ss_pred             HHHHHHH----HHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            7777777    467899999999999998 666789999999999999999999999999999999999997

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-45  Score=349.64  Aligned_cols=458  Identities=18%  Similarity=0.131  Sum_probs=430.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      ....+.+|...++.|+|.+|++....+...+|.+.+.+..++.++++..+++.....-..+++..|.-.+++.++|.++.
T Consensus        48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~k  127 (966)
T KOG4626|consen   48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILK  127 (966)
T ss_pred             chhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHH
Confidence            34477889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL  193 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  193 (687)
                      ..|++++|+..|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+...+...+|.++-..|+..+|...|
T Consensus       128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY  207 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY  207 (966)
T ss_pred             HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632          194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK  273 (687)
Q Consensus       194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  273 (687)
                      .++++..|...-  +|.++|.++..+|+...|+..|++++.+    +|....+++++|.+|...+.++.|+..|.+++..
T Consensus       208 lkAi~~qp~fAi--awsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l  281 (966)
T KOG4626|consen  208 LKAIETQPCFAI--AWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL  281 (966)
T ss_pred             HHHHhhCCceee--eehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence            999999998775  7999999999999999999999999999    9999999999999999999999999999999998


Q ss_pred             CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632          274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT  353 (687)
Q Consensus       274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  353 (687)
                      .|. ...++.++|.+|.++|..+-|+..|+++++. .|.-+.++.++|.++...|+..+|+.+|.+++.+.|+++++..+
T Consensus       282 rpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~N  359 (966)
T KOG4626|consen  282 RPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNN  359 (966)
T ss_pred             CCc-chhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHH
Confidence            885 9999999999999999999999999999998 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhh
Q 005632          354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK  433 (687)
Q Consensus       354 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  433 (687)
                      ||.++.++|++++|..+|.++++.+|.-.            .++.+||.+|.++|++++|+..|+..++-.         
T Consensus       360 Lgni~~E~~~~e~A~~ly~~al~v~p~~a------------aa~nNLa~i~kqqgnl~~Ai~~YkealrI~---------  418 (966)
T KOG4626|consen  360 LGNIYREQGKIEEATRLYLKALEVFPEFA------------AAHNNLASIYKQQGNLDDAIMCYKEALRIK---------  418 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhChhhh------------hhhhhHHHHHHhcccHHHHHHHHHHHHhcC---------
Confidence            99999999999999999999999999876            499999999999999999999999988553         


Q ss_pred             hhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchh
Q 005632          434 VKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDES  513 (687)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (687)
                                                                                                      
T Consensus       419 --------------------------------------------------------------------------------  418 (966)
T KOG4626|consen  419 --------------------------------------------------------------------------------  418 (966)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchh
Q 005632          514 QQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGF  593 (687)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  593 (687)
                                      |.-.+++..++.+|-..|+...|+..+.+|+.++|.      -.+...-++.++--.|+..+|+
T Consensus       419 ----------------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt------~AeAhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  419 ----------------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT------FAEAHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             ----------------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH------HHHHHhhHHHHhhccCCcHHHH
Confidence                            223345667888899999999999999999998876      4566667788888899999999


Q ss_pred             HHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 005632          594 DCAKYILQLHPYSLSAWNCYYKVLSRMGK  622 (687)
Q Consensus       594 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  622 (687)
                      .-++..|+..|+.++++..+.+++.---+
T Consensus       477 ~sY~~aLklkPDfpdA~cNllh~lq~vcd  505 (966)
T KOG4626|consen  477 QSYRTALKLKPDFPDAYCNLLHCLQIVCD  505 (966)
T ss_pred             HHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence            99999999999999999888887665555

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.1e-42  Score=398.80  Aligned_cols=582  Identities=16%  Similarity=0.149  Sum_probs=477.8

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      ....++..|.+++..|++++|+..+++++...|.++.++..++.++...|++++|+..+.+++..+|.++..+..+|.++
T Consensus       294 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  373 (899)
T TIGR02917       294 YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY  373 (899)
T ss_pred             chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34456677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      ...|++++|+.+|++++..+|++...+..+|.++...|++++|+..++++++..|+.......++..+...|++++|+..
T Consensus       374 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  453 (899)
T TIGR02917       374 LALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA  453 (899)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888888899999999999999999


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632          193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW  272 (687)
Q Consensus       193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  272 (687)
                      +++.....|.++.  ++..+|.++...|++++|+..|++++..    .|....++..++.++...|++++|...+++++.
T Consensus       454 ~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  527 (899)
T TIGR02917       454 AKKLEKKQPDNAS--LHNLLGAIYLGKGDLAKAREAFEKALSI----EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT  527 (899)
T ss_pred             HHHHHHhCCCCcH--HHHHHHHHHHhCCCHHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999888888765  6888999999999999999999999888    677778888899999999999999999999888


Q ss_pred             hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHH
Q 005632          273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARL  352 (687)
Q Consensus       273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  352 (687)
                      ..|. +...+..++.++...|++++|+..++++... .|.+...+..++.++...|++++|+..++++++..|.++.++.
T Consensus       528 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  605 (899)
T TIGR02917       528 IDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAEL-NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL  605 (899)
T ss_pred             hCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            8775 7888888999999999999999999988876 7888888888999999999999999999999988898889999


Q ss_pred             HHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhh
Q 005632          353 TLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQ  432 (687)
Q Consensus       353 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  432 (687)
                      .++.++...|++++|+..++++++..|.++            .++..++.++...|++++|+..+.++++..+.......
T Consensus       606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  673 (899)
T TIGR02917       606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSA------------LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI  673 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            999999999999999999998888877665            37888899999999999999999888876554322211


Q ss_pred             h---hhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 005632          433 K---VKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDT  509 (687)
Q Consensus       433 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (687)
                      .   .....+....+......+....+......        .......     ...+   +-+....+...+....    
T Consensus       674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------~~~~~~~-----~~~g---~~~~A~~~~~~~~~~~----  733 (899)
T TIGR02917       674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF--------ELEGDLY-----LRQK---DYPAAIQAYRKALKRA----  733 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH--------HHHHHHH-----HHCC---CHHHHHHHHHHHHhhC----
Confidence            1   11112222233333333333332221100        0000000     0000   0001111111222111    


Q ss_pred             CchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCC
Q 005632          510 DDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDP  589 (687)
Q Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  589 (687)
                                          |.. .....++.++...|++++|...+++++...|.      ...+....+.++...|++
T Consensus       734 --------------------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~  786 (899)
T TIGR02917       734 --------------------PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN------DAVLRTALAELYLAQKDY  786 (899)
T ss_pred             --------------------CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCcCH
Confidence                                222 45667899999999999999999999987766      456777888999999999


Q ss_pred             cchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHH
Q 005632          590 NHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYL  669 (687)
Q Consensus       590 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~  669 (687)
                      ++|+.+++++++.+|+++.++..++.++...|+     .+|...+.++....|+++..+..+|.++...|++++|+..|+
T Consensus       787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  861 (899)
T TIGR02917       787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-----PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR  861 (899)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-----HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999998     569999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCChhhhhhcc
Q 005632          670 EAYKLLPENPLINLKRL  686 (687)
Q Consensus       670 ~a~~~~P~~p~~~l~~~  686 (687)
                      ++++.+|++|.+.+.++
T Consensus       862 ~a~~~~~~~~~~~~~l~  878 (899)
T TIGR02917       862 KAVNIAPEAAAIRYHLA  878 (899)
T ss_pred             HHHhhCCCChHHHHHHH
Confidence            99999999999987765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.1e-42  Score=395.20  Aligned_cols=586  Identities=15%  Similarity=0.080  Sum_probs=451.9

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      +.....++..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  201 (899)
T TIGR02917       122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD  201 (899)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            33455667788888889999999999999999899888889999999999999999999999998888888888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  190 (687)
                      ++...|++++|+..|++++..+|.++.++..++.++...|++++|...++++++..|+++..++..|.++...|++++|+
T Consensus       202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  281 (899)
T TIGR02917       202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR  281 (899)
T ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence            99999999999999999999899888888899999999999999999999999888888888888888888899999999


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632          191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL  270 (687)
Q Consensus       191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  270 (687)
                      ..++++++.+|+...  .+..+|.++...|++++|...+.+++..    .|........++.++...|++++|+..++++
T Consensus       282 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  355 (899)
T TIGR02917       282 ETLQDALKSAPEYLP--ALLLAGASEYQLGNLEQAYQYLNQILKY----APNSHQARRLLASIQLRLGRVDEAIATLSPA  355 (899)
T ss_pred             HHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999888888764  5677888888899999999999988888    6666777788888888999999999999888


Q ss_pred             hhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHH
Q 005632          271 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA  350 (687)
Q Consensus       271 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  350 (687)
                      +...|. ++..+..+|.++...|++++|+.+|+++... .|.++..+..+|.++...|++++|+..++++++..|+...+
T Consensus       356 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  433 (899)
T TIGR02917       356 LGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATEL-DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA  433 (899)
T ss_pred             HhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence            877764 7788888899999999999999999888876 78888888889999999999999999999999888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHH
Q 005632          351 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL  430 (687)
Q Consensus       351 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  430 (687)
                      ...++.++...|++++|+..+++.....|.++            .++..+|.++...|++++|++.|.++++..+.....
T Consensus       434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  501 (899)
T TIGR02917       434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNA------------SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA  501 (899)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH
Confidence            88888888888999999988888887777655            378889999999999999999998888655433221


Q ss_pred             hhh-hh--hhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 005632          431 RQK-VK--VKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSD  507 (687)
Q Consensus       431 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (687)
                      ... +.  ...+....+.....+++...+...            .....   ..             ..+...+      
T Consensus       502 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~---l~-------------~~~~~~~------  547 (899)
T TIGR02917       502 AANLARIDIQEGNPDDAIQRFEKVLTIDPKNL------------RAILA---LA-------------GLYLRTG------  547 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH------------HHHHH---HH-------------HHHHHcC------
Confidence            111 00  111111122222222222221110            00000   00             0000000      


Q ss_pred             CCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccC
Q 005632          508 DTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDST  587 (687)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g  587 (687)
                        ..+.....    ....+..+|........++..+...|++++|+.+++.++...+.      ....+...+.++...|
T Consensus       548 --~~~~A~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~  615 (899)
T TIGR02917       548 --NEEEAVAW----LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD------SPEAWLMLGRAQLAAG  615 (899)
T ss_pred             --CHHHHHHH----HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcC
Confidence              00000000    00001235566677777888888888888888888888765544      3456677778888888


Q ss_pred             CCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHH
Q 005632          588 DPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARC  667 (687)
Q Consensus       588 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~  667 (687)
                      ++++|+.+++.+++.+|+++.++..++.++...|+    +.+|...+.++...+|++..++..++.++...|+++.|+..
T Consensus       616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  691 (899)
T TIGR02917       616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN----YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI  691 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888888888888888888888888888888888    77888888888888888888888888888888888888888


Q ss_pred             HHHHHhhCCCChhhhhhcc
Q 005632          668 YLEAYKLLPENPLINLKRL  686 (687)
Q Consensus       668 ~~~a~~~~P~~p~~~l~~~  686 (687)
                      +.++....|++|.+...+|
T Consensus       692 ~~~~~~~~~~~~~~~~~~~  710 (899)
T TIGR02917       692 AKSLQKQHPKAALGFELEG  710 (899)
T ss_pred             HHHHHhhCcCChHHHHHHH
Confidence            8888888888887766554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=6e-40  Score=374.52  Aligned_cols=589  Identities=15%  Similarity=0.111  Sum_probs=457.5

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHH-----
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW-----  105 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----  105 (687)
                      +.....++.++..+...++.+.|.+.+++++.++|+++.++..++.++...|+.++|...++++++++|+++.++     
T Consensus        25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~  104 (1157)
T PRK11447         25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTT  104 (1157)
T ss_pred             CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            446677999999999999999999999999999999999999999999999999999999999999999998764     


Q ss_pred             -----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632          106 -----------KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL-RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT  173 (687)
Q Consensus       106 -----------~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  173 (687)
                                 ..+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..|+++++.+|+++.++
T Consensus       105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~  184 (1157)
T PRK11447        105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLR  184 (1157)
T ss_pred             HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHH
Confidence                       566788999999999999999999998888643 22233334456999999999999999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCC----------------------------------CCCcHH------------
Q 005632          174 KTGAQLFLKCGQTARSIGILEEYLKVHP----------------------------------SDADLS------------  207 (687)
Q Consensus       174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p----------------------------------~~~~~~------------  207 (687)
                      ..+|.++...|++++|+..+++++...+                                  +.....            
T Consensus       185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~  264 (1157)
T PRK11447        185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ  264 (1157)
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence            9999999999999999999998865432                                  111000            


Q ss_pred             ------HHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH--
Q 005632          208 ------VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA--  279 (687)
Q Consensus       208 ------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--  279 (687)
                            ....+|.++...|++++|+..|++++..    .|.+..++..+|.++...|++++|+..|++++...|....  
T Consensus       265 ~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~----~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~  340 (1157)
T PRK11447        265 LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA----NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD  340 (1157)
T ss_pred             ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence                  0113477888999999999999999999    7888899999999999999999999999999987774211  


Q ss_pred             -----------HHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH
Q 005632          280 -----------DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI  348 (687)
Q Consensus       280 -----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  348 (687)
                                 ......|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus       341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                       12235588899999999999999999988 899999999999999999999999999999999999998


Q ss_pred             HHHHHHHHH------------------------------------------HHHcCCHHHHHHhcCCCCcCCcccCCCCC
Q 005632          349 DARLTLASL------------------------------------------LLEEAKEEEAITLLSPPKDLDSLDMNSDK  386 (687)
Q Consensus       349 ~~~~~la~~------------------------------------------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  386 (687)
                      .++..++.+                                          +...|++++|+..|++++..+|.++    
T Consensus       420 ~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~----  495 (1157)
T PRK11447        420 NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV----  495 (1157)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----
Confidence            776655544                                          4457889999999999998888765    


Q ss_pred             CChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhh-hh--hhhhhhhhhhhhHhhhccCCCCCccccc
Q 005632          387 SNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK-VK--VKRRLTKGILQQRTKIYNNLPTDSILCG  463 (687)
Q Consensus       387 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (687)
                              .+++.+|.+|...|++++|+..++++++..+........ ..  ........+.....++......      
T Consensus       496 --------~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~------  561 (1157)
T PRK11447        496 --------WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN------  561 (1157)
T ss_pred             --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC------
Confidence                    388999999999999999999999988765443221111 00  0000000111111111100000      


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHH
Q 005632          464 IRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKAL  543 (687)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  543 (687)
                             ..+....   ..++..  ...+....+...+.        .+.+...        +...|.+....+.++.++
T Consensus       562 -------~~~~~l~---~~l~~~--~~l~~a~~l~~~G~--------~~eA~~~--------l~~~p~~~~~~~~La~~~  613 (1157)
T PRK11447        562 -------SNIQELA---QRLQSD--QVLETANRLRDSGK--------EAEAEAL--------LRQQPPSTRIDLTLADWA  613 (1157)
T ss_pred             -------hhHHHHH---HHHhhh--HHHHHHHHHHHCCC--------HHHHHHH--------HHhCCCCchHHHHHHHHH
Confidence                   0000000   000000  00000011111110        1111111        124566677888999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCC
Q 005632          544 ASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKI  623 (687)
Q Consensus       544 ~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  623 (687)
                      ...|++++|+..+++++...|.      +...+..++.++...|++++|+..++.+++..|+++.++..++.++...|+ 
T Consensus       614 ~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~-  686 (1157)
T PRK11447        614 QQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD-  686 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC-
Confidence            9999999999999999998877      457777888899999999999999999999999999999999999999999 


Q ss_pred             cccccchHHHHHHHHhhCCCCCC------ccceeccccccccchHHHHHHHHHHHh---hCCCChh
Q 005632          624 NSKHSKHSKFIRYLRAKYKDCVP------PIIISGHQFTMASHHQDAARCYLEAYK---LLPENPL  680 (687)
Q Consensus       624 ~~~~~~a~~~~~~~~~~~p~~~~------~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~P~~p~  680 (687)
                         +.+|...+.+++...|++++      .+...|.++...|+++.|+..|++|+.   +.|..|-
T Consensus       687 ---~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~  749 (1157)
T PRK11447        687 ---TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQ  749 (1157)
T ss_pred             ---HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCC
Confidence               89999999999998887765      334569999999999999999999986   4455554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-43  Score=334.88  Aligned_cols=371  Identities=17%  Similarity=0.166  Sum_probs=341.6

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      +...++-.+..+++..+++.....-..+++.+|...++|.++|.++...|++++|+..|+.++++.|+..++|.++|.++
T Consensus        81 ~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al  160 (966)
T KOG4626|consen   81 NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAAL  160 (966)
T ss_pred             cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHH
Confidence            34445556778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      ...|+.+.|..+|..+++++|+...+...+|.++...|+..+|..+|.++++..|....+|.+||.++..+|+...|+..
T Consensus       161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~  240 (966)
T KOG4626|consen  161 VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQH  240 (966)
T ss_pred             HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632          193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW  272 (687)
Q Consensus       193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  272 (687)
                      |+++++++|...+  +|.++|.+|...+.|+.|+..|.+++..    .|....++-++|.+|..+|..+-|+..|+++++
T Consensus       241 y~eAvkldP~f~d--AYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~  314 (966)
T KOG4626|consen  241 YEEAVKLDPNFLD--AYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE  314 (966)
T ss_pred             HHHhhcCCCcchH--HHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence            9999999999887  7889999999999999999999999998    888899999999999999999999999999999


Q ss_pred             hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHH
Q 005632          273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARL  352 (687)
Q Consensus       273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  352 (687)
                      ..|. .++++.++|.++-..|+..+|..+|.+++.. .|..+++.+++|.++..+|.+++|..+|.++++..|+...++.
T Consensus       315 ~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n  392 (966)
T KOG4626|consen  315 LQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN  392 (966)
T ss_pred             cCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence            8885 8999999999999999999999999999987 8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632          353 TLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       353 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  423 (687)
                      +||.+|.++|++++|+.+|+.++.+.|.-.            +++.++|..|..+|+.+.|+..|.+.+.-
T Consensus       393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fA------------da~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  393 NLASIYKQQGNLDDAIMCYKEALRIKPTFA------------DALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHhcCchHH------------HHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence            999999999999999999999999999765            59999999999999999998888887744

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-36  Score=303.30  Aligned_cols=557  Identities=15%  Similarity=0.106  Sum_probs=425.3

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      ..|+++..++.+|.+.+..|+|..|+.+|++++.++|. -++....+|.|+..+|+.+.|+..|.++++++|.+..++..
T Consensus       159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~  238 (1018)
T KOG2002|consen  159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA  238 (1018)
T ss_pred             hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence            45788999999999999999999999999999999997 46788999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 005632          108 LLTFAVQKGD---TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGAQLFL  181 (687)
Q Consensus       108 la~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~  181 (687)
                      ||.+-....+   +..++..+.++...+|.+|.++..++..++..|+|..+..+...++......   .+.++.+|++|.
T Consensus       239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H  318 (1018)
T KOG2002|consen  239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH  318 (1018)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            9988776654   7789999999999999999999999999999999999999999998875433   456899999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC---
Q 005632          182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG---  258 (687)
Q Consensus       182 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  258 (687)
                      .+|++++|..+|.++++.+|++... .++.+|.+++..|+++.++.+|++++..    .|........+|.+|...+   
T Consensus       319 a~Gd~ekA~~yY~~s~k~~~d~~~l-~~~GlgQm~i~~~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~  393 (1018)
T KOG2002|consen  319 AQGDFEKAFKYYMESLKADNDNFVL-PLVGLGQMYIKRGDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQ  393 (1018)
T ss_pred             hhccHHHHHHHHHHHHccCCCCccc-cccchhHHHHHhchHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhh
Confidence            9999999999999999999988432 5778999999999999999999999998    7888888888888888775   


Q ss_pred             -CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc----cCCCcHHHHHHHHHHHHHhhcHHHH
Q 005632          259 -NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN----AGTDNGYLYLKLAECYLSLKERAHA  333 (687)
Q Consensus       259 -~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A  333 (687)
                       ..+.|..++.+++...|. +.++|..++.++....-+.. +..|..++..    ..+--+..+.++|..++..|++++|
T Consensus       394 ~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A  471 (1018)
T KOG2002|consen  394 EKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA  471 (1018)
T ss_pred             HHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence             567788888888777664 77788888877765554444 7777666532    2345667777888888888888888


Q ss_pred             HHHHHHHHHh-----cCCC-----HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHH
Q 005632          334 IMFFYKALDR-----FEDN-----IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHI  403 (687)
Q Consensus       334 ~~~~~~al~~-----~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~  403 (687)
                      ...|..++..     +++.     ....++++.++...++++.|.+.|...+...|.-.            .++..+|-.
T Consensus       472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YI------------d~ylRl~~m  539 (1018)
T KOG2002|consen  472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYI------------DAYLRLGCM  539 (1018)
T ss_pred             HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhH------------HHHHHhhHH
Confidence            8888877765     1111     23467788888888888888888888877777654            367777766


Q ss_pred             HHHcCCchHHHHHHHHHHHHh---hhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHH
Q 005632          404 YRAKGMPEDFVDAIFPLVCES---LCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARAR  480 (687)
Q Consensus       404 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (687)
                      ....++..+|...+..++.--   ++..+.....-.++.....+......++...                         
T Consensus       540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~-------------------------  594 (1018)
T KOG2002|consen  540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT-------------------------  594 (1018)
T ss_pred             HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh-------------------------
Confidence            667777777877777766332   2211111110000000000000000000000                         


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHH------------HHHhhh
Q 005632          481 KKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKA------------LASLQR  548 (687)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~  548 (687)
                                                                    ...++.+ .++.|+.+            .-..+.
T Consensus       595 ----------------------------------------------~~~~D~Y-sliaLGN~~~~~l~~~~rn~ek~kk~  627 (1018)
T KOG2002|consen  595 ----------------------------------------------STKTDAY-SLIALGNVYIQALHNPSRNPEKEKKH  627 (1018)
T ss_pred             ----------------------------------------------ccCCchh-HHHHhhHHHHHHhcccccChHHHHHH
Confidence                                                          0000000 11111111            335677


Q ss_pred             HHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCccccc
Q 005632          549 YEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHS  628 (687)
Q Consensus       549 ~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  628 (687)
                      ++.|++++.+++..+|.+      --..--.+.|.-..|++..|..+|.++.+...+..++|..+++++...|+    +.
T Consensus       628 ~~KAlq~y~kvL~~dpkN------~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q----y~  697 (1018)
T KOG2002|consen  628 QEKALQLYGKVLRNDPKN------MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ----YR  697 (1018)
T ss_pred             HHHHHHHHHHHHhcCcch------hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH----HH
Confidence            889999999999888772      22222334555567999999999999999888899999999999999999    99


Q ss_pred             chHHHHHHHHhhCC--CCCCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhhcc
Q 005632          629 KHSKFIRYLRAKYK--DCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL  686 (687)
Q Consensus       629 ~a~~~~~~~~~~~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~~~  686 (687)
                      .|...+..++.++-  +++..+..+|.++...|.+.+|.....+|..+.|.||.+-|-+|
T Consensus       698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence            99999999998733  34566778999999999999999999999999999999988765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=3.9e-35  Score=335.07  Aligned_cols=511  Identities=12%  Similarity=0.064  Sum_probs=387.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET-YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      ..+.+|..+...|++++|+..|++++..+|.+... ......+....|++++|+..|++++..+|+++.++..+|.++..
T Consensus       114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~  193 (1157)
T PRK11447        114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS  193 (1157)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence            45788999999999999999999999998877542 22333444456999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCC----------------------------------CCHHH--------------------HH
Q 005632          115 KGDTAQAMYYIRQAIRAEP----------------------------------KDISL--------------------RI  140 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p----------------------------------~~~~~--------------------~~  140 (687)
                      .|++++|+..+++++...+                                  +....                    ..
T Consensus       194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~  273 (1157)
T PRK11447        194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR  273 (1157)
T ss_pred             cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence            9999999999998765322                                  11100                    01


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHH------------H
Q 005632          141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS------------V  208 (687)
Q Consensus       141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------------~  208 (687)
                      .+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++....            .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            3377788899999999999999999999999999999999999999999999999999999875421            1


Q ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHH----
Q 005632          209 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITE----  284 (687)
Q Consensus       209 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----  284 (687)
                      ....+.++...|++++|+..|++++..    .|....++..+|.++...|++++|+..|++++...|. +..++..    
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~----~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l  428 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQV----DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL  428 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            234577888999999999999999999    7777888999999999999999999999999887774 4443333    


Q ss_pred             --------------------------------------HHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Q 005632          285 --------------------------------------VADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS  326 (687)
Q Consensus       285 --------------------------------------la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~  326 (687)
                                                            +|.++...|++++|+..|++++.. .|+++.+++.+|.++..
T Consensus       429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-DPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence                                                  445556778888888888888877 78888888888888888


Q ss_pred             hhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHH
Q 005632          327 LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA  406 (687)
Q Consensus       327 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  406 (687)
                      .|++++|+..++++++..|+++.+++.++..+...|++++|+..++++..............  -........++..+..
T Consensus       508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~--~l~~~~~l~~a~~l~~  585 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ--RLQSDQVLETANRLRD  585 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH--HHhhhHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888887653322110000000  0011234577899999


Q ss_pred             cCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHH
Q 005632          407 KGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKK  486 (687)
Q Consensus       407 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (687)
                      .|++++|++.+..    .+......    ..          ...+...                  ......+..     
T Consensus       586 ~G~~~eA~~~l~~----~p~~~~~~----~~----------La~~~~~------------------~g~~~~A~~-----  624 (1157)
T PRK11447        586 SGKEAEAEALLRQ----QPPSTRID----LT----------LADWAQQ------------------RGDYAAARA-----  624 (1157)
T ss_pred             CCCHHHHHHHHHh----CCCCchHH----HH----------HHHHHHH------------------cCCHHHHHH-----
Confidence            9999999887662    11110000    00          0000000                  000000000     


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc
Q 005632          487 EALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNI  566 (687)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~  566 (687)
                                ....                        .+..+|++.++...++.++...|++++|+..++.++...+. 
T Consensus       625 ----------~y~~------------------------al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-  669 (1157)
T PRK11447        625 ----------AYQR------------------------VLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-  669 (1157)
T ss_pred             ----------HHHH------------------------HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-
Confidence                      0000                        12346778889999999999999999999999999876655 


Q ss_pred             CchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCch------hhHHHHHHHHHhcCCcccccchHHHHHHHHh
Q 005632          567 LPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLS------AWNCYYKVLSRMGKINSKHSKHSKFIRYLRA  639 (687)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  639 (687)
                           ...+....+.++...|++++|...++.++...|+++.      ++..++.++...|+    ..+|...+++++.
T Consensus       670 -----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~----~~~A~~~y~~Al~  739 (1157)
T PRK11447        670 -----SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ----PQQALETYKDAMV  739 (1157)
T ss_pred             -----ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC----HHHHHHHHHHHHh
Confidence                 3345556677888899999999999999998877653      55667889999999    8899999888875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=2.6e-35  Score=320.03  Aligned_cols=540  Identities=11%  Similarity=-0.027  Sum_probs=398.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+ 
T Consensus        43 ~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-  121 (987)
T PRK09782         43 VIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-  121 (987)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence            4566788899999999999999999999999999999999999999999999999999999999999999988888766 


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF--------YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG  184 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  184 (687)
                         +++++|+..|++++..+|++.+++..++..        |.+.++..++++  .+.+...|........++.+|..+|
T Consensus       122 ---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~  196 (987)
T PRK09782        122 ---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLK  196 (987)
T ss_pred             ---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence               999999999999999999999999999998        666655555555  3333333444456666699999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHH
Q 005632          185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILME-NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA  263 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  263 (687)
                      ++++|+..+.++.+..|.+..  ....++.+|.. .++ +++..+++..       ...+..++..++..+...|+.++|
T Consensus       197 dw~~Ai~lL~~L~k~~pl~~~--~~~~L~~ay~q~l~~-~~a~al~~~~-------lk~d~~l~~ala~~yi~~G~~~~A  266 (987)
T PRK09782        197 QWSQADTLYNEARQQNTLSAA--ERRQWFDVLLAGQLD-DRLLALQSQG-------IFTDPQSRITYATALAYRGEKARL  266 (987)
T ss_pred             CHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHhhCH-HHHHHHhchh-------cccCHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999998888765  46677777777 466 6666664431       124555566666666677766666


Q ss_pred             HHHHHHHhhhC---ch----------------------------------------------------------------
Q 005632          264 EILFADLQWKN---AI----------------------------------------------------------------  276 (687)
Q Consensus       264 ~~~~~~~~~~~---~~----------------------------------------------------------------  276 (687)
                      ...+++.....   |.                                                                
T Consensus       267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (987)
T PRK09782        267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLE  346 (987)
T ss_pred             HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHH
Confidence            66665532110   00                                                                


Q ss_pred             ---------------------------hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC---cHHHHHHHHHHHHH
Q 005632          277 ---------------------------DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLS  326 (687)
Q Consensus       277 ---------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~  326 (687)
                                                 .+...+..++......|++++|..+|+.+... .++   ...+...++.+|..
T Consensus       347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~  425 (987)
T PRK09782        347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPF-QGDARLSQTLMARLASLLES  425 (987)
T ss_pred             HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCC-CcccccCHHHHHHHHHHHHh
Confidence                                       13445556666777888888888888887764 221   23344467777766


Q ss_pred             hhc-------------------------H---HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632          327 LKE-------------------------R---AHAIMFFYKALDRFED--NIDARLTLASLLLEEAKEEEAITLLSPPKD  376 (687)
Q Consensus       327 ~g~-------------------------~---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  376 (687)
                      .+.                         .   ..+...+.+++...|.  ++.++..+|.++.. |+.++|+..+.++..
T Consensus       426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~  504 (987)
T PRK09782        426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ  504 (987)
T ss_pred             CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence            543                         2   2233444555556677  89999999999987 899999999999888


Q ss_pred             CCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCC
Q 005632          377 LDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLP  456 (687)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (687)
                      ..|.+.             ....+|.++...|++++|+..+++++...+........+..                    
T Consensus       505 ~~Pd~~-------------~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a--------------------  551 (987)
T PRK09782        505 RQPDAW-------------QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT--------------------  551 (987)
T ss_pred             hCCchH-------------HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH--------------------
Confidence            888541             46667888889999999999999876543221111000000                    


Q ss_pred             CCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHH
Q 005632          457 TDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLI  536 (687)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (687)
                                               .++.+..   +....+..++..                        ..|++....
T Consensus       552 -------------------------ll~~Gd~---~eA~~~l~qAL~------------------------l~P~~~~l~  579 (987)
T PRK09782        552 -------------------------AQAAGNG---AARDRWLQQAEQ------------------------RGLGDNALY  579 (987)
T ss_pred             -------------------------HHHCCCH---HHHHHHHHHHHh------------------------cCCccHHHH
Confidence                                     0000000   000111111111                        123444444


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632          537 IDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV  616 (687)
Q Consensus       537 ~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  616 (687)
                      ..++..+...|++++|+..+++++...|.       ...+...+.++...|++++|+..++.++..+|+++.+++.++.+
T Consensus       580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a  652 (987)
T PRK09782        580 WWLHAQRYIPGQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA  652 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45555556669999999999999887764       24566777888888999999999999999999999999999999


Q ss_pred             HHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhhcc
Q 005632          617 LSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL  686 (687)
Q Consensus       617 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~~~  686 (687)
                      +...|+    ..++...+.+++..+|+++.++..+|+++...|+++.|+..|+++++++|++..|.+-.+
T Consensus       653 L~~~G~----~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g  718 (987)
T PRK09782        653 LWDSGD----IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP  718 (987)
T ss_pred             HHHCCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence            999998    788888999999999999999999999999999999999999999999999888776554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-34  Score=292.10  Aligned_cols=562  Identities=13%  Similarity=0.067  Sum_probs=441.2

Q ss_pred             HHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-HHHHHHHHHHHH
Q 005632           37 MLGEASLQYAYGNF--EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAV  113 (687)
Q Consensus        37 ~~~~a~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~  113 (687)
                      ++.++..++..|+.  +.|...|..++...|++..+++..|.+.+..|+|..|+.+|++++..+|.. ++....+|.|+.
T Consensus       131 l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~  210 (1018)
T KOG2002|consen  131 LLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFW  210 (1018)
T ss_pred             hhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHH
Confidence            44455555556655  999999999999999999999999999999999999999999999999864 566788999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  190 (687)
                      .+|+.+.|+..|+++++++|.+..++..||.+-....+   +..++..+.++...++.+|.++..|+..++..|++..+.
T Consensus       211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~  290 (1018)
T KOG2002|consen  211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW  290 (1018)
T ss_pred             hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence            99999999999999999999999999999988776654   678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC-CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632          191 GILEEYLKVHPSD-ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP-LKLKVKAGICYLRLGNMEKAEILFA  268 (687)
Q Consensus       191 ~~~~~~~~~~p~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~  268 (687)
                      .+...++...... .....++.+|..|..+|+|++|..+|.++++.    ++.. ...++.+|..++..|+++.|..+|+
T Consensus       291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----~~d~~~l~~~GlgQm~i~~~dle~s~~~fE  366 (1018)
T KOG2002|consen  291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA----DNDNFVLPLVGLGQMYIKRGDLEESKFCFE  366 (1018)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----CCCCccccccchhHHHHHhchHHHHHHHHH
Confidence            9999998875332 22346899999999999999999999999988    4444 7778899999999999999999999


Q ss_pred             HHhhhCchhhHHHHHHHHHHHHhcC----ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-
Q 005632          269 DLQWKNAIDHADLITEVADTLMSLG----HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR-  343 (687)
Q Consensus       269 ~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  343 (687)
                      +++...|. ..+....+|.+|...+    ..+.|..++.++... .|.+..+|..++.++....-+.. +..|..++.. 
T Consensus       367 kv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L  443 (1018)
T KOG2002|consen  367 KVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDIL  443 (1018)
T ss_pred             HHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHH
Confidence            99999985 9999999999998886    678899999999877 79999999999999987655544 9999998854 


Q ss_pred             ----cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005632          344 ----FEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP  419 (687)
Q Consensus       344 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  419 (687)
                          .+--++.+.++|..++..|++.+|...|..++.........+..  --......|++|+++...++++.|.+.|..
T Consensus       444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~--~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~  521 (1018)
T KOG2002|consen  444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG--KSTNLTLKYNLARLLEELHDTEVAEEMYKS  521 (1018)
T ss_pred             HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc--ccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence                23347899999999999999999999999888762111110000  001234689999999999999999999999


Q ss_pred             HHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005632          420 LVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKA  499 (687)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (687)
                      +++..|.-....-...              .+....++..                  .+.               ..+.
T Consensus       522 Ilkehp~YId~ylRl~--------------~ma~~k~~~~------------------ea~---------------~~lk  554 (1018)
T KOG2002|consen  522 ILKEHPGYIDAYLRLG--------------CMARDKNNLY------------------EAS---------------LLLK  554 (1018)
T ss_pred             HHHHCchhHHHHHHhh--------------HHHHhccCcH------------------HHH---------------HHHH
Confidence            9999865322211110              0111110000                  000               0000


Q ss_pred             hccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhh
Q 005632          500 AGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLG  579 (687)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~  579 (687)
                      .+                        +..+..+.++.--++..+.....+.-|-.-++..+..... .   ++......+
T Consensus       555 ~~------------------------l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~---~D~YsliaL  606 (1018)
T KOG2002|consen  555 DA------------------------LNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST-K---TDAYSLIAL  606 (1018)
T ss_pred             HH------------------------HhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc-C---CchhHHHHh
Confidence            00                        1123333445555556677777777777766555542211 0   111112222


Q ss_pred             hhhhcc------------cCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCc
Q 005632          580 AKMAYD------------STDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPP  647 (687)
Q Consensus       580 ~~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  647 (687)
                      +.+++.            .+.+++|+.+|.++|..+|.|..+-|-.+.++...|.    +.+|...|..+.+.-.++..+
T Consensus       607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~----~~~A~dIFsqVrEa~~~~~dv  682 (1018)
T KOG2002|consen  607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR----FSEARDIFSQVREATSDFEDV  682 (1018)
T ss_pred             hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC----chHHHHHHHHHHHHHhhCCce
Confidence            333332            2567889999999999999999999999999999999    999999999999988889999


Q ss_pred             cceeccccccccchHHHHHHHHHHHhhC-C-CChhhhhhcc
Q 005632          648 IIISGHQFTMASHHQDAARCYLEAYKLL-P-ENPLINLKRL  686 (687)
Q Consensus       648 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-P-~~p~~~l~~~  686 (687)
                      ++.+||++..+|+|..|+..|+.+++.. | +++-|..+||
T Consensus       683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La  723 (1018)
T KOG2002|consen  683 WLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA  723 (1018)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence            9999999999999999999999998843 3 3466666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.5e-34  Score=310.57  Aligned_cols=449  Identities=13%  Similarity=0.050  Sum_probs=356.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      ..+..+|..++..|+|++|+..|++++...|+ +..+..+|.||..+|++++|+..+.++++++|++..++..+|.++..
T Consensus       128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34567899999999999999999999999995 78899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      +|++++|+..|..+...++.+......+.....    ...+...+...++..|.+...+..++..+. ......+...+.
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  281 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGLE  281 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhhh
Confidence            999999999998887776654433222222111    134566677777888877666666666543 223334444445


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHH---HcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          195 EYLKVHPSDADLSVIDLLVAILM---ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       195 ~~~~~~p~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      .....++....  .+..++..+.   ..++|++|+..|++++.. ....+....++..+|.++...|++++|+..+++++
T Consensus       282 ~~~~~~~~~~~--~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~-~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal  358 (615)
T TIGR00990       282 DSNELDEETGN--GQLQLGLKSPESKADESYEEAARAFEKALDL-GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI  358 (615)
T ss_pred             ccccccccccc--chHHHHHHHHHhhhhhhHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555443  3444554433   347899999999999986 22246677889999999999999999999999999


Q ss_pred             hhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH
Q 005632          272 WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR  351 (687)
Q Consensus       272 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  351 (687)
                      ..+|. ....+..+|.++...|++++|+..|++++.. .|+++.+++.+|.++...|++++|+..|+++++++|++..++
T Consensus       359 ~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~  436 (615)
T TIGR00990       359 ELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSH  436 (615)
T ss_pred             HcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHH
Confidence            98885 8889999999999999999999999999987 899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHh
Q 005632          352 LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALR  431 (687)
Q Consensus       352 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  431 (687)
                      ..+|.++..+|++++|+..+++++..+|.++            .++..+|.++..+|++++|++.|.+.+...++.... 
T Consensus       437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~~~------------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~-  503 (615)
T TIGR00990       437 IQLGVTQYKEGSIASSMATFRRCKKNFPEAP------------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM-  503 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc-
Confidence            9999999999999999999999999999876            489999999999999999999999988654221000 


Q ss_pred             hhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 005632          432 QKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDD  511 (687)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (687)
                                                                                                      
T Consensus       504 --------------------------------------------------------------------------------  503 (615)
T TIGR00990       504 --------------------------------------------------------------------------------  503 (615)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcc
Q 005632          512 ESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNH  591 (687)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  591 (687)
                                       ......++......+...|++++|+.++++++.+++.      .......++.+++..|++++
T Consensus       504 -----------------~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~------~~~a~~~la~~~~~~g~~~e  560 (615)
T TIGR00990       504 -----------------YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE------CDIAVATMAQLLLQQGDVDE  560 (615)
T ss_pred             -----------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHccCHHH
Confidence                             0000001111122233468999999999999887765      33455667888888999999


Q ss_pred             hhHHHHHHHhhCCCCchhh
Q 005632          592 GFDCAKYILQLHPYSLSAW  610 (687)
Q Consensus       592 A~~~~~~~l~~~p~~~~~~  610 (687)
                      |+.+++.+++..+.....+
T Consensus       561 Ai~~~e~A~~l~~~~~e~~  579 (615)
T TIGR00990       561 ALKLFERAAELARTEGELV  579 (615)
T ss_pred             HHHHHHHHHHHhccHHHHH
Confidence            9999999988877655533

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=8.2e-33  Score=297.15  Aligned_cols=467  Identities=15%  Similarity=0.046  Sum_probs=358.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      ...+..+|..++..|++++|+..|++++...|+ +..+.++|.||..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            456788999999999999999999999999996 7789999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHH
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ  227 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~  227 (687)
                      .+|++++|+..|..+...++.+......+......    ..+...+...+...|.+..  .+..++..+. ......+..
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~--~~~~~~~~~~-~~~~~~~~~  278 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLP--SVTFVGNYLQ-SFRPKPRPA  278 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC--CHHHHHHHHH-HccCCcchh
Confidence            99999999999988887766544332222221111    3455666677777777655  3445555432 222222222


Q ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHH---HHcCCHHHHHHHHHHHhhhC--chhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005632          228 HIEHAQIVRFSGKELPLKLKVKAGICY---LRLGNMEKAEILFADLQWKN--AIDHADLITEVADTLMSLGHSNSALKYY  302 (687)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~  302 (687)
                      .+......    .+.....+..++..+   ...+.+++|+..|++++...  .+....++..+|.++...|++++|+..|
T Consensus       279 ~~~~~~~~----~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~  354 (615)
T TIGR00990       279 GLEDSNEL----DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL  354 (615)
T ss_pred             hhhccccc----ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            23333332    233333344444433   23478999999999998753  2347788999999999999999999999


Q ss_pred             HHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632          303 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM  382 (687)
Q Consensus       303 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  382 (687)
                      ++++.. .|..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.+.
T Consensus       355 ~kal~l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       355 SKSIEL-DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHHHHc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            999987 8999999999999999999999999999999999999999999999999999999999999999999999765


Q ss_pred             CCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccc
Q 005632          383 NSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILC  462 (687)
Q Consensus       383 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (687)
                                  .++..+|.++..+|++++|+..+.++++..                                      
T Consensus       434 ------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------------------------------------  463 (615)
T TIGR00990       434 ------------FSHIQLGVTQYKEGSIASSMATFRRCKKNF--------------------------------------  463 (615)
T ss_pred             ------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------------------
Confidence                        488999999999999999999998887543                                      


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHH
Q 005632          463 GIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKA  542 (687)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  542 (687)
                                                                                         |....+...++.+
T Consensus       464 -------------------------------------------------------------------P~~~~~~~~lg~~  476 (615)
T TIGR00990       464 -------------------------------------------------------------------PEAPDVYNYYGEL  476 (615)
T ss_pred             -------------------------------------------------------------------CCChHHHHHHHHH
Confidence                                                                               2233455677889


Q ss_pred             HHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhc-ccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 005632          543 LASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAY-DSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMG  621 (687)
Q Consensus       543 ~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  621 (687)
                      +...|++++|+..+++++.+.+...............+.+++ ..|++++|+.++++++..+|++..++..++.++...|
T Consensus       477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g  556 (615)
T TIGR00990       477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG  556 (615)
T ss_pred             HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence            999999999999999999987652111111111111222223 3589999999999999999999988999999999999


Q ss_pred             CCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCC
Q 005632          622 KINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLP  676 (687)
Q Consensus       622 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P  676 (687)
                      +    +.+|..++.++....+....        ......+..|+....++-+-.|
T Consensus       557 ~----~~eAi~~~e~A~~l~~~~~e--------~~~a~~~~~a~~~~~~~~~~~~  599 (615)
T TIGR00990       557 D----VDEALKLFERAAELARTEGE--------LVQAISYAEATRTQIQVQEDYP  599 (615)
T ss_pred             C----HHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHHHHHHHHHhH
Confidence            8    78888888887776443221        1122345555555555554444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=2e-31  Score=289.87  Aligned_cols=543  Identities=11%  Similarity=0.020  Sum_probs=411.0

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      |.+....+..+..++..|++++|+..++++++.+|++...+..++.+    +++++|+..|++++..+|++.+++..++.
T Consensus        75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~  150 (987)
T PRK09782         75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCR  150 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence            33455668889999999999999999999999999999888888766    99999999999999999999999999988


Q ss_pred             H--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          111 F--------AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       111 ~--------~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      .        |.+.++..+++.  .+.+..+|........++.+|..+|++++|+..+.++++..|.+......++.+|..
T Consensus       151 ~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q  228 (987)
T PRK09782        151 SEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA  228 (987)
T ss_pred             HhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            7        555544444544  333333333445566668999999999999999999999888888888888888777


Q ss_pred             -cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc------------------------
Q 005632          183 -CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF------------------------  237 (687)
Q Consensus       183 -~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------------------  237 (687)
                       +++ +++..+++..++   .++  .++..++..+...|+.++|...+++.-....                        
T Consensus       229 ~l~~-~~a~al~~~~lk---~d~--~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~  302 (987)
T PRK09782        229 GQLD-DRLLALQSQGIF---TDP--QSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA  302 (987)
T ss_pred             hhCH-HHHHHHhchhcc---cCH--HHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence             466 666666554222   222  2566777777777777777766665221100                        


Q ss_pred             -------------------------------------------------------------------cCCCchHHHHHHH
Q 005632          238 -------------------------------------------------------------------SGKELPLKLKVKA  250 (687)
Q Consensus       238 -------------------------------------------------------------------~~~~~~~~~~~~l  250 (687)
                                                                                         ...|.+...+..+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~  382 (987)
T PRK09782        303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQL  382 (987)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHH
Confidence                                                                               0124556667777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhhCchh--hHHHHHHHHHHHHhcCC---hHHH-------------------------HH
Q 005632          251 GICYLRLGNMEKAEILFADLQWKNAID--HADLITEVADTLMSLGH---SNSA-------------------------LK  300 (687)
Q Consensus       251 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~---~~~A-------------------------~~  300 (687)
                      +....+.|++++|...|+.+.......  .......++.++...+.   ...+                         ..
T Consensus       383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  462 (987)
T PRK09782        383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP  462 (987)
T ss_pred             HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence            888889999999999999987742211  22344477777766654   2222                         22


Q ss_pred             HHHHhhhccCCC--cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCC
Q 005632          301 YYHFLETNAGTD--NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLD  378 (687)
Q Consensus       301 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  378 (687)
                      .+..++.. .|.  ++.+++.+|.++.. +++.+|+..+.+++...|++. ....++.++...|++++|+..++++....
T Consensus       463 ~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~  539 (987)
T PRK09782        463 AIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD  539 (987)
T ss_pred             HHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence            33333333 466  89999999999998 899999999999999999865 46677888889999999999999987665


Q ss_pred             cccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCC
Q 005632          379 SLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTD  458 (687)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (687)
                      |.+             ..++.+|.++...|++++|+..+.++++..+.............             ....   
T Consensus       540 p~~-------------~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l-------------~~~G---  590 (987)
T PRK09782        540 MSN-------------EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR-------------YIPG---  590 (987)
T ss_pred             CCc-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-------------HhCC---
Confidence            543             25688999999999999999999999876433211100000000             0000   


Q ss_pred             cccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHH
Q 005632          459 SILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIID  538 (687)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  538 (687)
                                      ....+               .....+++                        ..+|. ......
T Consensus       591 ----------------r~~eA---------------l~~~~~AL------------------------~l~P~-~~a~~~  614 (987)
T PRK09782        591 ----------------QPELA---------------LNDLTRSL------------------------NIAPS-ANAYVA  614 (987)
T ss_pred             ----------------CHHHH---------------HHHHHHHH------------------------HhCCC-HHHHHH
Confidence                            00000               11111111                        22443 567789


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHH
Q 005632          539 LCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLS  618 (687)
Q Consensus       539 l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  618 (687)
                      ++.++.+.|++++|+..+++++...|.      +..+...++.++...|++++|+..++.+++.+|+++.++..++.++.
T Consensus       615 LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~  688 (987)
T PRK09782        615 RATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999888      45777788888889999999999999999999999999999999999


Q ss_pred             HhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhh
Q 005632          619 RMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLK  684 (687)
Q Consensus       619 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~  684 (687)
                      ..|+    +.+|...+.+++...|++.......|.+.....++..|.+.|.+++..+|+-. +...
T Consensus       689 ~lGd----~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~  749 (987)
T PRK09782        689 RLDD----MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLR  749 (987)
T ss_pred             HCCC----HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccc
Confidence            9999    89999999999999999999999999999999999999999999999999876 4433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=3.4e-31  Score=282.87  Aligned_cols=370  Identities=14%  Similarity=0.072  Sum_probs=330.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      .+..-+..+...|++++|+..++.++...|+++++++.+|.+....|++++|+..|++++..+|+++.++..+|.++...
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS  123 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            34555788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632          116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEE  195 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  195 (687)
                      |++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..+++
T Consensus       124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~  202 (656)
T PRK15174        124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARA  202 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887765 48889999999999999


Q ss_pred             HHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHH----HHHHHHHHh
Q 005632          196 YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK----AEILFADLQ  271 (687)
Q Consensus       196 ~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~  271 (687)
                      ++...|..... ....++.++...|++++|+..+++++..    .|....++..+|.++...|++++    |+..|++++
T Consensus       203 ~l~~~~~~~~~-~~~~l~~~l~~~g~~~eA~~~~~~al~~----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        203 LLPFFALERQE-SAGLAVDTLCAVGKYQEAIQTGESALAR----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HHhcCCCcchh-HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            99987644332 4456788999999999999999999998    78888999999999999999986    899999999


Q ss_pred             hhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH
Q 005632          272 WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR  351 (687)
Q Consensus       272 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  351 (687)
                      ...|. +..++..+|.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|+..|++++..+|++...+
T Consensus       278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~  355 (656)
T PRK15174        278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN  355 (656)
T ss_pred             hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence            99885 8999999999999999999999999999987 899999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005632          352 LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL  420 (687)
Q Consensus       352 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  420 (687)
                      ..++.++...|++++|+..|++++...|.+..    ..|   .++...+...+...+.+.+...+...+
T Consensus       356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~~----~~~---~ea~~~~~~~~~~~~~~~~~~~W~~~~  417 (656)
T PRK15174        356 RYAAAALLQAGKTSEAESVFEHYIQARASHLP----QSF---EEGLLALDGQISAVNLPPERLDWAWEV  417 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhChhhch----hhH---HHHHHHHHHHHHhcCCccchhhHHHHH
Confidence            88899999999999999999999999987642    111   145555555555555554443444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=100.00  E-value=2.7e-29  Score=274.47  Aligned_cols=427  Identities=14%  Similarity=0.074  Sum_probs=291.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      ..+....|++++|+..+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.++...|++++
T Consensus        22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e  101 (765)
T PRK10049         22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE  101 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            44556688888888888888777777777888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      |+..++++++..|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...+..++|+..++++.. .
T Consensus       102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~  179 (765)
T PRK10049        102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T  179 (765)
T ss_pred             HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence            88888888888888888 888888888888888888888888888888888888888888888888888887776654 4


Q ss_pred             CCCCcH---HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhh-
Q 005632          201 PSDADL---SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM---EKAEILFADLQWK-  273 (687)
Q Consensus       201 p~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~-  273 (687)
                      |+....   .....+..+....+                                 ....+++   ++|+..++.++.. 
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~---------------------------------~~~~~r~~~ad~Al~~~~~ll~~~  226 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPT---------------------------------RSEKERYAIADRALAQYDALEALW  226 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccc---------------------------------cChhHHHHHHHHHHHHHHHHHhhc
Confidence            431100   00001111111000                                 0111122   4455555555432 


Q ss_pred             --Cchh---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC-
Q 005632          274 --NAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN-  347 (687)
Q Consensus       274 --~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-  347 (687)
                        .|..   ...+......++...|++++|+..|++++....+....+...+|.++...|++++|+..|++++..+|.+ 
T Consensus       227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~  306 (765)
T PRK10049        227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA  306 (765)
T ss_pred             ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence              1111   1111121122334556666777766666654211111223334666777777777777777766666554 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCC-----CCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005632          348 ---IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN-----SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP  419 (687)
Q Consensus       348 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  419 (687)
                         ......++.++...|++++|+..++++....|....     ...++.-  ...++..++.++...|++++|++.+.+
T Consensus       307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~--~~~a~~~~a~~l~~~g~~~eA~~~l~~  384 (765)
T PRK10049        307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD--WLQGQSLLSQVAKYSNDLPQAEMRARE  384 (765)
T ss_pred             CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence               344555666666677777777776666665543210     0001111  125778999999999999999999888


Q ss_pred             HHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005632          420 LVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKA  499 (687)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (687)
                      ++...                                                                           
T Consensus       385 al~~~---------------------------------------------------------------------------  389 (765)
T PRK10049        385 LAYNA---------------------------------------------------------------------------  389 (765)
T ss_pred             HHHhC---------------------------------------------------------------------------
Confidence            77553                                                                           


Q ss_pred             hccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhh
Q 005632          500 AGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLG  579 (687)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~  579 (687)
                                                    |++..+.+.++.++...|++++|+..+++++.+.|.      +..+.+..
T Consensus       390 ------------------------------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd------~~~l~~~~  433 (765)
T PRK10049        390 ------------------------------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR------NINLEVEQ  433 (765)
T ss_pred             ------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------ChHHHHHH
Confidence                                          444567788999999999999999999999998887      45688888


Q ss_pred             hhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHH
Q 005632          580 AKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYK  615 (687)
Q Consensus       580 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  615 (687)
                      +.+++..|++++|...++.+++..|+++.+..+--.
T Consensus       434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        434 AWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            889999999999999999999999999877654433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=7.2e-30  Score=272.77  Aligned_cols=363  Identities=10%  Similarity=0.019  Sum_probs=320.5

Q ss_pred             HhcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHH
Q 005632           45 YAYGNFEQAISLLKEVVRL---SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQA  121 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  121 (687)
                      +++.+++.-.-++...-+.   ..++.......+......|++++|+..++.++...|+++.++..+|.+....|++++|
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence            3455555555555444332   2334556677788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005632          122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP  201 (687)
Q Consensus       122 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  201 (687)
                      +..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|
T Consensus        96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P  175 (656)
T PRK15174         96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP  175 (656)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632          202 SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL  281 (687)
Q Consensus       202 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  281 (687)
                      ++..  ++..++ .+...|++++|+..+++++...+   .........++.++...|++++|+..+++++...|. ++.+
T Consensus       176 ~~~~--a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~---~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~  248 (656)
T PRK15174        176 PRGD--MIATCL-SFLNKSRLPEDHDLARALLPFFA---LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAAL  248 (656)
T ss_pred             CCHH--HHHHHH-HHHHcCCHHHHHHHHHHHHhcCC---CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHH
Confidence            8875  444443 47889999999999999887622   122334456688899999999999999999998875 8999


Q ss_pred             HHHHHHHHHhcCChHH----HHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632          282 ITEVADTLMSLGHSNS----ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL  357 (687)
Q Consensus       282 ~~~la~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  357 (687)
                      +..+|.++...|++++    |+..|++++.. .|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.+
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~  327 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA  327 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999986    89999999987 899999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Q 005632          358 LLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV  427 (687)
Q Consensus       358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  427 (687)
                      +...|++++|+..+++++...|...            ..+..+|.++...|++++|++.|.++++..++.
T Consensus       328 l~~~G~~~eA~~~l~~al~~~P~~~------------~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREKGVTS------------KWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccch------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            9999999999999999999888764            256667999999999999999999999886553

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.7e-29  Score=236.52  Aligned_cols=338  Identities=16%  Similarity=0.160  Sum_probs=298.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..+-.+|+.++++|+|++||++|.++++..|+.+..|.+++-||...|+|++.++...++++++|+...+++..+..+.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            44455689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHH------------------HHHHh--------------CCC---------------------------
Q 005632          114 QKGDTAQAMYYIR------------------QAIRA--------------EPK---------------------------  134 (687)
Q Consensus       114 ~~g~~~~A~~~~~------------------~a~~~--------------~p~---------------------------  134 (687)
                      .+|++++|+.-..                  +.+..              .|.                           
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            9999888865322                  11110              000                           


Q ss_pred             -----------------------------------------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632          135 -----------------------------------------D---------ISLRIHLASFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus       135 -----------------------------------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~  164 (687)
                                                               +         ..++...|..++-.|++-.|.+.|..+++
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                                                     0         11244456666778999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchH
Q 005632          165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL  244 (687)
Q Consensus       165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  244 (687)
                      ++|.++..+..++.+|....+.++-...|..+.+++|.+++  +|+..|.+++-.+++++|+.-|++++.+    +|.+.
T Consensus       355 l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF~Kai~L----~pe~~  428 (606)
T KOG0547|consen  355 LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADFQKAISL----DPENA  428 (606)
T ss_pred             cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHHHHHhhc----Chhhh
Confidence            99999999999999999999999999999999999999998  7999999999999999999999999999    99999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC------cHHHHH
Q 005632          245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD------NGYLYL  318 (687)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~  318 (687)
                      ..+..++.+.+++++++++...|+.+....|. .++++...|.++..+++++.|++.|..++.. .|.      ++..+.
T Consensus       429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-E~~~~~~~v~~~plV  506 (606)
T KOG0547|consen  429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-EPREHLIIVNAAPLV  506 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-ccccccccccchhhh
Confidence            99999999999999999999999999999996 9999999999999999999999999999988 555      455555


Q ss_pred             HHHHH-HHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCc
Q 005632          319 KLAEC-YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS  379 (687)
Q Consensus       319 ~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  379 (687)
                      ..|.+ +...+++..|+.+++++++++|....++..||.+..++|+.++|+++|+++.....
T Consensus       507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  507 HKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             hhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            55443 33468999999999999999999999999999999999999999999998766543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.98  E-value=2.5e-28  Score=266.84  Aligned_cols=383  Identities=13%  Similarity=0.060  Sum_probs=320.7

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      +.....+...|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|+++. +..+|.
T Consensus        46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~  124 (765)
T PRK10049         46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY  124 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence            4455557788999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH----
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFL----  181 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~----  181 (687)
                      ++...|++++|+..++++++..|+++.++..++.++...|..++|+..++++.. .|+..     .....+..+..    
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~  203 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR  203 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc
Confidence            999999999999999999999999999999999999999999999999987775 55421     11222222222    


Q ss_pred             -HcCCh---HHHHHHHHHHHHhCCCCCcHH-----HHHH-HHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHH
Q 005632          182 -KCGQT---ARSIGILEEYLKVHPSDADLS-----VIDL-LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG  251 (687)
Q Consensus       182 -~~g~~---~~A~~~~~~~~~~~p~~~~~~-----~~~~-la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~  251 (687)
                       ..+++   ++|+..++.+++..|.++...     +... ++ .+...|++++|+..|++++.. ++  +.+..+...++
T Consensus       204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-~~--~~P~~a~~~la  279 (765)
T PRK10049        204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-GQ--IIPPWAQRWVA  279 (765)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-CC--CCCHHHHHHHH
Confidence             22345   789999999997755544321     1112 33 346779999999999998876 21  12333444468


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhhCchh---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCC-------------C--c
Q 005632          252 ICYLRLGNMEKAEILFADLQWKNAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGT-------------D--N  313 (687)
Q Consensus       252 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------------~--~  313 (687)
                      .++...|++++|+..|++++...|..   .......++.++...|++++|+..++++... .|             +  .
T Consensus       280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~  358 (765)
T PRK10049        280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDW  358 (765)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchH
Confidence            99999999999999999998766542   2456777888899999999999999998865 33             2  2


Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhh
Q 005632          314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLN  393 (687)
Q Consensus       314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  393 (687)
                      ..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|++.+++++..+|.+.           
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~-----------  427 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI-----------  427 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-----------
Confidence            457788999999999999999999999999999999999999999999999999999999999999877           


Q ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhh
Q 005632          394 EKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQ  432 (687)
Q Consensus       394 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  432 (687)
                       .+++.+|.++...|++++|...+.++++..++......
T Consensus       428 -~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        428 -NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             -HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence             49999999999999999999999999998877654444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.97  E-value=7.5e-27  Score=249.14  Aligned_cols=465  Identities=13%  Similarity=0.060  Sum_probs=371.9

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL  108 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  108 (687)
                      -.|..+...+..+...++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+
T Consensus        29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal  108 (822)
T PRK14574         29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA  108 (822)
T ss_pred             cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence            34557778899999999999999999999999999999865555888999999999999999999994445555666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                      |.++...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.++...++..+
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~  187 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence            8899999999999999999999999999999999999999999999999999999999986555 666777777888878


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC----------
Q 005632          189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG----------  258 (687)
Q Consensus       189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------  258 (687)
                      |+..++++++.+|++.+  ++..+..++...|-...|.+...+--..+.  ......+....+.-..+.+          
T Consensus       188 AL~~~ekll~~~P~n~e--~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r  263 (822)
T PRK14574        188 ALQASSEAVRLAPTSEE--VLKNHLEILQRNRIVEPALRLAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETER  263 (822)
T ss_pred             HHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            99999999999999987  678888999999999999887776443321  1111111111111122111          


Q ss_pred             --CHHHHHHHHHHHhh---hCchh---hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcH
Q 005632          259 --NMEKAEILFADLQW---KNAID---HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER  330 (687)
Q Consensus       259 --~~~~A~~~~~~~~~---~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  330 (687)
                        -.+.|+..++.++.   ..|+.   ...+....-.++...|++.+++..|+.+.....+--+.+....|..|...+++
T Consensus       264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P  343 (822)
T PRK14574        264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP  343 (822)
T ss_pred             HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence              23557777777665   33421   23345566777889999999999999888654444566888899999999999


Q ss_pred             HHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcc-----cCCCCCCChhhhhHHHHHH
Q 005632          331 AHAIMFFYKALDRFE------DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSL-----DMNSDKSNPWWLNEKIIMK  399 (687)
Q Consensus       331 ~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~  399 (687)
                      ++|+.+|+.++...|      ........|...+...+++++|..++++..+..|.     ......+++-|.  +....
T Consensus       344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l  421 (822)
T PRK14574        344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTL  421 (822)
T ss_pred             HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHH
Confidence            999999999988653      23444578899999999999999999988875551     001123444454  68888


Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHH
Q 005632          400 LCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARA  479 (687)
Q Consensus       400 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (687)
                      ++.++...|+..+|.+.++.++...                                                       
T Consensus       422 ~a~~~~~~gdl~~Ae~~le~l~~~a-------------------------------------------------------  446 (822)
T PRK14574        422 LVQSLVALNDLPTAQKKLEDLSSTA-------------------------------------------------------  446 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-------------------------------------------------------
Confidence            9999999999999988888886554                                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005632          480 RKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLS  559 (687)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~a  559 (687)
                                                                        |.+..+.+.+|.++...|++.+|..+++.+
T Consensus       447 --------------------------------------------------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a  476 (822)
T PRK14574        447 --------------------------------------------------PANQNLRIALASIYLARDLPRKAEQELKAV  476 (822)
T ss_pred             --------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                                                              455667788999999999999999999999


Q ss_pred             HHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhH
Q 005632          560 MRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWN  611 (687)
Q Consensus       560 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  611 (687)
                      ..+.|.      ...+.+..+.+++..|++++|....+++++..|++...-.
T Consensus       477 ~~l~P~------~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~  522 (822)
T PRK14574        477 ESLAPR------SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE  522 (822)
T ss_pred             hhhCCc------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence            888776      5677888889999999999999999999999999986654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.7e-27  Score=218.56  Aligned_cols=337  Identities=15%  Similarity=0.131  Sum_probs=287.6

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      +..+-..|.-++..|+|++|+++|.++++++|+.+..|.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            34667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHH------------------HHHHh--------------C---CC------------------------
Q 005632          148 EIGDYEKAAESYE------------------QIQKL--------------F---PD------------------------  168 (687)
Q Consensus       148 ~~g~~~~A~~~~~------------------~~~~~--------------~---p~------------------------  168 (687)
                      .+|++.+|+....                  +.++.              .   |.                        
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            9999988865322                  11110              0   00                        


Q ss_pred             -----------------------------------------C---------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632          169 -----------------------------------------N---------VDATKTGAQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       169 -----------------------------------------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~  198 (687)
                                                               +         ..++...|..++-.|++-.|...++.++.
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                                                     0         13344556667778889999999999999


Q ss_pred             hCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhh
Q 005632          199 VHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH  278 (687)
Q Consensus       199 ~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  278 (687)
                      ++|....  .|..++.+|....+.++....|.++..+    +|.++.+++..|.+++-++++++|+..|++++..+|. +
T Consensus       355 l~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~  427 (606)
T KOG0547|consen  355 LDPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-N  427 (606)
T ss_pred             cCcccch--HHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-h
Confidence            9988876  4778899999999999999999999998    8888899999999999999999999999999988885 8


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC------CHHHHH
Q 005632          279 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED------NIDARL  352 (687)
Q Consensus       279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~  352 (687)
                      .-.+..++.+.+++++++++...|+.+... .|..++.+...|.++..++++++|++.|++++++.|.      ++..+.
T Consensus       428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV  506 (606)
T KOG0547|consen  428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV  506 (606)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence            888999999999999999999999999877 8999999999999999999999999999999999987      554444


Q ss_pred             HHHHHHH-HcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          353 TLASLLL-EEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       353 ~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      ..|.+.. -.+++..|+++++++++.+|...            .++..||.+..++|+.++|++.|++.+...
T Consensus       507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce------------~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  507 HKALLVLQWKEDINQAENLLRKAIELDPKCE------------QAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             hhhHhhhchhhhHHHHHHHHHHHHccCchHH------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4443222 34889999999999999999875            499999999999999999999999987554

>PLN03077 Protein ECB2; Provisional

Probab=99.96  E-value=3.2e-25  Score=248.25  Aligned_cols=571  Identities=14%  Similarity=0.090  Sum_probs=344.1

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC------------
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLS-PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP------------   99 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------------   99 (687)
                      .....-.....+...|++++|...|+.+.... +.+...+..+...+...+....|...+..++...+            
T Consensus        50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~  129 (857)
T PLN03077         50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS  129 (857)
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence            33334444567788888999988888887642 22333444444444444444444444444433322            


Q ss_pred             --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------------
Q 005632          100 --------------------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--EPK-----------------------  134 (687)
Q Consensus       100 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~-----------------------  134 (687)
                                          .+...|..+...|.+.|++++|+..|.++...  .|+                       
T Consensus       130 ~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~  209 (857)
T PLN03077        130 MFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV  209 (857)
T ss_pred             HHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence                                23344555666666666666666666665432  222                       


Q ss_pred             -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CC
Q 005632          135 -----------DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--HP  201 (687)
Q Consensus       135 -----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p  201 (687)
                                 +..++..+...|.+.|++++|...|+++..   .+...|..+...|.+.|++++|+..|.++...  .|
T Consensus       210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P  286 (857)
T PLN03077        210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP  286 (857)
T ss_pred             HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence                       112233444555555666666665555432   23345555566666666666666666665543  23


Q ss_pred             CCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632          202 SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL  281 (687)
Q Consensus       202 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  281 (687)
                      +..   .+..+...+...|+.+.|.+.+..+.+. +  ...+..++..+...|.+.|++++|..+|+++..    .+...
T Consensus       287 d~~---ty~~ll~a~~~~g~~~~a~~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s  356 (857)
T PLN03077        287 DLM---TITSVISACELLGDERLGREMHGYVVKT-G--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVS  356 (857)
T ss_pred             Chh---HHHHHHHHHHhcCChHHHHHHHHHHHHh-C--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeee
Confidence            322   3555555556666666666666555544 1  234556677778888888888888888887642    25567


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 005632          282 ITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDARLTLASLLLE  360 (687)
Q Consensus       282 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~  360 (687)
                      |..+...|.+.|++++|+++|+++.......+...+..+-..+...|++++|.+.+..+.+... .+..++..+...|.+
T Consensus       357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k  436 (857)
T PLN03077        357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK  436 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            8888888888888888888888776554344555666666677888888888888888877643 346677788889999


Q ss_pred             cCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHH--hhhhhhhh
Q 005632          361 EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEAL--RQKVKVKR  438 (687)
Q Consensus       361 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~  438 (687)
                      .|++++|.++|++..+.+.               .+|..+...|...|+.++|++.|.++... ..++..  .......-
T Consensus       437 ~g~~~~A~~vf~~m~~~d~---------------vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~  500 (857)
T PLN03077        437 CKCIDKALEVFHNIPEKDV---------------ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA  500 (857)
T ss_pred             cCCHHHHHHHHHhCCCCCe---------------eeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHh
Confidence            9999999999988765332               25678888888999999999999988753 111110  00000000


Q ss_pred             hh--hhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhh
Q 005632          439 RL--TKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQE  516 (687)
Q Consensus       439 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (687)
                      ..  ......--..++...-..+.+       ....++                    ..|.+.|.        .+.+..
T Consensus       501 ~~g~l~~~~~i~~~~~~~g~~~~~~-------~~naLi--------------------~~y~k~G~--------~~~A~~  545 (857)
T PLN03077        501 RIGALMCGKEIHAHVLRTGIGFDGF-------LPNALL--------------------DLYVRCGR--------MNYAWN  545 (857)
T ss_pred             hhchHHHhHHHHHHHHHhCCCccce-------echHHH--------------------HHHHHcCC--------HHHHHH
Confidence            00  000000000000000000000       000011                    11111110        000001


Q ss_pred             hccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHH-hhhhhhcccCCCcchhHH
Q 005632          517 AFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRS-LGAKMAYDSTDPNHGFDC  595 (687)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~A~~~  595 (687)
                      .+..        .+.+...+..++..|.+.|+.++|+.+++.+......      .+...+ ....++...|.+++|..+
T Consensus       546 ~f~~--------~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~------Pd~~T~~~ll~a~~~~g~v~ea~~~  611 (857)
T PLN03077        546 QFNS--------HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN------PDEVTFISLLCACSRSGMVTQGLEY  611 (857)
T ss_pred             HHHh--------cCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CCcccHHHHHHHHhhcChHHHHHHH
Confidence            1000        0223344556777899999999999999998764322      123333 334667788999999999


Q ss_pred             HHHHHhhCCC--CchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHh
Q 005632          596 AKYILQLHPY--SLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYK  673 (687)
Q Consensus       596 ~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~  673 (687)
                      ++.+.+.++-  +...+.++..++.+.|+    +.+|.+++.++. ..|+....-.+++ .+...|+.+.|....+++++
T Consensus       612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~----~~eA~~~~~~m~-~~pd~~~~~aLl~-ac~~~~~~e~~e~~a~~l~~  685 (857)
T PLN03077        612 FHSMEEKYSITPNLKHYACVVDLLGRAGK----LTEAYNFINKMP-ITPDPAVWGALLN-ACRIHRHVELGELAAQHIFE  685 (857)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHhCCC----HHHHHHHHHHCC-CCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHh
Confidence            9999865543  34689999999999999    899999999874 3355433223333 55678999999999999999


Q ss_pred             hCCCChhhhhhccC
Q 005632          674 LLPENPLINLKRLN  687 (687)
Q Consensus       674 ~~P~~p~~~l~~~~  687 (687)
                      ++|+++-.+..++|
T Consensus       686 l~p~~~~~y~ll~n  699 (857)
T PLN03077        686 LDPNSVGYYILLCN  699 (857)
T ss_pred             hCCCCcchHHHHHH
Confidence            99999877766654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.96  E-value=6.8e-25  Score=234.25  Aligned_cols=478  Identities=11%  Similarity=0.004  Sum_probs=363.4

Q ss_pred             HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           61 VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI  140 (687)
Q Consensus        61 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  140 (687)
                      .-..|..+...+..+.+..+.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|.......
T Consensus        27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence            34578899999999999999999999999999999999999655558888899999999999999999944444555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632          141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN  220 (687)
Q Consensus       141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~  220 (687)
                      .+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|....   +..++.++...+
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~---~l~layL~~~~~  183 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN---YMTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH---HHHHHHHHHhcc
Confidence            66889999999999999999999999999999999999999999999999999999999998543   345566666677


Q ss_pred             hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHH
Q 005632          221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK  300 (687)
Q Consensus       221 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  300 (687)
                      +..+|+..+++++..    .|....++..+..++...|-...|.+...+-.....+ ....+.          +.+.|.+
T Consensus       184 ~~~~AL~~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l----------~~~~~a~  248 (822)
T PRK14574        184 RNYDALQASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQL----------ERDAAAE  248 (822)
T ss_pred             hHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHH----------HHHHHHH
Confidence            787799999999999    8888899999999999999999998877764332221 111111          1222333


Q ss_pred             HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHhcCC
Q 005632          301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI-------DARLTLASLLLEEAKEEEAITLLSP  373 (687)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~  373 (687)
                      ..+-+... ......          .---.+.|+..++..+...|..|       .+..-.-.++...|++.+++..|+.
T Consensus       249 ~vr~a~~~-~~~~~~----------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~  317 (822)
T PRK14574        249 QVRMAVLP-TRSETE----------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA  317 (822)
T ss_pred             HHhhcccc-cccchh----------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            33222211 000111          01124667777777777433322       2334455677788999999999998


Q ss_pred             CCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhcc
Q 005632          374 PKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYN  453 (687)
Q Consensus       374 a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (687)
                      +......-|.           -+....|..|..++++++|+.+|.+++....+.                          
T Consensus       318 l~~~~~~~P~-----------y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--------------------------  360 (822)
T PRK14574        318 MEAEGYKMPD-----------YARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--------------------------  360 (822)
T ss_pred             hhhcCCCCCH-----------HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--------------------------
Confidence            7755432221           378889999999999999999988887554210                          


Q ss_pred             CCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhh
Q 005632          454 NLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQ  533 (687)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (687)
                                                                                               ...|...
T Consensus       361 -------------------------------------------------------------------------~~~~~~~  367 (822)
T PRK14574        361 -------------------------------------------------------------------------FRNSDDL  367 (822)
T ss_pred             -------------------------------------------------------------------------cCCCcch
Confidence                                                                                     0001111


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc---------cCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCC
Q 005632          534 CLIIDLCKALASLQRYEEASEIINLSMRLAYN---------ILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHP  604 (687)
Q Consensus       534 ~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p  604 (687)
                      .....|.-.+...+++++|..++++.....|.         ..+.+.-.+...+.+.++...|+..+|...++.++...|
T Consensus       368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP  447 (822)
T PRK14574        368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP  447 (822)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            11235566788889999999999888875442         123444567777888888888999999999999999999


Q ss_pred             CCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhh
Q 005632          605 YSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLI  681 (687)
Q Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~  681 (687)
                      .+..++..++.++...|.    ..+|...++.+...+|++..+.+..|.+++..+++..|.......+...|+||-+
T Consensus       448 ~n~~l~~~~A~v~~~Rg~----p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        448 ANQNLRIALASIYLARDL----PRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             CCHHHHHHHHHHHHhcCC----HHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            999999999999999998    7888888888888899999999999999999999999999999999999998754

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7.5e-27  Score=228.49  Aligned_cols=309  Identities=17%  Similarity=0.129  Sum_probs=272.4

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      +....+.++......-+..+|+..|.+.-...++...++..+|..|+.+++|++|..+|+.+-...|-.....-.+..++
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L  397 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL  397 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence            34455667777778888899999999977778888888999999999999999999999999999998777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      +.+.+--+--.+.+..+..+|+.|+.|..+|.+|..+++++.|+++|+++++++|....++..+|.-+....++|.|..+
T Consensus       398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~  477 (638)
T KOG1126|consen  398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKS  477 (638)
T ss_pred             HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHH
Confidence            77777655555667788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632          193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW  272 (687)
Q Consensus       193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  272 (687)
                      |+.++..+|.+..  +|+.+|.+|.++++++.|.-.|++|+++    +|.+..+...+|.++.+.|+.++|+.++++++.
T Consensus       478 fr~Al~~~~rhYn--AwYGlG~vy~Kqek~e~Ae~~fqkA~~I----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~  551 (638)
T KOG1126|consen  478 FRKALGVDPRHYN--AWYGLGTVYLKQEKLEFAEFHFQKAVEI----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH  551 (638)
T ss_pred             HHhhhcCCchhhH--HHHhhhhheeccchhhHHHHHHHhhhcC----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence            9999999999876  8999999999999999999999999999    888888899999999999999999999999988


Q ss_pred             hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632          273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID  349 (687)
Q Consensus       273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  349 (687)
                      .+|. ++-..+..|.+++..+++++|+..++++... -|+...+++.+|.+|...|+.+.|+..|.-|..++|.-..
T Consensus       552 ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  552 LDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             cCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            8885 8888888999999999999999999988877 7888889999999999999999999999999998886554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.95  E-value=4.4e-25  Score=197.88  Aligned_cols=322  Identities=17%  Similarity=0.144  Sum_probs=259.1

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      +.++...+..|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+...|+..+.+++++.|+...+....|.
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH---H------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDIS---L------------RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT  175 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~---~------------~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  175 (687)
                      +++.+|.+++|..-|+.++..+|++..   +            +......+...|+...|++....++++.|-+...+..
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~  194 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA  194 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence            999999999999999999998885532   2            2223344556788888888888888888888888888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 005632          176 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL  255 (687)
Q Consensus       176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (687)
                      .+.+|...|++..|+.-++.+-++..++.+  .++.++.+++..|+.+.++...+.++++    +|..-..+        
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe--~~ykis~L~Y~vgd~~~sL~~iRECLKl----dpdHK~Cf--------  260 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTE--GHYKISQLLYTVGDAENSLKEIRECLKL----DPDHKLCF--------  260 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccchH--HHHHHHHHHHhhhhHHHHHHHHHHHHcc----CcchhhHH--------
Confidence            888888888888888888888887777765  6778888888888888888888888887    44332221        


Q ss_pred             HcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcH----HHHHHHHHHHHHhhcHH
Q 005632          256 RLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYLKLAECYLSLKERA  331 (687)
Q Consensus       256 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~  331 (687)
                               ..|+++...      .-...-+......++|.++++..+++++. .|..+    ...-.+..|+..-|++.
T Consensus       261 ---------~~YKklkKv------~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~  324 (504)
T KOG0624|consen  261 ---------PFYKKLKKV------VKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFG  324 (504)
T ss_pred             ---------HHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHH
Confidence                     112221110      00111233445678899999999998877 56533    34455778899999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632          332 HAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM  382 (687)
Q Consensus       332 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  382 (687)
                      +|+..+.+++..+|++..++...+..|+-...|+.|+..|+++.+.++.+.
T Consensus       325 eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  325 EAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            999999999999999999999999999999999999999999999988764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.95  E-value=1.9e-24  Score=236.16  Aligned_cols=464  Identities=13%  Similarity=0.056  Sum_probs=331.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCChHHHHHHHHHHhccC-CCCHHHHHHHHHHHHH
Q 005632           38 LGEASLQYAYGNFEQAISLLKEVVRLSP--NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLTFAVQ  114 (687)
Q Consensus        38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~  114 (687)
                      -.....+...|++++|+..|+.+....|  -+...+..+..++...++++.|...+..+.... ..+...+..+..+|.+
T Consensus        91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k  170 (697)
T PLN03081         91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK  170 (697)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence            3344556677888888888887765432  245667777777777888888877777766542 1246667777788888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NVDATKTGAQLFLKCGQTARSIGIL  193 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~  193 (687)
                      .|++++|...|+++.+   .+...|..+...|.+.|++++|+..|+++.+..+. +...+..+...+...|..+.+..++
T Consensus       171 ~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~  247 (697)
T PLN03081        171 CGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH  247 (697)
T ss_pred             CCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence            8888888888877643   24556777777888888888888888887765432 3455666667777777777777777


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632          194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK  273 (687)
Q Consensus       194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  273 (687)
                      ..+.+..-.. +..++..+...|.+.|++++|...|+...       +.+...|..+...|.+.|++++|+.+|+++...
T Consensus       248 ~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~  319 (697)
T PLN03081        248 CCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS  319 (697)
T ss_pred             HHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            7666553221 11256677788888888888887777652       335566777777788888888888888777655


Q ss_pred             CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632          274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT  353 (687)
Q Consensus       274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  353 (687)
                      ....+...+..+...+...|++++|.+++..+.+...+.+..++..+...|.+.|++++|...|++..+   .+...|..
T Consensus       320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~  396 (697)
T PLN03081        320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNA  396 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHH
Confidence            433366677777777888888888888887777665566777777788888888888888888877643   24567777


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhh
Q 005632          354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQK  433 (687)
Q Consensus       354 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  433 (687)
                      +...|.+.|+.++|+++|+++......           ++..++..+..++...|..++|.+.|..+.+..-        
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~~g~~-----------Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g--------  457 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIAEGVA-----------PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--------  457 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-----------CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC--------
Confidence            778888888888888888776553221           1224677777777788888888777777664320        


Q ss_pred             hhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchh
Q 005632          434 VKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDES  513 (687)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (687)
                                                                                                      
T Consensus       458 --------------------------------------------------------------------------------  457 (697)
T PLN03081        458 --------------------------------------------------------------------------------  457 (697)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchh
Q 005632          514 QQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGF  593 (687)
Q Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  593 (687)
                                  +..+...   +.-++.+|.+.|+.++|.++++++.    .    ......+..++.++...|+.+.|.
T Consensus       458 ------------~~p~~~~---y~~li~~l~r~G~~~eA~~~~~~~~----~----~p~~~~~~~Ll~a~~~~g~~~~a~  514 (697)
T PLN03081        458 ------------IKPRAMH---YACMIELLGREGLLDEAYAMIRRAP----F----KPTVNMWAALLTACRIHKNLELGR  514 (697)
T ss_pred             ------------CCCCccc---hHhHHHHHHhcCCHHHHHHHHHHCC----C----CCCHHHHHHHHHHHHHcCCcHHHH
Confidence                        0011122   2345567999999999999987652    1    113345666677788899999999


Q ss_pred             HHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhC
Q 005632          594 DCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKY  641 (687)
Q Consensus       594 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  641 (687)
                      ..++.++...|++...+.++..++.+.|+    +.+|.+.+..+..+.
T Consensus       515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~----~~~A~~v~~~m~~~g  558 (697)
T PLN03081        515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGR----QAEAAKVVETLKRKG  558 (697)
T ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHhCCC----HHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999    899999999998863

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.95  E-value=8.9e-23  Score=198.15  Aligned_cols=521  Identities=15%  Similarity=0.083  Sum_probs=402.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH---
Q 005632           47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY---  123 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---  123 (687)
                      .++..+|..+++.+.+.+|.+|..|..-+.+-...|++..|.....+..+..|.+.+.|..-.++    ...+.|..   
T Consensus       264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRL----hp~d~aK~vvA  339 (913)
T KOG0495|consen  264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRL----HPPDVAKTVVA  339 (913)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhc----CChHHHHHHHH
Confidence            35678899999999999999999999999999999999999998888888888877777654322    22233333   


Q ss_pred             ----------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632          124 ----------------------------YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT  175 (687)
Q Consensus       124 ----------------------------~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  175 (687)
                                                  .++++++..|++...|-    ......+.+.|...+.++.+..|.+.+.|..
T Consensus       340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlA  415 (913)
T KOG0495|consen  340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLA  415 (913)
T ss_pred             HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHH
Confidence                                        44444554554444332    2234566777888888888888888888876


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc------------------
Q 005632          176 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF------------------  237 (687)
Q Consensus       176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------------  237 (687)
                      ++++    .-|+.|...+.++-+.-|.++.  +|..-+.+-..+|+.+...+.+.+.+....                  
T Consensus       416 larL----etYenAkkvLNkaRe~iptd~~--IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~  489 (913)
T KOG0495|consen  416 LARL----ETYENAKKVLNKAREIIPTDRE--IWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC  489 (913)
T ss_pred             HHHH----HHHHHHHHHHHHHHhhCCCChh--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence            6654    4578888888888888888775  677777777788877777777766654321                  


Q ss_pred             --------------------cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHH
Q 005632          238 --------------------SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNS  297 (687)
Q Consensus       238 --------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  297 (687)
                                          .........|..-+..+.+.+.++-|+.+|..+++.+|. ...+|...+..-...|..++
T Consensus       490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Es  568 (913)
T KOG0495|consen  490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRES  568 (913)
T ss_pred             hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHH
Confidence                                123344456667777888888899999999999999886 88889999988889999999


Q ss_pred             HHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcC
Q 005632          298 ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL  377 (687)
Q Consensus       298 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  377 (687)
                      -..++++++.. .|....+|...+..+...|+...|...+.++++.+|++.++|+.-..+.....+++.|..+|.++...
T Consensus       569 l~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~  647 (913)
T KOG0495|consen  569 LEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI  647 (913)
T ss_pred             HHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence            99999999987 78899999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCC
Q 005632          378 DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPT  457 (687)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (687)
                      .|..             ++++.-+.+...+|+.++|++.++..++..+.-+-..-...                      
T Consensus       648 sgTe-------------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG----------------------  692 (913)
T KOG0495|consen  648 SGTE-------------RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG----------------------  692 (913)
T ss_pred             CCcc-------------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh----------------------
Confidence            7755             58899999999999999999999999988754211111000                      


Q ss_pred             CcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHH
Q 005632          458 DSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLII  537 (687)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (687)
                                       .....+        +..|.....-.+|....                        |....+.+
T Consensus       693 -----------------Qi~e~~--------~~ie~aR~aY~~G~k~c------------------------P~~ipLWl  723 (913)
T KOG0495|consen  693 -----------------QIEEQM--------ENIEMAREAYLQGTKKC------------------------PNSIPLWL  723 (913)
T ss_pred             -----------------HHHHHH--------HHHHHHHHHHHhccccC------------------------CCCchHHH
Confidence                             000001        01111122222343333                        44556888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHH
Q 005632          538 DLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVL  617 (687)
Q Consensus       538 ~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  617 (687)
                      .++++.-..|+...|..+++++...+|.      +..++.-..+.-+..|+.++|...+.++|+.-|++-.+|..-..+.
T Consensus       724 lLakleEk~~~~~rAR~ildrarlkNPk------~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le  797 (913)
T KOG0495|consen  724 LLAKLEEKDGQLVRARSILDRARLKNPK------NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLE  797 (913)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHhcCCC------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhc
Confidence            9999999999999999999999887776      5677777788888999999999999999999999999997665555


Q ss_pred             HHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhh
Q 005632          618 SRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLI  681 (687)
Q Consensus       618 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~  681 (687)
                      -+.+.        ......++.+..+++.+++..|..+....+++.|...|.||++.+|++.-+
T Consensus       798 ~~~~r--------kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~  853 (913)
T KOG0495|consen  798 PRPQR--------KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA  853 (913)
T ss_pred             cCccc--------chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence            44443        223345566678889999999999999999999999999999999998543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=9.8e-25  Score=223.46  Aligned_cols=277  Identities=16%  Similarity=0.088  Sum_probs=194.9

Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHH
Q 005632           30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALW  105 (687)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~  105 (687)
                      ..+.....+..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ...+
T Consensus        31 ~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~  110 (389)
T PRK11788         31 ESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL  110 (389)
T ss_pred             hhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            345566677778888899999999999999999999988899999999999999999999998888754322    2457


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 005632          106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLF  180 (687)
Q Consensus       106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~  180 (687)
                      ..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+.     ..+..+|.++
T Consensus       111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  190 (389)
T PRK11788        111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA  190 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence            77888888888888888888888888887788888888888888888888888888887776543     2345667777


Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHHcCC
Q 005632          181 LKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP-LKLKVKAGICYLRLGN  259 (687)
Q Consensus       181 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~  259 (687)
                      ...|++++|+..++++++..|++..  ++..+|.++...|++++|+..++++...    .+.. ..++..++.++...|+
T Consensus       191 ~~~~~~~~A~~~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        191 LARGDLDAARALLKKALAADPQCVR--ASILLGDLALAQGDYAAAIEALERVEEQ----DPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HhCCCHHHHHHHHHHHHhHCcCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHH----ChhhHHHHHHHHHHHHHHcCC
Confidence            7777777777777777777766543  5666777777777777777777777655    2222 2344455555555566


Q ss_pred             HHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHH
Q 005632          260 MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGY  315 (687)
Q Consensus       260 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  315 (687)
                      +++|+..+++++...|. . .....++.++...|++++|+..+++++.. .|++..
T Consensus       265 ~~~A~~~l~~~~~~~p~-~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~  317 (389)
T PRK11788        265 EAEGLEFLRRALEEYPG-A-DLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRG  317 (389)
T ss_pred             HHHHHHHHHHHHHhCCC-c-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHH
Confidence            66666555555554442 2 22345555555555555555555555544 444443

>PLN03077 Protein ECB2; Provisional

Probab=99.95  E-value=1e-23  Score=236.10  Aligned_cols=491  Identities=12%  Similarity=0.066  Sum_probs=348.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHc
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-PKDSALWKQLLTFAVQK  115 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  115 (687)
                      +-.....|.+.|++++|..+|+++..   .+...|..+...|.+.|++++|+..|.++.... ..+...+..+...+...
T Consensus       225 ~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~  301 (857)
T PLN03077        225 VNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL  301 (857)
T ss_pred             HhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence            33445667778888888888877642   245677778888888888888888888876543 12345566666777778


Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          116 GDTAQAMYYIRQAIRAE-PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      |+.+.|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.   ..+...|..+...|.+.|++++|+..|+
T Consensus       302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~  378 (857)
T PLN03077        302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYA  378 (857)
T ss_pred             CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence            88888888887777643 3356678888888888888888888888754   2355678888888888888888888888


Q ss_pred             HHHHh--CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632          195 EYLKV--HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW  272 (687)
Q Consensus       195 ~~~~~--~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  272 (687)
                      ++...  .|+..   .+..+...+...|++++|.+.+..+.+. +  ...+..++..+...|.+.|++++|..+|+++..
T Consensus       379 ~M~~~g~~Pd~~---t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g--~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~  452 (857)
T PLN03077        379 LMEQDNVSPDEI---TIASVLSACACLGDLDVGVKLHELAERK-G--LISYVVVANALIEMYSKCKCIDKALEVFHNIPE  452 (857)
T ss_pred             HHHHhCCCCCce---eHHHHHHHHhccchHHHHHHHHHHHHHh-C--CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence            77654  35544   4556667778888888888888887765 2  234556677788888888888888888888743


Q ss_pred             hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC-CCHHHH
Q 005632          273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDAR  351 (687)
Q Consensus       273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~  351 (687)
                          .+...|..+...|...|+.++|+.+|+++... .+.+...+..+-.++...|+.+.+.+.+..+++..- .+....
T Consensus       453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~  527 (857)
T PLN03077        453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP  527 (857)
T ss_pred             ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence                25567888888888888888888888888765 455666777777778888888888888888877532 344556


Q ss_pred             HHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHh
Q 005632          352 LTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALR  431 (687)
Q Consensus       352 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  431 (687)
                      ..+...|.+.|+.++|...|+..   .+ +            ..+|..+...|...|+.++|++.|.++.+..+.+    
T Consensus       528 naLi~~y~k~G~~~~A~~~f~~~---~~-d------------~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P----  587 (857)
T PLN03077        528 NALLDLYVRCGRMNYAWNQFNSH---EK-D------------VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP----  587 (857)
T ss_pred             hHHHHHHHHcCCHHHHHHHHHhc---CC-C------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Confidence            67889999999999999999886   22 2            2478899999999999999999999998664332    


Q ss_pred             hhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 005632          432 QKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDD  511 (687)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (687)
                                               +...|..+..+.......+.....  ++..           .    +-+      
T Consensus       588 -------------------------d~~T~~~ll~a~~~~g~v~ea~~~--f~~M-----------~----~~~------  619 (857)
T PLN03077        588 -------------------------DEVTFISLLCACSRSGMVTQGLEY--FHSM-----------E----EKY------  619 (857)
T ss_pred             -------------------------CcccHHHHHHHHhhcChHHHHHHH--HHHH-----------H----HHh------
Confidence                                     111122111111111222111100  1100           0    000      


Q ss_pred             hhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcc
Q 005632          512 ESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNH  591 (687)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  591 (687)
                                      ....+...+..++.++.+.|+.+||.++++... +.|       +..++..+..++...|+.+.
T Consensus       620 ----------------gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p-------d~~~~~aLl~ac~~~~~~e~  675 (857)
T PLN03077        620 ----------------SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITP-------DPAVWGALLNACRIHRHVEL  675 (857)
T ss_pred             ----------------CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCC-------CHHHHHHHHHHHHHcCChHH
Confidence                            011123445556667999999999999988762 122       23455555566677789999


Q ss_pred             hhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhh
Q 005632          592 GFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAK  640 (687)
Q Consensus       592 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  640 (687)
                      |....+.+++..|++...+.+++.+|...|+    +.++.+....+..+
T Consensus       676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~----~~~a~~vr~~M~~~  720 (857)
T PLN03077        676 GELAAQHIFELDPNSVGYYILLCNLYADAGK----WDEVARVRKTMREN  720 (857)
T ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHCCC----hHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999    78888888777775

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.95  E-value=5.4e-22  Score=218.14  Aligned_cols=375  Identities=13%  Similarity=0.085  Sum_probs=313.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSP--NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      ...++..-..+.+.|++++|+.+|+++...+.  .+...+..+...+...|..++|...|+....  | +...|..+...
T Consensus       370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a  446 (1060)
T PLN03218        370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSV  446 (1060)
T ss_pred             chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHH
Confidence            34444444567789999999999999987653  2344455566778889999999999988765  4 56788889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHH
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP-DNVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A  189 (687)
                      +...|++++|...++++.+... .+...+..+...|.+.|++++|.+.|+++.+... .+...|..+...|.+.|++++|
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA  526 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA  526 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            9999999999999999988653 4677899999999999999999999999987653 3788999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632          190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD  269 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  269 (687)
                      +..|+.+....-. ++...|..+...+.+.|++++|.+.+.++... ...-..+...+..+...|.+.|++++|..+|+.
T Consensus       527 l~lf~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        527 FGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             HHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999765321 22347899999999999999999999998764 111233456788888999999999999999999


Q ss_pred             HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc-CCCH
Q 005632          270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNI  348 (687)
Q Consensus       270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~  348 (687)
                      +...+...+...|..+...|.+.|++++|+.+|.++.......+...|..+...+.+.|++++|.++++.+.+.. +.+.
T Consensus       605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~  684 (1060)
T PLN03218        605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT  684 (1060)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            988775558889999999999999999999999999877555678899999999999999999999999998864 3467


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          349 DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       349 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      ..+..+...|.+.|++++|.++|+.+.......           +...|..+...|.+.|++++|.+.+.++.+..
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-----------dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G  749 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-----------TVSTMNALITALCEGNQLPKALEVLSEMKRLG  749 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            889999999999999999999999875432211           23588999999999999999999999997654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=2.4e-24  Score=220.55  Aligned_cols=304  Identities=14%  Similarity=0.121  Sum_probs=265.3

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHL  142 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l  142 (687)
                      .....+.+|..+...|++++|+..|.+++..+|++..++..+|.++...|++++|+..+++++...+..    ..++..+
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L  113 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL  113 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            345677779999999999999999999999999999999999999999999999999999998854332    2568899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHc
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---LSVIDLLVAILMEN  219 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~la~~~~~~  219 (687)
                      |.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+..   ...+..+|.++...
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  193 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR  193 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999998876643   12456789999999


Q ss_pred             chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHH
Q 005632          220 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL  299 (687)
Q Consensus       220 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  299 (687)
                      |++++|+..++++++.    .+....++..+|.++...|++++|+..++++....|......+..++.++...|++++|+
T Consensus       194 ~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        194 GDLDAARALLKKALAA----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             CCHHHHHHHHHHHHhH----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999998    666778899999999999999999999999998877655677889999999999999999


Q ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHhcCCCCc
Q 005632          300 KYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE--EAKEEEAITLLSPPKD  376 (687)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~  376 (687)
                      ..++++... .|+.. .+..++.++...|++++|+..++++++..|++......+...+..  .|+.++++..+++.+.
T Consensus       270 ~~l~~~~~~-~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        270 EFLRRALEE-YPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHHHHHHh-CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            999999877 66654 448899999999999999999999999999987665444443322  4588888888876553

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.94  E-value=2.8e-23  Score=226.91  Aligned_cols=466  Identities=11%  Similarity=0.042  Sum_probs=385.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSP--KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-PKDISLRIHLASF  145 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~  145 (687)
                      ..|..+...+...|++++|+..|..+....+  .+...+..+..++...++++.|...+..+.... ..+..++..+...
T Consensus        88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~  167 (697)
T PLN03081         88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM  167 (697)
T ss_pred             eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            3577777888899999999999999876542  356788889999999999999999999888743 2357788999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632          146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT  225 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A  225 (687)
                      |.+.|++++|.+.|+++.+   .+...|..+...|.+.|++++|+..|+++.+..+.. +...+..+...+...|..+.+
T Consensus       168 y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        168 HVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA-EPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHhcCCcHHHH
Confidence            9999999999999998753   356788999999999999999999999998765432 223677888888999999999


Q ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 005632          226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL  305 (687)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  305 (687)
                      .+.+..+.+. +  ...+..++..+...|.+.|++++|..+|+.+..    .+...|..+...|...|++++|+.+|+++
T Consensus       244 ~~l~~~~~~~-g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        244 QQLHCCVLKT-G--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             HHHHHHHHHh-C--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9988887765 2  234566778899999999999999999998742    37788999999999999999999999999


Q ss_pred             hhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCC
Q 005632          306 ETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS  384 (687)
Q Consensus       306 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  384 (687)
                      .......+..++..+..++...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.++|+++.+.+.     
T Consensus       317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-----  391 (697)
T PLN03081        317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL-----  391 (697)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe-----
Confidence            876556678899999999999999999999999999875 56778889999999999999999999998875322     


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccc
Q 005632          385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGI  464 (687)
Q Consensus       385 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (687)
                                .+|..+...|.+.|+.++|++.|.++.+....+                                     
T Consensus       392 ----------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-------------------------------------  424 (697)
T PLN03081        392 ----------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-------------------------------------  424 (697)
T ss_pred             ----------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------------------------
Confidence                      378899999999999999999999987553211                                     


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHH
Q 005632          465 RPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALA  544 (687)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  544 (687)
                                                                                         +...+..+...+.
T Consensus       425 -------------------------------------------------------------------d~~T~~~ll~a~~  437 (697)
T PLN03081        425 -------------------------------------------------------------------NHVTFLAVLSACR  437 (697)
T ss_pred             -------------------------------------------------------------------CHHHHHHHHHHHh
Confidence                                                                               1223556677788


Q ss_pred             HhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCc
Q 005632          545 SLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKIN  624 (687)
Q Consensus       545 ~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  624 (687)
                      ..|..++|..+++.+.......    .....+..++.++...|+.++|.+.++.+- ..| +..+|+.+...+...|+  
T Consensus       438 ~~g~~~~a~~~f~~m~~~~g~~----p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~--  509 (697)
T PLN03081        438 YSGLSEQGWEIFQSMSENHRIK----PRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKN--  509 (697)
T ss_pred             cCCcHHHHHHHHHHHHHhcCCC----CCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCC--
Confidence            9999999999999987632221    122345566777888999999999987652 233 45679999999999999  


Q ss_pred             ccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhh
Q 005632          625 SKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKL  674 (687)
Q Consensus       625 ~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  674 (687)
                        +..+...++.+....|++...+..+.+.+...|++++|...+...-..
T Consensus       510 --~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        510 --LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             --cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence              788888888888889999999999999999999999999999877553

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.94  E-value=9.8e-23  Score=205.95  Aligned_cols=572  Identities=15%  Similarity=0.140  Sum_probs=391.4

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      |.....++.+|.+|-.+|+.+++...+-.+-.++|++.+.|..++....++|++.+|.-+|.+|++.+|.+.......+.
T Consensus       170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~  249 (895)
T KOG2076|consen  170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSS  249 (895)
T ss_pred             ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLKC  183 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~  183 (687)
                      +|.+.|+...|...|.+++...|...     +.....+..+...++-+.|++.++.++....  ...+.+..++.+++..
T Consensus       250 L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~  329 (895)
T KOG2076|consen  250 LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN  329 (895)
T ss_pred             HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Confidence            99999999999999999999998321     2344457778888888999999999998322  2345567889999999


Q ss_pred             CChHHHHHHHHHHHHh--C----------------------CCC--CcHHH-HHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632          184 GQTARSIGILEEYLKV--H----------------------PSD--ADLSV-IDLLVAILMENNAYEKTLQHIEHAQIVR  236 (687)
Q Consensus       184 g~~~~A~~~~~~~~~~--~----------------------p~~--~~~~~-~~~la~~~~~~~~~~~A~~~~~~~~~~~  236 (687)
                      ..++.|..........  .                      |+.  ....+ ...++.+..+.++..+++..+..--.. 
T Consensus       330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~-  408 (895)
T KOG2076|consen  330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV-  408 (895)
T ss_pred             HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC-
Confidence            9999998887766551  0                      111  11123 445556666666666666555433221 


Q ss_pred             ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHH
Q 005632          237 FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL  316 (687)
Q Consensus       237 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  316 (687)
                        .....+..++.++.++...|++.+|+.++..+....+..+..+|+.+|.+|...|.+++|++.|++++.. .|++.++
T Consensus       409 --~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-~p~~~D~  485 (895)
T KOG2076|consen  409 --WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL-APDNLDA  485 (895)
T ss_pred             --ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCchhh
Confidence              1456678899999999999999999999999988877777889999999999999999999999999987 8999999


Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHhcCCCCcC-------Ccc
Q 005632          317 YLKLAECYLSLKERAHAIMFFYKALDRFEDN---------IDARLTLASLLLEEAKEEEAITLLSPPKDL-------DSL  380 (687)
Q Consensus       317 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~  380 (687)
                      ...++.++.++|++++|.+.+.....-++.+         .........++...|+.++=+......+..       .|.
T Consensus       486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~  565 (895)
T KOG2076|consen  486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPR  565 (895)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcch
Confidence            9999999999999999999999876333222         234456777888888776644332211110       000


Q ss_pred             ----------------cC----------------------------------CCCCCChhhhhHHHHHHHHHHHHHcCCc
Q 005632          381 ----------------DM----------------------------------NSDKSNPWWLNEKIIMKLCHIYRAKGMP  410 (687)
Q Consensus       381 ----------------~~----------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~  410 (687)
                                      ..                                  ....-..||   +.+..+..++...+++
T Consensus       566 ~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf---el~~e~i~~L~k~~r~  642 (895)
T KOG2076|consen  566 NKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF---ELFRELILSLAKLQRV  642 (895)
T ss_pred             HHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH---HHHHHHHHHHHHHHhH
Confidence                            00                                  001123345   5777788888899999


Q ss_pred             hHHHHHHHHHHHHhhh-hHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 005632          411 EDFVDAIFPLVCESLC-VEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEAL  489 (687)
Q Consensus       411 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (687)
                      ++|+.+...++....- .++...+......+       ...+...++              ...                
T Consensus       643 qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l-------~~s~~~~d~--------------~~a----------------  685 (895)
T KOG2076|consen  643 QEALSVVFTALEAYIFFQDSEIRKELQFLGL-------KASLYARDP--------------GDA----------------  685 (895)
T ss_pred             HHHHHHHHHHHhhhhhhccHHHHHHHHHHHH-------HHHHhcCCH--------------HHH----------------
Confidence            9998877777644321 11111111000000       000000000              000                


Q ss_pred             HHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcc---hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc
Q 005632          490 KEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNE---ENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNI  566 (687)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~  566 (687)
                           ..+++.-+..+.                   +-.++   ..|.+.+++   ....++-.-=...+..++...+. 
T Consensus       686 -----~~~lR~~i~~~~-------------------~~~~~~q~~l~n~~~s~---~~~~~q~v~~~R~~~~~~~~~~~-  737 (895)
T KOG2076|consen  686 -----FSYLRSVITQFQ-------------------FYLDVYQLNLWNLDFSY---FSKYGQRVCYLRLIMRLLVKNKD-  737 (895)
T ss_pred             -----HHHHHHHHHHHh-------------------hhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCcc-
Confidence                 000000000000                   00011   112222222   22333322222333334332222 


Q ss_pred             CchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhc--CC----cccccchHHHHHHHHhh
Q 005632          567 LPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMG--KI----NSKHSKHSKFIRYLRAK  640 (687)
Q Consensus       567 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--~~----~~~~~~a~~~~~~~~~~  640 (687)
                          ....+..+.+...+.++.+.-|+..+-.+...+|++|-.-.+++..+....  .-    .......-.|+.+-...
T Consensus       738 ----~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~l  813 (895)
T KOG2076|consen  738 ----DTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKEL  813 (895)
T ss_pred             ----CCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence                124556667788888899999999999999999999998888776644322  10    00011334555555443


Q ss_pred             CC--CCCCccceeccccccccchHHHHHHHHHHHhhCCCC
Q 005632          641 YK--DCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPEN  678 (687)
Q Consensus       641 ~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~  678 (687)
                      --  +...+...+|..++.-|=...|+.+|+++|.+.|.+
T Consensus       814 R~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~  853 (895)
T KOG2076|consen  814 RRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKD  853 (895)
T ss_pred             hccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccc
Confidence            22  356778899999999999999999999999998864

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=6.1e-25  Score=215.21  Aligned_cols=306  Identities=15%  Similarity=0.093  Sum_probs=279.7

Q ss_pred             HHHHHHHHHHHHc--CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSAL--GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        69 ~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      ..+..+|..|...  -+..+|+..|.+.-...++..+++..+|..|+.+++|++|..+|+.+-...|-..+..-....++
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L  397 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL  397 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence            3556666666544  45679999999977778888899999999999999999999999999999997776666666777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHH
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL  226 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~  226 (687)
                      ..+.+.-+---..+..+..+|+.|+.|..+|.+|.-+++.+.|++.|++++.++|...-  +|..+|.-+....+++.|.
T Consensus       398 WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY--ayTLlGhE~~~~ee~d~a~  475 (638)
T KOG1126|consen  398 WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY--AYTLLGHESIATEEFDKAM  475 (638)
T ss_pred             HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch--hhhhcCChhhhhHHHHhHH
Confidence            77666555555667788999999999999999999999999999999999999998875  7889999999999999999


Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632          227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE  306 (687)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  306 (687)
                      .+|+.++..    ++....+|+.+|.+|.++++++.|.-.|+++++.+|. +..+...+|.++.+.|+.++|+.+|+++.
T Consensus       476 ~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  476 KSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             HHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            999999999    9999999999999999999999999999999999996 89999999999999999999999999999


Q ss_pred             hccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632          307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM  382 (687)
Q Consensus       307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  382 (687)
                      .. +|.++-..+..|.++..++++++|+..++++.++.|+...++..+|.+|.+.|+.+.|+..|.-|.+.+|...
T Consensus       551 ~l-d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  551 HL-DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             hc-CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            88 8999999999999999999999999999999999999999999999999999999999999999999999764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.3e-23  Score=195.42  Aligned_cols=463  Identities=16%  Similarity=0.131  Sum_probs=343.0

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-----HH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVR--LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----SA  103 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~  103 (687)
                      +-....++.+|..|.....+.+|+..|+-+++  ..|+....-.++|.++++..+|.+|+++|+.++..-|.-     ..
T Consensus       198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik  277 (840)
T KOG2003|consen  198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK  277 (840)
T ss_pred             cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence            44566788999999999999999999998875  467777788899999999999999999999999887752     35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C---------CCH-H
Q 005632          104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--P---------DNV-D  171 (687)
Q Consensus       104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p---------~~~-~  171 (687)
                      .+.++|..+.+.|+|+.|+..|+.+.+..|+.. +-+++..+++..|+-++-.+.|.+++.+-  |         ++| +
T Consensus       278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~  356 (840)
T KOG2003|consen  278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD  356 (840)
T ss_pred             HHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence            577889999999999999999999999998655 45678889999999999999999998751  1         111 1


Q ss_pred             HHHHHH---HHH--HHcCChHHHHHHHHHHHHh-----CCCCCc---H---------------HHHHHHHHHHHHcchHH
Q 005632          172 ATKTGA---QLF--LKCGQTARSIGILEEYLKV-----HPSDAD---L---------------SVIDLLVAILMENNAYE  223 (687)
Q Consensus       172 ~~~~la---~~~--~~~g~~~~A~~~~~~~~~~-----~p~~~~---~---------------~~~~~la~~~~~~~~~~  223 (687)
                      .+.+-+   ..+  ....+-..|.+....+.++     .|+...   |               ..-...+..++++|+++
T Consensus       357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~  436 (840)
T KOG2003|consen  357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE  436 (840)
T ss_pred             HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence            111111   111  1122223334433333332     222110   0               11224456678888999


Q ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHH
Q 005632          224 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL--GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY  301 (687)
Q Consensus       224 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  301 (687)
                      .|++.++-.-+.   ++.....+..++..+++.+  .++..|..+...++..+.- ++.++.+.|.+.+..|++++|.+.
T Consensus       437 ~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~  512 (840)
T KOG2003|consen  437 GAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEF  512 (840)
T ss_pred             HHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHH
Confidence            988887665443   1222333444555555543  4677888888888776654 777888888888899999999999


Q ss_pred             HHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCccc
Q 005632          302 YHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD  381 (687)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  381 (687)
                      |++++.. +.....+++++|..+..+|+.++|+++|-+...+--++.+++..++.+|..+.+..+|++++.++...-|.+
T Consensus       513 ykeal~n-dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d  591 (840)
T KOG2003|consen  513 YKEALNN-DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND  591 (840)
T ss_pred             HHHHHcC-chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence            9988866 667788889999999999999999999998888888889999999999999999999999999998888887


Q ss_pred             CCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCccc
Q 005632          382 MNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSIL  461 (687)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (687)
                      +            .++..||.+|-+.|+..+|..++-.-.+-                                      
T Consensus       592 p------------~ilskl~dlydqegdksqafq~~ydsyry--------------------------------------  621 (840)
T KOG2003|consen  592 P------------AILSKLADLYDQEGDKSQAFQCHYDSYRY--------------------------------------  621 (840)
T ss_pred             H------------HHHHHHHHHhhcccchhhhhhhhhhcccc--------------------------------------
Confidence            7            48889999999998887775543332211                                      


Q ss_pred             ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHH
Q 005632          462 CGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCK  541 (687)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  541 (687)
                                                                                         +|-+.+.+--++-
T Consensus       622 -------------------------------------------------------------------fp~nie~iewl~a  634 (840)
T KOG2003|consen  622 -------------------------------------------------------------------FPCNIETIEWLAA  634 (840)
T ss_pred             -------------------------------------------------------------------cCcchHHHHHHHH
Confidence                                                                               2233334444555


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhc
Q 005632          542 ALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMG  621 (687)
Q Consensus       542 ~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  621 (687)
                      -|...+-.+.|+.+++++--+.|.      ...-.+..+.|....|++++|+..+++...+.|.+.+.+..+.++....|
T Consensus       635 yyidtqf~ekai~y~ekaaliqp~------~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  635 YYIDTQFSEKAINYFEKAALIQPN------QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCcc------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence            688888899999999999766655      23333444566667799999999999999999999999998888876666


Q ss_pred             C
Q 005632          622 K  622 (687)
Q Consensus       622 ~  622 (687)
                      -
T Consensus       709 l  709 (840)
T KOG2003|consen  709 L  709 (840)
T ss_pred             c
Confidence            4

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1e-22  Score=190.24  Aligned_cols=378  Identities=14%  Similarity=0.079  Sum_probs=302.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC--CCHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP--KDSALWKQLLT  110 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~  110 (687)
                      +.--++-.|.++-..|..+.|+..|..++...|-+..+|..|+.+...       ++........-|  .+.-.-..++.
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~  235 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK  235 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence            445556668888888888888888888888788887888777766432       222233332223  22233345677


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A  189 (687)
                      ++....+.++++.-++..... .|.+.-.-...|.+...+.++++|+..|+...+.+|-..+-.-....+++-.++-.+-
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL  315 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL  315 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence            777777888888888888887 7888888888899999999999999999999999887666666666666655554444


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632          190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD  269 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  269 (687)
                      .-+...+..++.-.++  ....+|+.|...++.++|+.+|++++++    +|....+|..+|.-|..+.+...|+..|++
T Consensus       316 s~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  316 SYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             HHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            4444555566555444  5678899999999999999999999999    999999999999999999999999999999


Q ss_pred             HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632          270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID  349 (687)
Q Consensus       270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  349 (687)
                      +++.+|. +..+|+.+|+.|.-.+.+.=|+-+|+++... .|.++..|..+|.||.+.++.++|+++|++++.....+..
T Consensus       390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~  467 (559)
T KOG1155|consen  390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS  467 (559)
T ss_pred             HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence            9999996 9999999999999999999999999999987 8999999999999999999999999999999999888899


Q ss_pred             HHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHH
Q 005632          350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEA  429 (687)
Q Consensus       350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  429 (687)
                      ++..||.++.+.++.++|..+|++.++........+ +    .-..+...|+.-+.+.+++++|..+....+.-..+.+-
T Consensus       468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~-~----~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ee  542 (559)
T KOG1155|consen  468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID-D----ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEE  542 (559)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc-h----HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHH
Confidence            999999999999999999999998877431111100 0    01246667999999999999999888888766544333


Q ss_pred             H
Q 005632          430 L  430 (687)
Q Consensus       430 ~  430 (687)
                      +
T Consensus       543 a  543 (559)
T KOG1155|consen  543 A  543 (559)
T ss_pred             H
Confidence            3

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.8e-22  Score=188.67  Aligned_cols=331  Identities=17%  Similarity=0.149  Sum_probs=280.6

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP--KDISLRIHLAS  144 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~  144 (687)
                      ++-.++..|.++...|....|+..|..++...|-+..+|..|+.+...       ++........-|  .+.-.-+.++.
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~  235 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK  235 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence            455678888888888888889988888888888888888888776532       223333333233  33344556777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHH
Q 005632          145 FYVEIGDYEKAAESYEQIQKL-FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE  223 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~  223 (687)
                      ++....+.++++.-++..... .|.+.-.-...|.+...+.++++|+..|+.+.+.+|-..+  -.....++++-..+-.
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~--dmdlySN~LYv~~~~s  313 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD--DMDLYSNVLYVKNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch--hHHHHhHHHHHHhhhH
Confidence            888888899999999998888 8888888899999999999999999999999999887665  3445566666555544


Q ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632          224 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH  303 (687)
Q Consensus       224 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  303 (687)
                      +---.-..+..+    +...++....+|..|...++.++|+.+|++++..+|. ...+|..+|.-|.+.++...|++.|+
T Consensus       314 kLs~LA~~v~~i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  314 KLSYLAQNVSNI----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             HHHHHHHHHHHh----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            444444555666    6777888888999999999999999999999999996 99999999999999999999999999


Q ss_pred             HhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCC
Q 005632          304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMN  383 (687)
Q Consensus       304 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  383 (687)
                      ++++. .|.+-.+|+.+|+.|.-++.+.=|+-+|+++++..|+++..|..||.||.+.++.++|+++|.+++.....+. 
T Consensus       389 rAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~-  466 (559)
T KOG1155|consen  389 RAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG-  466 (559)
T ss_pred             HHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-
Confidence            99998 8999999999999999999999999999999999999999999999999999999999999999998877655 


Q ss_pred             CCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          384 SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       384 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                                 .++..+|.+|.+.++.++|...|.+.++..
T Consensus       467 -----------~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  467 -----------SALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             -----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                       399999999999999999999999998765

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.93  E-value=5.4e-21  Score=210.36  Aligned_cols=369  Identities=14%  Similarity=0.087  Sum_probs=314.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCCHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-KDSALWKQLLTFAVQKGDTA  119 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~  119 (687)
                      ...+...|..++|..+++.+..  | +...|..+-..+...|++++|...|.++.+... .+...|..+...|.+.|+.+
T Consensus       413 i~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd  489 (1060)
T PLN03218        413 FKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD  489 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence            3456778999999999987754  4 567888888999999999999999999987653 35788999999999999999


Q ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632          120 QAMYYIRQAIRAEP-KDISLRIHLASFYVEIGDYEKAAESYEQIQKLF-PDNVDATKTGAQLFLKCGQTARSIGILEEYL  197 (687)
Q Consensus       120 ~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  197 (687)
                      +|...|+++..... .+..+|..+...|.+.|++++|++.|.++.... ..+...+..+...+.+.|++++|.+++.++.
T Consensus       490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~  569 (1060)
T PLN03218        490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK  569 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999988653 378899999999999999999999999997653 2357789999999999999999999999997


Q ss_pred             Hh-CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch
Q 005632          198 KV-HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI  276 (687)
Q Consensus       198 ~~-~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  276 (687)
                      .. .+-.++...+..+...|.+.|++++|.+.|+.+.+. +  .+.+...+..+...|.+.|++++|..+|.++....-.
T Consensus       570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~  646 (1060)
T PLN03218        570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK  646 (1060)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence            63 222233347889999999999999999999999876 1  2455678889999999999999999999999876544


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 005632          277 DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR--FEDNIDARLTL  354 (687)
Q Consensus       277 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  354 (687)
                      .+...+..+...+...|++++|.++++.+.+...+.+...+..+...|.+.|++++|.+.|+++.+.  .| +...|..+
T Consensus       647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~L  725 (1060)
T PLN03218        647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNAL  725 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Confidence            4778899999999999999999999999998766778899999999999999999999999998764  44 57789999


Q ss_pred             HHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Q 005632          355 ASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV  427 (687)
Q Consensus       355 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  427 (687)
                      ...|.+.|++++|.++++++.......           +..++..+...+.+.|++++|.+.+..+.+..+..
T Consensus       726 I~gy~k~G~~eeAlelf~eM~~~Gi~P-----------d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p  787 (1060)
T PLN03218        726 ITALCEGNQLPKALEVLSEMKRLGLCP-----------NTITYSILLVASERKDDADVGLDLLSQAKEDGIKP  787 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999876543211           23588889999999999999999999998876543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.4e-23  Score=197.17  Aligned_cols=368  Identities=20%  Similarity=0.199  Sum_probs=296.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      ..-.+|+..+..|+|+.|+.+|.+++.++|.+...|.+...+|...|+|++|++.-.+.++++|+.+..|..+|..+.-.
T Consensus         4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l   83 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL   83 (539)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------------C-------HHHHHHHHHHHHHhCCCC--
Q 005632          116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-----------------D-------YEKAAESYEQIQKLFPDN--  169 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-----------------~-------~~~A~~~~~~~~~~~p~~--  169 (687)
                      |+|++|+..|.+.++.+|++......++.++....                 +       .+.+.....+.+..+|.+  
T Consensus        84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            99999999999999999999998888888773220                 0       001111111111111100  


Q ss_pred             ------------------------------------------------------------HHHHHHHHHHHHHcCChHHH
Q 005632          170 ------------------------------------------------------------VDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       170 ------------------------------------------------------------~~~~~~la~~~~~~g~~~~A  189 (687)
                                                                                  ......+|...+...+++.|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                                                                        02345778888899999999


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC---CCchHHHHHHHHHHHHHcCCHHHHHHH
Q 005632          190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG---KELPLKLKVKAGICYLRLGNMEKAEIL  266 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~  266 (687)
                      ++.|..++.++ .+..  -+.+.+.+|+..|.+.+.+.....+++.....   ...-......+|..+...++++.|+.+
T Consensus       244 ~q~y~~a~el~-~~it--~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  244 IQHYAKALELA-TDIT--YLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY  320 (539)
T ss_pred             HHHHHHHHhHh-hhhH--HHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence            99999999999 5554  57789999999999999999998888761100   111123344567788889999999999


Q ss_pred             HHHHhhhCch-------------------------hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHH
Q 005632          267 FADLQWKNAI-------------------------DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA  321 (687)
Q Consensus       267 ~~~~~~~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la  321 (687)
                      |.+++.....                         ........-|..++..|+|..|+..|.+++.. .|+++.+|.++|
T Consensus       321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-~P~Da~lYsNRA  399 (539)
T KOG0548|consen  321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-DPEDARLYSNRA  399 (539)
T ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCchhHHHHHHH
Confidence            9997654321                         01122345588899999999999999999988 899999999999


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHH
Q 005632          322 ECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLC  401 (687)
Q Consensus       322 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la  401 (687)
                      .||..+|.+..|+...+.+++++|+...+++.-|.++..+.+|++|.+.|+++++.+|.+.            ++...+.
T Consensus       400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~------------e~~~~~~  467 (539)
T KOG0548|consen  400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA------------EAIDGYR  467 (539)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH------------HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999765            4666777


Q ss_pred             HHHHHcCCchHHHHHHHH
Q 005632          402 HIYRAKGMPEDFVDAIFP  419 (687)
Q Consensus       402 ~~~~~~g~~~~A~~~~~~  419 (687)
                      +++..+.....-.+..+.
T Consensus       468 rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  468 RCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHhhcCCCHHHHHHh
Confidence            777655333334444444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.9e-22  Score=189.67  Aligned_cols=461  Identities=15%  Similarity=0.080  Sum_probs=366.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      ......-+-+..+.+|.-|+-+-+++..+. .+|.--+.+|.+++-.|++..|......- .+...+....+..+.++..
T Consensus        17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~   94 (611)
T KOG1173|consen   17 EKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVK   94 (611)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHH
Confidence            334444456777889999999999998887 78888889999999999999988776654 5556677788889999999


Q ss_pred             cCCHHHHHHHHHHH------HHhCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632          115 KGDTAQAMYYIRQA------IRAEPKD-------------------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       115 ~g~~~~A~~~~~~a------~~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      ..++++|...+...      +..+|.+                   ....+..|.+|....+.++|...|.+++..++.+
T Consensus        95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c  174 (611)
T KOG1173|consen   95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKC  174 (611)
T ss_pred             HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhh
Confidence            99999999888733      1111211                   1235667888999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHcC--------C------hHHHHHHHHHHHHh-------------CCC------CCcHHHHHHHHHHH
Q 005632          170 VDATKTGAQLFLKCG--------Q------TARSIGILEEYLKV-------------HPS------DADLSVIDLLVAIL  216 (687)
Q Consensus       170 ~~~~~~la~~~~~~g--------~------~~~A~~~~~~~~~~-------------~p~------~~~~~~~~~la~~~  216 (687)
                      .++...+-....-..        .      ..+=.+.++...++             .|+      .....+....+..+
T Consensus       175 ~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~  254 (611)
T KOG1173|consen  175 FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRL  254 (611)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHH
Confidence            766554432221111        0      01111111111111             111      01123566788899


Q ss_pred             HHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChH
Q 005632          217 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSN  296 (687)
Q Consensus       217 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  296 (687)
                      +..++|.+..+..+..++.    +|.....+....-++...|+..+-..+-.+++...|. .+..|+.+|..|...|++.
T Consensus       255 y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~s  329 (611)
T KOG1173|consen  255 YYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYS  329 (611)
T ss_pred             HHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcH
Confidence            9999999999999999998    5555554444444889999988888888888888885 8999999999999999999


Q ss_pred             HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632          297 SALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD  376 (687)
Q Consensus       297 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  376 (687)
                      +|..+|.++... +|....+|...|..+...|..++|+..|..|-++.|+.....+.+|.-|..+++++-|.++|.++..
T Consensus       330 eARry~SKat~l-D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a  408 (611)
T KOG1173|consen  330 EARRYFSKATTL-DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA  408 (611)
T ss_pred             HHHHHHHHHhhc-CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            999999999987 8999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             CCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCC
Q 005632          377 LDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLP  456 (687)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (687)
                      +.|.++.            ++..+|.+.+..+.+.+|..+|+..+....+.                             
T Consensus       409 i~P~Dpl------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~-----------------------------  447 (611)
T KOG1173|consen  409 IAPSDPL------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSV-----------------------------  447 (611)
T ss_pred             cCCCcch------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhc-----------------------------
Confidence            9999986            89999999999999999999999887332110                             


Q ss_pred             CCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHH
Q 005632          457 TDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLI  536 (687)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  536 (687)
                                                                                           ....+-|....
T Consensus       448 ---------------------------------------------------------------------~~e~~~w~p~~  458 (611)
T KOG1173|consen  448 ---------------------------------------------------------------------LNEKIFWEPTL  458 (611)
T ss_pred             ---------------------------------------------------------------------cccccchhHHH
Confidence                                                                                 01122466688


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632          537 IDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV  616 (687)
Q Consensus       537 ~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  616 (687)
                      ..++.++-+.+++++|+..+++++...+.      ........+.++...|+.+.|+.++.+.|...|++..+-.++...
T Consensus       459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  459 NNLGHAYRKLNKYEEAIDYYQKALLLSPK------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHcCCC------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            89999999999999999999999998877      456677778889999999999999999999999999998888877


Q ss_pred             HHH
Q 005632          617 LSR  619 (687)
Q Consensus       617 ~~~  619 (687)
                      +..
T Consensus       533 ie~  535 (611)
T KOG1173|consen  533 IED  535 (611)
T ss_pred             HHh
Confidence            655

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=195.62  Aligned_cols=496  Identities=14%  Similarity=0.142  Sum_probs=330.9

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------CCC------chHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRL------------SPN------LPETYNTLGLAHSALGNHKSAFDFYVI   93 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~   93 (687)
                      ..+..++....+.-..|++.+|++..+.+=..            -|.      ...++++++.-|.....+.+|+..|+-
T Consensus       147 ~ev~ell~es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyei  226 (840)
T KOG2003|consen  147 KEVMELLEESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEI  226 (840)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhh
Confidence            35667777788888899999998877654211            122      234789999999999999999999998


Q ss_pred             Hhcc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           94 AAHL--SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQKLF  166 (687)
Q Consensus        94 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  166 (687)
                      .++-  .|+....-.++|.++++..+|.+|+.+|+-++..-|.-     ...+.++|..+.+.|+|+.|+..|+.+++..
T Consensus       227 ivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~  306 (840)
T KOG2003|consen  227 IVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA  306 (840)
T ss_pred             hhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC
Confidence            8753  58877888899999999999999999999999987753     4567889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--C---------CCCcHHHHHH-HHH-H--HHHcchHHHHHHHHHH
Q 005632          167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH--P---------SDADLSVIDL-LVA-I--LMENNAYEKTLQHIEH  231 (687)
Q Consensus       167 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p---------~~~~~~~~~~-la~-~--~~~~~~~~~A~~~~~~  231 (687)
                      |+.. +-++|..+++..|+-++-.+.|.+++.+.  |         +++....+.. +-. .  .+...+-..|.+.+-.
T Consensus       307 pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~t  385 (840)
T KOG2003|consen  307 PNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIIT  385 (840)
T ss_pred             ccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence            9654 44578889999999999999999998752  1         1122111111 101 1  1112223334444444


Q ss_pred             HHHHhcc---------------------CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632          232 AQIVRFS---------------------GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM  290 (687)
Q Consensus       232 ~~~~~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  290 (687)
                      +.++..+                     ..+....+-...+.-+++.|+++.|+++++-.-..+......+-.++..+++
T Consensus       386 a~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~f  465 (840)
T KOG2003|consen  386 AAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRF  465 (840)
T ss_pred             HHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHH
Confidence            4443211                     0111222333444556666777777666665544443333334444444444


Q ss_pred             hcC--ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632          291 SLG--HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI  368 (687)
Q Consensus       291 ~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  368 (687)
                      .+|  ++..|..+...++.. +..++.++.+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+
T Consensus       466 lqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeal  544 (840)
T KOG2003|consen  466 LQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEAL  544 (840)
T ss_pred             HhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHH
Confidence            432  566666666666654 55566666666666666777777777777777666666666777777777777777777


Q ss_pred             HhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhH
Q 005632          369 TLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQR  448 (687)
Q Consensus       369 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (687)
                      .+|-+.-.+-.+            +.++++.++.+|..+.+..+|++++.++.+.                         
T Consensus       545 d~f~klh~il~n------------n~evl~qianiye~led~aqaie~~~q~~sl-------------------------  587 (840)
T KOG2003|consen  545 DCFLKLHAILLN------------NAEVLVQIANIYELLEDPAQAIELLMQANSL-------------------------  587 (840)
T ss_pred             HHHHHHHHHHHh------------hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-------------------------
Confidence            666554333222            2246666777776666666666665554322                         


Q ss_pred             hhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccC
Q 005632          449 TKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLK  528 (687)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (687)
                                                                                                      
T Consensus       588 --------------------------------------------------------------------------------  587 (840)
T KOG2003|consen  588 --------------------------------------------------------------------------------  587 (840)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCch
Q 005632          529 NEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLS  608 (687)
Q Consensus       529 ~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  608 (687)
                      -|..+..+..++.+|-+.|+-..|.+..-..-+..|.+     -+.+.+ ++..++...=+++|+.++.+.--..|+-..
T Consensus       588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~n-----ie~iew-l~ayyidtqf~ekai~y~ekaaliqp~~~k  661 (840)
T KOG2003|consen  588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-----IETIEW-LAAYYIDTQFSEKAINYFEKAALIQPNQSK  661 (840)
T ss_pred             CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-----hHHHHH-HHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence            23344566678888888888888887766665555442     223333 344455566678889999888888887766


Q ss_pred             hhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccc
Q 005632          609 AWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFT  656 (687)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~  656 (687)
                      .-.+.+.++.++|+    +.++-........++|++..++-.+..++.
T Consensus       662 wqlmiasc~rrsgn----yqka~d~yk~~hrkfpedldclkflvri~~  705 (840)
T KOG2003|consen  662 WQLMIASCFRRSGN----YQKAFDLYKDIHRKFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             HHHHHHHHHHhccc----HHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence            66666778888888    888888888888889988877655554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.93  E-value=3e-20  Score=180.79  Aligned_cols=463  Identities=14%  Similarity=0.089  Sum_probs=354.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632           47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR  126 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  126 (687)
                      ..+.+.|+.++.++++.-|.+.+.|..++..    .-|+.|...+.++-+.-|.++.+|..-+.+-...|+.+.-.....
T Consensus       389 lE~~~darilL~rAveccp~s~dLwlAlarL----etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~  464 (913)
T KOG0495|consen  389 LEEPEDARILLERAVECCPQSMDLWLALARL----ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIID  464 (913)
T ss_pred             ccChHHHHHHHHHHHHhccchHHHHHHHHHH----HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4455668888888888888888877766644    567888888888888888888888888888888887776666666


Q ss_pred             HHHHhC------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632          127 QAIRAE------------------------------------------PKDISLRIHLASFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus       127 ~a~~~~------------------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  164 (687)
                      +.+..-                                          .+....|..-+..+...+-++-|...|..+++
T Consensus       465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq  544 (913)
T KOG0495|consen  465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ  544 (913)
T ss_pred             HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence            554310                                          11223466677777888888999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchH
Q 005632          165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL  244 (687)
Q Consensus       165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  244 (687)
                      .+|....+|...+..--.-|..++-..++++++...|....  .|...+..+...|+...|...+.++.+.    +|.+.
T Consensus       545 vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~--lwlM~ake~w~agdv~~ar~il~~af~~----~pnse  618 (913)
T KOG0495|consen  545 VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEI--LWLMYAKEKWKAGDVPAARVILDQAFEA----NPNSE  618 (913)
T ss_pred             hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHhcCCcHHHHHHHHHHHHh----CCCcH
Confidence            99999999999888888889999999999999999998775  6888888899999999999999999998    88888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 005632          245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECY  324 (687)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~  324 (687)
                      .+|+....+.....+++.|..+|.++....+  ...+|+.-+.+...+++.++|+.+++++++. .|+...+|..+|+++
T Consensus       619 eiwlaavKle~en~e~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~  695 (913)
T KOG0495|consen  619 EIWLAAVKLEFENDELERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE  695 (913)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence            9999999999999999999999999877655  7788888899999999999999999999987 899999999999999


Q ss_pred             HHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHH
Q 005632          325 LSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY  404 (687)
Q Consensus       325 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  404 (687)
                      .++++.+.|...|...++..|+.+..|..|+.+-.+.|..-.|..+++++.-.+|.+..            .+....++-
T Consensus       696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~------------lwle~Ir~E  763 (913)
T KOG0495|consen  696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL------------LWLESIRME  763 (913)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch------------hHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998874            778888888


Q ss_pred             HHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHH
Q 005632          405 RAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQ  484 (687)
Q Consensus       405 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (687)
                      .+.|+.++|...+.+.+++.+...-....               .-++...+.-              ..+..+      
T Consensus       764 lR~gn~~~a~~lmakALQecp~sg~LWaE---------------aI~le~~~~r--------------kTks~D------  808 (913)
T KOG0495|consen  764 LRAGNKEQAELLMAKALQECPSSGLLWAE---------------AIWLEPRPQR--------------KTKSID------  808 (913)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccchhHHH---------------HHHhccCccc--------------chHHHH------
Confidence            99999999998888888887543111110               0011100000              000000      


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 005632          485 KKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAY  564 (687)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~  564 (687)
                                                              .+-.-..+...++..+.++....+++.|..++.+++..++
T Consensus       809 ----------------------------------------ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~  848 (913)
T KOG0495|consen  809 ----------------------------------------ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP  848 (913)
T ss_pred             ----------------------------------------HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence                                                    0111222344666777777777778888888777777665


Q ss_pred             ccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHH
Q 005632          565 NILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYK  615 (687)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  615 (687)
                      +      .-+.+.......+..|.-+.-.+.+.......|..-..|.....
T Consensus       849 d------~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK  893 (913)
T KOG0495|consen  849 D------NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK  893 (913)
T ss_pred             c------cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence            5      23444444444555565556666666666666666555554443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.92  E-value=8.1e-21  Score=185.20  Aligned_cols=171  Identities=21%  Similarity=0.319  Sum_probs=164.6

Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632           30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL  109 (687)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  109 (687)
                      +||.-..+|.++.-.+..++|...++..+.+++..|++++.+...|..+..+|+-++|..+...++..++.+...|..+|
T Consensus         3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g   82 (700)
T KOG1156|consen    3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG   82 (700)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence            67888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632          110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       110 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A  189 (687)
                      .++....+|++|+.+|+.|+...|+|...+.-++.+..++++++.....-.+.++..|..-..|+..+..+...|++..|
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC
Q 005632          190 IGILEEYLKVH  200 (687)
Q Consensus       190 ~~~~~~~~~~~  200 (687)
                      ...++...+..
T Consensus       163 ~~il~ef~~t~  173 (700)
T KOG1156|consen  163 LEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHhh
Confidence            99988877664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.91  E-value=2.5e-21  Score=196.70  Aligned_cols=589  Identities=11%  Similarity=-0.004  Sum_probs=374.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632           47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR  126 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  126 (687)
                      ..+...|...|-+++.++|..+.++..+|.+|....+...|..+|++|.++++.+..++-..+..|....+++.|....-
T Consensus       471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          127 QAIRAEPKD--ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       127 ~a~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      .+-+..|..  ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~  630 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK  630 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence            666665543  345667999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc------
Q 005632          205 DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS---GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA------  275 (687)
Q Consensus       205 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------  275 (687)
                      -  ..+..+.+....|+|.+|+..+...+.....   ........+...+..+...|-...|...+++.++...      
T Consensus       631 y--~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~  708 (1238)
T KOG1127|consen  631 Y--GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS  708 (1238)
T ss_pred             H--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence            4  6778889999999999999999988876321   1122334555555555556666666666665433211      


Q ss_pred             -hhhHHHHHHHHHHHH-------------------h----cCCh------HHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 005632          276 -IDHADLITEVADTLM-------------------S----LGHS------NSALKYYHFLETNAGTDNGYLYLKLAECYL  325 (687)
Q Consensus       276 -~~~~~~~~~la~~~~-------------------~----~g~~------~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  325 (687)
                       .++.-.|..++.++.                   .    .+..      --+.+++-..+..  ...+..|+++|..|.
T Consensus       709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinyl  786 (1238)
T KOG1127|consen  709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYL  786 (1238)
T ss_pred             hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHH
Confidence             112222322222221                   0    1110      1122222222221  223567777777766


Q ss_pred             H--------hhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHH
Q 005632          326 S--------LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKII  397 (687)
Q Consensus       326 ~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  397 (687)
                      .        +.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.....|....            +|
T Consensus       787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~------------~W  853 (1238)
T KOG1127|consen  787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC------------QW  853 (1238)
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh------------he
Confidence            5        2233467888888888888888888888777 5557788888888888877777664            66


Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccC----CCCCcccccccCCCchhHH
Q 005632          398 MKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNN----LPTDSILCGIRPAAPKSEL  473 (687)
Q Consensus       398 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  473 (687)
                      .++|.++.+..+++.|...|..+..-.|..-...- ++.......+....+..+..-    .....-..++.+.      
T Consensus       854 ~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~Wl-G~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw------  926 (1238)
T KOG1127|consen  854 LNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWL-GEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW------  926 (1238)
T ss_pred             eccceeEEecccHHHhhHHHHhhhhcCchhhHHHH-HHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH------
Confidence            78888888888888776666665433222111110 001111111111111111111    0000000001100      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHH
Q 005632          474 LVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEAS  553 (687)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~  553 (687)
                        .+.....++++..+.  ....    ..           .-+.+...+...+...|+..-++...+.++-.++.+.+|.
T Consensus       927 --~c~te~h~~Ng~~e~--~I~t----~~-----------ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~  987 (1238)
T KOG1127|consen  927 --LCATEIHLQNGNIEE--SINT----AR-----------KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAAL  987 (1238)
T ss_pred             --HHHHHHHHhccchHH--HHHH----hh-----------hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHH
Confidence              111111122211100  0000    00           0000001111124567777777777788888899999999


Q ss_pred             HHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHH-hhCCCCchhhHHHHHHHHHhcCCcccccchHH
Q 005632          554 EIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYIL-QLHPYSLSAWNCYYKVLSRMGKINSKHSKHSK  632 (687)
Q Consensus       554 ~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~  632 (687)
                      ....+.+.+-...+...+...+.-..+++.+..|+++.|........ +.+.+....-  +  ...-.++    +.+...
T Consensus       988 ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~--l--~lFfknd----f~~sl~ 1059 (1238)
T KOG1127|consen  988 ELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD--L--TLFFKND----FFSSLE 1059 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh--H--HHHHHhH----HHHHHH
Confidence            88877765544444444444566677888889999987755442221 1111111000  0  0122444    567788


Q ss_pred             HHHHHHhhCCCCCCc---cceeccccccccchHHHHHHHHHHHhhCCCChhhhhhcc
Q 005632          633 FIRYLRAKYKDCVPP---IIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL  686 (687)
Q Consensus       633 ~~~~~~~~~p~~~~~---~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~~~  686 (687)
                      ++++++.-...+...   +.-.+.+-..++..+.|......++.+.|-+....|+|+
T Consensus      1060 ~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~ 1116 (1238)
T KOG1127|consen 1060 FFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLP 1116 (1238)
T ss_pred             HHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHH
Confidence            888888764443332   223344444577888899999999999998877776653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.3e-21  Score=186.11  Aligned_cols=295  Identities=16%  Similarity=0.169  Sum_probs=255.5

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL  108 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  108 (687)
                      .+..+..-+..+|..++..++|.+..++++..++.+|-++.++-...-++...|+..+-...-.+.++..|+.+..|+..
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV  318 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV  318 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence            34456666778899999999999999999999999998888776555589999998888888888889999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                      |..|...|++.+|..+|.++..++|....+|...|..+...|..++|+.+|..+-++.|......+.+|.-|...++++-
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888888889999999999999


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632          189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFA  268 (687)
Q Consensus       189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  268 (687)
                      |...|.+++.+.|.++-  ++..+|.+.+..+.|.+|..+|+.++...+                               
T Consensus       399 Ae~Ff~~A~ai~P~Dpl--v~~Elgvvay~~~~y~~A~~~f~~~l~~ik-------------------------------  445 (611)
T KOG1173|consen  399 AEKFFKQALAIAPSDPL--VLHELGVVAYTYEEYPEALKYFQKALEVIK-------------------------------  445 (611)
T ss_pred             HHHHHHHHHhcCCCcch--hhhhhhheeehHhhhHHHHHHHHHHHHHhh-------------------------------
Confidence            99999999999999886  788899999999999999999998874411                               


Q ss_pred             HHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH
Q 005632          269 DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI  348 (687)
Q Consensus       269 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  348 (687)
                      .+....+ .....+.++|.++.+.+.+++|+..+++++.. .|.++.++..+|.+|..+|+++.|+++|.+++-+.|++.
T Consensus       446 ~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~  523 (611)
T KOG1173|consen  446 SVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI  523 (611)
T ss_pred             hcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence            1111111 24556889999999999999999999999987 899999999999999999999999999999999999997


Q ss_pred             HHHHHHHHHH
Q 005632          349 DARLTLASLL  358 (687)
Q Consensus       349 ~~~~~la~~~  358 (687)
                      .+...|+.+.
T Consensus       524 ~~~~lL~~ai  533 (611)
T KOG1173|consen  524 FISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHH
Confidence            7766666443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.1e-20  Score=181.02  Aligned_cols=340  Identities=16%  Similarity=0.130  Sum_probs=279.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      ....|...+..|+++.|+.+|..++.++|.+...+.+...+|..+|+|++|+.--.+.++++|+-+..|..+|..+..+|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------hHHHHHHHHHHHHhCCC----
Q 005632          151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ------------------------TARSIGILEEYLKVHPS----  202 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~------------------------~~~A~~~~~~~~~~~p~----  202 (687)
                      +|++|+..|.+.++.+|++......++.++...-.                        .+.+.......+..+|.    
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence            99999999999999999999888888877622200                        00111111111111100    


Q ss_pred             ----------------------------------CC------------c----------HHHHHHHHHHHHHcchHHHHH
Q 005632          203 ----------------------------------DA------------D----------LSVIDLLVAILMENNAYEKTL  226 (687)
Q Consensus       203 ----------------------------------~~------------~----------~~~~~~la~~~~~~~~~~~A~  226 (687)
                                                        .+            +          ..-...+|.......++..|+
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~  244 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI  244 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence                                              00            0          023456889999999999999


Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh------hHHHHHHHHHHHHhcCChHHHHH
Q 005632          227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID------HADLITEVADTLMSLGHSNSALK  300 (687)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~  300 (687)
                      +.+..++.+    . .....+.+.+-+|+..|.+.+++....++++.....      -......+|..+...++++.|+.
T Consensus       245 q~y~~a~el----~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~  319 (539)
T KOG0548|consen  245 QHYAKALEL----A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK  319 (539)
T ss_pred             HHHHHHHhH----h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence            999999999    6 777778889999999999999999988877654421      12234456778888899999999


Q ss_pred             HHHHhhhcc-------------------------CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632          301 YYHFLETNA-------------------------GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA  355 (687)
Q Consensus       301 ~~~~~~~~~-------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  355 (687)
                      +|++++...                         .|....--...|..++..|+|..|+..|.+++..+|+++..+.+.+
T Consensus       320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA  399 (539)
T KOG0548|consen  320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA  399 (539)
T ss_pred             HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence            999876431                         2223333455688999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Q 005632          356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV  427 (687)
Q Consensus       356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  427 (687)
                      .+|.++|.+..|+...+.+++.+|...            ..+..-|.++..+.+|++|++.|+..++..+..
T Consensus       400 ac~~kL~~~~~aL~Da~~~ieL~p~~~------------kgy~RKg~al~~mk~ydkAleay~eale~dp~~  459 (539)
T KOG0548|consen  400 ACYLKLGEYPEALKDAKKCIELDPNFI------------KAYLRKGAALRAMKEYDKALEAYQEALELDPSN  459 (539)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCchHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence            999999999999999999999988754            588999999999999999999999998776554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.89  E-value=6.9e-19  Score=175.37  Aligned_cols=548  Identities=17%  Similarity=0.101  Sum_probs=383.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHH-----------HHHHHHHcCChHHHHHHHHHHhccC-
Q 005632           39 GEASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNT-----------LGLAHSALGNHKSAFDFYVIAAHLS-   98 (687)
Q Consensus        39 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~-----------l~~~~~~~g~~~~A~~~~~~al~~~-   98 (687)
                      ..+..+-+-|++.+|.+-+...++.        .|.....-..           +...+...+...+++..+.+++... 
T Consensus       179 lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w  258 (799)
T KOG4162|consen  179 LKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYRRALLRSW  258 (799)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhhHHhhccc
Confidence            3456666677999999999888764        2221111111           2334445677788888888877543 


Q ss_pred             CCCH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCC
Q 005632           99 PKDS----------------------ALWKQLLTFAVQKGDTAQAMYYIRQAIR-----AEPKDISLRIHLASFYVEIGD  151 (687)
Q Consensus        99 p~~~----------------------~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~~~~~la~~~~~~g~  151 (687)
                      +.++                      ........++.-..+.++++-..-..+.     ...+++.++-.+...+...|+
T Consensus       259 ~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~  338 (799)
T KOG4162|consen  259 SLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQ  338 (799)
T ss_pred             ccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            1111                      1111223333444455555443332222     123567788889999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCCcHHHHHHHH-HHHHHcchHHHHHHH
Q 005632          152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH--PSDADLSVIDLLV-AILMENNAYEKTLQH  228 (687)
Q Consensus       152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~la-~~~~~~~~~~~A~~~  228 (687)
                      +..+.+.|++++...-...+.|+.++..+...|.-..|+.+++..+...  |+++.  .+...+ .+..+.+.+++++.+
T Consensus       339 f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s--~~Lmasklc~e~l~~~eegldY  416 (799)
T KOG4162|consen  339 FEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS--VLLMASKLCIERLKLVEEGLDY  416 (799)
T ss_pred             HHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch--HHHHHHHHHHhchhhhhhHHHH
Confidence            9999999999998888888999999999999999999999999999888  66554  344444 445567999999999


Q ss_pred             HHHHHHHhc-cCCCchHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChH
Q 005632          229 IEHAQIVRF-SGKELPLKLKVKAGICYLRL-----------GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSN  296 (687)
Q Consensus       229 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  296 (687)
                      ..+++.... ......+..+..+|.+|..+           ....++++.++++++.+|. ++.+.+.++.-|...++.+
T Consensus       417 A~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~  495 (799)
T KOG4162|consen  417 AQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLT  495 (799)
T ss_pred             HHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHH
Confidence            999998532 23445567778888887643           2346788889999888885 8899999999999999999


Q ss_pred             HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632          297 SALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD  376 (687)
Q Consensus       297 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  376 (687)
                      .|.+...+++.....+++..|..++.++...+++.+|+...+.+++-.|+|.........+-...|+.++|+..+...+.
T Consensus       496 sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~  575 (799)
T KOG4162|consen  496 SALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA  575 (799)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence            99999999998866778999999999999999999999999999999999877777777777778999988887765554


Q ss_pred             CCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCC
Q 005632          377 LDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLP  456 (687)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (687)
                      ...........   .........-+.+....++..+|++....+....-                               
T Consensus       576 ~we~~~~~q~~---~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-------------------------------  621 (799)
T KOG4162|consen  576 LWEAEYGVQQT---LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-------------------------------  621 (799)
T ss_pred             HHHhhhhHhhh---hhhhhhhhhhcccccCcccccccchhhHHHHHHHH-------------------------------
Confidence            32211100000   00000011111111111222222222222221110                               


Q ss_pred             CCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcch--h--
Q 005632          457 TDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEE--N--  532 (687)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--  532 (687)
                                             .                   ++.....+     .      .-+...+...|+  |  
T Consensus       622 -----------------------~-------------------~~~~~~se-----~------~Lp~s~~~~~~~~~~~~  648 (799)
T KOG4162|consen  622 -----------------------S-------------------QLKSAGSE-----L------KLPSSTVLPGPDSLWYL  648 (799)
T ss_pred             -----------------------h-------------------hhhhcccc-----c------ccCcccccCCCCchHHH
Confidence                                   0                   00000000     0      000011122222  1  


Q ss_pred             -hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhH
Q 005632          533 -QCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWN  611 (687)
Q Consensus       533 -~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  611 (687)
                       ..+....+..+...+..++|...+..+-.+.+.      ...++++.+.++...|+..+|...|...+..+|++.....
T Consensus       649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~  722 (799)
T KOG4162|consen  649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL------SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT  722 (799)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH
Confidence             123335566788888899998888888776655      5688889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCChhhhhh
Q 005632          612 CYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENPLINLK  684 (687)
Q Consensus       612 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p~~~l~  684 (687)
                      .++.++.+.|+  .....+..+++.+++.+|.++.+|..+|.++...|+.+.|..+|.-|+++.+.+|+..|+
T Consensus       723 Ala~~lle~G~--~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs  793 (799)
T KOG4162|consen  723 ALAELLLELGS--PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS  793 (799)
T ss_pred             HHHHHHHHhCC--cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence            99999999996  344455669999999999999999999999999999999999999999999999988775

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.89  E-value=5.9e-21  Score=171.61  Aligned_cols=380  Identities=19%  Similarity=0.187  Sum_probs=239.3

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA  143 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  143 (687)
                      +|.+..-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+..-|+.-+.+++++.|+...+....|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            34455556666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632          144 SFYVEIGDYEKAAESYEQIQKLFPDNVD---ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN  220 (687)
Q Consensus       144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~  220 (687)
                      .+++++|+++.|...|..++..+|++..   +...++.+-.                        ...+......+...|
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e------------------------~~~l~~ql~s~~~~G  169 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE------------------------HWVLVQQLKSASGSG  169 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH------------------------HHHHHHHHHHHhcCC
Confidence            6666666666666666666666664321   1111111000                        001112223334445


Q ss_pred             hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHH
Q 005632          221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK  300 (687)
Q Consensus       221 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  300 (687)
                      ++..|+.++...+++    .+.+..++...+.||...|++..|+..++.+-.... ++.+.++.++.+++..|+.+.++.
T Consensus       170 D~~~ai~~i~~llEi----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~  244 (504)
T KOG0624|consen  170 DCQNAIEMITHLLEI----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLK  244 (504)
T ss_pred             chhhHHHHHHHHHhc----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHH
Confidence            556666666666655    555555555566666666666666665555544333 355556666666666666666666


Q ss_pred             HHHHhhhccCCCcHHHH------------HHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHcCCH
Q 005632          301 YYHFLETNAGTDNGYLY------------LKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR----LTLASLLLEEAKE  364 (687)
Q Consensus       301 ~~~~~~~~~~~~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~la~~~~~~g~~  364 (687)
                      ..++.++. +|+.-..+            ..-+.-....++|.++++..+++++.+|..+.+.    ..+..|+...|++
T Consensus       245 ~iRECLKl-dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~  323 (504)
T KOG0624|consen  245 EIRECLKL-DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF  323 (504)
T ss_pred             HHHHHHcc-CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence            66665555 44433222            1112334566889999999999999999855443    4477888889999


Q ss_pred             HHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhh-hhhhhhhh
Q 005632          365 EEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVK-VKRRLTKG  443 (687)
Q Consensus       365 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  443 (687)
                      .+|+..+.++++.+|.+.            +++...+.+|.....|+.|+..|+...+.....+...+... .++....+
T Consensus       324 ~eAiqqC~evL~~d~~dv------------~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs  391 (504)
T KOG0624|consen  324 GEAIQQCKEVLDIDPDDV------------QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS  391 (504)
T ss_pred             HHHHHHHHHHHhcCchHH------------HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence            999999999999999876            59999999999999999999999999876655444444322 11111222


Q ss_pred             hhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhh
Q 005632          444 ILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQ  515 (687)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (687)
                      -.+..-+++.+.++                              +.++|....|.+.+..|+|+++.++..+
T Consensus       392 ~kRDYYKILGVkRn------------------------------AsKqEI~KAYRKlAqkWHPDNFqdEeEK  433 (504)
T KOG0624|consen  392 GKRDYYKILGVKRN------------------------------ASKQEITKAYRKLAQKWHPDNFQDEEEK  433 (504)
T ss_pred             ccchHHHHhhhccc------------------------------ccHHHHHHHHHHHHHhcCCccccCHHHH
Confidence            22333445554433                              3345555677888899999998886643

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-19  Score=180.45  Aligned_cols=366  Identities=17%  Similarity=0.074  Sum_probs=296.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC--CCCHHHHHHHHH-HHHHcCC
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--PKDSALWKQLLT-FAVQKGD  117 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~g~  117 (687)
                      ...+...|+++.+.+.|++++...-...+.|+.++.++...|.-..|+..++..+...  |+++..+...+. |..+.+.
T Consensus       330 t~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~  409 (799)
T KOG4162|consen  330 TFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKL  409 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhh
Confidence            5567788999999999999998877788999999999999999999999999999888  777776666555 4556789


Q ss_pred             HHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632          118 TAQAMYYIRQAIRAE-----PKDISLRIHLASFYVEIG-----------DYEKAAESYEQIQKLFPDNVDATKTGAQLFL  181 (687)
Q Consensus       118 ~~~A~~~~~~a~~~~-----p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  181 (687)
                      +++++.+..+++...     --.+..+..+|.+|..+-           ...++++.++++++.+|+|+.+.+.++.-|.
T Consensus       410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A  489 (799)
T KOG4162|consen  410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYA  489 (799)
T ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            999999999998833     123556777777775432           2568899999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHH
Q 005632          182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME  261 (687)
Q Consensus       182 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (687)
                      .+++.+.|....+++++.++.+.. .+|..++.++...+++.+|+...+.++..++.    +.........+-...++.+
T Consensus       490 ~~R~l~sAl~~~~eaL~l~~~~~~-~~whLLALvlSa~kr~~~Al~vvd~al~E~~~----N~~l~~~~~~i~~~~~~~e  564 (799)
T KOG4162|consen  490 EQRQLTSALDYAREALALNRGDSA-KAWHLLALVLSAQKRLKEALDVVDAALEEFGD----NHVLMDGKIHIELTFNDRE  564 (799)
T ss_pred             HHHhHHHHHHHHHHHHHhcCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh----hhhhchhhhhhhhhcccHH
Confidence            999999999999999999777654 48999999999999999999999999988442    2222222222222233333


Q ss_pred             HHHHHHHHHhhhC--------------------------------------------------------c------h---
Q 005632          262 KAEILFADLQWKN--------------------------------------------------------A------I---  276 (687)
Q Consensus       262 ~A~~~~~~~~~~~--------------------------------------------------------~------~---  276 (687)
                      +++..+...+...                                                        |      .   
T Consensus       565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~  644 (799)
T KOG4162|consen  565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS  644 (799)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc
Confidence            3333322211100                                                        0      0   


Q ss_pred             ---hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632          277 ---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT  353 (687)
Q Consensus       277 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  353 (687)
                         .....|...+..+...+..++|..++.++... .|..+..|+..|.++...|++.+|.+.|..++.++|+++.+...
T Consensus       645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A  723 (799)
T KOG4162|consen  645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA  723 (799)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence               12345678889999999999999999999887 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHH--hcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          354 LASLLLEEAKEEEAIT--LLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       354 la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      +|.++.+.|+..-|..  ++..++..+|.++            ++|+.+|.++..+|+.++|.++|...++--
T Consensus       724 la~~lle~G~~~la~~~~~L~dalr~dp~n~------------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  724 LAELLLELGSPRLAEKRSLLSDALRLDPLNH------------EAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            9999999999888877  9999999999887            588999999999999999999999988543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.89  E-value=1.1e-22  Score=196.59  Aligned_cols=263  Identities=21%  Similarity=0.232  Sum_probs=106.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632          106 KQLLTFAVQKGDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC  183 (687)
Q Consensus       106 ~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  183 (687)
                      ..+|.+++..|++++|++++.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            35677777778888888877654433  367777777777777788888888888888887777777777777777 677


Q ss_pred             CChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHH
Q 005632          184 GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA  263 (687)
Q Consensus       184 g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  263 (687)
                      +++++|+.++++..+..++. .  .+...+.++...++++++...++++....  ..+.+...+..+|.++.+.|++++|
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~-~--~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A  165 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGDP-R--YLLSALQLYYRLGDYDEAEELLEKLEELP--AAPDSARFWLALAEIYEQLGDPDKA  165 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred             cccccccccccccccccccc-c--hhhHHHHHHHHHhHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            78888888777776655432 2  45566677777788888888877766541  1245667777788888888888888


Q ss_pred             HHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632          264 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR  343 (687)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  343 (687)
                      +..+++++...|. ++.+...++.++...|+++++...+...... .|.++..+..+|.++..+|++++|+.+|+++++.
T Consensus       166 ~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~  243 (280)
T PF13429_consen  166 LRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL  243 (280)
T ss_dssp             HHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence            8888888887774 7788888888888888888888888777765 4777778888888888888888888888888888


Q ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632          344 FEDNIDARLTLASLLLEEAKEEEAITLLSPPKD  376 (687)
Q Consensus       344 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  376 (687)
                      +|+++.++..+|.++...|+.++|..+..++..
T Consensus       244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             STT-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            888888888888888888888888888887654

>PRK12370 invasion protein regulator; Provisional

Probab=99.88  E-value=3.6e-20  Score=195.37  Aligned_cols=251  Identities=13%  Similarity=0.028  Sum_probs=164.4

Q ss_pred             ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005632           83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK---------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE  153 (687)
Q Consensus        83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  153 (687)
                      ++++|+.+|+++++++|+++.++..+|.++...         +++++|+..++++++++|+++.++..+|.++...|+++
T Consensus       276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~  355 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI  355 (553)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence            356777777777777777777777777665432         33677777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632          154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ  233 (687)
Q Consensus       154 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  233 (687)
                      +|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+..  .+..++.++...|++++|+..+++++
T Consensus       356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--~~~~~~~~~~~~g~~eeA~~~~~~~l  433 (553)
T PRK12370        356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--AGITKLWITYYHTGIDDAIRLGDELR  433 (553)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777654  23344555666677777777777766


Q ss_pred             HHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCc
Q 005632          234 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN  313 (687)
Q Consensus       234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  313 (687)
                      ...   .|.....+..+|.++...|++++|...+.++....| ........++..+...|+  +|...++++.+. ....
T Consensus       434 ~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~-~~~~  506 (553)
T PRK12370        434 SQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNSE--RALPTIREFLES-EQRI  506 (553)
T ss_pred             Hhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccHH--HHHHHHHHHHHH-hhHh
Confidence            551   244455666677777777777777777777655544 356666666666666663  666666655543 1111


Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632          314 GYLYLKLAECYLSLKERAHAIMFFYKALDR  343 (687)
Q Consensus       314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  343 (687)
                      +.-......++.-.|+.+.+..+ +++.+.
T Consensus       507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            11122266667777777776666 555543

>TIGR00540 hemY_coli hemY protein

Probab=99.88  E-value=2.2e-19  Score=182.52  Aligned_cols=300  Identities=14%  Similarity=0.084  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-HHHHHHHHHHHH
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFAVQ  114 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~  114 (687)
                      ..+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++..
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA  165 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence            3567788888888888888888888888887777777778888888888888888888888777764 455556888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCChHHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK----TGAQLFLKCGQTARSI  190 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~la~~~~~~g~~~~A~  190 (687)
                      .|++++|...+++..+..|+++.++..++.++...|++++|.+.+.+..+....++....    ....-+...+..+++.
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~  245 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI  245 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            888888888888888888888888888888888888888888888888876544433221    1112223334444455


Q ss_pred             HHHHHHHHhCCCC--CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHH--HHHHHHHHHHcCCHHHHHHH
Q 005632          191 GILEEYLKVHPSD--ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL--KVKAGICYLRLGNMEKAEIL  266 (687)
Q Consensus       191 ~~~~~~~~~~p~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~  266 (687)
                      ..+..+....|..  ....++..++..+...|++++|...++++++..    |.+...  ...........++.+.++..
T Consensus       246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~~~~~~~l~~~~~l~~~~~~~~~~~  321 (409)
T TIGR00540       246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDRAISLPLCLPIPRLKPEDNEKLEKL  321 (409)
T ss_pred             HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence            5666666666632  112356677777777777777777777777762    222211  01112222223455555555


Q ss_pred             HHHHhhhCchhhH--HHHHHHHHHHHhcCChHHHHHHHHH--hhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632          267 FADLQWKNAIDHA--DLITEVADTLMSLGHSNSALKYYHF--LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD  342 (687)
Q Consensus       267 ~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  342 (687)
                      +++.+...|. ++  .....+|.+++..|++++|.++|++  +... .|+. ..+..+|.++...|+.++|.+++++++.
T Consensus       322 ~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       322 IEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555443 44  4555555555555555555555553  3222 2322 2233555555555555555555555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.88  E-value=3.3e-22  Score=193.37  Aligned_cols=257  Identities=22%  Similarity=0.327  Sum_probs=64.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           39 GEASLQYAYGNFEQAISLLKEVVRL--SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        39 ~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      ..|..++..|++++|++.+.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            4455555555555555555443332  245555555555555555555555555555555555555555555555 4555


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--PDNVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      ++++|+.+++++.+.. .++..+.....++...++++++...++++....  +.++..+..+|.++...|++++|+..++
T Consensus        92 ~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   92 DPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555555555433 234444445555555555555555555544433  3445555555555555555555555555


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 005632          195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN  274 (687)
Q Consensus       195 ~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  274 (687)
                      ++++.+|++..  +...++.++...|+++++...++.....    .+.+..++..+|.++...|++++|+.++++++...
T Consensus       171 ~al~~~P~~~~--~~~~l~~~li~~~~~~~~~~~l~~~~~~----~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  171 KALELDPDDPD--ARNALAWLLIDMGDYDEAREALKRLLKA----APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHH-TT-HH--HHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred             HHHHcCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHHH----CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence            55555555543  3445555555555555555555544444    22222333344444444444444444444444433


Q ss_pred             chhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632          275 AIDHADLITEVADTLMSLGHSNSALKYYHF  304 (687)
Q Consensus       275 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  304 (687)
                      |. ++..+..+|.++...|+.++|..++.+
T Consensus       245 p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  245 PD-DPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             TT--HHHHHHHHHHHT--------------
T ss_pred             cc-ccccccccccccccccccccccccccc
Confidence            32 444444444444444444444444433

>TIGR00540 hemY_coli hemY protein

Probab=99.88  E-value=1.6e-19  Score=183.58  Aligned_cols=302  Identities=14%  Similarity=0.078  Sum_probs=209.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Q 005632          107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-DATKTGAQLFLKCGQ  185 (687)
Q Consensus       107 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~g~  185 (687)
                      .-|.+....|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..++.++.+..|++. .+....+.++...|+
T Consensus        89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE  168 (409)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence            4455666677777777777777777776666666677777777777777777777777766664 455556777777777


Q ss_pred             hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHH
Q 005632          186 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI  265 (687)
Q Consensus       186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  265 (687)
                      +++|...++.+.+..|+++.  ++..++.++...|++++|...+.+..+....+.+....+......-....+..+++..
T Consensus       169 ~~~Al~~l~~l~~~~P~~~~--~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~  246 (409)
T TIGR00540       169 LHAARHGVDKLLEMAPRHKE--VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID  246 (409)
T ss_pred             HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            77777777777777777764  5667777777777777777777776655111111111111122222233344444455


Q ss_pred             HHHHHhhhCch---hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHH--HHHHHHHHHhhcHHHHHHHHHHH
Q 005632          266 LFADLQWKNAI---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLY--LKLAECYLSLKERAHAIMFFYKA  340 (687)
Q Consensus       266 ~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~a  340 (687)
                      .+..+....|.   +++..+..++..+...|++++|.+.++++++. .|++....  ..........++.+.+++.++++
T Consensus       247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~  325 (409)
T TIGR00540       247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ  325 (409)
T ss_pred             HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence            66666555553   37788888888888888888888888888876 56655321  22223334457788899999999


Q ss_pred             HHhcCCCH--HHHHHHHHHHHHcCCHHHHHHhcC--CCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHH
Q 005632          341 LDRFEDNI--DARLTLASLLLEEAKEEEAITLLS--PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDA  416 (687)
Q Consensus       341 l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  416 (687)
                      ++..|+++  .....+|+++.+.|++++|.++|+  .+.+..|+.             +.+..+|.++.+.|+.++|.++
T Consensus       326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-------------~~~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-------------NDLAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-------------HHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999  888889999999999999999999  566677754             3566899999999999999888


Q ss_pred             HHHHHHHh
Q 005632          417 IFPLVCES  424 (687)
Q Consensus       417 ~~~~~~~~  424 (687)
                      +++.+...
T Consensus       393 ~~~~l~~~  400 (409)
T TIGR00540       393 RQDSLGLM  400 (409)
T ss_pred             HHHHHHHH
Confidence            88776554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.7e-19  Score=165.04  Aligned_cols=312  Identities=13%  Similarity=0.046  Sum_probs=274.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632           40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA  119 (687)
Q Consensus        40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  119 (687)
                      .|.++.....+..+..++-+-....|++...+..+|.+++..|++++|+..|+++..++|......-..|.++...|+++
T Consensus       204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e  283 (564)
T KOG1174|consen  204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE  283 (564)
T ss_pred             HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence            34444444445555666666677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632          120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  199 (687)
                      .-.......+........-|+.-+..++..+++..|+.+-++++..+|.+..++...|.++...|+.++|+-.|+.+..+
T Consensus       284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML  363 (564)
T ss_pred             hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence            99999999998887778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHH-HHHH-HcCCHHHHHHHHHHHhhhCchh
Q 005632          200 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAG-ICYL-RLGNMEKAEILFADLQWKNAID  277 (687)
Q Consensus       200 ~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~~  277 (687)
                      .|...+  +|..+..+|...|++.+|...-..+...    -+.+...+..+| .++. .-.--++|...+++.+...|. 
T Consensus       364 ap~rL~--~Y~GL~hsYLA~~~~kEA~~~An~~~~~----~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-  436 (564)
T KOG1174|consen  364 APYRLE--IYRGLFHSYLAQKRFKEANALANWTIRL----FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-  436 (564)
T ss_pred             chhhHH--HHHHHHHHHHhhchHHHHHHHHHHHHHH----hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-
Confidence            998876  7999999999999999999999999988    555666666665 3333 334458899999999999885 


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632          278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL  357 (687)
Q Consensus       278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  357 (687)
                      ...+...++.++...|.+..++.++++.+..  ..+...+..+|.++...+.+.+|.++|..++.++|++..+...+-.+
T Consensus       437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l  514 (564)
T KOG1174|consen  437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL  514 (564)
T ss_pred             cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            8999999999999999999999999999965  55667899999999999999999999999999999998887776554


Q ss_pred             HHH
Q 005632          358 LLE  360 (687)
Q Consensus       358 ~~~  360 (687)
                      -..
T Consensus       515 EK~  517 (564)
T KOG1174|consen  515 EKS  517 (564)
T ss_pred             Hhc
Confidence            433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.87  E-value=3.3e-19  Score=181.56  Aligned_cols=599  Identities=15%  Similarity=0.045  Sum_probs=347.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHH
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQ  114 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~  114 (687)
                      +-..|..|...-+...|.++|.++.+++|.+..+....+..|....+++.|....-.+-+..|..  ...|..+|..|..
T Consensus       495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe  574 (1238)
T KOG1127|consen  495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE  574 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence            34568888877799999999999999999999999999999999999999999977777766643  3456778999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      .+++..|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.++..++|.+.-..+..+.+....|+|.+|+..+.
T Consensus       575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~  654 (1238)
T KOG1127|consen  575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALG  654 (1238)
T ss_pred             ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhCCCCC-----cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc----CCCc-----------------------
Q 005632          195 EYLKVHPSDA-----DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS----GKEL-----------------------  242 (687)
Q Consensus       195 ~~~~~~p~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~-----------------------  242 (687)
                      ..+.......     ....+...+..+...|-..+|..++++.++.+.-    ....                       
T Consensus       655 ~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~v  734 (1238)
T KOG1127|consen  655 LIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIV  734 (1238)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccch
Confidence            8876543221     1234555555566666666777777666553210    0000                       


Q ss_pred             ---------------------------------------hHHHHHHHHHHHHH--------cCCHHHHHHHHHHHhhhCc
Q 005632          243 ---------------------------------------PLKLKVKAGICYLR--------LGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       243 ---------------------------------------~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~  275 (687)
                                                             ....|+++|.-|++        +.+...|+.++.+++....
T Consensus       735 n~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a  814 (1238)
T KOG1127|consen  735 NMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA  814 (1238)
T ss_pred             HHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh
Confidence                                                   01223333333332        1111244444444444433


Q ss_pred             hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632          276 IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA  355 (687)
Q Consensus       276 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  355 (687)
                      . +...|..+|.+ ...|++.-|..+|-+.... .|.....|.++|.++....+++-|...|.++..++|.+...|...+
T Consensus       815 n-n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~A  891 (1238)
T KOG1127|consen  815 N-NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEA  891 (1238)
T ss_pred             c-cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHH
Confidence            2 44444444444 3334555555555444433 4555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhh
Q 005632          356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVK  435 (687)
Q Consensus       356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  435 (687)
                      .+....|+.-++...+............       ..+...+..--......|+.++.+.....+...++-......   
T Consensus       892 li~eavG~ii~~~~lfaHs~el~~~~gk-------a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~---  961 (1238)
T KOG1127|consen  892 LIPEAVGRIIERLILFAHSDELCSKEGK-------AKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL---  961 (1238)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHhhccccc-------cchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh---
Confidence            5555555555555555432222111111       001112233334445666666666655555433322211100   


Q ss_pred             hhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 005632          436 VKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAA--------RARKKIQKKEALKEEKKALAKAAGVEWHSD  507 (687)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (687)
                                        ..|+..  ..+....+..+.+...        |....++....+.+..-  .-......+-.
T Consensus       962 ------------------~~p~~~--fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv--ak~~~gRL~ls 1019 (1238)
T KOG1127|consen  962 ------------------GHPQLC--FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV--AKPDAGRLELS 1019 (1238)
T ss_pred             ------------------cCcchh--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhhhhhhh
Confidence                              000000  0000001111111111        11111111111000000  00000000000


Q ss_pred             CCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccC
Q 005632          508 DTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDST  587 (687)
Q Consensus       508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g  587 (687)
                      ....+.  +.     ...-....+..+........+.-.|++.++++.+++++.+..+.-   ....+....+.+-...|
T Consensus      1020 lgefe~--A~-----~a~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~---d~vvLl~kva~~~g~~~ 1089 (1238)
T KOG1127|consen 1020 LGEFES--AK-----KASWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSES---DKVVLLCKVAVCMGLAR 1089 (1238)
T ss_pred             hcchhh--Hh-----hhhcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhccccc---chhhhhHHHHHHHhhcc
Confidence            000010  00     000011122223334444445668999999999999998876631   01122222233333557


Q ss_pred             CCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCC----CCCccceeccccccccchHH
Q 005632          588 DPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKD----CVPPIIISGHQFTMASHHQD  663 (687)
Q Consensus       588 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~~g~~~~~~~~~~~  663 (687)
                      .-+.|...+-.++...|-.......+..++.-..+     ..-..-+..=+.+.|.    +.++-++.-.++..+|+-..
T Consensus      1090 ~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~d-----a~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~ 1164 (1238)
T KOG1127|consen 1090 QKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDAD-----AHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVA 1164 (1238)
T ss_pred             cchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhh-----hhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHH
Confidence            88889999999999988888888888888777766     1111111111222222    23333444455666777777


Q ss_pred             HHHHHHHHHhhCCCChhhhhhc
Q 005632          664 AARCYLEAYKLLPENPLINLKR  685 (687)
Q Consensus       664 A~~~~~~a~~~~P~~p~~~l~~  685 (687)
                      --...+|++.-+|+||-++-.|
T Consensus      1165 vk~~~qr~~h~~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1165 VKKQIQRAVHSNPGDPALWSLL 1186 (1238)
T ss_pred             HHHHHHHHHhcCCCChHHHHHH
Confidence            7788899999999999876443

>PRK12370 invasion protein regulator; Provisional

Probab=99.87  E-value=1.9e-19  Score=189.85  Aligned_cols=266  Identities=14%  Similarity=0.075  Sum_probs=177.5

Q ss_pred             hhHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc---------CChHHHHHHHHHHhccCC
Q 005632           32 PGVTKMLGEASLQYAY---GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---------GNHKSAFDFYVIAAHLSP   99 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p   99 (687)
                      .+...++.+|...+..   +++++|+..|+++++.+|+++.++..+|.++...         +++++|+..++++++++|
T Consensus       256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP  335 (553)
T PRK12370        256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH  335 (553)
T ss_pred             hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC
Confidence            3444455556544432   3456777777777777777777777777766533         236777777777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      +++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.....++.+
T Consensus       336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777776666566666


Q ss_pred             HHHcCChHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632          180 FLKCGQTARSIGILEEYLKVH-PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG  258 (687)
Q Consensus       180 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  258 (687)
                      ++..|++++|+..+++++... |+++.  .+..+|.++...|++++|...+.++...    .+........++..+...|
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~--~~~~la~~l~~~G~~~eA~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQHLQDNPI--LLSMQVMFLSLKGKHELARKLTKEISTQ----EITGLIAVNLLYAEYCQNS  489 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhccccCHH--HHHHHHHHHHhCCCHHHHHHHHHHhhhc----cchhHHHHHHHHHHHhccH
Confidence            666777777777777777664 44443  4667777777777777777777776555    5556666666666666666


Q ss_pred             CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005632          259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET  307 (687)
Q Consensus       259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  307 (687)
                        ++|...++.++..... .+........++.-.|+-+.+..+ +++.+
T Consensus       490 --~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~  534 (553)
T PRK12370        490 --ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKN  534 (553)
T ss_pred             --HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence              3666666665443322 222223366666666666666665 55443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=7.6e-19  Score=162.07  Aligned_cols=378  Identities=16%  Similarity=0.086  Sum_probs=311.5

Q ss_pred             CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc-----------
Q 005632           28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH-----------   96 (687)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------   96 (687)
                      ...+.+.......+.++...++-+.|+..+.++.... ..+..-..++..+-.-++-.++.-.+...+.           
T Consensus        91 ~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~  169 (564)
T KOG1174|consen   91 YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA  169 (564)
T ss_pred             CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence            3445577778888999999999999998876653321 1344555555555555544444433333322           


Q ss_pred             --------------------cCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005632           97 --------------------LSPKDSALWK---QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE  153 (687)
Q Consensus        97 --------------------~~p~~~~~~~---~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  153 (687)
                                          ..|..++.|.   .+|.++....-+..+..++-.-....|++...+..+|.++...|++.
T Consensus       170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~  249 (564)
T KOG1174|consen  170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF  249 (564)
T ss_pred             HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence                                2344444433   23444444445555666666677788999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632          154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ  233 (687)
Q Consensus       154 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  233 (687)
                      +|+..|+++.-++|.+....-..|.++...|++++-......++........  -|+.-+...+..+++..|+.+-++++
T Consensus       250 ~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~--~wfV~~~~l~~~K~~~rAL~~~eK~I  327 (564)
T KOG1174|consen  250 QAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS--HWFVHAQLLYDEKKFERALNFVEKCI  327 (564)
T ss_pred             HHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh--hhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998888755443  47788889999999999999999999


Q ss_pred             HHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCc
Q 005632          234 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN  313 (687)
Q Consensus       234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~  313 (687)
                      +.    ++.+...+...|.++...|+.++|+-.|+.+....|. ..+.|..+...|...|.+.+|.-.-+.+... .|.+
T Consensus       328 ~~----~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~s  401 (564)
T KOG1174|consen  328 DS----EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNS  401 (564)
T ss_pred             cc----CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcc
Confidence            99    8999999999999999999999999999999988875 8999999999999999999999999998876 7888


Q ss_pred             HHHHHHHH-HHHH-HhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhh
Q 005632          314 GYLYLKLA-ECYL-SLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWW  391 (687)
Q Consensus       314 ~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  391 (687)
                      +.++..+| .++. .-.--++|.+++++++.+.|....+-..++.++...|+++.++.++++.+...|++.         
T Consensus       402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~---------  472 (564)
T KOG1174|consen  402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN---------  472 (564)
T ss_pred             hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH---------
Confidence            88888886 4443 334468999999999999999999999999999999999999999999999998774         


Q ss_pred             hhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Q 005632          392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCV  427 (687)
Q Consensus       392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  427 (687)
                          .+..||.++...+.+.+|.+.|...++.-+..
T Consensus       473 ----LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  473 ----LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             ----HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence                89999999999999999999999998776553

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=9.7e-20  Score=162.79  Aligned_cols=337  Identities=15%  Similarity=0.117  Sum_probs=277.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--------CChHHHHHHHHHH-hcc--CCCCH----
Q 005632           38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL--------GNHKSAFDFYVIA-AHL--SPKDS----  102 (687)
Q Consensus        38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~a-l~~--~p~~~----  102 (687)
                      +-+|..+++...|+...+++..+++..|++-.+|.....++...        .+-.+|...++.- +..  .|...    
T Consensus         8 ~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k~p   87 (478)
T KOG1129|consen    8 YFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIKTP   87 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCcccCC
Confidence            45688999999999999999999999999999999888887653        2333555555421 111  01100    


Q ss_pred             --------------------------------------------------------------------------------
Q 005632          103 --------------------------------------------------------------------------------  102 (687)
Q Consensus       103 --------------------------------------------------------------------------------  102 (687)
                                                                                                      
T Consensus        88 ~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~nls  167 (478)
T KOG1129|consen   88 FTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYNLS  167 (478)
T ss_pred             CCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceeehh
Confidence                                                                                            


Q ss_pred             ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632          103 ------------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE---PK-------DISLRIHLASFYVEIGDYEKAAESYE  160 (687)
Q Consensus       103 ------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~  160 (687)
                                  -.....-.++...++...|-......++..   |.       +......+|.||..+|.+.+|...++
T Consensus       168 RLN~tkYa~~p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Aekqlq  247 (478)
T KOG1129|consen  168 RLNPTKYAERPTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQ  247 (478)
T ss_pred             hcCchhhccChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHH
Confidence                        000011123444555555554444443321   11       12234569999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC
Q 005632          161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK  240 (687)
Q Consensus       161 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  240 (687)
                      ..++..| .++.+..|+.+|.+..++..|+..+...++..|.+..  .+...+.++...+++++|.++|+.+++.    +
T Consensus       248 ssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT--~l~g~ARi~eam~~~~~a~~lYk~vlk~----~  320 (478)
T KOG1129|consen  248 SSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT--YLLGQARIHEAMEQQEDALQLYKLVLKL----H  320 (478)
T ss_pred             HHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh--hhhhhHHHHHHHHhHHHHHHHHHHHHhc----C
Confidence            9999876 6788999999999999999999999999999999886  5778999999999999999999999999    8


Q ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC--CCcHHHHH
Q 005632          241 ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG--TDNGYLYL  318 (687)
Q Consensus       241 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~  318 (687)
                      +.+.++...+|.-|+..++++-|+.+|++++..... +++.+.++|.+++..++++-++..|++++....  ....++|+
T Consensus       321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWY  399 (478)
T KOG1129|consen  321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWY  399 (478)
T ss_pred             CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhh
Confidence            889998888999999999999999999999998775 999999999999999999999999999987632  34678999


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632          319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM  382 (687)
Q Consensus       319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  382 (687)
                      ++|.+....|++.-|..+|+-++..+|++.+++.+|+.+-.+.|+.++|..+++.+.+..|.-.
T Consensus       400 Nlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~  463 (478)
T KOG1129|consen  400 NLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA  463 (478)
T ss_pred             ccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999888654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.3e-16  Score=146.61  Aligned_cols=456  Identities=15%  Similarity=0.107  Sum_probs=256.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      ..++.-|.--..++++..|..+|++++..+..+...|...+.+-++......|...+++++.+-|.-...|+....+-..
T Consensus        74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~  153 (677)
T KOG1915|consen   74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM  153 (677)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            33444455555555566666666666665555555666666666666666666666666666656555555555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      +|+...|.+.|++-++..| +..+|......-...+..+.|...|++.+-..| ....|...+..-.+.|+..-|..+|+
T Consensus       154 LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~aR~Vye  231 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVALARSVYE  231 (677)
T ss_pred             hcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            6666666666666665555 334455555555555556666666666555554 34455555555556666666666666


Q ss_pred             HHHHhCCCCCcH-HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCH---HHHH-----H
Q 005632          195 EYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM---EKAE-----I  265 (687)
Q Consensus       195 ~~~~~~p~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~-----~  265 (687)
                      ++++...++... ..+...+..-..++.++.|...|+-++...|.+  ....++-.....--+-|+.   ++++     -
T Consensus       232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~--raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~  309 (677)
T KOG1915|consen  232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG--RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF  309 (677)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence            665554433221 123334444455555555655555555553211  1122222222222233332   1221     1


Q ss_pred             HHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcH--------HHHHHHHH-HHHHhhcHHHHHHH
Q 005632          266 LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG--------YLYLKLAE-CYLSLKERAHAIMF  336 (687)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~~la~-~~~~~g~~~~A~~~  336 (687)
                      .|+..+..+|. +.+.|+....+....|+.+.-.+.|++++...+|...        .+|.+.+. .-....+.+.+.+.
T Consensus       310 qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v  388 (677)
T KOG1915|consen  310 QYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV  388 (677)
T ss_pred             HHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            23334444443 5555666666666666666666666666655333211        11122111 11134455666666


Q ss_pred             HHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchH
Q 005632          337 FYKALDRFEDN----IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPED  412 (687)
Q Consensus       337 ~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  412 (687)
                      |+.++++-|..    ..+|+..+....++.+...|.+.+-.++-..|.+.             ++-....+-.++++++.
T Consensus       389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-------------lFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-------------LFKGYIELELQLREFDR  455 (677)
T ss_pred             HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-------------HHHHHHHHHHHHhhHHH
Confidence            66666665533    45555566666666666666666666666665442             44444444455555555


Q ss_pred             HHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 005632          413 FVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEE  492 (687)
Q Consensus       413 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (687)
                      ....|++.+.                                                                      
T Consensus       456 cRkLYEkfle----------------------------------------------------------------------  465 (677)
T KOG1915|consen  456 CRKLYEKFLE----------------------------------------------------------------------  465 (677)
T ss_pred             HHHHHHHHHh----------------------------------------------------------------------
Confidence            5555544443                                                                      


Q ss_pred             HHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhH
Q 005632          493 KKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKK  572 (687)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~  572 (687)
                                                         -.|+++......+.+...+|+.+.|..+++-|+....    .+..
T Consensus       466 -----------------------------------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmp  506 (677)
T KOG1915|consen  466 -----------------------------------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMP  506 (677)
T ss_pred             -----------------------------------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccH
Confidence                                               3566677778889999999999999999999875322    2333


Q ss_pred             HHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHH
Q 005632          573 EELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLS  618 (687)
Q Consensus       573 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  618 (687)
                      ..++-.....-...|.++.|..+++.+|...+... .|.-++..-.
T Consensus       507 ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~  551 (677)
T KOG1915|consen  507 ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA  551 (677)
T ss_pred             HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence            44444555556677999999999999999988776 8888887765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=2.8e-20  Score=166.20  Aligned_cols=274  Identities=16%  Similarity=0.128  Sum_probs=244.5

Q ss_pred             HHHHHcCChHHHHHHHHHHhccC---C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632           76 LAHSALGNHKSAFDFYVIAAHLS---P-------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus        76 ~~~~~~g~~~~A~~~~~~al~~~---p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      .+++..+|...|-......++.+   |       .+.+....+|.||.+.|-+.+|...++.+++..| .++.+..++.+
T Consensus       187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv  265 (478)
T KOG1129|consen  187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV  265 (478)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence            45667788888887666655442   1       1223335789999999999999999999999876 67889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632          146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT  225 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A  225 (687)
                      |....++..|+..|.+.++..|.+...+...++++..+++.++|.++|+.+++.+|.+.+  +.-.+|.-|+..++++-|
T Consensus       266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE--aiAcia~~yfY~~~PE~A  343 (478)
T KOG1129|consen  266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE--AIACIAVGYFYDNNPEMA  343 (478)
T ss_pred             HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce--eeeeeeeccccCCChHHH
Confidence            999999999999999999999999999999999999999999999999999999999987  556788889999999999


Q ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--CchhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632          226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK--NAIDHADLITEVADTLMSLGHSNSALKYYH  303 (687)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  303 (687)
                      +.+|++.++.    ...+++++.++|.|.+..++++-++..|++++..  .|....++|+++|.+....|++.-|..+|+
T Consensus       344 lryYRRiLqm----G~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr  419 (478)
T KOG1129|consen  344 LRYYRRILQM----GAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR  419 (478)
T ss_pred             HHHHHHHHHh----cCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence            9999999999    7888999999999999999999999999998764  355678999999999999999999999999


Q ss_pred             HhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632          304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL  357 (687)
Q Consensus       304 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  357 (687)
                      -++.. ++++..++.++|.+-.+.|+.++|..++..+-...|+-.+..++++.+
T Consensus       420 laL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  420 LALTS-DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             HHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence            99976 899999999999999999999999999999999999888877776644

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.86  E-value=1.4e-18  Score=175.56  Aligned_cols=299  Identities=16%  Similarity=0.132  Sum_probs=206.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-LTFAVQKGDTAQAMYYIRQAIRAEPKDISL-RIHLASFYVE  148 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~la~~~~~  148 (687)
                      .+..|......|++++|.+.+.+.-...+. +..++.+ +......|+++.|..++.++.+.+|++..+ ....+.++..
T Consensus        87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~  165 (398)
T PRK10747         87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA  165 (398)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            455566666677777777666665544332 3333333 555577777777777777777777766433 3344777777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH---HHcchHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL---MENNAYEKT  225 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~---~~~~~~~~A  225 (687)
                      .|+++.|+..++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.++.. .-......+   .........
T Consensus       166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~~l~~~~~~~~~  244 (398)
T PRK10747        166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQQAWIGLMDQAMADQG  244 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence            7888888888888887788887777777888888888888887777777665553321 110000111   111111122


Q ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 005632          226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL  305 (687)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  305 (687)
                      ...+.+..+..+...+..+.+...++..+...|+.++|...+++.+...+  ++......+.+  ..++++++++.+++.
T Consensus       245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~~l~~~l--~~~~~~~al~~~e~~  320 (398)
T PRK10747        245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERLVLLIPRL--KTNNPEQLEKVLRQQ  320 (398)
T ss_pred             HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHHHHHhhc--cCCChHHHHHHHHHH
Confidence            33344444433333566778888899999999999999999998887433  44444444433  448899999999988


Q ss_pred             hhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcC
Q 005632          306 ETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL  377 (687)
Q Consensus       306 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  377 (687)
                      .+. +|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++...|+.++|..++++++..
T Consensus       321 lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        321 IKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             Hhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            877 8999999999999999999999999999999999987644 557899999999999999999887654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.86  E-value=4.5e-18  Score=171.87  Aligned_cols=297  Identities=14%  Similarity=0.094  Sum_probs=237.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHH-HHHHHHcCChHHHHHHHHHHhccCCCCHHHH-HHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTL-GLAHSALGNHKSAFDFYVIAAHLSPKDSALW-KQLLTFA  112 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~  112 (687)
                      ...+..|...+..|+|++|.+.+.+.-+..+ .+..++.+ +.+....|+++.|..++.++.+.+|++.... ...+.++
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~  163 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ  163 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            3467889999999999999988887655433 35555555 6666999999999999999999999876443 4459999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcC
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK--------TGAQLFLKCG  184 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------~la~~~~~~g  184 (687)
                      ...|++++|+..++++.+.+|+++.++..++.+|...|++++|++.+.++.+..+.++....        .+........
T Consensus       164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~  243 (398)
T PRK10747        164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ  243 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999988776544222        2222222233


Q ss_pred             ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH
Q 005632          185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE  264 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  264 (687)
                      +.+.....++..-+..|+++.  +...++..+...|+.++|...++++++.    .+.. .+....+.  ...+++++++
T Consensus       244 ~~~~l~~~w~~lp~~~~~~~~--~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~-~l~~l~~~--l~~~~~~~al  314 (398)
T PRK10747        244 GSEGLKRWWKNQSRKTRHQVA--LQVAMAEHLIECDDHDTAQQIILDGLKR----QYDE-RLVLLIPR--LKTNNPEQLE  314 (398)
T ss_pred             CHHHHHHHHHhCCHHHhCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCH-HHHHHHhh--ccCCChHHHH
Confidence            334444444444444555654  7889999999999999999999999885    3322 22222332  3459999999


Q ss_pred             HHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc
Q 005632          265 ILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF  344 (687)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  344 (687)
                      ..+++.++..|. ++..+..+|.++...|++++|.+.|++++.. .|++ ..+..++.++..+|+.++|..+|++++.+.
T Consensus       315 ~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        315 KVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999999885 9999999999999999999999999999977 5654 456689999999999999999999998764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.85  E-value=7.1e-19  Score=169.90  Aligned_cols=238  Identities=13%  Similarity=0.047  Sum_probs=167.3

Q ss_pred             cCCHHHHHHHHHHHHHhCC---C-chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           47 YGNFEQAISLLKEVVRLSP---N-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM  122 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  122 (687)
                      .+..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3566788888888886433   2 36678888999888999999999999999989988888999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632          123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS  202 (687)
Q Consensus       123 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  202 (687)
                      ..|+++++++|++..++..+|.++...|++++|++.|+++++.+|+++... ....+....+++++|+..+.+.....+.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence            999999998998888888899988888999999999999998888887422 2223345567888888888776654332


Q ss_pred             CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc---cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH
Q 005632          203 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA  279 (687)
Q Consensus       203 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  279 (687)
                      ..    | ..+.+....|+..++ ..++.+.....   ...+....+++.+|.++...|++++|+.+|++++..+|++..
T Consensus       198 ~~----~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~  271 (296)
T PRK11189        198 EQ----W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV  271 (296)
T ss_pred             cc----c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence            22    1 124444455555433 23333332110   003344566777777777777777777777777776665555


Q ss_pred             HHHHHHHHHHHh
Q 005632          280 DLITEVADTLMS  291 (687)
Q Consensus       280 ~~~~~la~~~~~  291 (687)
                      +..+.+..+...
T Consensus       272 e~~~~~~e~~~~  283 (296)
T PRK11189        272 EHRYALLELALL  283 (296)
T ss_pred             HHHHHHHHHHHH
Confidence            555555444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.85  E-value=3.3e-17  Score=160.31  Aligned_cols=489  Identities=14%  Similarity=0.075  Sum_probs=310.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..++..+.-.+..++|...++..+.+++..|.+++.+...|..+...|+.++|..+...++..++.+...|..+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            34555555566777888888888888888888888888888888888888888888888888777777788888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQH  228 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~  228 (687)
                      ..+|++|+.+|+.++.+.|+|..++..++.+..++++++.....-.+.++..|....  .|...+..+...|++..|...
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra--~w~~~Avs~~L~g~y~~A~~i  165 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA--SWIGFAVAQHLLGEYKMALEI  165 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888777777777777777654  566777777777887777777


Q ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      ++...+... ..+....                              -...........+..+.|.+++|++.+......
T Consensus       166 l~ef~~t~~-~~~s~~~------------------------------~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~  214 (700)
T KOG1156|consen  166 LEEFEKTQN-TSPSKED------------------------------YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ  214 (700)
T ss_pred             HHHHHHhhc-cCCCHHH------------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH
Confidence            776665511 0011000                              123445555666777788888888887655433


Q ss_pred             cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH-HhcCCCCcCCcccCCCCCC
Q 005632          309 AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI-TLLSPPKDLDSLDMNSDKS  387 (687)
Q Consensus       309 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~  387 (687)
                       .-+........|.++..++++++|...|...+..+|++...+..+-.++..-.+.-++. ..|....+..|...     
T Consensus       215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-----  288 (700)
T KOG1156|consen  215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-----  288 (700)
T ss_pred             -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-----
Confidence             33445556678889999999999999999999999999888888777776333444444 55665555555443     


Q ss_pred             ChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCC
Q 005632          388 NPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPA  467 (687)
Q Consensus       388 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (687)
                              ....++.-.. .|  ++-...+...++..+..      +                      -+++|..+.+.
T Consensus       289 --------~p~Rlplsvl-~~--eel~~~vdkyL~~~l~K------g----------------------~p~vf~dl~SL  329 (700)
T KOG1156|consen  289 --------CPRRLPLSVL-NG--EELKEIVDKYLRPLLSK------G----------------------VPSVFKDLRSL  329 (700)
T ss_pred             --------cchhccHHHh-Cc--chhHHHHHHHHHHHhhc------C----------------------CCchhhhhHHH
Confidence                    2222222221 22  23323333333222111      0                      00001000000


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCCCCCCchhhhhhccCCCCCcccCcchh-hHHHHHHHHH
Q 005632          468 APKSELLVAARARKKIQKKEALKEEKKALAKAAGVE----WHSDDTDDESQQEAFREPPLPNLLKNEEN-QCLIIDLCKA  542 (687)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~  542 (687)
                         ...-+...   -+++-        .......++    .+..+...               ...|-. .-...-++.-
T Consensus       330 ---yk~p~k~~---~le~L--------vt~y~~~L~~~~~f~~~D~~~---------------~E~PttllWt~y~laqh  380 (700)
T KOG1156|consen  330 ---YKDPEKVA---FLEKL--------VTSYQHSLSGTGMFNFLDDGK---------------QEPPTTLLWTLYFLAQH  380 (700)
T ss_pred             ---HhchhHhH---HHHHH--------HHHHHhhcccccCCCcccccc---------------cCCchHHHHHHHHHHHH
Confidence               00000000   00000        000000111    11110000               011111 1133467888


Q ss_pred             HHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 005632          543 LASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGK  622 (687)
Q Consensus       543 ~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  622 (687)
                      +...|+++.|..+++.|+.-.|.      ..++..+.++++.+.|+.++|..++..+-+.+-.|..+-.-.+....+...
T Consensus       381 ~D~~g~~~~A~~yId~AIdHTPT------liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~  454 (700)
T KOG1156|consen  381 YDKLGDYEVALEYIDLAIDHTPT------LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE  454 (700)
T ss_pred             HHHcccHHHHHHHHHHHhccCch------HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence            99999999999999999876665      567888889999999999999999999998887776665567777778777


Q ss_pred             CcccccchHHHHHHHHhhCCC---------CCCccceeccccccccchHHHHHHHHHHHhh
Q 005632          623 INSKHSKHSKFIRYLRAKYKD---------CVPPIIISGHQFTMASHHQDAARCYLEAYKL  674 (687)
Q Consensus       623 ~~~~~~~a~~~~~~~~~~~p~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  674 (687)
                          ..+|...+.......-+         |+-..+-.|..+..+|++-.|+.-|..+.++
T Consensus       455 ----i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~  511 (700)
T KOG1156|consen  455 ----IEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH  511 (700)
T ss_pred             ----cHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence                55666555444433211         1112345788888888998888887766543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.84  E-value=1.9e-18  Score=147.87  Aligned_cols=204  Identities=19%  Similarity=0.136  Sum_probs=183.3

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      ......+.+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++++.|..
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632          112 AVQKGDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A  189 (687)
                      ++.+|++++|...|++++..  .|..+.++.++|.|..+.|+++.|.++|+++++.+|+.+.....++..++..|++..|
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            99999999999999999973  4556788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc
Q 005632          190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF  237 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  237 (687)
                      ..++++.....+-..  ..+.....+....|+-+.+-++=.+....+|
T Consensus       193 r~~~~~~~~~~~~~A--~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP  238 (250)
T COG3063         193 RLYLERYQQRGGAQA--ESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP  238 (250)
T ss_pred             HHHHHHHHhcccccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            999999888777443  3666777888888999888888777777743

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.4e-16  Score=150.90  Aligned_cols=472  Identities=13%  Similarity=0.122  Sum_probs=314.9

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      ....++..-..+...|+|++|.+...+++...|+++.++...-.+..+.++|++|+...++-...... ....+..+.|.
T Consensus        11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~   89 (652)
T KOG2376|consen   11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCE   89 (652)
T ss_pred             cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHH
Confidence            34678888889999999999999999999999999999999999999999999999655543322211 22237889999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      ++.+..++|+..++   ..++.+..+....|.+++++|+|++|+..|+...+.+.++.+.......+-....  -.+ . 
T Consensus        90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-  162 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-  162 (652)
T ss_pred             HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-
Confidence            99999999999999   4566777788999999999999999999999999887776655443332221110  001 1 


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHh----ccCCCc-------hHHHHHHHHHHHHHcCCHH
Q 005632          193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR----FSGKEL-------PLKLKVKAGICYLRLGNME  261 (687)
Q Consensus       193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~-------~~~~~~~l~~~~~~~~~~~  261 (687)
                      ..+.....|++ ....+++.+.++...|+|.+|++.+++++.+.    ..++..       -..+...++.++..+|+..
T Consensus       163 ~~q~v~~v~e~-syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  163 LLQSVPEVPED-SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHHhccCCCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence            23333344433 23578999999999999999999999995542    111111       1245678899999999999


Q ss_pred             HHHHHHHHHhhhCchhhHHHH---HHHHHHHHhcCChH-HHHHHHHHhhhc---------cCCCcHHHHHHHHHHHHHhh
Q 005632          262 KAEILFADLQWKNAIDHADLI---TEVADTLMSLGHSN-SALKYYHFLETN---------AGTDNGYLYLKLAECYLSLK  328 (687)
Q Consensus       262 ~A~~~~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~-~A~~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g  328 (687)
                      +|...|..++..++.+.+...   +++..+-....-++ .++..++.....         .......++.+.+.+.+..+
T Consensus       242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn  321 (652)
T KOG2376|consen  242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN  321 (652)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999988876443222   22221111111111 122222211110         11223345566666666666


Q ss_pred             cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcC
Q 005632          329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKG  408 (687)
Q Consensus       329 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  408 (687)
                      .-+.+.+.....-...|...--.........+...+.+|.+++....+.+|...-           .+...++.+...+|
T Consensus       322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~-----------~v~L~~aQl~is~g  390 (652)
T KOG2376|consen  322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK-----------VVLLLRAQLKISQG  390 (652)
T ss_pred             hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH-----------HHHHHHHHHHHhcC
Confidence            6666666655554445544322233333333444788999999998888887632           58899999999999


Q ss_pred             CchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHH
Q 005632          409 MPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEA  488 (687)
Q Consensus       409 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (687)
                      +++.|++.+..........                       ++.                                   
T Consensus       391 n~~~A~~il~~~~~~~~ss-----------------------~~~-----------------------------------  412 (652)
T KOG2376|consen  391 NPEVALEILSLFLESWKSS-----------------------ILE-----------------------------------  412 (652)
T ss_pred             CHHHHHHHHHHHhhhhhhh-----------------------hhh-----------------------------------
Confidence            9999999888665211000                       000                                   


Q ss_pred             HHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCc
Q 005632          489 LKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILP  568 (687)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~  568 (687)
                                                           +...|   .+...+..++...+..+-|..++..++.--....+
T Consensus       413 -------------------------------------~~~~P---~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t  452 (652)
T KOG2376|consen  413 -------------------------------------AKHLP---GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT  452 (652)
T ss_pred             -------------------------------------hccCh---hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence                                                 00111   12223333455556666666777666643333222


Q ss_pred             -hhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 005632          569 -LEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGK  622 (687)
Q Consensus       569 -~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  622 (687)
                       ......++...+..-+..|+.++|...++++++.+|++..+...+...+.+...
T Consensus       453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~  507 (652)
T KOG2376|consen  453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDP  507 (652)
T ss_pred             cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH
Confidence             222234444555666667999999999999999999999999999888888776

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=3.9e-19  Score=171.92  Aligned_cols=256  Identities=18%  Similarity=0.235  Sum_probs=205.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      -|..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||.+|...|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChH
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIH-------LASFYVEIGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLKCGQTA  187 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~  187 (687)
                      .-.+|+.++.+-+...|........       ..........+..-.+.|..+....|  .++++...||.+|...|+|+
T Consensus       368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            9999999999998877654321110       00011112224455667777777777  68899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHH
Q 005632          188 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF  267 (687)
Q Consensus       188 ~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  267 (687)
                      +|+.+|+.++...|++..  .|+.||..+....+.++|+..|.+++++    .|..+.+++++|..++.+|.|.+|..+|
T Consensus       448 raiDcf~~AL~v~Pnd~~--lWNRLGAtLAN~~~s~EAIsAY~rALqL----qP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  448 RAVDCFEAALQVKPNDYL--LWNRLGATLANGNRSEEAISAYNRALQL----QPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHHhcCCchHH--HHHHhhHHhcCCcccHHHHHHHHHHHhc----CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            999999999999999875  7999999999999999999999999999    8888899999999999999999999999


Q ss_pred             HHHhhhCch-----h----hHHHHHHHHHHHHhcCChHHH
Q 005632          268 ADLQWKNAI-----D----HADLITEVADTLMSLGHSNSA  298 (687)
Q Consensus       268 ~~~~~~~~~-----~----~~~~~~~la~~~~~~g~~~~A  298 (687)
                      -.++...+.     +    +..+|..|=.++...++.+-+
T Consensus       522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            888764432     0    123455554555555554433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.82  E-value=4.3e-18  Score=164.47  Aligned_cols=240  Identities=16%  Similarity=0.105  Sum_probs=167.6

Q ss_pred             cCChHHHHHHHHHHhccC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           81 LGNHKSAFDFYVIAAHLS---PK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA  156 (687)
Q Consensus        81 ~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  156 (687)
                      .+..+.++..+.+++...   |. .+..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456778888888888643   33 36779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632          157 ESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR  236 (687)
Q Consensus       157 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  236 (687)
                      ..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++..   .....+....+++++|+..+.+.....
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~---~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR---ALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999988631   112233455678999999997766441


Q ss_pred             ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHH
Q 005632          237 FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL  316 (687)
Q Consensus       237 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  316 (687)
                          +...  +. .+.+....|+...+ ..++.+......                            .... .|..+.+
T Consensus       196 ----~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~----------------------------~~~l-~~~~~ea  238 (296)
T PRK11189        196 ----DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATD----------------------------NTEL-AERLCET  238 (296)
T ss_pred             ----Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCC----------------------------cHHH-HHHHHHH
Confidence                1111  11 34444555655443 233333211110                            0011 2334455


Q ss_pred             HHHHHHHHHHhhcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 005632          317 YLKLAECYLSLKERAHAIMFFYKALDRFE-DNIDARLTLASLLLE  360 (687)
Q Consensus       317 ~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~  360 (687)
                      |+.+|.++...|++++|+.+|+++++.+| +.++..+.+..+...
T Consensus       239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        239 YFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            66666666666666666666666666654 444554444444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.82  E-value=8e-18  Score=159.46  Aligned_cols=203  Identities=21%  Similarity=0.203  Sum_probs=178.7

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      +.....++..|..++..|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.+...+..+|.
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  107 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT  107 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            44567788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAE--PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                      ++...|++++|+..+++++...  |.....+..+|.++...|++++|...+.+++...|+++.++..+|.++...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999998753  45567888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      |...+++++...|.+..  .+..++.++...|+.++|..+.+.+...
T Consensus       188 A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAE--SLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhCCCCHH--HHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99999999888766554  5667888888899999998887776544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.82  E-value=1.4e-17  Score=142.66  Aligned_cols=209  Identities=21%  Similarity=0.218  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 005632          137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL  216 (687)
Q Consensus       137 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~  216 (687)
                      .+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+  ++++.|..+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd--VLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD--VLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--hhhhhhHHH
Confidence            467778888888888888888888888888888888888888888888888888888888888888887  788888888


Q ss_pred             HHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChH
Q 005632          217 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSN  296 (687)
Q Consensus       217 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  296 (687)
                      +.+|++++|...|++++..  +..+.....+.++|.|..+.|+++.|..+|++++..+|. .+.....++..++..|+|.
T Consensus       114 C~qg~~~eA~q~F~~Al~~--P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         114 CAQGRPEEAMQQFERALAD--PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA  190 (250)
T ss_pred             HhCCChHHHHHHHHHHHhC--CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence            8888888888888888764  334556677888888888888888888888888888874 8888888888888899999


Q ss_pred             HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH
Q 005632          297 SALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR  351 (687)
Q Consensus       297 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  351 (687)
                      .|..+++..... .+.....+.....+-...|+-+.+-.+=.+.....|...+..
T Consensus       191 ~Ar~~~~~~~~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q  244 (250)
T COG3063         191 PARLYLERYQQR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ  244 (250)
T ss_pred             HHHHHHHHHHhc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            998888887766 446666776777788888888888888888888888876544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=4.6e-18  Score=157.26  Aligned_cols=285  Identities=17%  Similarity=0.150  Sum_probs=202.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+.....+|..++...+|.+|+..+..+++..|+++..|...+.+++..|++++|.-..++.++++|..+..+...+.|+
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH  127 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence            56667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHH---------------HhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAI---------------RAE---PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK  174 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~---------------~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  174 (687)
                      ...++..+|...++..-               ..+   |....+....+.++...|++++|...--..+++++.+.++++
T Consensus       128 ~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~  207 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY  207 (486)
T ss_pred             hhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH
Confidence            99998888876665221               000   222345566778888888888888888888888888888888


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 005632          175 TGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICY  254 (687)
Q Consensus       175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  254 (687)
                      ..|.++...++.+.|+..|++++.++|+.......+.                            .+.....+-..|.-.
T Consensus       208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~----------------------------~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM----------------------------MPKKLEVKKERGNDA  259 (486)
T ss_pred             hcccccccccchHHHHHHHhhhhccChhhhhHHhHhh----------------------------hHHHHHHHHhhhhhH
Confidence            8888888888888888888888888887654211000                            011112233344444


Q ss_pred             HHcCCHHHHHHHHHHHhhhCch---hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHH
Q 005632          255 LRLGNMEKAEILFADLQWKNAI---DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERA  331 (687)
Q Consensus       255 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  331 (687)
                      ++.|++..|.+.|..++..+|.   .+...|.+.+.+....|+..+|+...+.++.+ ++....++...|.|+..+++|+
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555554442   13444555555666666666666666666555 5555556666666666666666


Q ss_pred             HHHHHHHHHHHhcCC
Q 005632          332 HAIMFFYKALDRFED  346 (687)
Q Consensus       332 ~A~~~~~~al~~~p~  346 (687)
                      +|++.|+++++...+
T Consensus       339 ~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  339 EAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHhhccc
Confidence            666666666655443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=1e-17  Score=162.22  Aligned_cols=259  Identities=14%  Similarity=0.120  Sum_probs=216.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632          106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ  185 (687)
Q Consensus       106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  185 (687)
                      +..|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCcHHHHHHHH---------HHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632          186 TARSIGILEEYLKVHPSDADLSVIDLLV---------AILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR  256 (687)
Q Consensus       186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la---------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (687)
                      -.+|...+...+...|....    ...+         .-......+..-.+.|-.+....+  ...++.+...||.+|..
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~----l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~--~~~DpdvQ~~LGVLy~l  442 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVH----LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP--TKIDPDVQSGLGVLYNL  442 (579)
T ss_pred             HHHHHHHHHHHHHhCccchh----ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC--CCCChhHHhhhHHHHhc
Confidence            99999999999988765431    1110         001111223344455555555522  23788899999999999


Q ss_pred             cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 005632          257 LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMF  336 (687)
Q Consensus       257 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  336 (687)
                      .|+|++|+.+|+.++...|. +...|..+|-.+....+.++|+..|++++++ .|....+++++|.++..+|.|.+|.++
T Consensus       443 s~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~yVR~RyNlgIS~mNlG~ykEA~~h  520 (579)
T KOG1125|consen  443 SGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL-QPGYVRVRYNLGISCMNLGAYKEAVKH  520 (579)
T ss_pred             chHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence            99999999999999999885 9999999999999999999999999999998 899999999999999999999999999


Q ss_pred             HHHHHHhcCCC----------HHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632          337 FYKALDRFEDN----------IDARLTLASLLLEEAKEEEAITLLS  372 (687)
Q Consensus       337 ~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~  372 (687)
                      |-.+|.+.+..          ..+|..|-.++...++.+-+.....
T Consensus       521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~  566 (579)
T KOG1125|consen  521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP  566 (579)
T ss_pred             HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence            99999886641          2477777777777888776655543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=3.3e-17  Score=155.24  Aligned_cols=199  Identities=19%  Similarity=0.194  Sum_probs=150.0

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      .+..++.+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            35677788888888888888888888888888888888888888888888888888888888888888777888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632          147 VEIGDYEKAAESYEQIQKLF--PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK  224 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~  224 (687)
                      ...|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++...|.+..  ++..++.++...|++++
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE--SLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH--HHHHHHHHHHHcCCHHH
Confidence            88888888888888877643  344566777777788888888888888887777777654  56677777777788877


Q ss_pred             HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       225 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      |...+++++..    .+.....+..++.++...|+.++|..+.+.+.
T Consensus       188 A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       188 ARAYLERYQQT----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            77777777776    34445555566677777777777776666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=8.9e-18  Score=155.41  Aligned_cols=284  Identities=18%  Similarity=0.135  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      -....|..++...+|.+|+..+..|++..|++...|...+.+++..|++++|....++.+++.|..+......+.++...
T Consensus        51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~  130 (486)
T KOG0550|consen   51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL  130 (486)
T ss_pred             HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence            34556667777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcchHHHHHHH
Q 005632          150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQH  228 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~la~~~~~~~~~~~A~~~  228 (687)
                      ++..+|.+.++        +..++           ....|+..+++.+..+...+. ..+-..-+.++...|++++|...
T Consensus       131 ~~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e  191 (486)
T KOG0550|consen  131 SDLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE  191 (486)
T ss_pred             HHHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence            87777777666        11111           111222223332222211111 11233456666777777777777


Q ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh-----------hHHHHHHHHHHHHhcCChHH
Q 005632          229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID-----------HADLITEVADTLMSLGHSNS  297 (687)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~  297 (687)
                      --..+++    ++.+..+++..|.++...++.+.|+..|++.+..+|..           ....+..-|.-.++.|++..
T Consensus       192 a~~ilkl----d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~  267 (486)
T KOG0550|consen  192 AIDILKL----DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK  267 (486)
T ss_pred             HHHHHhc----ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence            7777766    66677777777777777777777777777777666531           22233334444445555555


Q ss_pred             HHHHHHHhhhccCCC----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCC
Q 005632          298 ALKYYHFLETNAGTD----NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSP  373 (687)
Q Consensus       298 A~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  373 (687)
                      |.+.|..++.. +|+    ++.+|.++|.+...+|+..+|+...+.+++++|....++...|.++..++++++|.+.+++
T Consensus       268 A~E~Yteal~i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~  346 (486)
T KOG0550|consen  268 AYECYTEALNI-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK  346 (486)
T ss_pred             HHHHHHHhhcC-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555444 232    2334444455555555555555555555555555555555555555555555555555554


Q ss_pred             CCcC
Q 005632          374 PKDL  377 (687)
Q Consensus       374 a~~~  377 (687)
                      +.+.
T Consensus       347 a~q~  350 (486)
T KOG0550|consen  347 AMQL  350 (486)
T ss_pred             HHhh
Confidence            4443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=8e-15  Score=138.18  Aligned_cols=488  Identities=12%  Similarity=0.064  Sum_probs=378.1

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632           56 LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD  135 (687)
Q Consensus        56 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  135 (687)
                      .|+..+..+--+...|...|..-..++++..|.+.|++|+..+..+...|...+.+-+.......|..++.+++..-|.-
T Consensus        61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            44555555556777899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005632          136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI  215 (687)
Q Consensus       136 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~  215 (687)
                      ...|+....+-..+|+...|.+.|++.++..|+ ..+|......-.+.+..+.|..+|++.+-.+|+-.   .|...+..
T Consensus       141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~---~wikyarF  216 (677)
T KOG1915|consen  141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS---NWIKYARF  216 (677)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH---HHHHHHHH
Confidence            999999999999999999999999999999885 57888888888899999999999999998888754   57888999


Q ss_pred             HHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHH-HHHHHHHHHHhcCC
Q 005632          216 LMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD-LITEVADTLMSLGH  294 (687)
Q Consensus       216 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~  294 (687)
                      -.+.|+..-|...|++++..+++ +.....+....+..-..+..++.|..+|+-++..-|.+... .+......--+-|+
T Consensus       217 E~k~g~~~~aR~VyerAie~~~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd  295 (677)
T KOG1915|consen  217 EEKHGNVALARSVYERAIEFLGD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD  295 (677)
T ss_pred             HHhcCcHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998653 23344555666777778889999999999999887764333 33333333344454


Q ss_pred             h---HHHHH-----HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH---------HHHHHH-H
Q 005632          295 S---NSALK-----YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID---------ARLTLA-S  356 (687)
Q Consensus       295 ~---~~A~~-----~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la-~  356 (687)
                      .   ++++-     .|+..+.. +|.+-++|+..-.+-...|+.+.-.+.|++++...|...+         .|.+.+ .
T Consensus       296 ~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly  374 (677)
T KOG1915|consen  296 KEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY  374 (677)
T ss_pred             hhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence            3   33332     24444544 7888899999888888889999999999999987775322         122222 1


Q ss_pred             HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhh
Q 005632          357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKV  436 (687)
Q Consensus       357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  436 (687)
                      .-+...+.+.+.++|+.++++-|...        +.-+.++...|....++.+...|.+.+-..+-..+.          
T Consensus       375 eEle~ed~ertr~vyq~~l~lIPHkk--------FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK----------  436 (677)
T KOG1915|consen  375 EELEAEDVERTRQVYQACLDLIPHKK--------FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK----------  436 (677)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhcCccc--------chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc----------
Confidence            22345788889999988888777543        234456667777777777777776555555433322          


Q ss_pred             hhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhh
Q 005632          437 KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQE  516 (687)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (687)
                                                                                                      
T Consensus       437 --------------------------------------------------------------------------------  436 (677)
T KOG1915|consen  437 --------------------------------------------------------------------------------  436 (677)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHH
Q 005632          517 AFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCA  596 (687)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  596 (687)
                                      ..++-..+.+..+++.++.+..++++-+..+|.      +...+.-.+..-...|+.+.|..++
T Consensus       437 ----------------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe------~c~~W~kyaElE~~LgdtdRaRaif  494 (677)
T KOG1915|consen  437 ----------------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPE------NCYAWSKYAELETSLGDTDRARAIF  494 (677)
T ss_pred             ----------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH------hhHHHHHHHHHHHHhhhHHHHHHHH
Confidence                            124456677888999999999999999998887      6677777777778889999999999


Q ss_pred             HHHHhhCCCC--chhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccc-----ccc----------
Q 005632          597 KYILQLHPYS--LSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFT-----MAS----------  659 (687)
Q Consensus       597 ~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~-----~~~----------  659 (687)
                      .-++.+..-+  ..+|..+...-...|.    +..+.....+++.+.+.+. +++..+..-.     ..+          
T Consensus       495 elAi~qp~ldmpellwkaYIdFEi~~~E----~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~  569 (677)
T KOG1915|consen  495 ELAISQPALDMPELLWKAYIDFEIEEGE----FEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITD  569 (677)
T ss_pred             HHHhcCcccccHHHHHHHhhhhhhhcch----HHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcch
Confidence            9998765433  3458888888888888    8899999999999866655 6665554433     344          


Q ss_pred             -chHHHHHHHHHHHhh
Q 005632          660 -HHQDAARCYLEAYKL  674 (687)
Q Consensus       660 -~~~~A~~~~~~a~~~  674 (687)
                       +...|...|.+|...
T Consensus       570 ~~~~~AR~iferAn~~  585 (677)
T KOG1915|consen  570 ENIKRARKIFERANTY  585 (677)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence             677899999999764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.79  E-value=7.3e-16  Score=138.34  Aligned_cols=263  Identities=17%  Similarity=0.103  Sum_probs=164.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-----HHHHHHHHHH
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----SALWKQLLTF  111 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~  111 (687)
                      -|-.|..++-..+.++|+..|-.+++.+|...++.+.+|..+.+.|..+.|+...+..+. .|+.     ..+...||.-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence            344566666677777777777777777777777777777777777777777776655544 3332     2345666777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCh
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFLKCGQT  186 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g~~  186 (687)
                      |+..|-++.|...|....+...--..++..+..+|....+|++|++.-++..++.+...     ..+..++..+....+.
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            77777777777777766665444556666677777777777777777776666665542     3344556666666666


Q ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHcCCHHHHHH
Q 005632          187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE-LPLKLKVKAGICYLRLGNMEKAEI  265 (687)
Q Consensus       187 ~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~  265 (687)
                      +.|+..+.++++.+|.+..  +-..+|.++...|+|+.|++.++.+++.    ++ .-..+...+..+|...|+.++.+.
T Consensus       197 d~A~~~l~kAlqa~~~cvR--Asi~lG~v~~~~g~y~~AV~~~e~v~eQ----n~~yl~evl~~L~~~Y~~lg~~~~~~~  270 (389)
T COG2956         197 DRARELLKKALQADKKCVR--ASIILGRVELAKGDYQKAVEALERVLEQ----NPEYLSEVLEMLYECYAQLGKPAEGLN  270 (389)
T ss_pred             HHHHHHHHHHHhhCcccee--hhhhhhHHHHhccchHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            6666666666666666665  3346666666666666666666666655    33 233455556666666666666666


Q ss_pred             HHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          266 LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      .+.++.+..+  .+.+...++.......-.+.|..++.+-+..
T Consensus       271 fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r  311 (389)
T COG2956         271 FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR  311 (389)
T ss_pred             HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence            6666655544  3444444555555555555555555554443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=4.1e-15  Score=134.94  Aligned_cols=359  Identities=17%  Similarity=0.128  Sum_probs=264.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           44 QYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM  122 (687)
Q Consensus        44 ~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  122 (687)
                      ++...+|..|+.+++-.+..+.+. ...-..+|.|+++.|+|++|+..|.-+...+..+.+.+..+|.|++-.|.|.+|.
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~  111 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK  111 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence            456889999999999887655433 3567788999999999999999999998877778889999999999999999998


Q ss_pred             HHHHHHHH--------------hCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632          123 YYIRQAIR--------------AEP------------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG  176 (687)
Q Consensus       123 ~~~~~a~~--------------~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  176 (687)
                      ....++-+              ++.            +..+-...+|.+....-.|++|++.|.+.+..+|+.......+
T Consensus       112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~  191 (557)
T KOG3785|consen  112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM  191 (557)
T ss_pred             HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence            87665532              111            1122345577777778889999999999999999988888899


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHH-------------------------
Q 005632          177 AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH-------------------------  231 (687)
Q Consensus       177 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------------  231 (687)
                      +.+|.++.-++-+.+++.-.++..|+++-  +.+..+...++.=+-..|....+.                         
T Consensus       192 ALCyyKlDYydvsqevl~vYL~q~pdSti--A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn  269 (557)
T KOG3785|consen  192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTI--AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN  269 (557)
T ss_pred             HHHHHhcchhhhHHHHHHHHHHhCCCcHH--HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence            99999999999999999999999999874  455555444443211112221111                         


Q ss_pred             ---HHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCCh-------HHHHHH
Q 005632          232 ---AQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHS-------NSALKY  301 (687)
Q Consensus       232 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~  301 (687)
                         +++..|+--..-+++..+++..|.++++..+|..+.+.+-   | ..|.-+...|.+....|+-       .-|.+.
T Consensus       270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---P-ttP~EyilKgvv~aalGQe~gSreHlKiAqqf  345 (557)
T KOG3785|consen  270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---P-TTPYEYILKGVVFAALGQETGSREHLKIAQQF  345 (557)
T ss_pred             CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---C-CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence               2222222223345778888999999999999999888763   3 2666666777777766653       334444


Q ss_pred             HHHhhhcc-CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcc
Q 005632          302 YHFLETNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSL  380 (687)
Q Consensus       302 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  380 (687)
                      |+-+-+.. ..+.......+|.+++-..++++.+.++...-...-++....+++++.....|++.+|.+.|-+.......
T Consensus       346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik  425 (557)
T KOG3785|consen  346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK  425 (557)
T ss_pred             HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence            44332221 22334455677888888899999999999888888888889999999999999999999999887765543


Q ss_pred             cCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005632          381 DMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP  419 (687)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  419 (687)
                      +..           -....++++|.+.|.++-|-+.+.+
T Consensus       426 n~~-----------~Y~s~LArCyi~nkkP~lAW~~~lk  453 (557)
T KOG3785|consen  426 NKI-----------LYKSMLARCYIRNKKPQLAWDMMLK  453 (557)
T ss_pred             hhH-----------HHHHHHHHHHHhcCCchHHHHHHHh
Confidence            321           3456789999999999888665544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.79  E-value=6.3e-16  Score=138.74  Aligned_cols=271  Identities=13%  Similarity=0.124  Sum_probs=236.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASF  145 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~  145 (687)
                      -+..|.-+.-.++.++|++.|..+++.+|...++...||.++.+.|..+.|+..-+..+. .|+.     .-+...+|.-
T Consensus        38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence            355677788889999999999999999999999999999999999999999998877665 4544     3478889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHHcchH
Q 005632          146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL---SVIDLLVAILMENNAY  222 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~la~~~~~~~~~  222 (687)
                      |+..|-++.|...|....+...--..+...|..+|....+|++|++..++..+..+.....   ..+..++..+....+.
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            9999999999999999987666667889999999999999999999999999998877553   3466778888888999


Q ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005632          223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY  302 (687)
Q Consensus       223 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  302 (687)
                      +.|...+.++++.    ++....+-+.+|.++...|+++.|++.++.+++.+|.-.+++...+..+|...|+.++.+.++
T Consensus       197 d~A~~~l~kAlqa----~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL  272 (389)
T COG2956         197 DRARELLKKALQA----DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL  272 (389)
T ss_pred             HHHHHHHHHHHhh----CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999    889999999999999999999999999999999999878889999999999999999999999


Q ss_pred             HHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH
Q 005632          303 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI  348 (687)
Q Consensus       303 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  348 (687)
                      .++.+.  ...+.+-..++..-....-.+.|..++.+-+...|+-.
T Consensus       273 ~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~  316 (389)
T COG2956         273 RRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR  316 (389)
T ss_pred             HHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence            998865  33455566677777777778899999999999888643

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.77  E-value=8.9e-16  Score=155.07  Aligned_cols=312  Identities=16%  Similarity=0.100  Sum_probs=168.0

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI  140 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  140 (687)
                      +|+++.++..+|.++...|+.+.+...+.++....|.+   .+.....+.++...|++++|...++++++.+|++..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            56666666666666666666666666666655554432   334445566666666666666666666666666665544


Q ss_pred             HHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 005632          141 HLASFYVEIGDY----EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL  216 (687)
Q Consensus       141 ~la~~~~~~g~~----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~  216 (687)
                      . +..+...|++    ..+...+.......|........+|.++...|++++|+..++++++..|++..  ++..+|.++
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~--~~~~la~i~  158 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW--AVHAVAHVL  158 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH--HHHHHHHHH
Confidence            3 3333333332    33333333222334444555556666666666666666666666666666643  455666666


Q ss_pred             HHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-hhHHHH--H-HHHHHHHhc
Q 005632          217 MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLI--T-EVADTLMSL  292 (687)
Q Consensus       217 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~--~-~la~~~~~~  292 (687)
                      ...|++++|+.++++++...+.+.......+..++.++...|++++|+..+++++...+. ......  . .+...+...
T Consensus       159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  238 (355)
T cd05804         159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA  238 (355)
T ss_pred             HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence            666666666666666665532211222234455666666666666666666665433221 011111  0 122222333


Q ss_pred             CChHHHHHH--HH-Hhhhc-cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHH
Q 005632          293 GHSNSALKY--YH-FLETN-AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED---------NIDARLTLASLLL  359 (687)
Q Consensus       293 g~~~~A~~~--~~-~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~  359 (687)
                      |....+..+  +. ..... ..+.........+.++...|+.++|...++.+......         ........+.++.
T Consensus       239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~  318 (355)
T cd05804         239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF  318 (355)
T ss_pred             CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence            322222222  11 11100 01112223335667777778888888877776553322         2345566777788


Q ss_pred             HcCCHHHHHHhcCCCCcCC
Q 005632          360 EEAKEEEAITLLSPPKDLD  378 (687)
Q Consensus       360 ~~g~~~~A~~~~~~a~~~~  378 (687)
                      ..|++++|...+..++...
T Consensus       319 ~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         319 AEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HcCCHHHHHHHHHHHHHHH
Confidence            8888888888887776543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=99.77  E-value=5.7e-16  Score=148.63  Aligned_cols=219  Identities=14%  Similarity=0.126  Sum_probs=188.8

Q ss_pred             hhHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632           32 PGVTKMLGEA-SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQLL  109 (687)
Q Consensus        32 ~~~~~~~~~a-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la  109 (687)
                      ++....+..- .++...+.+++|+..+.++++.+|++..+|...+.++...| ++++++..+.+++..+|++..+|...+
T Consensus        34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~  113 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR  113 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence            4444444322 23456789999999999999999999999999999999998 689999999999999999999999999


Q ss_pred             HHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---C
Q 005632          110 TFAVQKGDT--AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC---G  184 (687)
Q Consensus       110 ~~~~~~g~~--~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g  184 (687)
                      .++...|+.  ++++.+++++++.+|.+..+|...+.++...|++++|++.+.++++.+|.+..+|...+.++...   |
T Consensus       114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence            999888874  78899999999999999999999999999999999999999999999999999999999988776   3


Q ss_pred             Ch----HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632          185 QT----ARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR  256 (687)
Q Consensus       185 ~~----~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (687)
                      .+    ++++.+..+++..+|++..  +|+.++.++..    .++..+|+..+.+++..    .+....++..++.++..
T Consensus       194 ~~~~~~e~el~y~~~aI~~~P~N~S--aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~----~~~s~~al~~l~d~~~~  267 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILANPRNES--PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK----DSNHVFALSDLLDLLCE  267 (320)
T ss_pred             cccccHHHHHHHHHHHHHhCCCCcC--HHHHHHHHHhcCCcccccchhHHHHHHHhhcc----cCCcHHHHHHHHHHHHh
Confidence            33    4788888899999999987  78899988887    35567788888887775    67777777888888765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.76  E-value=4.8e-15  Score=149.76  Aligned_cols=311  Identities=17%  Similarity=0.061  Sum_probs=232.5

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      |..+..++..|..+...|+.+.|...+.++....|.+   .+..+..+.++...|++++|...+++++..+|++..++..
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~   82 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL   82 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            4456778888999999999999999999998887754   4567888999999999999999999999999999877765


Q ss_pred             HHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632          108 LLTFAVQKGDT----AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC  183 (687)
Q Consensus       108 la~~~~~~g~~----~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  183 (687)
                       +..+...|++    ..+...+......+|........+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~  161 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence             5555555544    44444444433566777788889999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHH---HHHHHHHHHcC
Q 005632          184 GQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK---VKAGICYLRLG  258 (687)
Q Consensus       184 g~~~~A~~~~~~~~~~~p~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~  258 (687)
                      |++++|+..+++++...|.++..  ..+..++.++...|++++|+..+++++...+.  .......   ..+...+...|
T Consensus       162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g  239 (355)
T cd05804         162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE--SDPALDLLDAASLLWRLELAG  239 (355)
T ss_pred             CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC--CChHHHHhhHHHHHHHHHhcC
Confidence            99999999999999988754432  24567999999999999999999998654110  1111111   12223333444


Q ss_pred             CHHHHHHH--H-HHHhhhCc-hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCC--------CcHHHHHHHHHHHHH
Q 005632          259 NMEKAEIL--F-ADLQWKNA-IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGT--------DNGYLYLKLAECYLS  326 (687)
Q Consensus       259 ~~~~A~~~--~-~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~la~~~~~  326 (687)
                      ....+...  + .......+ ..........+.++...|+.++|...++.+......        ....+....+.++..
T Consensus       240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~  319 (355)
T cd05804         240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA  319 (355)
T ss_pred             CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence            33333322  1 11111111 112223346788889999999999999987654222        135566788999999


Q ss_pred             hhcHHHHHHHHHHHHHhc
Q 005632          327 LKERAHAIMFFYKALDRF  344 (687)
Q Consensus       327 ~g~~~~A~~~~~~al~~~  344 (687)
                      .|++++|...+..++...
T Consensus       320 ~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         320 EGNYATALELLGPVRDDL  337 (355)
T ss_pred             cCCHHHHHHHHHHHHHHH
Confidence            999999999999999765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.75  E-value=1.7e-15  Score=151.40  Aligned_cols=244  Identities=21%  Similarity=0.249  Sum_probs=175.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 005632           99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL-----  165 (687)
Q Consensus        99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----  165 (687)
                      |.-..+...++..|...|+++.|+..+++++..        .|.-......+|.+|..++++.+|+..|++++.+     
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            444455667888888888888888888888876        3434444556888888888888888888888865     


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----CCc-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632          166 ---FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS-----DAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVR  236 (687)
Q Consensus       166 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  236 (687)
                         +|....++.+||.+|...|++++|..++++++++...     .+. ...+..++.++...+++++|..+++++++++
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence               2233456778888888888888888888888776321     111 1246677888888888888888888887764


Q ss_pred             c----cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc-------hhhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 005632          237 F----SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-------IDHADLITEVADTLMSLGHSNSALKYYHFL  305 (687)
Q Consensus       237 ~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  305 (687)
                      .    ..++.-...+.++|.+|..+|++++|...+++++....       ......+..+|..+.+.+++.+|...|.++
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~  435 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA  435 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            2    33335567777888888888888888888888766431       123456777888888888887777777765


Q ss_pred             hhc------cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632          306 ETN------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD  342 (687)
Q Consensus       306 ~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  342 (687)
                      ...      .+|+....+.+||.+|..+|++++|+++.++++.
T Consensus       436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            433      3455667778888888888888888888888774

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.75  E-value=2.2e-14  Score=145.59  Aligned_cols=142  Identities=17%  Similarity=0.028  Sum_probs=121.2

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632          278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL  357 (687)
Q Consensus       278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  357 (687)
                      ...+++.++..|...|++++|++++++++.. .|..++.++..|.++...|++.+|.+.++.+-.+++.+--+-...+..
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            3456788999999999999999999999987 899999999999999999999999999999999999998888889999


Q ss_pred             HHHcCCHHHHHHhcCCCCcCCcccCCC--CCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 005632          358 LLEEAKEEEAITLLSPPKDLDSLDMNS--DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL  425 (687)
Q Consensus       358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  425 (687)
                      +++.|+.++|.+.+......+. ++..  ...+..|    .....|.+|.+.|++..|++.|..+.+..-
T Consensus       272 ~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~W----f~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  272 LLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMW----FETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             HHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999999999887655442 2111  1112234    667889999999999999999999987753

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=5.4e-15  Score=134.23  Aligned_cols=363  Identities=15%  Similarity=0.092  Sum_probs=269.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------------CC----
Q 005632           38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------------SP----   99 (687)
Q Consensus        38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------~p----   99 (687)
                      +-.|.+++..|+|++|+..|.-+...+.-+.+.+..++.|++-.|.|.+|.....++-+.              +.    
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~  140 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI  140 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence            335999999999999999999998877668899999999999999999999887765321              10    


Q ss_pred             --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632          100 --------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD  171 (687)
Q Consensus       100 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  171 (687)
                              +..+-...+|.+.+..-.|++|++.|.+++..+|+....-..+|.||.++.-++-+.+.+.-.++..|+++-
T Consensus       141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti  220 (557)
T KOG3785|consen  141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI  220 (557)
T ss_pred             HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence                    111334567777788888999999999999999999888899999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH----------------------------hCCCC--CcHHHHHHHHHHHHHcch
Q 005632          172 ATKTGAQLFLKCGQTARSIGILEEYLK----------------------------VHPSD--ADLSVIDLLVAILMENNA  221 (687)
Q Consensus       172 ~~~~la~~~~~~g~~~~A~~~~~~~~~----------------------------~~p~~--~~~~~~~~la~~~~~~~~  221 (687)
                      +....+...++.=.-.-|......+.+                            .-|.-  .-+++..+++..|.++++
T Consensus       221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d  300 (557)
T KOG3785|consen  221 AKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND  300 (557)
T ss_pred             HHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc
Confidence            888777766654222222222222111                            11211  011356688888999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-------Cc-hhhHHHHHHHHHHHHhcC
Q 005632          222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK-------NA-IDHADLITEVADTLMSLG  293 (687)
Q Consensus       222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~-~~~~~~~~~la~~~~~~g  293 (687)
                      ..+|+...+..       +|..+.-+...|.++...|+--...++++-+.+-       .. -+...-...++..++-..
T Consensus       301 VqeA~~L~Kdl-------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~  373 (557)
T KOG3785|consen  301 VQEAISLCKDL-------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF  373 (557)
T ss_pred             HHHHHHHHhhc-------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence            99999887654       6777777888888888888765555554443211       00 123344567788888888


Q ss_pred             ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632          294 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLS  372 (687)
Q Consensus       294 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~  372 (687)
                      ++++.+.++..+..- ..++....+++|.++...|++.+|.+.|-++-...-.+ ......|+.||...++.+-|...+-
T Consensus       374 qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l  452 (557)
T KOG3785|consen  374 QFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML  452 (557)
T ss_pred             HHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            999999999887765 66777888999999999999999999998876554233 4445679999999999999999987


Q ss_pred             CCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005632          373 PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV  421 (687)
Q Consensus       373 ~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  421 (687)
                      +.......             ...+..++...+..+++-=|.+.|..+-
T Consensus       453 k~~t~~e~-------------fsLLqlIAn~CYk~~eFyyaaKAFd~lE  488 (557)
T KOG3785|consen  453 KTNTPSER-------------FSLLQLIANDCYKANEFYYAAKAFDELE  488 (557)
T ss_pred             hcCCchhH-------------HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            65432221             1356667777778887777766666554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.74  E-value=1.5e-15  Score=151.86  Aligned_cols=243  Identities=15%  Similarity=0.124  Sum_probs=154.7

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA----  131 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----  131 (687)
                      .|.-..+...++..|...|++++|+..++.+++.        .|.-......+|.+|..++++.+|+..|++++.+    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            4444555566777777777777777777777665        3333344445777777777777777777777663    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632          132 ----EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP--------DNVDATKTGAQLFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       132 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  199 (687)
                          +|....++.+||.+|...|++++|..++++++++..        .-...+..++.++..++++++|..++++++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence                233345567777777777777777777777766521        12344566677777777777777777776665


Q ss_pred             C-----CCC-CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHh----ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632          200 H-----PSD-ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR----FSGKELPLKLKVKAGICYLRLGNMEKAEILFAD  269 (687)
Q Consensus       200 ~-----p~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  269 (687)
                      .     +.+ ....++.++|.+|...|++++|.+++++++.+.    +.........+..+|..+.+.+.+.+|...|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence            2     222 122356677777777777777777777777664    233445556666677777777777766666665


Q ss_pred             Hhh------hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632          270 LQW------KNAIDHADLITEVADTLMSLGHSNSALKYYHFLE  306 (687)
Q Consensus       270 ~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  306 (687)
                      +..      .+.++....+.+|+.+|..+|++++|+++.+.++
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            432      1122355567777777777777777777777665

>PLN02789 farnesyltranstransferase

Probab=99.73  E-value=5.5e-15  Score=141.86  Aligned_cols=185  Identities=11%  Similarity=0.085  Sum_probs=121.3

Q ss_pred             CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      +..+++-.+-.++...+..++|+..+.+++.++|.+..+|...+.++...| ++++++..+++++..+|++..+|...+.
T Consensus        35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~  114 (320)
T PLN02789         35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW  114 (320)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence            344455444555666677777777777777777777777777777777776 5677777777777777777777777777


Q ss_pred             HHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc--
Q 005632          145 FYVEIGDY--EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN--  220 (687)
Q Consensus       145 ~~~~~g~~--~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~--  220 (687)
                      ++...|+.  ++++.++.++++.+|++..+|...+.++...|++++++..+.++++.+|.+..  +|+..+.+....+  
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s--AW~~R~~vl~~~~~l  192 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS--AWNQRYFVITRSPLL  192 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh--HHHHHHHHHHhcccc
Confidence            77766653  56677777777777777777777777777777777777777777777777665  5666666655442  


Q ss_pred             -hH----HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632          221 -AY----EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR  256 (687)
Q Consensus       221 -~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (687)
                       .+    ++++.+..+++..    .|.+..+|..++.++..
T Consensus       193 ~~~~~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAILA----NPRNESPWRYLRGLFKD  229 (320)
T ss_pred             ccccccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhc
Confidence             22    2344444444444    44444444444444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.71  E-value=2e-12  Score=131.60  Aligned_cols=305  Identities=15%  Similarity=0.134  Sum_probs=210.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      ...++-++.++...|++++|++.+++....-++...++-..|.++..+|++++|...|...+..+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            34566778888899999999999988888888888888999999999999999999999999999999988888888873


Q ss_pred             HcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632          114 QKG-----DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK-AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA  187 (687)
Q Consensus       114 ~~g-----~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  187 (687)
                      ...     +.+.-...|+......|....+... ...+..-..+.. +..++...+..  .-|.....+-.+|....+..
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl-~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL-PLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAA  160 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhHh-hcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHH
Confidence            332     4667778888887777765433222 111112223333 33334444433  34555555555555333333


Q ss_pred             HHHHHHHHHHHh---C----------CCCCcH--HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 005632          188 RSIGILEEYLKV---H----------PSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGI  252 (687)
Q Consensus       188 ~A~~~~~~~~~~---~----------p~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~  252 (687)
                      -...++......   .          ...+..  .+++.++..|...|++++|+.++++++..    .|..+..++..|.
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~Kar  236 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKAR  236 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHH
Confidence            233333333221   0          011111  24577888888888888888888888888    7888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCC-------cHHHHHHHHHHH
Q 005632          253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-GTD-------NGYLYLKLAECY  324 (687)
Q Consensus       253 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~-------~~~~~~~la~~~  324 (687)
                      ++-..|++.+|...++.+...+.. +--+....+..+++.|+.++|...+....... +|.       ..+.....|.+|
T Consensus       237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~  315 (517)
T PF12569_consen  237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY  315 (517)
T ss_pred             HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence            888888888888888888777664 66666677888888888888888887665432 111       123345668888


Q ss_pred             HHhhcHHHHHHHHHHHHHhcCC
Q 005632          325 LSLKERAHAIMFFYKALDRFED  346 (687)
Q Consensus       325 ~~~g~~~~A~~~~~~al~~~p~  346 (687)
                      .+.|++..|+..|..+.+...+
T Consensus       316 ~r~~~~~~ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  316 LRQGDYGLALKRFHAVLKHFDD  337 (517)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHH
Confidence            8888888888888888776543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=8.3e-13  Score=128.57  Aligned_cols=372  Identities=11%  Similarity=0.032  Sum_probs=245.7

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      |.+...+..+..++.+.+.|++|+...+.-..... .....+..+.|.++.+..++|+..++   ..++.+.......|.
T Consensus        43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ  118 (652)
T KOG2376|consen   43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ  118 (652)
T ss_pred             CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence            56677777888999999999999955444222111 11223789999999999999999998   456666778888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A  189 (687)
                      +++++|+|++|+..|+..++.+.++.+.............  ..+ . ..+.....|. +.+.+++.+.++...|+|.+|
T Consensus       119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA  194 (652)
T KOG2376|consen  119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQA  194 (652)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence            9999999999999999999987766655443322211111  111 1 2333334444 568899999999999999999


Q ss_pred             HHHHHHHHHhC-----CC--C-Cc-----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632          190 IGILEEYLKVH-----PS--D-AD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR  256 (687)
Q Consensus       190 ~~~~~~~~~~~-----p~--~-~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (687)
                      ++.+++++++.     .+  + .+     ..+...++.++..+|+.++|...|...+...+.+.+....+..++..+-..
T Consensus       195 ~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d  274 (652)
T KOG2376|consen  195 IELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKD  274 (652)
T ss_pred             HHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccc
Confidence            99999995431     11  1 11     125668899999999999999999999998555554444444444333222


Q ss_pred             cCCHH-HHHHHHHHHhhhCc---------hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Q 005632          257 LGNME-KAEILFADLQWKNA---------IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS  326 (687)
Q Consensus       257 ~~~~~-~A~~~~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~  326 (687)
                      ..-++ .++..++......+         .....++.+.+.+.+..+.-+.+.+.....-.. .|....--.........
T Consensus       275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~-~p~~~~~~ll~~~t~~~  353 (652)
T KOG2376|consen  275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM-SPESLFPILLQEATKVR  353 (652)
T ss_pred             cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc-CchHHHHHHHHHHHHHH
Confidence            21111 12222222111111         124455667777777777777777776544433 34333222333333333


Q ss_pred             hhcHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHhcCCCC--------cCCcccCCCCCCChhhhhHHHH
Q 005632          327 LKERAHAIMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLSPPK--------DLDSLDMNSDKSNPWWLNEKII  397 (687)
Q Consensus       327 ~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~--------~~~~~~~~~~~~~~~~~~~~~~  397 (687)
                      ...+.+|.+.+....+.+|.+ ..+.+.++.+...+|+++.|++.+....        +....             +.+-
T Consensus       354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~-------------P~~V  420 (652)
T KOG2376|consen  354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL-------------PGTV  420 (652)
T ss_pred             HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC-------------hhHH
Confidence            447899999999999999988 6788889999999999999999998332        22211             1244


Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          398 MKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       398 ~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      ..+...+...++.+-|...+...+.-.
T Consensus       421 ~aiv~l~~~~~~~~~a~~vl~~Ai~~~  447 (652)
T KOG2376|consen  421 GAIVALYYKIKDNDSASAVLDSAIKWW  447 (652)
T ss_pred             HHHHHHHHhccCCccHHHHHHHHHHHH
Confidence            455556667777777777666666443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.69  E-value=4.2e-15  Score=140.08  Aligned_cols=190  Identities=14%  Similarity=0.062  Sum_probs=153.1

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH--
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA--  103 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--  103 (687)
                      ..+..+..++..|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|+++++..|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4456778899999999999999999999999999999876   57899999999999999999999999999998765  


Q ss_pred             -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632          104 -LWKQLLTFAVQK--------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK  174 (687)
Q Consensus       104 -~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  174 (687)
                       +++.+|.++...        |++++|+..+++++..+|++..++..+..+....+    .             ......
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~  170 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL  170 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence             688899999876        78999999999999999998765433322211100    0             012235


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          175 TGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      .+|.++...|++.+|+..++++++..|+.+. ..++..+|.++...|++++|..+++.....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7788888888888888888888888876542 347888888888888888888888877665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=2.7e-12  Score=119.57  Aligned_cols=294  Identities=18%  Similarity=0.108  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC-CHHHHHHHHHHHHH
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-DSALWKQLLTFAVQ  114 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~  114 (687)
                      .....|..-+..|+|.+|.....+.-+..+....++..-+.+.-++|+++.|-.++.++-+..++ ........+.+...
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~  165 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence            45567777888888888888888877776666667777778888888888888888888887443 34556677888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HH--HHHHHH--HHHHcCChHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-DA--TKTGAQ--LFLKCGQTARS  189 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~--~~~la~--~~~~~g~~~~A  189 (687)
                      .|+++.|.....++++..|.++.+......+|...|++......+.+..+..--+. +.  +-..+.  ++.+..+-..+
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~  245 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS  245 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence            88888888888888888888888888888888888888888888877766433221 11  111111  01111111111


Q ss_pred             HH---HHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHH
Q 005632          190 IG---ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL  266 (687)
Q Consensus       190 ~~---~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  266 (687)
                      ..   +.+..-..-..++.  +...++.-+...|+.++|.+..+.+++.    .-+.. +...  .-....+++..=++.
T Consensus       246 ~gL~~~W~~~pr~lr~~p~--l~~~~a~~li~l~~~~~A~~~i~~~Lk~----~~D~~-L~~~--~~~l~~~d~~~l~k~  316 (400)
T COG3071         246 EGLKTWWKNQPRKLRNDPE--LVVAYAERLIRLGDHDEAQEIIEDALKR----QWDPR-LCRL--IPRLRPGDPEPLIKA  316 (400)
T ss_pred             hHHHHHHHhccHHhhcChh--HHHHHHHHHHHcCChHHHHHHHHHHHHh----ccChh-HHHH--HhhcCCCCchHHHHH
Confidence            11   12111111111222  3345555556666666666666666554    11111 1111  112233444444444


Q ss_pred             HHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005632          267 FADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL  341 (687)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  341 (687)
                      .++.+...|. ++..+..+|..+++.+.|.+|..+|+.+++.  ..+...+..+|.++.+.|+..+|.+.+++++
T Consensus       317 ~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         317 AEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4444444442 4455555555555555555555555544432  3334444445555555555555555555544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.64  E-value=6.3e-15  Score=125.10  Aligned_cols=126  Identities=12%  Similarity=0.075  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632           54 ISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP  133 (687)
Q Consensus        54 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  133 (687)
                      ..+|+++++.+|++   ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            45677777777754   556788888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       134 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      +++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+...
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888777777766543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.64  E-value=3.3e-14  Score=133.93  Aligned_cols=192  Identities=14%  Similarity=0.075  Sum_probs=157.6

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS---  137 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---  137 (687)
                      ++..+..++.+|..++..|++++|+..|++++...|+++   .+++.+|.++...|++++|+..|+++++.+|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            345678999999999999999999999999999998875   57889999999999999999999999999998765   


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHH
Q 005632          138 LRIHLASFYVEI--------GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI  209 (687)
Q Consensus       138 ~~~~la~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  209 (687)
                      +++.+|.++...        |++++|++.|++++..+|++..+...+..+....    ..   .            ....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~---~------------~~~~  169 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR---L------------AGKE  169 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH---H------------HHHH
Confidence            688889998876        7899999999999999998876654333221111    00   0            0123


Q ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632          210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  275 (687)
                      ..+|.++...|++.+|+..+++++..++ +.+....+++.+|.++...|++++|..+++.+....|
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYP-DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCC-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4788999999999999999999999844 2466789999999999999999999999998877655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.63  E-value=3e-12  Score=119.30  Aligned_cols=299  Identities=16%  Similarity=0.119  Sum_probs=233.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK-DISLRIHLASFYVEI  149 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~  149 (687)
                      ...-|..-+..|+|.+|.....+.-+..+...-.+..-+...-+.|+++.|-.++.++-+..++ ...+....+.+....
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            3444666677899999999999988887777777888899999999999999999999998444 356788899999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-HHHHHHHHH--HHHHcchHHHHH
Q 005632          150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVA--ILMENNAYEKTL  226 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~la~--~~~~~~~~~~A~  226 (687)
                      |+++.|.....++.+..|.++.+......+|...|++.+...++.++-+..--+.. ..-+...+.  ++.+.++-..+.
T Consensus       167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~  246 (400)
T COG3071         167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE  246 (400)
T ss_pred             CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence            99999999999999999999999999999999999999999999988776433221 111111111  112222222222


Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632          227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE  306 (687)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  306 (687)
                      . +....+..|..-..++.+...++.-+...|+.++|....++.++..-  ++.....++  ...-+++..=++..++.+
T Consensus       247 g-L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~L~~~~~--~l~~~d~~~l~k~~e~~l  321 (400)
T COG3071         247 G-LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPRLCRLIP--RLRPGDPEPLIKAAEKWL  321 (400)
T ss_pred             H-HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--ChhHHHHHh--hcCCCCchHHHHHHHHHH
Confidence            2 22222222322445677788889999999999999999999988754  333222222  346678888888888888


Q ss_pred             hccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632          307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD  376 (687)
Q Consensus       307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  376 (687)
                      .. +|++|.++..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+..+.++.
T Consensus       322 ~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         322 KQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             Hh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            77 8999999999999999999999999999999999886 56678899999999999999999887663

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.63  E-value=2.5e-10  Score=112.51  Aligned_cols=162  Identities=15%  Similarity=0.051  Sum_probs=93.2

Q ss_pred             HcchHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc---hhhHHHHHHHHHHHHhc
Q 005632          218 ENNAYEKTLQHIEHAQIVRFSG--KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA---IDHADLITEVADTLMSL  292 (687)
Q Consensus       218 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~  292 (687)
                      ..|+..+-+..|..++....+.  ......+|..+|..|...|+.+.|..+|+++....-   .+-..+|...|..-...
T Consensus       359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            3455555555555555543211  122345566666666666666666666666654321   12345566666666666


Q ss_pred             CChHHHHHHHHHhhhccCC-----------------CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632          293 GHSNSALKYYHFLETNAGT-----------------DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA  355 (687)
Q Consensus       293 g~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  355 (687)
                      .+++.|+.+++.+...+.+                 ....+|..++......|-++.....|++++++.--.|.+..+.|
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA  518 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA  518 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            6666666666665533111                 02334555666666666666666666666666666666666666


Q ss_pred             HHHHHcCCHHHHHHhcCCCCcCCc
Q 005632          356 SLLLEEAKEEEAITLLSPPKDLDS  379 (687)
Q Consensus       356 ~~~~~~g~~~~A~~~~~~a~~~~~  379 (687)
                      ..+....-++++.+.|++-+.+++
T Consensus       519 mfLEeh~yfeesFk~YErgI~LFk  542 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISLFK  542 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCccCC
Confidence            666666666666666666666555

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=1.2e-12  Score=116.47  Aligned_cols=355  Identities=15%  Similarity=0.040  Sum_probs=235.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632           44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY  123 (687)
Q Consensus        44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  123 (687)
                      +.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|-++|++.-.+.|......+..+..+++.+.+..|+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            46778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       124 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                      ....+.....-.......-+.+....+++..+....++.-.  .++.+...+.|.+.++.|+++.|++-|+.+++...-.
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq  177 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ  177 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence            77766543111233444556666677777777665554321  1456777788888888888888888888888877666


Q ss_pred             CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHH
Q 005632          204 ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLIT  283 (687)
Q Consensus       204 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  283 (687)
                      +.  +-++++.++++.|+++.|+++....++.--.++|....-...-|.--...|+.          +....+.-.+++.
T Consensus       178 pl--lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt----------~~lh~Sal~eAfN  245 (459)
T KOG4340|consen  178 PL--LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT----------LVLHQSALVEAFN  245 (459)
T ss_pred             ch--hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch----------HHHHHHHHHHHhh
Confidence            64  56678888888888888888887777652222221110000000000000110          0011112455677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhcc-CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 005632          284 EVADTLMSLGHSNSALKYYHFLETNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA  362 (687)
Q Consensus       284 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  362 (687)
                      ..+-++++.|+++.|.+.+..+-... ..-+|..+.+++..- ..+++.+...-++-.+.++|--++..-++-.++++..
T Consensus       246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe  324 (459)
T KOG4340|consen  246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE  324 (459)
T ss_pred             hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence            77888999999999998885443221 223677777776543 3467778888888889999977888889999999998


Q ss_pred             CHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHh
Q 005632          363 KEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYR-AKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       363 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~  424 (687)
                      -++-|..++-.--...-.          +.. +.++.+-..+. .+-..++|.+-+..+-+..
T Consensus       325 yf~lAADvLAEn~~lTyk----------~L~-~Yly~LLdaLIt~qT~pEea~KKL~~La~~l  376 (459)
T KOG4340|consen  325 YFDLAADVLAENAHLTYK----------FLT-PYLYDLLDALITCQTAPEEAFKKLDGLAGML  376 (459)
T ss_pred             HHhHHHHHHhhCcchhHH----------Hhh-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            899988887643222111          111 23444444433 4456666766665555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.61  E-value=5e-11  Score=117.24  Aligned_cols=543  Identities=13%  Similarity=0.101  Sum_probs=330.8

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHH--c------CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           51 EQAISLLKEVVRLSPNLPETYNTLGLAHSA--L------GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM  122 (687)
Q Consensus        51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  122 (687)
                      .+-.-+|+++++.-|.+...|+..-..-..  .      ..|..--.+|++++-.-.+-+..|......+..+|+...-.
T Consensus        43 k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR  122 (835)
T KOG2047|consen   43 KQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTR  122 (835)
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHH
Confidence            344456777777777776666554322211  1      12344445555555544455666777777777777777777


Q ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Q 005632          123 YYIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV-  199 (687)
Q Consensus       123 ~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-  199 (687)
                      ..|.+++..-|-  +..+|-..-......|-++-++..|++.++..|...   ......+...+++++|.+.+..++.. 
T Consensus       123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d  199 (835)
T KOG2047|consen  123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQD  199 (835)
T ss_pred             HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCch
Confidence            777777765552  223444444455556666677777777777666542   23334455566666666655554432 


Q ss_pred             -------------------------------------------CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632          200 -------------------------------------------HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVR  236 (687)
Q Consensus       200 -------------------------------------------~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  236 (687)
                                                                 .++... ..|..||..|.+.|.+++|...|++++...
T Consensus       200 ~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g-~Lw~SLAdYYIr~g~~ekarDvyeeai~~v  278 (835)
T KOG2047|consen  200 EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG-FLWCSLADYYIRSGLFEKARDVYEEAIQTV  278 (835)
T ss_pred             hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence                                                       222222 467888999999999999999999988773


Q ss_pred             ccCCCchHH-----HHHHHHHHHHHcC-------------CHHHHHHHHHHHhhhCch-----------hhHHHHHHHHH
Q 005632          237 FSGKELPLK-----LKVKAGICYLRLG-------------NMEKAEILFADLQWKNAI-----------DHADLITEVAD  287 (687)
Q Consensus       237 ~~~~~~~~~-----~~~~l~~~~~~~~-------------~~~~A~~~~~~~~~~~~~-----------~~~~~~~~la~  287 (687)
                      -. -.+...     +.+.-..+..+++             +.+-....|+.++...|-           .+..-|..  .
T Consensus       279 ~t-vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--R  355 (835)
T KOG2047|consen  279 MT-VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--R  355 (835)
T ss_pred             ee-hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--h
Confidence            21 111111     1111111111111             223334444444333221           13333333  3


Q ss_pred             HHHhcCChHHHHHHHHHhhhccCCC-----cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 005632          288 TLMSLGHSNSALKYYHFLETNAGTD-----NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN----IDARLTLASLL  358 (687)
Q Consensus       288 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  358 (687)
                      +-+..|+..+-+..|..++..-+|.     -..+|..+|..|...|+.+.|...|+++.+..-..    ..+|...|..-
T Consensus       356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE  435 (835)
T KOG2047|consen  356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME  435 (835)
T ss_pred             hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence            4456788889999999988764443     34689999999999999999999999999874322    67889999999


Q ss_pred             HHcCCHHHHHHhcCCCCcCCcccC--C---CCCC-ChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhh
Q 005632          359 LEEAKEEEAITLLSPPKDLDSLDM--N---SDKS-NPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQ  432 (687)
Q Consensus       359 ~~~g~~~~A~~~~~~a~~~~~~~~--~---~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  432 (687)
                      ++..+++.|.++++.+........  .   ..+. ........++...+......|-++.....|.+++..-+-....  
T Consensus       436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--  513 (835)
T KOG2047|consen  436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--  513 (835)
T ss_pred             HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--
Confidence            999999999999998875432211  0   0111 1123445677888888888888888888888888654321110  


Q ss_pred             hhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCch
Q 005632          433 KVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDE  512 (687)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (687)
                                  ..+                      ....++....+           |.....-.+|+.         
T Consensus       514 ------------i~N----------------------yAmfLEeh~yf-----------eesFk~YErgI~---------  539 (835)
T KOG2047|consen  514 ------------IIN----------------------YAMFLEEHKYF-----------EESFKAYERGIS---------  539 (835)
T ss_pred             ------------HHH----------------------HHHHHHhhHHH-----------HHHHHHHHcCCc---------
Confidence                        111                      11111111100           001111122332         


Q ss_pred             hhhhhccCCCCCcccCcchhhHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCC
Q 005632          513 SQQEAFREPPLPNLLKNEENQCLIIDLCKA---LASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDP  589 (687)
Q Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  589 (687)
                                   +.+.|..+++....-..   -......+.|..++++++...|.    ++...+..+.+..--..|-.
T Consensus       540 -------------LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp----~~aKtiyLlYA~lEEe~GLa  602 (835)
T KOG2047|consen  540 -------------LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP----EHAKTIYLLYAKLEEEHGLA  602 (835)
T ss_pred             -------------cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHhhHH
Confidence                         44577777766644332   23344689999999999986553    55666666666666667999


Q ss_pred             cchhHHHHHHHhhCCCC--chhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCc--cceeccccccccchHHHH
Q 005632          590 NHGFDCAKYILQLHPYS--LSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPP--IIISGHQFTMASHHQDAA  665 (687)
Q Consensus       590 ~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~~g~~~~~~~~~~~A~  665 (687)
                      ..|+..++.+-..-+..  .++|+++..-....=.    .......++++.+.-|++-.-  .+-.+..-...|..+.|.
T Consensus       603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yG----v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRAR  678 (835)
T KOG2047|consen  603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG----VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRAR  678 (835)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC----CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            99999998877654433  2445555443333322    367788889998888887543  345666667789999999


Q ss_pred             HHHHHHHhhCCC
Q 005632          666 RCYLEAYKLLPE  677 (687)
Q Consensus       666 ~~~~~a~~~~P~  677 (687)
                      ..|..+-+++|-
T Consensus       679 aIya~~sq~~dP  690 (835)
T KOG2047|consen  679 AIYAHGSQICDP  690 (835)
T ss_pred             HHHHhhhhcCCC
Confidence            999999887764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.60  E-value=3.6e-14  Score=120.50  Aligned_cols=125  Identities=15%  Similarity=0.131  Sum_probs=114.1

Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632           88 FDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP  167 (687)
Q Consensus        88 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  167 (687)
                      ..+|+++++++|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46789999999875   567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 005632          168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM  217 (687)
Q Consensus       168 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~  217 (687)
                      +++.+++.+|.++...|++++|+..|++++...|+++.  .+..++.+..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~--~~~~~~~~~~  137 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS--WSEIRQNAQI  137 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHH
Confidence            99999999999999999999999999999999999987  4556665544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.58  E-value=1.6e-13  Score=123.08  Aligned_cols=155  Identities=14%  Similarity=0.166  Sum_probs=127.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632           40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA  119 (687)
Q Consensus        40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  119 (687)
                      -+-.|+..|+++......+...  +|..         -+...++.++++..+++++..+|++...|..+|.++...|+++
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~   90 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD   90 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence            4667888899888655543221  2211         1112677788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632          120 QAMYYIRQAIRAEPKDISLRIHLASFY-VEIGD--YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY  196 (687)
Q Consensus       120 ~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  196 (687)
                      +|+..|++++.++|+++.++..+|.++ ...|+  +++|...++++++.+|+++.+++.+|..+...|++++|+..++++
T Consensus        91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370         91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999874 67677  589999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCc
Q 005632          197 LKVHPSDAD  205 (687)
Q Consensus       197 ~~~~p~~~~  205 (687)
                      ++..|.+.+
T Consensus       171 L~l~~~~~~  179 (198)
T PRK10370        171 LDLNSPRVN  179 (198)
T ss_pred             HhhCCCCcc
Confidence            998887765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.57  E-value=5.6e-13  Score=117.59  Aligned_cols=181  Identities=18%  Similarity=0.188  Sum_probs=158.6

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632           50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAI  129 (687)
Q Consensus        50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  129 (687)
                      ...+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++.+|+..++++.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            334666666777788999888 8899999999999999999999888889998888889999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHH
Q 005632          130 RAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI  209 (687)
Q Consensus       130 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  209 (687)
                      ...|++.++|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..  +.
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~--v~  205 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR--VR  205 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH--HH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998887776664  67


Q ss_pred             HHHHHHHHHcchHHHHHHHHHHHH
Q 005632          210 DLLVAILMENNAYEKTLQHIEHAQ  233 (687)
Q Consensus       210 ~~la~~~~~~~~~~~A~~~~~~~~  233 (687)
                      .+++.+....|++++|.....+-+
T Consensus       206 ~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         206 QNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHHHhhcCChHHHHhhccccc
Confidence            789999999999999887765543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=2.6e-12  Score=114.26  Aligned_cols=368  Identities=11%  Similarity=0.013  Sum_probs=248.6

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      +...+-..|.+|+...+|..|..+|++.-...|......+..+..++..+.+.+|+...........-.......-+.+.
T Consensus        43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk  122 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK  122 (459)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            55556677999999999999999999999999999999999999999999999999998877654222233444456777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      +..+++..+....++.-.  .++.+...+.|.+.++.|+++.|++-|+.+++...-++-.-++++.++++.|+++.|+++
T Consensus       123 Yse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~  200 (459)
T KOG4340|consen  123 YSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH  200 (459)
T ss_pred             cccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence            788888888777766432  256778899999999999999999999999999998999999999999999999999999


Q ss_pred             HHHHHHh----CCCCC--------c---------------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHH
Q 005632          193 LEEYLKV----HPSDA--------D---------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK  245 (687)
Q Consensus       193 ~~~~~~~----~p~~~--------~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  245 (687)
                      ...+++.    +|+-.        +               ..+++..+.++++.|+++.|.+.+...--.  .....++.
T Consensus       201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR--aE~elDPv  278 (459)
T KOG4340|consen  201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPR--AEEELDPV  278 (459)
T ss_pred             HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCc--ccccCCch
Confidence            8888765    33211        0               145666778888999999887766543211  01223344


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHH-H
Q 005632          246 LKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAEC-Y  324 (687)
Q Consensus       246 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~  324 (687)
                      .+.+++..- ..+++.+...-+.-++..+|- .++.+.++-.+|.+..-|+-|.+.+.+-......--....+.+-.. -
T Consensus       279 TLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLI  356 (459)
T KOG4340|consen  279 TLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALI  356 (459)
T ss_pred             hhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHH
Confidence            455555432 245677777777777777773 6778888888899988888888877322111000011122222222 2


Q ss_pred             HHhhcHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHH--cCC---HHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHH
Q 005632          325 LSLKERAHAIMFFYKALDRFEDNIDARLTL-ASLLLE--EAK---EEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIM  398 (687)
Q Consensus       325 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~--~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  398 (687)
                      ...-..++|.+-+...-..-.+   -+..+ +.+...  .++   ...|++.|+..++..-               .+.+
T Consensus       357 t~qT~pEea~KKL~~La~~l~~---kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---------------PVlM  418 (459)
T KOG4340|consen  357 TCQTAPEEAFKKLDGLAGMLTE---KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---------------PVLM  418 (459)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence            2333456665555443322111   11111 111111  111   2234444444444322               3788


Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          399 KLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       399 ~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      ..+++|+...++..+.+.|..-++-.
T Consensus       419 a~AkiyW~~~Dy~~vEk~Fr~SvefC  444 (459)
T KOG4340|consen  419 AQAKIYWNLEDYPMVEKIFRKSVEFC  444 (459)
T ss_pred             HHHHhhccccccHHHHHHHHHHHhhh
Confidence            99999999999999988777766543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.55  E-value=1.7e-11  Score=140.10  Aligned_cols=385  Identities=12%  Similarity=0.011  Sum_probs=272.9

Q ss_pred             hHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc-cCCCCHHHHHHHHH
Q 005632           33 GVTKML-GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH-LSPKDSALWKQLLT  110 (687)
Q Consensus        33 ~~~~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~  110 (687)
                      ....+. ..|..+...|++.+|+..+..+-.. +.-.......+......|++..+..++..+-. ....++......+.
T Consensus       339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~  417 (903)
T PRK04841        339 ELPELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW  417 (903)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence            333443 3366677899999988766554111 11233455667778888998887777655411 11233445567788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPK---------DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTG  176 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l  176 (687)
                      ++...|++++|...+..+....+.         .......++.++...|++++|...+++++...+...     .+...+
T Consensus       418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l  497 (903)
T PRK04841        418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL  497 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            889999999999999988764321         123455678888999999999999999998655432     345678


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC----CchHHHHH
Q 005632          177 AQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK----ELPLKLKV  248 (687)
Q Consensus       177 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~  248 (687)
                      |.++...|++++|...+.+++........    ..++..++.++...|++++|...+++++.......    +....++.
T Consensus       498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  577 (903)
T PRK04841        498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR  577 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence            88999999999999999999876443221    23566789999999999999999999988743211    22234456


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhhC----chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCC-cHHHH----H
Q 005632          249 KAGICYLRLGNMEKAEILFADLQWKN----AIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-GTD-NGYLY----L  318 (687)
Q Consensus       249 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~----~  318 (687)
                      .+|.++...|++++|...+.+++...    +......+..++.++...|++++|...+.++.... ... .....    .
T Consensus       578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~  657 (903)
T PRK04841        578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK  657 (903)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence            78889999999999999999876532    22245566778999999999999999999886541 111 11111    1


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhH
Q 005632          319 KLAECYLSLKERAHAIMFFYKALDRFEDNI----DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNE  394 (687)
Q Consensus       319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  394 (687)
                      .....+...|+.+.|..++.......+...    ..+..++.++...|++++|...+++++........      .....
T Consensus       658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~------~~~~a  731 (903)
T PRK04841        658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL------MSDLN  731 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc------hHHHH
Confidence            122445567899999999877655332222    12467899999999999999999988875432211      11234


Q ss_pred             HHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          395 KIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       395 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      .++..+|.++...|+.++|.+.+.+.++..
T Consensus       732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            688899999999999999999999998765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.55  E-value=2.7e-13  Score=125.80  Aligned_cols=320  Identities=16%  Similarity=0.123  Sum_probs=192.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCCCH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPKDS  102 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~  102 (687)
                      +...+-..|.-+++.|++...+.+|+.+++...++.    .+|..+|.+|+..++|++|+++...=+.+      .-...
T Consensus        16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA   95 (639)
T KOG1130|consen   16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA   95 (639)
T ss_pred             HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence            355666779999999999999999999999877653    46788999999999999999876543322      12233


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG  176 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  176 (687)
                      ..--+||..+-..|.|++|+.+..+-+.+..      ....+++++|.+|...|+.-.-..-=    +....+.++.   
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe----e~g~f~~ev~---  168 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE----EKGAFNAEVT---  168 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh----hcccccHHHH---
Confidence            4456788888899999999988887665432      22467888999888877521100000    0000000000   


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc--cCCCchHHHHHHH
Q 005632          177 AQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRF--SGKELPLKLKVKA  250 (687)
Q Consensus       177 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l  250 (687)
                             ..++.|.++|..-+++.....+    -.++-++|..|+-.|+|+.|+..-+.-+.+..  .+......++.++
T Consensus       169 -------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl  241 (639)
T KOG1130|consen  169 -------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL  241 (639)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc
Confidence                   0112223333322222111100    12445566666666666666655554444311  1111223455566


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhh-----CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-----CCCcHHHHHHH
Q 005632          251 GICYLRLGNMEKAEILFADLQWK-----NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKL  320 (687)
Q Consensus       251 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l  320 (687)
                      |.++.-.|+++.|+++|+..+..     +........+.+|..|.-..++++|+.++++-+.+.     ......+++.+
T Consensus       242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL  321 (639)
T KOG1130|consen  242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL  321 (639)
T ss_pred             chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            66666666666666666654321     112245556777777777778888888777644331     23456777888


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhc-----CC-CHHHHHHHHHHHHHcCCHHH
Q 005632          321 AECYLSLKERAHAIMFFYKALDRF-----ED-NIDARLTLASLLLEEAKEEE  366 (687)
Q Consensus       321 a~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~  366 (687)
                      |..+...|..++|+.+.++.+++.     |. ...+..++...-...|..+.
T Consensus       322 gna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  322 GNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            888888888888888877776652     21 23456667777777775443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.55  E-value=3e-13  Score=121.31  Aligned_cols=126  Identities=23%  Similarity=0.274  Sum_probs=119.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 005632           47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA-VQKGD--TAQAMY  123 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  123 (687)
                      .++.++++..+++++..+|++++.|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999975 67787  599999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA  172 (687)
Q Consensus       124 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  172 (687)
                      .++++++.+|+++.+++.+|..+...|++++|+..++++++..|.+.+-
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            9999999999999999999999999999999999999999998876543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.53  E-value=2.5e-12  Score=113.53  Aligned_cols=181  Identities=15%  Similarity=0.170  Sum_probs=163.6

Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632           84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ  163 (687)
Q Consensus        84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  163 (687)
                      ...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            344666677777889999999 9999999999999999999999999999999999889999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCch
Q 005632          164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP  243 (687)
Q Consensus       164 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  243 (687)
                      ...|++..++..+|.+|.+.|++++|...|.+++++.|.++.  +..++|..+.-.|+++.|..++..+...    .+.+
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad  201 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--IANNLGMSLLLRGDLEDAETLLLPAYLS----PAAD  201 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--hhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCc
Confidence            999999999999999999999999999999999999999886  7889999999999999999999999887    6777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          244 LKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      ..+..+++.+....|++++|..+..+-+
T Consensus       202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         202 SRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            8888899999999999999988777643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.52  E-value=3.9e-10  Score=129.00  Aligned_cols=346  Identities=11%  Similarity=-0.026  Sum_probs=242.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR-AEPKDISLRIHLASFYVE  148 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~  148 (687)
                      .+...+..+...|++.+|...+..+-.. +.-.......+......|++..+..++..+-. ....++......+.++..
T Consensus       343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~  421 (903)
T PRK04841        343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS  421 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence            4455566677788888888766554221 11123344556777788888887777655411 112344456677888899


Q ss_pred             cCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPD---------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---LSVIDLLVAIL  216 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~~~la~~~  216 (687)
                      .|++++|...+..+....+.         .......++.++...|++++|...+++++...+....   ..+...+|.++
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            99999999999988765322         1234556788889999999999999999986554332   12456788899


Q ss_pred             HHcchHHHHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-------hhHHHHHHHHH
Q 005632          217 MENNAYEKTLQHIEHAQIVRFSGKE--LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-------DHADLITEVAD  287 (687)
Q Consensus       217 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~la~  287 (687)
                      ...|++++|...+.+++........  ........++.++...|++++|...+++++.....       .....+..+|.
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  581 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ  581 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            9999999999999999876432222  22356677899999999999999999987653211       12234567788


Q ss_pred             HHHhcCChHHHHHHHHHhhhccC----CCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC---HHHHH----HHHH
Q 005632          288 TLMSLGHSNSALKYYHFLETNAG----TDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN---IDARL----TLAS  356 (687)
Q Consensus       288 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~la~  356 (687)
                      ++...|++++|...+.+++....    ......+..+|.++...|++++|...+.++..+.+..   .....    ....
T Consensus       582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  661 (903)
T PRK04841        582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI  661 (903)
T ss_pred             HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence            99999999999999998765411    1235566778999999999999999999998764322   11111    1224


Q ss_pred             HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      .+...|+.+.|...+.......+..       . |........++.++...|++++|...+.+++...
T Consensus       662 ~~~~~g~~~~A~~~l~~~~~~~~~~-------~-~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~  721 (903)
T PRK04841        662 YWQMTGDKEAAANWLRQAPKPEFAN-------N-HFLQGQWRNIARAQILLGQFDEAEIILEELNENA  721 (903)
T ss_pred             HHHHCCCHHHHHHHHHhcCCCCCcc-------c-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4556899999999987765432211       1 1122346789999999999999999888887653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.52  E-value=4.6e-12  Score=134.54  Aligned_cols=269  Identities=10%  Similarity=-0.023  Sum_probs=153.8

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL  108 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  108 (687)
                      -.|.....+...+..+...|++++|+..++..++.+|+....++.+|.++++.+++.++...  .++...+.+.      
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------   97 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------   97 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------
Confidence            34556777788888888999999999999999999999999999999999999987776655  5554444332      


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                              ++ .+++++...+...+++..+++.+|.||-.+|+.++|...|+++++.+|+++.++.++|..|... +.++
T Consensus        98 --------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         98 --------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             --------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence                    22 3334444444444555555666666666666666666666666666666666666666666555 6666


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC----------------CCchHHHHHHHHH
Q 005632          189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG----------------KELPLKLKVKAGI  252 (687)
Q Consensus       189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~  252 (687)
                      |+.++.+++..                +...++|.++.++..+.+...+.+                .......+.-+-.
T Consensus       168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~  231 (906)
T PRK14720        168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE  231 (906)
T ss_pred             HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence            66665555443                222233344444444443330000                1111222333444


Q ss_pred             HHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHH
Q 005632          253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAH  332 (687)
Q Consensus       253 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  332 (687)
                      +|...+++++++.+++.+++.+|. +..+...++.+|.  +.|.. -..++..+..            ..+--....+..
T Consensus       232 ~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~------------s~l~~~~~~~~~  295 (906)
T PRK14720        232 PYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKM------------SDIGNNRKPVKD  295 (906)
T ss_pred             HHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHH------------hccccCCccHHH
Confidence            555566666666666666666554 5555555555554  22221 2222222211            011111134566


Q ss_pred             HHHHHHHHHHhcCCC
Q 005632          333 AIMFFYKALDRFEDN  347 (687)
Q Consensus       333 A~~~~~~al~~~p~~  347 (687)
                      |+..|++.+..+|++
T Consensus       296 ~i~~fek~i~f~~G~  310 (906)
T PRK14720        296 CIADFEKNIVFDTGN  310 (906)
T ss_pred             HHHHHHHHeeecCCC
Confidence            777777777777665

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.50  E-value=6.5e-12  Score=133.44  Aligned_cols=242  Identities=16%  Similarity=0.106  Sum_probs=176.3

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      .+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++...  .++...+         
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~---------   94 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS---------   94 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence            46888899999999999999999999999999999999999999999999888886666554  4444333         


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY  222 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~  222 (687)
                           ...++ .+++++...+...+.+..+++.+|.+|-++|+.++|...++++++.+|+++.  +++++|..|... +.
T Consensus        95 -----~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~--aLNn~AY~~ae~-dL  165 (906)
T PRK14720         95 -----QNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE--IVKKLATSYEEE-DK  165 (906)
T ss_pred             -----cccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHh-hH
Confidence                 33344 5566666666667888889999999999999999999999999999999986  899999999999 99


Q ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005632          223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY  302 (687)
Q Consensus       223 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  302 (687)
                      ++|+.++.+++..                  +...+++..+..++.+++...|. +.+.+..+-                
T Consensus       166 ~KA~~m~~KAV~~------------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------  210 (906)
T PRK14720        166 EKAITYLKKAIYR------------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------  210 (906)
T ss_pred             HHHHHHHHHHHHH------------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------
Confidence            9999999999977                  55566778888888887776664 333322211                


Q ss_pred             HHhhhc-cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005632          303 HFLETN-AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL  359 (687)
Q Consensus       303 ~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  359 (687)
                      +++... ........+.-+-.+|...++|++++.+++.+++.+|.|..++..++.+|.
T Consensus       211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            111111 011122333444455555566666666666666666666555555555554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=1.9e-11  Score=106.64  Aligned_cols=200  Identities=18%  Similarity=0.183  Sum_probs=156.2

Q ss_pred             cCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           47 YGNFEQAISLLKEVVRLS------PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      ..+.++-+++...++...      |+...++-....+....|+.+-|..++.+.....|++......-|..+...|++++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence            345566666666655432      33344555666777778888888888888888888888888888888888899999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      |+++|+..++.+|.+...+-....+...+|+.-+|++.+...++..+.+.++|..++.+|+..|+|++|.-++++++-+.
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence            99999999988888888888888888888888899999988888889899999999999999999999999999988888


Q ss_pred             CCCCcHHHHHHHHHHHHHcc---hHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 005632          201 PSDADLSVIDLLVAILMENN---AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGI  252 (687)
Q Consensus       201 p~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~  252 (687)
                      |.++.  .+..+|.+++-.|   ++.-|.++|.+++++    .+.+...++.+-.
T Consensus       185 P~n~l--~f~rlae~~Yt~gg~eN~~~arkyy~~alkl----~~~~~ral~GI~l  233 (289)
T KOG3060|consen  185 PFNPL--YFQRLAEVLYTQGGAENLELARKYYERALKL----NPKNLRALFGIYL  233 (289)
T ss_pred             CCcHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----ChHhHHHHHHHHH
Confidence            88875  4667788777665   566788888888888    5555555444433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=1.6e-11  Score=107.22  Aligned_cols=176  Identities=20%  Similarity=0.218  Sum_probs=161.4

Q ss_pred             CCChhHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           29 KLSPGVTKMLGE-ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        29 ~~~~~~~~~~~~-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      .+.++.-.++.+ ..+.+..|+.+-|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+...+-.
T Consensus        46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR  125 (289)
T KOG3060|consen   46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR  125 (289)
T ss_pred             ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence            355666666654 5667889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG---  184 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---  184 (687)
                      .-.+...+|+.-+|++.+...++..+.|.++|..++.+|...|+|++|.-++++++=+.|.++-.+..+|.+++-+|   
T Consensus       126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999998877   


Q ss_pred             ChHHHHHHHHHHHHhCCCCC
Q 005632          185 QTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~p~~~  204 (687)
                      ++.-|.++|.++++++|.+.
T Consensus       206 N~~~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  206 NLELARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHHHHHHHHhChHhH
Confidence            46789999999999999654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.47  E-value=1.5e-12  Score=110.78  Aligned_cols=116  Identities=19%  Similarity=0.266  Sum_probs=69.7

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632           56 LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD  135 (687)
Q Consensus        56 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  135 (687)
                      .|++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45555556666555566666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632          136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD  171 (687)
Q Consensus       136 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  171 (687)
                      +..++.+|.++...|++++|+..++++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            666666666666666666666666666666555543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.46  E-value=1.6e-11  Score=129.91  Aligned_cols=138  Identities=15%  Similarity=0.095  Sum_probs=80.9

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      ..|.++++++.+|.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++..+++.+
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      |.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++..
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            5555555555555555555555555555555555555555555555555555555554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.46  E-value=7.1e-12  Score=132.56  Aligned_cols=147  Identities=10%  Similarity=-0.032  Sum_probs=137.5

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632           91 YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus        91 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      ........|.+++++..||.+....|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~  154 (694)
T PRK15179         75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA  154 (694)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence            33344557889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC
Q 005632          171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG  239 (687)
Q Consensus       171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  239 (687)
                      .+++.+|.++...|++++|+..|++++..+|++..  ++..+|.++...|+.++|...|++++...++.
T Consensus       155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~--~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFEN--GYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999998887775  78999999999999999999999999985533

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.46  E-value=1.2e-12  Score=121.49  Aligned_cols=289  Identities=14%  Similarity=0.134  Sum_probs=206.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Q 005632           73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISLRIHL  142 (687)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~l  142 (687)
                      .-|.-+++.|+....+.+|+.+++...++.    .+|..||..|+.+++|++|+++-..=+.+      .-......-++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            346778899999999999999998876654    45778899999999999999876543322      11233456678


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPD------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL  216 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~  216 (687)
                      |.++-..|.|++|+.++.+-+.+...      ...+++++|.+|...|+.-.-.         .|.+..  ....     
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pee~g--~f~~-----  165 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APEEKG--AFNA-----  165 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------Chhhcc--cccH-----
Confidence            89999999999999988887765322      3467888999988887643211         121111  0000     


Q ss_pred             HHcchHHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc-----hhhHHHHHHHHHHH
Q 005632          217 MENNAYEKTLQHIEHAQIVRFS--GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-----IDHADLITEVADTL  289 (687)
Q Consensus       217 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~  289 (687)
                      .-...++.|.++|..-+++...  +......++-++|..|+-+|+|+.|+..-+.-+....     .....++.++|.++
T Consensus       166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h  245 (639)
T KOG1130|consen  166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH  245 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence            0112345566666655554211  1122345677889999999999999988776433211     12456788999999


Q ss_pred             HhcCChHHHHHHHHHhhhc----c-CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC------CCHHHHHHHHHHH
Q 005632          290 MSLGHSNSALKYYHFLETN----A-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE------DNIDARLTLASLL  358 (687)
Q Consensus       290 ~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~  358 (687)
                      .-.|+++.|+++|+..+..    . ....+...+.+|..|.-..++++|+.++.+-+.+..      ....+.+.||..+
T Consensus       246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF  325 (639)
T ss_pred             hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999999999999975543    1 234677889999999999999999999998877643      3467889999999


Q ss_pred             HHcCCHHHHHHhcCCCCcC
Q 005632          359 LEEAKEEEAITLLSPPKDL  377 (687)
Q Consensus       359 ~~~g~~~~A~~~~~~a~~~  377 (687)
                      ...|..++|+.+.+..++.
T Consensus       326 ~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  326 NALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HhhhhHHHHHHHHHHHHHH
Confidence            9999999999988866554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.45  E-value=5.2e-12  Score=107.39  Aligned_cols=117  Identities=16%  Similarity=0.189  Sum_probs=110.7

Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632           89 DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus        89 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                      ..+++++..+|++......+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          169 NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       169 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      ++..++.+|.++...|++++|+..++++++.+|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            9999999999999999999999999999999998875

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=2.5e-12  Score=115.73  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..+-.+|..++..++|.+|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            44455667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE  153 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  153 (687)
                      .+|++++|++.|+++++++|++..+...|..+-...++..
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            7777777777777777777777766666655555544433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.42  E-value=9.6e-12  Score=124.42  Aligned_cols=226  Identities=14%  Similarity=0.109  Sum_probs=177.1

Q ss_pred             CCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHH
Q 005632           27 KNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK  106 (687)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  106 (687)
                      ...+||-..--...|..++..|-...|+.+|++.        ..|-....||...|+..+|.....+-++ .|+++..|.
T Consensus       391 a~~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc  461 (777)
T KOG1128|consen  391 APHLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYC  461 (777)
T ss_pred             cCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHH
Confidence            3556776666667788888888888888888764        5666677888888888888888888887 666677777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005632          107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT  186 (687)
Q Consensus       107 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~  186 (687)
                      .+|++.....-|++|.++.+..      +..+...+|......++|.++...++..++++|-....|+.+|.+..+.+++
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence            7777766655555555555443      3345666777777788888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHH
Q 005632          187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL  266 (687)
Q Consensus       187 ~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  266 (687)
                      ..|...|..++...|++..  +|++++..|...++-.+|...++++++.    +..++.+|.+.-.+....|.+++|+..
T Consensus       536 q~av~aF~rcvtL~Pd~~e--aWnNls~ayi~~~~k~ra~~~l~EAlKc----n~~~w~iWENymlvsvdvge~eda~~A  609 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLEPDNAE--AWNNLSTAYIRLKKKKRAFRKLKEALKC----NYQHWQIWENYMLVSVDVGEFEDAIKA  609 (777)
T ss_pred             HHHHHHHHHHhhcCCCchh--hhhhhhHHHHHHhhhHHHHHHHHHHhhc----CCCCCeeeechhhhhhhcccHHHHHHH
Confidence            8888888888888888876  7888888888888888888888888887    666777777777788888888888888


Q ss_pred             HHHHhhh
Q 005632          267 FADLQWK  273 (687)
Q Consensus       267 ~~~~~~~  273 (687)
                      +.+.+..
T Consensus       610 ~~rll~~  616 (777)
T KOG1128|consen  610 YHRLLDL  616 (777)
T ss_pred             HHHHHHh
Confidence            8887543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.39  E-value=2.2e-10  Score=110.12  Aligned_cols=153  Identities=12%  Similarity=0.090  Sum_probs=130.6

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      |....+++..+..++..|++++|+..++..+...|+++..+...+.+++..|+..+|.+.+++++..+|+.+..+.++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            67778888888888889999999999988888888888888888999999999999999999999988888888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632          145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK  224 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~  224 (687)
                      ++...|++.+|+..++..+..+|+++..|..|+..|..+|+..++..                   ..+..+...|++++
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-------------------A~AE~~~~~G~~~~  443 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-------------------ARAEGYALAGRLEQ  443 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-------------------HHHHHHHhCCCHHH
Confidence            99999999999999998888888888889888888888887766543                   45566777788888


Q ss_pred             HHHHHHHHHHHh
Q 005632          225 TLQHIEHAQIVR  236 (687)
Q Consensus       225 A~~~~~~~~~~~  236 (687)
                      |+..+..+.+..
T Consensus       444 A~~~l~~A~~~~  455 (484)
T COG4783         444 AIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHHhc
Confidence            888888887774

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.39  E-value=2.2e-11  Score=100.44  Aligned_cols=102  Identities=10%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      ++.-+..+.+|..++..|++++|...|+-+...+|.+...|+.||.++..+|++++|+..|.+++.++|+++..++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Q 005632          145 FYVEIGDYEKAAESYEQIQKLF  166 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~~  166 (687)
                      +++..|+.+.|.+.|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            5555555555555555555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.38  E-value=1.8e-11  Score=100.99  Aligned_cols=102  Identities=13%  Similarity=0.035  Sum_probs=62.9

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      +.....++..|..++..|++++|...|+-+...+|.++..|+.||.++..+|++.+|+..|.+++.++|+++..++.+|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            34455555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAE  132 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~  132 (687)
                      |++..|+.+.|...|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            6666666666666666665544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.38  E-value=3.3e-12  Score=121.28  Aligned_cols=160  Identities=23%  Similarity=0.185  Sum_probs=83.5

Q ss_pred             HHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632          211 LLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM  290 (687)
Q Consensus       211 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  290 (687)
                      ..|.++...|++++|++.+.+.         ...+.......++...++++.|...++.+...+. +..-.....+++.+
T Consensus       107 ~~A~i~~~~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e-D~~l~qLa~awv~l  176 (290)
T PF04733_consen  107 LAATILFHEGDYEEALKLLHKG---------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE-DSILTQLAEAWVNL  176 (290)
T ss_dssp             HHHHHHCCCCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            3444555555555555544331         2233344445555556666666665555544332 23333333333333


Q ss_pred             hcC--ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-HHH
Q 005632          291 SLG--HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKE-EEA  367 (687)
Q Consensus       291 ~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A  367 (687)
                      ..|  .+.+|.-+|+++... .+..+.++..++.++..+|++++|...+++++..+|++++++.+++.+....|+. +.+
T Consensus       177 ~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  177 ATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             HHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             HhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence            333  466666666665543 4455666666666666666666666666666666666666666666666666665 445


Q ss_pred             HHhcCCCCcCCccc
Q 005632          368 ITLLSPPKDLDSLD  381 (687)
Q Consensus       368 ~~~~~~a~~~~~~~  381 (687)
                      .+++.++....|..
T Consensus       256 ~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  256 ERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHCHHHTTTS
T ss_pred             HHHHHHHHHhCCCC
Confidence            55666555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.37  E-value=3.7e-10  Score=113.34  Aligned_cols=295  Identities=18%  Similarity=0.151  Sum_probs=227.8

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      |........++..+...|-...|+..|++.        ..|.....||...|+..+|.....+-++ .|+++..|..+|+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD  465 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence            334556788999999999999999999874        5688889999999999999999999988 7778888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632          145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK  224 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~  224 (687)
                      +.....-|++|.++.+..      +..+...+|......++|.++.+.++..++++|-...  .|+.+|.+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--TWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--HHHhccHHHHHHhhhHH
Confidence            887777677777766553      3457778888888899999999999999999999886  89999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632          225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF  304 (687)
Q Consensus       225 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  304 (687)
                      |.+.|..++..    .|.....|.+++..|.+.++-.+|...++++++-+. .+..+|.+...+....|.+++|++.+.+
T Consensus       538 av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  538 AVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             HHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            99999999999    999999999999999999999999999999998774 5899999999999999999999999999


Q ss_pred             hhhcc-CCCcHHHHHHHHHHHHHh-----hcHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHH-----HHcCCHHHHH
Q 005632          305 LETNA-GTDNGYLYLKLAECYLSL-----KERAHAIM-----FFYKALDRFEDNIDARLTLASLL-----LEEAKEEEAI  368 (687)
Q Consensus       305 ~~~~~-~~~~~~~~~~la~~~~~~-----g~~~~A~~-----~~~~al~~~p~~~~~~~~la~~~-----~~~g~~~~A~  368 (687)
                      ..... ...++.....+.......     ++-..+..     .+-+.+..--+.+..+...+..+     .+.+..++|.
T Consensus       613 ll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~l~~~~~~ek~~~~eka~  692 (777)
T KOG1128|consen  613 LLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYALLYGNGSSEKLDENEKAY  692 (777)
T ss_pred             HHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhhhccccchhcccccHHHH
Confidence            87652 122344433333322221     22222222     22233333334566665555422     1234455666


Q ss_pred             HhcCCCCcCCccc
Q 005632          369 TLLSPPKDLDSLD  381 (687)
Q Consensus       369 ~~~~~a~~~~~~~  381 (687)
                      +..++........
T Consensus       693 ~~l~k~~~~~s~~  705 (777)
T KOG1128|consen  693 RALSKAYKCDTGS  705 (777)
T ss_pred             hhhhhCccccccc
Confidence            6666655554433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.37  E-value=1.4e-11  Score=117.04  Aligned_cols=133  Identities=18%  Similarity=0.196  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhCchhhHHHHHHHHH
Q 005632          210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG--NMEKAEILFADLQWKNAIDHADLITEVAD  287 (687)
Q Consensus       210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~la~  287 (687)
                      .....++...++++.|.+.++.+.+.    +++...+....+++.+..|  .+.+|..+|+++....+. .+..+..++.
T Consensus       135 al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~-t~~~lng~A~  209 (290)
T PF04733_consen  135 ALAVQILLKMNRPDLAEKELKNMQQI----DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS-TPKLLNGLAV  209 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC-CHHHHHHHHH
Confidence            34444555555555555555444433    3333333334444444433  355566666665444332 5555666666


Q ss_pred             HHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHhcCCCH
Q 005632          288 TLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER-AHAIMFFYKALDRFEDNI  348 (687)
Q Consensus       288 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~  348 (687)
                      ++...|++++|...+++++.. +|.++.++.+++.+....|+. +.+.+++.++...+|+++
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEK-DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             HHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            666666666666666666554 566666666666666666665 445555555555666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=1.9e-11  Score=110.15  Aligned_cols=112  Identities=21%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      +-.-|.-++..++|.+|+..|.+|+.++|.++..|.+.|.+|.++|.++.|++.++.++.++|....+|..+|.+|..+|
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            33344444455555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      ++.+|++.|+++++++|++.....+|..+-..
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            55555555555555555555444444433333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.33  E-value=9.7e-10  Score=105.80  Aligned_cols=153  Identities=22%  Similarity=0.190  Sum_probs=130.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ  178 (687)
Q Consensus        99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  178 (687)
                      |....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|.+.+++++.++|+.+....++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            67788888999999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632          179 LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG  258 (687)
Q Consensus       179 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  258 (687)
                      .+.+.|++.+|+..++..+..+|+++.  .|..++..|..+|+..++....                     ++.+...|
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~--~w~~LAqay~~~g~~~~a~~A~---------------------AE~~~~~G  439 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQAYAELGNRAEALLAR---------------------AEGYALAG  439 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHhCchHHHHHHH---------------------HHHHHhCC
Confidence            999999999999999999999999887  6888999998888877765544                     34455578


Q ss_pred             CHHHHHHHHHHHhhhC
Q 005632          259 NMEKAEILFADLQWKN  274 (687)
Q Consensus       259 ~~~~A~~~~~~~~~~~  274 (687)
                      ++++|+..+..+.+..
T Consensus       440 ~~~~A~~~l~~A~~~~  455 (484)
T COG4783         440 RLEQAIIFLMRASQQV  455 (484)
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            8888888888776554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.30  E-value=6.3e-11  Score=117.21  Aligned_cols=114  Identities=19%  Similarity=0.207  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      .++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++...
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            36677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632          116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      |++++|+..|++++.++|+++.+...++.+....
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            8888888888888888888877777666654443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.30  E-value=8.4e-10  Score=102.38  Aligned_cols=184  Identities=14%  Similarity=0.077  Sum_probs=124.5

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET---YNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALW  105 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  105 (687)
                      .+....+..|..++..|+|++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++..|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            466667888888888888888888888888888876544   4788888888888888888888888887765   3556


Q ss_pred             HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632          106 KQLLTFAVQKG---------------D---TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP  167 (687)
Q Consensus       106 ~~la~~~~~~g---------------~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  167 (687)
                      +.+|.++...+               +   ..+|+..|++.++..|++.-+              .+|...+..+-.   
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~---  172 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD---  172 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence            77776654433               1   245667777777777766431              111111111100   


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632          168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQHIEHA  232 (687)
Q Consensus       168 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~  232 (687)
                      .-..--+..|..|.+.|.+..|+.-++.+++..|+.+.. .++..++..|...|..++|..+....
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            011223366777888888888888888888887776542 46777888888888888887766543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.25  E-value=7.6e-10  Score=100.42  Aligned_cols=176  Identities=16%  Similarity=0.167  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---HHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWK  106 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~  106 (687)
                      +...++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..|++++|+..+++.+...|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            56778899999999999999999999999988763   56889999999999999999999999999888754   5677


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632          107 QLLTFAVQKG-----------DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT  175 (687)
Q Consensus       107 ~la~~~~~~g-----------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  175 (687)
                      .+|.+++...           ...+|+..|+..+...|++..+-              +|...+..+-.   .-..--+.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~~e~~  146 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAEHELY  146 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHHHHHH
Confidence            7777765542           23466666777776666654221              11111100000   00112234


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHcchHHHH
Q 005632          176 GAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKT  225 (687)
Q Consensus       176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~la~~~~~~~~~~~A  225 (687)
                      +|..|.+.|.+..|+..++.+++..|+.... .++..++..+...|..+.|
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            5666777777777777777777776665432 3556666777777766643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=5.2e-07  Score=92.02  Aligned_cols=331  Identities=15%  Similarity=0.171  Sum_probs=199.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632           40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA  119 (687)
Q Consensus        40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  119 (687)
                      -|......|..++|..+|.+.-.        +-.+-..|...|.+++|.+..+.--.+  .-...|+..|.-+...++.+
T Consensus       806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~  875 (1416)
T KOG3617|consen  806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIE  875 (1416)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHH
Confidence            36667788888888888887643        334556677788888887765432111  12345778888888888888


Q ss_pred             HHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          120 QAMYYIRQA----------IRAEP----------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       120 ~A~~~~~~a----------~~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      .|+++|+++          +..+|          .++..|...|..+...|+.+.|+.+|..+-        -|+.+.++
T Consensus       876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI  947 (1416)
T KOG3617|consen  876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRI  947 (1416)
T ss_pred             HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheee
Confidence            888888875          22233          234456667777777788888887777653        25566667


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc-----cCCCchHHHHHHHHHHH
Q 005632          180 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF-----SGKELPLKLKVKAGICY  254 (687)
Q Consensus       180 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~  254 (687)
                      ..-+|+.++|-.+.++.     .+.  .+.+.+|..|...|++.+|+.+|.++.....     ..+....    .+..+.
T Consensus       948 ~C~qGk~~kAa~iA~es-----gd~--AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d----~L~nla 1016 (1416)
T KOG3617|consen  948 KCIQGKTDKAARIAEES-----GDK--AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD----RLANLA 1016 (1416)
T ss_pred             EeeccCchHHHHHHHhc-----ccH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----HHHHHH
Confidence            77777777776665542     222  2678899999999999999988887654310     0011111    111111


Q ss_pred             HHc--CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHH----------hhhccCCCcHHHHHHHHH
Q 005632          255 LRL--GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF----------LETNAGTDNGYLYLKLAE  322 (687)
Q Consensus       255 ~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------~~~~~~~~~~~~~~~la~  322 (687)
                      ...  .+.-.|..+|+..-        .....-..+|.+.|.+.+|+++.=+          +.......+|.++..-+.
T Consensus      1017 l~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELG--------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred             hhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            111  22333444444421        0111223445555665555544321          112234558888888999


Q ss_pred             HHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHH
Q 005632          323 CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK-EEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLC  401 (687)
Q Consensus       323 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la  401 (687)
                      .+....+|++|..++-.+-+..       -.+..|..+.=. .++-.+.+.-..+..|...         ...+++-.+|
T Consensus      1089 FF~~~~qyekAV~lL~~ar~~~-------~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~---------~R~~vLeqva 1152 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFS-------GALQLCKNRNVRVTEEFAELMTPTKDDMPNEQ---------ERKQVLEQVA 1152 (1416)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHH-------HHHHHHhcCCCchhHHHHHhcCcCcCCCccHH---------HHHHHHHHHH
Confidence            9999999999998877664321       112222221111 2333334444443333332         2457899999


Q ss_pred             HHHHHcCCchHHHHHHHHHHHH
Q 005632          402 HIYRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       402 ~~~~~~g~~~~A~~~~~~~~~~  423 (687)
                      .+..++|.|..|-+-|.+.=.+
T Consensus      1153 e~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred             HHHHhccchHHHHHHHhhhhhH
Confidence            9999999999998888776544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.24  E-value=9.7e-07  Score=91.41  Aligned_cols=131  Identities=21%  Similarity=0.187  Sum_probs=92.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      ..-....+++.+|+..+.+.++..|+.+-+....|.++.++|..++|..+++..-...+++...+..+-.+|..+|++++
T Consensus        16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence            44456677778888888888887887777777777777777777777777766666666667777777777777777777


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA  172 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  172 (687)
                      |..+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|.++..
T Consensus        96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy  146 (932)
T KOG2053|consen   96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY  146 (932)
T ss_pred             HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence            77777777777776 6666666667777666665555555555556665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.23  E-value=3.6e-09  Score=98.19  Aligned_cols=185  Identities=12%  Similarity=0.027  Sum_probs=134.9

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL---WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRI  140 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~  140 (687)
                      .+..++..|..++..|++++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            56677788888888888888888888888888877654   3778888888888888888888888887766   35677


Q ss_pred             HHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632          141 HLASFYVEIG---------------D---YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS  202 (687)
Q Consensus       141 ~la~~~~~~g---------------~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  202 (687)
                      .+|.++...+               +   ..+|+..|++.++..|++.-+              .+|...+..+-..-  
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~~l--  174 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKDRL--  174 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHHHH--
Confidence            7777654433               1   246777788888888876432              11211111111110  


Q ss_pred             CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          203 DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       203 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                         ..--..+|..|.+.|.|..|+.-++.+++.+|. .+....++..++..|...|..++|......+.
T Consensus       175 ---a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~-t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        175 ---AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD-TQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             ---HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence               012337899999999999999999999998654 45677899999999999999999998877654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.21  E-value=3.8e-10  Score=111.75  Aligned_cols=112  Identities=18%  Similarity=0.210  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      +...|..++..|++++|+..|.+++.++|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++...|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            44556667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      ++++|+..|+++++++|+++.+...++.+...
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            77777777777777777777666666555433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.18  E-value=3.1e-09  Score=96.40  Aligned_cols=179  Identities=15%  Similarity=0.122  Sum_probs=118.7

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRI  140 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~  140 (687)
                      .+..++..|..++..|++.+|+..|++++...|..   +.+.+.+|.+++..|++++|+..+++.+...|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            45677888888888888888888888888776654   46677888888888888888888888888877764   5677


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHH
Q 005632          141 HLASFYVEIG-----------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI  209 (687)
Q Consensus       141 ~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  209 (687)
                      .+|.++....           ...+|+..|+..+...|++..+-              +|...+..+-..-     ..--
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~l-----a~~e  144 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNRL-----AEHE  144 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHHH-----HHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHHH-----HHHH
Confidence            7777665432           23466666666666666654221              1111111111000     0123


Q ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHH
Q 005632          210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI  265 (687)
Q Consensus       210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  265 (687)
                      ..+|..|.+.|.+..|+..++.+++.+|. .+....++..++..+..+|..+.|..
T Consensus       145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~-t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  145 LYIARFYYKRGKYKAAIIRFQYVIENYPD-TPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHHCTT-HHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhCChHHHHH
Confidence            47899999999999999999999999553 34456789999999999999985543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.1e-09  Score=99.89  Aligned_cols=123  Identities=20%  Similarity=0.173  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 005632           84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESYE  160 (687)
Q Consensus        84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~  160 (687)
                      .+.-+.-++.-+..+|++.+.|..||.+|+..|++..|...|.+++++.|++++.+..+|.++..+.+   ..++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            45556667777888999999999999999999999999999999999999999999999988876543   578889999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH
Q 005632          161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL  206 (687)
Q Consensus       161 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  206 (687)
                      +++..+|.++.+.+.||..++..|+|.+|...++.+++..|.+...
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            9999999999999999999999999999999999999988877653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.14  E-value=1.3e-09  Score=90.38  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQL  108 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l  108 (687)
                      ..++..|..+...|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|+.++..+|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            345666666667777777777777776666654   3566666666666666666666666666665553   4556666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISL  138 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  138 (687)
                      |.++...|++++|+..+++++...|++..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            666666666666666666666666665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.4e-09  Score=96.76  Aligned_cols=136  Identities=15%  Similarity=0.159  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHH
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG---QTARSIGIL  193 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~  193 (687)
                      ..+.-+.-++.-+..+|++.+.|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++..+.   ...++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            35666777888889999999999999999999999999999999999999999999999999887654   467889999


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Q 005632          194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICY  254 (687)
Q Consensus       194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  254 (687)
                      ++++..+|.+..  +.+.+|..++..|+|.+|...++..+...+.+.+....+-..+....
T Consensus       217 ~~al~~D~~~ir--al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~  275 (287)
T COG4235         217 RQALALDPANIR--ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARAL  275 (287)
T ss_pred             HHHHhcCCccHH--HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence            999999999886  78899999999999999999999999997766666555544444433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.13  E-value=3.7e-09  Score=90.43  Aligned_cols=129  Identities=18%  Similarity=0.184  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQ  107 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  107 (687)
                      ....|..+...+..++...+...++.++..+|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+.+.
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            4456666777777888888888888888888876   4567778888888888888888888888766544   345677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ  163 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  163 (687)
                      +|.++...|++++|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            788888888888888888652 3334456677778888888888888888887763

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.12  E-value=4e-09  Score=108.60  Aligned_cols=121  Identities=9%  Similarity=-0.031  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Q 005632           84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK--------GDTAQAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYE  153 (687)
Q Consensus        84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~  153 (687)
                      ...|+.+|+++++++|++..++..++.++...        ++...+.....+++..  +|.++.++..+|..+...|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            33444444444444444444444444333221        1223444444454442  4555566666666666666666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       154 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      +|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus       438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            66666666666666 3566666666666666666666666666666666664

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.11  E-value=2.2e-09  Score=88.99  Aligned_cols=103  Identities=22%  Similarity=0.233  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHL  142 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l  142 (687)
                      +.++.+|..+...|++++|+..|.+++...|++   +.+++.+|.++...|++++|+..|++++..+|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            455566666666666666666666666555544   3455556666666666666666666666655543   3455566


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVD  171 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~  171 (687)
                      |.++...|++++|+..+.++++..|++..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            66666666666666666666666665544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.10  E-value=9.3e-08  Score=88.23  Aligned_cols=309  Identities=17%  Similarity=0.132  Sum_probs=184.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE---TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      ...+..|..++...++++|+..+.+.+..-.+...   .+-.+..+...+|.|++++.+---.+.               
T Consensus         7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~---------------   71 (518)
T KOG1941|consen    7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID---------------   71 (518)
T ss_pred             HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH---------------
Confidence            34556666777777777777777766654332221   222333444445555444433221111               


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcC
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-----DATKTGAQLFLKCG  184 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~la~~~~~~g  184 (687)
                                     -+.+.+.  ...+++.+++..+....++.+++.+-...+.+....+     .+...++..+..++
T Consensus        72 ---------------~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls  136 (518)
T KOG1941|consen   72 ---------------TARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS  136 (518)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH
Confidence                           1111110  0124566666666666666777666666665432222     45556777777777


Q ss_pred             ChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC------CchHHHHHHHHHHH
Q 005632          185 QTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK------ELPLKLKVKAGICY  254 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~  254 (687)
                      .++++++.|+.+++....+.+    ..++..+|.++....++++|.-+..++.++...-.      .....+++.++..+
T Consensus       137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal  216 (518)
T KOG1941|consen  137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL  216 (518)
T ss_pred             HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence            777777777777766433322    24566778888888888888877777776632111      12234566777777


Q ss_pred             HHcCCHHHHHHHHHHHhhh-----CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHH
Q 005632          255 LRLGNMEKAEILFADLQWK-----NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKLAECY  324 (687)
Q Consensus       255 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~  324 (687)
                      ..+|....|.++.+++.+.     +..........+|++|...|+.+.|..-|+.+....     .-....++...|.++
T Consensus       217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~  296 (518)
T KOG1941|consen  217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCL  296 (518)
T ss_pred             HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            8888888888877775332     222355566778888888888888888888776541     112345566666666


Q ss_pred             HHhhcHHH-----HHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCC
Q 005632          325 LSLKERAH-----AIMFFYKALDRFEDN------IDARLTLASLLLEEAKEEEAITLLSP  373 (687)
Q Consensus       325 ~~~g~~~~-----A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~  373 (687)
                      ....-..+     |+++-++++++...-      ...+..++.+|..+|.-++-...+..
T Consensus       297 ~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r  356 (518)
T KOG1941|consen  297 ETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR  356 (518)
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            65544444     777777777765421      34567788888888776665554443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.08  E-value=3.3e-05  Score=80.53  Aligned_cols=226  Identities=13%  Similarity=0.031  Sum_probs=141.4

Q ss_pred             HHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632           79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES  158 (687)
Q Consensus        79 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  158 (687)
                      ...+++.+|+....+.++..|+...+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|+.++|..+
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence            35577778888888888888887777777777888888888888777766666677777777777888888888888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch---------HHHHHHHH
Q 005632          159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA---------YEKTLQHI  229 (687)
Q Consensus       159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~---------~~~A~~~~  229 (687)
                      |+++...+|+ .+....+-.+|.+.+.|.+-.+.--++.+..|..+-. .|..+..+......         ..-|....
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy-fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY-FWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch-HHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            8888888887 6667777777777777776666655566666766542 34433333332211         12355555


Q ss_pred             HHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH-HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          230 EHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD-LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      ++.+..- + .-....-....-.++..+|++++|...+.. ..+..++.+..........+...+++.+-.++..+++..
T Consensus       178 ~~~l~~~-g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  178 QKLLEKK-G-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHhccC-C-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            5555541 1 111111122233445566777777777733 333333333444444555666666666666666666655

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.08  E-value=2.4e-08  Score=85.29  Aligned_cols=221  Identities=14%  Similarity=0.063  Sum_probs=144.5

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      .+..++..|..|-..|-+.-|.-.|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|...-+..+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            45677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE-EYLKVHPSDADLSVIDLLVAILMENNAYEKT  225 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A  225 (687)
                      .--|++.-|.+.+.+..+.+|++|---..+-. -...-++.+|...+. ++...+.+.-   -|+ +...|...=..+  
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tnL~qR~~~~d~e~W---G~~-iV~~yLgkiS~e--  216 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTNLKQRAEKSDKEQW---GWN-IVEFYLGKISEE--  216 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHHHHHHHHhccHhhh---hHH-HHHHHHhhccHH--
Confidence            88888888888888888888888743222221 223345666665443 3333332221   122 222222111111  


Q ss_pred             HHHHHHHHHHhccC----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH---HHHHHHHHHHHhcCChH
Q 005632          226 LQHIEHAQIVRFSG----KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA---DLITEVADTLMSLGHSN  296 (687)
Q Consensus       226 ~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~  296 (687)
                       ..++++... ..+    ...-.+.++.+|..+...|+.++|...|+-++..+.-+..   -+...++.+.....+..
T Consensus       217 -~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l~  292 (297)
T COG4785         217 -TLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDLA  292 (297)
T ss_pred             -HHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchhh
Confidence             112222221 111    1233567888888888999999998888887776553333   34445555554444433

>PRK11906 transcriptional regulator; Provisional

Probab=99.07  E-value=1.7e-08  Score=98.15  Aligned_cols=135  Identities=13%  Similarity=0.075  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHhcCC---HHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHc---------CChHHHHHHHHHHhccCCC
Q 005632           36 KMLGEASLQYAYGN---FEQAISLLKEVV---RLSPNLPETYNTLGLAHSAL---------GNHKSAFDFYVIAAHLSPK  100 (687)
Q Consensus        36 ~~~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~p~  100 (687)
                      .++.+|...+..+.   .+.|+.+|.+++   ..+|+.+.+|..++.|++..         .+..+|....+++++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            44555665554443   355666666666   66666666666666666543         1233555555666666666


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      ++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|.+.++++++++|...
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            6666666666666666666666666666666666666666666666666666666666666666666543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.07  E-value=3.2e-08  Score=95.18  Aligned_cols=125  Identities=14%  Similarity=0.221  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHc
Q 005632          151 DYEKAAESYEQIQKLFPD--N----VDATKTGAQLFLKC-GQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMEN  219 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~--~----~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~  219 (687)
                      ++++|+.+|++++.+.-.  +    ...+..+|.+|... |++++|+++|+++++.......    ...+..+|.++...
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l  168 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL  168 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence            555555555555443110  0    13344555555555 5666666666666554221111    12344566666666


Q ss_pred             chHHHHHHHHHHHHHHhccCCC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632          220 NAYEKTLQHIEHAQIVRFSGKE---LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       220 ~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  275 (687)
                      |+|++|+..|+++....-..+-   .....++..+.|++..|++..|...+++....+|
T Consensus       169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred             CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            6666666666666554111111   1112334555566666666666666666554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=9.9e-08  Score=84.60  Aligned_cols=256  Identities=16%  Similarity=0.167  Sum_probs=174.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632          110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       110 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A  189 (687)
                      +-++-.|+|..++...++.-... ...+....+.+.|..+|++...+......-   .....+...++.....-++.++-
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~   91 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI   91 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence            44556677777777666654433 566677777788888887766554443322   12234455555555555555555


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632          190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD  269 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  269 (687)
                      +..+.+.+..............-+.++...|++++|+........         .++...-..++.+..+++-|...+++
T Consensus        92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~---------lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN---------LEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444443322222222344566788888888888888776332         23444455677788888888888888


Q ss_pred             HhhhCchhhHHHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 005632          270 LQWKNAIDHADLITEVADTLMS----LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE  345 (687)
Q Consensus       270 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  345 (687)
                      +.+.+   +...+..+|..+..    .+++.+|.-+|+...+. .+..+.+....+.|+..+|++++|...++.++..++
T Consensus       163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            76553   34445555555543    34788999999998876 677889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHH-HhcCCCCcCCcccC
Q 005632          346 DNIDARLTLASLLLEEAKEEEAI-TLLSPPKDLDSLDM  382 (687)
Q Consensus       346 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~  382 (687)
                      ++++++.++..+-...|...++. +.+.+.....|..+
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            99999999999988999876654 45566666677654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.06  E-value=5.6e-09  Score=92.11  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=81.1

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHH
Q 005632           45 YAYGNFEQAISLLKEVVRLSPNL--PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTA  119 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~  119 (687)
                      +-.+.|..+...+...+..++.+  ...++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|+++
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~   89 (168)
T CHL00033         10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT   89 (168)
T ss_pred             ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence            34455667777776666555554  5677888888888888888888888888776553   357888888888888888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632          120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus       120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      +|+..+++++...|.....+..+|.++...|
T Consensus        90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         90 KALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            8888888888888888888888888877333

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.05  E-value=2.4e-08  Score=85.24  Aligned_cols=221  Identities=15%  Similarity=0.072  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632          102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL  181 (687)
Q Consensus       102 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  181 (687)
                      ...++..|..|-..|-+.-|.--|.+++.+.|+-++++..+|..+...|+++.|.+.|...++++|.+.-+..+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            44567778888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHH
Q 005632          182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME  261 (687)
Q Consensus       182 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (687)
                      .-|++.-|.+-+.+..+.+|+++-...|..+.   ...-++.+|...+.+-.+.    .....+-+...+. |...=..+
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~-yLgkiS~e  216 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEF-YLGKISEE  216 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHH-HHhhccHH
Confidence            99999999999999999999887533333222   3345677776665443332    1212222222111 11111122


Q ss_pred             HHHHHHHHHhhhC---chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC---CCcHHHHHHHHHHHHHhhcH
Q 005632          262 KAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG---TDNGYLYLKLAECYLSLKER  330 (687)
Q Consensus       262 ~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~  330 (687)
                      ...+........+   ...-.+.++.+|..+...|+.++|..+|+-++...-   -+.-.+.+.++.+.....+.
T Consensus       217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l  291 (297)
T COG4785         217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDL  291 (297)
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchh
Confidence            2222222211111   123567788999999999999999999987775521   12333445555555444433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.04  E-value=1.5e-07  Score=86.86  Aligned_cols=239  Identities=14%  Similarity=0.116  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 005632          104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDA  172 (687)
Q Consensus       104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~  172 (687)
                      ++.+++..+....++.+++.+-...+.+....     ..+...++..+..++.++++++.|+.+++....+      ..+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            34444444444444444444444433322111     1233344444444555555555555554442221      123


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC--cH------HHHHHHHHHHHHcchHHHHHHHHHHHHHHh--ccCCCc
Q 005632          173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDA--DL------SVIDLLVAILMENNAYEKTLQHIEHAQIVR--FSGKEL  242 (687)
Q Consensus       173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~  242 (687)
                      +..+|.++....++++|.-+..++.++..+..  ++      -+++.++..+..+|+.-.|.++.+++.++.  ..+.+.
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            44445555555555555554444444321110  00      123344444445555555555555444431  112222


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc-----hhhHHHHHHHHHHHHhcCCh-----HHHHHHHHHhhhccC--
Q 005632          243 PLKLKVKAGICYLRLGNMEKAEILFADLQWKNA-----IDHADLITEVADTLMSLGHS-----NSALKYYHFLETNAG--  310 (687)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~-----~~A~~~~~~~~~~~~--  310 (687)
                      .......+|.+|...|+.+.|..-|+.+.....     -....++...+.++....-.     =.|+++-+++++...  
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I  324 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI  324 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence            333344445555555555555555554432111     01222333333333322222     235555555554411  


Q ss_pred             ---CCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632          311 ---TDNGYLYLKLAECYLSLKERAHAIMFFYKALD  342 (687)
Q Consensus       311 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  342 (687)
                         -........++.+|..+|.-++-...+..+-+
T Consensus       325 G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~  359 (518)
T KOG1941|consen  325 GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE  359 (518)
T ss_pred             hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence               12345667788888888877776666666544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.03  E-value=1.4e-08  Score=104.77  Aligned_cols=144  Identities=20%  Similarity=0.168  Sum_probs=111.4

Q ss_pred             CCCCChhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--------ChHHHHHHHHHHh
Q 005632           27 KNKLSPGVTKMLGEASLQYAYGN---FEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--------NHKSAFDFYVIAA   95 (687)
Q Consensus        27 ~~~~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al   95 (687)
                      ..+.++++..++.+|..++..++   +..|+.+|+++++.+|+++.++..++.++....        +...+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            34456677778888888876655   778888888888888888888888887775542        2345555566655


Q ss_pred             cc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632           96 HL--SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD  171 (687)
Q Consensus        96 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  171 (687)
                      .+  +|.++.++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|++.|++++.++|.++.
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            53  666777888888888888888888888888888888 4778888888888888888888888888888888775

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.03  E-value=1.2e-06  Score=82.06  Aligned_cols=293  Identities=15%  Similarity=0.070  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-HHHHHHHHHH
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFA  112 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~  112 (687)
                      +.+..|.+....||-..|.+.-.+.-..-..  .+-++..-+....-.|+++.|.+-|+.++. +|..- -.+..|-.-.
T Consensus        86 qALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleA  164 (531)
T COG3898          86 QALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEA  164 (531)
T ss_pred             HHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHH
Confidence            4566688888889988888888887644333  344556667777888999999999988775 33321 2233333444


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCH---HH--HHHHHHHHHHcC
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL---FPDNV---DA--TKTGAQLFLKCG  184 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~---~~--~~~la~~~~~~g  184 (687)
                      ...|+.+.|..+-+.+....|.-+.++...-...+..|+++.|++..+.....   .++..   .+  +...+.. .-..
T Consensus       165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~lda  243 (531)
T COG3898         165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDA  243 (531)
T ss_pred             HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcC
Confidence            57788999999999999999988888888888888899999999888776543   22211   11  1122222 2234


Q ss_pred             ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH
Q 005632          185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE  264 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  264 (687)
                      +...|...-.++.++.|+...  .-..-+..++..|+..++-..++.+.+.    .|.+.     ++..|.....-+.++
T Consensus       244 dp~~Ar~~A~~a~KL~pdlvP--aav~AAralf~d~~~rKg~~ilE~aWK~----ePHP~-----ia~lY~~ar~gdta~  312 (531)
T COG3898         244 DPASARDDALEANKLAPDLVP--AAVVAARALFRDGNLRKGSKILETAWKA----EPHPD-----IALLYVRARSGDTAL  312 (531)
T ss_pred             ChHHHHHHHHHHhhcCCccch--HHHHHHHHHHhccchhhhhhHHHHHHhc----CCChH-----HHHHHHHhcCCCcHH
Confidence            678888888888888888776  4557788888999999999999988887    33332     233344333333444


Q ss_pred             HHHHHH--hhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh-hcHHHHHHHHHHHH
Q 005632          265 ILFADL--QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL-KERAHAIMFFYKAL  341 (687)
Q Consensus       265 ~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al  341 (687)
                      .-++++  +....+++.+....++..-+..|++..|..--+.+...  .....++..++.+-... |+-.+...++-+++
T Consensus       313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            444443  22223358888888999999999999988888777755  33455777788887766 99999999999988


Q ss_pred             Hh
Q 005632          342 DR  343 (687)
Q Consensus       342 ~~  343 (687)
                      +.
T Consensus       391 ~A  392 (531)
T COG3898         391 KA  392 (531)
T ss_pred             cC
Confidence            74

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.02  E-value=1.6e-08  Score=89.51  Aligned_cols=118  Identities=19%  Similarity=0.266  Sum_probs=87.1

Q ss_pred             CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      ..+.+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+++++...|.+...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            456677888888888888888888888888766543   45778888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                      |.++...|+...+...+..++.                    .+++|++.+++++..+|++
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            8888888876666555554432                    2566666777776666665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.02  E-value=1.2e-09  Score=83.36  Aligned_cols=81  Identities=20%  Similarity=0.308  Sum_probs=61.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632           47 YGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY  124 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  124 (687)
                      +|+|+.|+.+++++++.+|.  +...++.+|.|++..|++++|+..+++ ...+|.+....+.+|.++..+|++++|+.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57788888888888888774  455677778888888888888888877 667777777777778888888888888887


Q ss_pred             HHHH
Q 005632          125 IRQA  128 (687)
Q Consensus       125 ~~~a  128 (687)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.01  E-value=1.5e-09  Score=79.42  Aligned_cols=64  Identities=20%  Similarity=0.347  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAE  132 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~  132 (687)
                      ..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            333444444444444444444444444444444444444444444444 3444444444444433

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.00  E-value=1.4e-08  Score=89.89  Aligned_cols=95  Identities=18%  Similarity=0.306  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      ...++.+|..+...|++++|+.+|++++...|+.   +.++..+|.++...|++++|+..+.+++...|.+...+..+|.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3344555555555555555555555555544332   2345555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQA  128 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a  128 (687)
                      ++...|+...+...++.+
T Consensus       115 ~~~~~g~~~~a~~~~~~A  132 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEA  132 (172)
T ss_pred             HHHHcCChHhHhhCHHHH
Confidence            555555555544444433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.00  E-value=2.6e-08  Score=85.21  Aligned_cols=115  Identities=19%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             cCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHH
Q 005632           81 LGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEK  154 (687)
Q Consensus        81 ~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~  154 (687)
                      .++...+...++..+...|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+.+.++.++...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            444444444444444444444   2334444555555555555555555555444322   2234444555555555555


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632          155 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY  196 (687)
Q Consensus       155 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  196 (687)
                      |+..++. +...+-.+.++..+|.++...|++++|+..|+++
T Consensus       104 Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            5554433 1112222334444445555555555554444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.00  E-value=5.6e-09  Score=82.84  Aligned_cols=90  Identities=26%  Similarity=0.423  Sum_probs=34.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 005632           74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE  153 (687)
Q Consensus        74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~  153 (687)
                      +|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|+++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHHHHHHHH
Q 005632          154 KAAESYEQIQ  163 (687)
Q Consensus       154 ~A~~~~~~~~  163 (687)
                      .|...+.+++
T Consensus        86 ~a~~~~~~~~   95 (100)
T cd00189          86 EALEAYEKAL   95 (100)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.99  E-value=1.4e-09  Score=78.31  Aligned_cols=63  Identities=25%  Similarity=0.490  Sum_probs=35.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC
Q 005632           39 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD  101 (687)
Q Consensus        39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  101 (687)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555555555555555555555555555555555555555555555555555555555554

>PRK15331 chaperone protein SicA; Provisional

Probab=98.99  E-value=9.3e-09  Score=85.40  Aligned_cols=97  Identities=14%  Similarity=0.078  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      ....+..|..++..|++++|..+|+-+...+|.+++.+..||.|+..+++|++|+..|..+..++++++...+..|.|++
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l  116 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL  116 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIR  130 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~  130 (687)
                      ..|+...|..+|+.++.
T Consensus       117 ~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        117 LMRKAAKARQCFELVNE  133 (165)
T ss_pred             HhCCHHHHHHHHHHHHh
Confidence            55555555555555544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.98  E-value=1.4e-08  Score=89.48  Aligned_cols=122  Identities=16%  Similarity=0.117  Sum_probs=95.2

Q ss_pred             CChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 005632           82 GNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAA  156 (687)
Q Consensus        82 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~  156 (687)
                      ..+..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|++++|+
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~   92 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL   92 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            44566666666665555544  5667899999999999999999999999887653   458999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH-------HcCChH-------HHHHHHHHHHHhCCCC
Q 005632          157 ESYEQIQKLFPDNVDATKTGAQLFL-------KCGQTA-------RSIGILEEYLKVHPSD  203 (687)
Q Consensus       157 ~~~~~~~~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~~~~~~p~~  203 (687)
                      ..+++++.+.|.....+..+|.++.       ..|+++       +|+..+++++..+|.+
T Consensus        93 ~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         93 EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            9999999999999998888888888       566655       4444444555555544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=3.8e-06  Score=85.99  Aligned_cols=227  Identities=18%  Similarity=0.212  Sum_probs=119.6

Q ss_pred             HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------HHHHHhCCCCHHHHHHHHHHHH
Q 005632           80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI------------RQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        80 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      ..|+.+.|.+..+-.     .....|.++|.......+.+-|.-++            +++.+ +|+.  .-...|.+..
T Consensus       740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAvLAi  811 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAVLAI  811 (1416)
T ss_pred             EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHHHHH
Confidence            345666655544332     22345666666665555555444333            23322 2322  2233455666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHH
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ  227 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~  227 (687)
                      .+|..++|...|+++-..        -.+-.+|...|.+++|.++.+.--+++-.    ..+++.+.-+...++.+.|++
T Consensus       812 eLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lear~Di~~Ale  879 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEARRDIEAALE  879 (1416)
T ss_pred             HHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHhhccHHHHHH
Confidence            777778888888776543        24456677777777777766543222211    246677777777777777887


Q ss_pred             HHHHHHHH-------hccC---------CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHh
Q 005632          228 HIEHAQIV-------RFSG---------KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMS  291 (687)
Q Consensus       228 ~~~~~~~~-------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~  291 (687)
                      +|+++-..       ...+         ...+..+|.--|..+...|+.+.|+.+|..+.         -|+.+..+..-
T Consensus       880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~  950 (1416)
T KOG3617|consen  880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCI  950 (1416)
T ss_pred             HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEee
Confidence            77764211       0000         00111223333444444455555555554431         12333444444


Q ss_pred             cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005632          292 LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL  341 (687)
Q Consensus       292 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  341 (687)
                      +|+.++|-.+.+      ...+..+.+.+|+.|...|++.+|+.+|.++-
T Consensus       951 qGk~~kAa~iA~------esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  951 QGKTDKAARIAE------ESGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ccCchHHHHHHH------hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            555555544331      23445566677777777777777777776654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=3.9e-07  Score=80.89  Aligned_cols=256  Identities=14%  Similarity=0.136  Sum_probs=159.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      .+.++-.|+|..++..-.+.-... ...+....+...|+.+|.+..-+......-   .....+...++.....-++.++
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            667777888988888777664433 667777888888888888765554433221   1223444555555555555555


Q ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632          121 AMYYIRQAIRAE--PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       121 A~~~~~~a~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  198 (687)
                      -+.-..+.+...  ..+......-|.++...|++++|+......     .+.++...-..++.++.+++-|.+.++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            544444433322  222344555567777888888887777663     3445555556677777888888888887777


Q ss_pred             hCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC
Q 005632          199 VHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN  274 (687)
Q Consensus       199 ~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  274 (687)
                      .+.+.    .+..||..+..    .+.+.+|.-+|+..-+.    .+..+......+.+.+.+|++++|...++.++..+
T Consensus       166 ided~----tLtQLA~awv~la~ggek~qdAfyifeE~s~k----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  166 IDEDA----TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             cchHH----HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            66443    34445555443    24566777777776654    45556666677777777777777777777777776


Q ss_pred             chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcH
Q 005632          275 AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG  314 (687)
Q Consensus       275 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  314 (687)
                      +. +++.+.++..+-...|...++..-+-.-+...+|..+
T Consensus       238 ~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  238 AK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             CC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            64 6777777777777777666655544433333355554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.98  E-value=7.1e-09  Score=82.23  Aligned_cols=99  Identities=22%  Similarity=0.399  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      .++..|..++..|++++|+..++++++..|.++.++..+|.++...|++++|+.++++++...|.+...+..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 005632          116 GDTAQAMYYIRQAIRAEPK  134 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~  134 (687)
                      |++++|...+.+++..+|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988763

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.98  E-value=2.1e-08  Score=93.66  Aligned_cols=106  Identities=20%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---CHHHH
Q 005632           33 GVTKMLGEASLQ-YAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALW  105 (687)
Q Consensus        33 ~~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~  105 (687)
                      +....|..|..+ +..|+|++|+..|+..+..+|++   +.+++.+|.+|+..|++++|+..|++++...|+   .++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            457778888876 56789999999999999998886   578899999999999999999999998877766   46778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL  138 (687)
Q Consensus       106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  138 (687)
                      +.+|.++...|++++|...|+++++..|+...+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            888888888888888888888888888877654

>PRK15331 chaperone protein SicA; Provisional

Probab=98.98  E-value=1e-08  Score=85.22  Aligned_cols=107  Identities=10%  Similarity=0.060  Sum_probs=92.7

Q ss_pred             HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632           62 RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH  141 (687)
Q Consensus        62 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  141 (687)
                      .+.++.-+..+..|.-++..|++++|...|+-+...+|.+++.|..||.++..+++|++|+..|..+..++++++...+.
T Consensus        31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence            34455667788889999999999999999999888899999999999999999999999999999999998899989999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632          142 LASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      .|.|++..|+...|..+|..++. .|.+
T Consensus       111 agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            99999999999999999998888 3443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.97  E-value=3.4e-09  Score=77.52  Aligned_cols=67  Identities=33%  Similarity=0.591  Sum_probs=40.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 005632          101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-DYEKAAESYEQIQKLFP  167 (687)
Q Consensus       101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p  167 (687)
                      ++..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34555666666666666666666666666666666666666666666666 46666666666666554

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.95  E-value=8.4e-08  Score=93.42  Aligned_cols=170  Identities=12%  Similarity=0.046  Sum_probs=138.3

Q ss_pred             HHhCCCch---HHH----HHHHHHHHHcCC---hHHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHc---------CCH
Q 005632           61 VRLSPNLP---ETY----NTLGLAHSALGN---HKSAFDFYVIAA---HLSPKDSALWKQLLTFAVQK---------GDT  118 (687)
Q Consensus        61 l~~~p~~~---~~~----~~l~~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~  118 (687)
                      ....|.+.   ++|    +..|...+..+.   .+.|+.+|.+++   .++|....++..++.|++..         .+.
T Consensus       241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~  320 (458)
T PRK11906        241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA  320 (458)
T ss_pred             hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            34445555   444    677777766654   568999999999   99999999999999998754         245


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632          119 AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       119 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  198 (687)
                      .+|....+++++++|.|+.++..+|.++...++++.|...|++++.++|+...+++..|.+....|+.++|...++++++
T Consensus       321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHH
Q 005632          199 VHPSDADLSVIDLLVAILMENNAYEKTLQHIEH  231 (687)
Q Consensus       199 ~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  231 (687)
                      ++|......+.......|+ ....+.|+..|-+
T Consensus       401 LsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  432 (458)
T PRK11906        401 LEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYK  432 (458)
T ss_pred             cCchhhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence            9998765433322233443 4456677776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.94  E-value=5.3e-09  Score=75.31  Aligned_cols=64  Identities=22%  Similarity=0.338  Sum_probs=39.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632           73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI  136 (687)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  136 (687)
                      .+|..++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4556666666666666666666666666666666666666666666666666666666666553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.93  E-value=1.5e-09  Score=98.99  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=82.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH
Q 005632           39 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT  118 (687)
Q Consensus        39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  118 (687)
                      .+|+.|+.+|.|++|+.+|.+.+..+|.++..+.+.+.+|++...|..|...+..++.++.....+|...+..-..+|..
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            45777888888888888888888888888888888888888888888888888888887777777777777777788888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          119 AQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus       119 ~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      .+|..-++.++.+.|++.+..-.++.+
T Consensus       182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence            888888888888888766655444433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.92  E-value=4.4e-07  Score=97.90  Aligned_cols=221  Identities=13%  Similarity=0.075  Sum_probs=187.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCC--cHHHHHHHHHHHHHcchHHHHHHH
Q 005632          152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV-HPSDA--DLSVIDLLVAILMENNAYEKTLQH  228 (687)
Q Consensus       152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~--~~~~~~~la~~~~~~~~~~~A~~~  228 (687)
                      -.+..+-|++.+..+|+..-.|.......++.++.++|.+..++++.. ++...  ...+|..+-++...-|.-+...+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            344566788888889999999999999999999999999999999875 33322  224566666666667777888899


Q ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      |+++.+.     -....++..+.-+|...+++++|.++++.+++... .....|...+..++...+-++|..++.+++..
T Consensus      1520 FeRAcqy-----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1520 FERACQY-----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence            9999886     45667888899999999999999999999998877 58899999999999999999999999999876


Q ss_pred             cCCC--cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCc
Q 005632          309 AGTD--NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS  379 (687)
Q Consensus       309 ~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  379 (687)
                       -|.  +.......|.+-++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+-+..+|++++...-
T Consensus      1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence             444  7888888999999999999999999999999999999999999999999999999999999887654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.91  E-value=3.5e-07  Score=87.81  Aligned_cols=340  Identities=15%  Similarity=0.096  Sum_probs=220.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHh-ccCCC--------CHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA-HLSPK--------DSALW  105 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~--------~~~~~  105 (687)
                      .....+...++...+...+....+.++.+..+.+.+++..+..++..|++.+|.+.+...- ...|.        ....|
T Consensus       207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~  286 (696)
T KOG2471|consen  207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN  286 (696)
T ss_pred             hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee
Confidence            3344456667778888888888888888888889999999999999999999998875432 11222        22347


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632          106 KQLLTFAVQKGDTAQAMYYIRQAIRA---------EP---------KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP  167 (687)
Q Consensus       106 ~~la~~~~~~g~~~~A~~~~~~a~~~---------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  167 (687)
                      .++|.++++.|.|.-+..+|.+++..         .|         ...+..++.|..|...|++-.|.++|.++.....
T Consensus       287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            89999999999999999999999851         11         2346789999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC---hHHHHHHHHH--H--------------HHh--CCCCCc----HHHHHHHHHHHHHcchH
Q 005632          168 DNVDATKTGAQLFLKCGQ---TARSIGILEE--Y--------------LKV--HPSDAD----LSVIDLLVAILMENNAY  222 (687)
Q Consensus       168 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~--~--------------~~~--~p~~~~----~~~~~~la~~~~~~~~~  222 (687)
                      .+|..|..++.++....+   .++......+  .              ++.  .+..+.    +..-..++.++.+.+-+
T Consensus       367 ~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~  446 (696)
T KOG2471|consen  367 RNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALY  446 (696)
T ss_pred             cCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhh
Confidence            999999999998764321   1111111111  0              000  000000    00011122222211100


Q ss_pred             -----HHHHHHHHHHHH---H-------------------------hccCCCc--------hHHHHHHHHHHHHHcCCHH
Q 005632          223 -----EKTLQHIEHAQI---V-------------------------RFSGKEL--------PLKLKVKAGICYLRLGNME  261 (687)
Q Consensus       223 -----~~A~~~~~~~~~---~-------------------------~~~~~~~--------~~~~~~~l~~~~~~~~~~~  261 (687)
                           ..--..+.-+..   .                         .+++.|.        ...++...+.+-...|+.-
T Consensus       447 Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i  526 (696)
T KOG2471|consen  447 LLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPI  526 (696)
T ss_pred             cCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence                 000000000000   0                         0000111        1245677788888889988


Q ss_pred             HHHHHHHHHhhhCchhhHHHHHHHHHH-----HHhcCChHHHHHHHHHhh------hcc----------------CC---
Q 005632          262 KAEILFADLQWKNAIDHADLITEVADT-----LMSLGHSNSALKYYHFLE------TNA----------------GT---  311 (687)
Q Consensus       262 ~A~~~~~~~~~~~~~~~~~~~~~la~~-----~~~~g~~~~A~~~~~~~~------~~~----------------~~---  311 (687)
                      .|+..-++++...  +-..++..+|.+     +....+..+|...+.--.      ...                +|   
T Consensus       527 ~AL~~a~kLLq~~--~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~  604 (696)
T KOG2471|consen  527 KALSAATKLLQLA--DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTG  604 (696)
T ss_pred             hHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCC
Confidence            8888888887653  255555555444     456677777777665311      000                00   


Q ss_pred             ---C---------cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632          312 ---D---------NGYLYLKLAECYLSLKERAHAIMFFYKALDRFE--DNIDARLTLASLLLEEAKEEEAITLLSPPKD  376 (687)
Q Consensus       312 ---~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  376 (687)
                         .         ....++++|.++.-+|++++|..++..+..+-|  .++.+......+-..+|+...|...+++..-
T Consensus       605 r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~  683 (696)
T KOG2471|consen  605 RTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH  683 (696)
T ss_pred             CCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence               0         123578999999999999999999999998877  5567776666777889999999998886543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.91  E-value=4.7e-09  Score=80.04  Aligned_cols=78  Identities=31%  Similarity=0.447  Sum_probs=32.7

Q ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005632          116 GDTAQAMYYIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL  193 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  193 (687)
                      |+++.|+..++++++..|.  +...++.+|.+++..|++++|+..+++ .+.+|.++...+.+|.++..+|++++|+..+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3444444444444444442  222333344444444444444444444 3334444444444444444444444444444


Q ss_pred             H
Q 005632          194 E  194 (687)
Q Consensus       194 ~  194 (687)
                      +
T Consensus        82 ~   82 (84)
T PF12895_consen   82 E   82 (84)
T ss_dssp             H
T ss_pred             h
Confidence            3

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.89  E-value=6.5e-07  Score=80.15  Aligned_cols=163  Identities=16%  Similarity=0.217  Sum_probs=111.9

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH---H
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA---L  104 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~  104 (687)
                      ...+..++.+|...++.|+|++|+..|+.+...+|..   ..+...++.++++.+++++|+...++-+.+.|+++.   +
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            3456789999999999999999999999999888864   467888999999999999999999999999887653   4


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHH
Q 005632          105 WKQLLTFAVQK--------GDTAQAMYYIRQAIRAEPKDISL-----------------RIHLASFYVEIGDYEKAAESY  159 (687)
Q Consensus       105 ~~~la~~~~~~--------g~~~~A~~~~~~a~~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~~~  159 (687)
                      ++..|.+++..        .-..+|+..|+..+...|++.-+                 -...|..|.+.|.+..|+.-+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~  190 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF  190 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            55666665433        12456777778888888876422                 122445555555555555555


Q ss_pred             HHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHH
Q 005632          160 EQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGIL  193 (687)
Q Consensus       160 ~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~  193 (687)
                      +.+++..|+..   +++..+...|..+|-.++|...-
T Consensus       191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            55555544432   34445555555555555555443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.88  E-value=1.6e-06  Score=93.74  Aligned_cols=237  Identities=15%  Similarity=0.168  Sum_probs=162.6

Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 005632           84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKD----ISLRIHLASFYVEIGDYEKAAES  158 (687)
Q Consensus        84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~  158 (687)
                      -.+..+.|++.+..+|+..-.|..+.....+.++.++|....++++.. ++..    ...|..+-++...-|.-+.-.+.
T Consensus      1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred             CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence            344456667777777777777777777777777777787777777763 3322    23455555555555666666777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc
Q 005632          159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS  238 (687)
Q Consensus       159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  238 (687)
                      |+++.+.. +...++..|..+|...+++++|.++++.+++......  .+|..++..++++.+-+.|...+.++++..| 
T Consensus      1520 FeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP- 1595 (1710)
T KOG1070|consen 1520 FERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--KVWIMYADFLLRQNEAEAARELLKRALKSLP- 1595 (1710)
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh--hHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-
Confidence            77777654 2346677777788888888888888888777766433  3677788888888777788888888877744 


Q ss_pred             CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCCcHHHH
Q 005632          239 GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-GTDNGYLY  317 (687)
Q Consensus       239 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  317 (687)
                       ...........+.+.++.|+.+.+..+|+..+...|. ..+.|.-+.+.-...|+.+.+..+|++++... .+.....+
T Consensus      1596 -k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1596 -KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred             -hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH
Confidence             2345666667777777888888888888887777775 77788888888888888888888888877653 23344444


Q ss_pred             HHHHHHHHH
Q 005632          318 LKLAECYLS  326 (687)
Q Consensus       318 ~~la~~~~~  326 (687)
                      +..=.-|.+
T Consensus      1674 fKkwLeyEk 1682 (1710)
T KOG1070|consen 1674 FKKWLEYEK 1682 (1710)
T ss_pred             HHHHHHHHH
Confidence            444333443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.88  E-value=7.9e-06  Score=76.67  Aligned_cols=292  Identities=16%  Similarity=0.086  Sum_probs=216.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC
Q 005632           74 LGLAHSALGNHKSAFDFYVIAAHLSPKDS--ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYVEIG  150 (687)
Q Consensus        74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g  150 (687)
                      -|.+..-.||-..|.+.-.++-.+-..+.  -++..-+..-.-.|+++.|.+-|+.++. +|.. .-.+..|-.-....|
T Consensus        90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~G  168 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLG  168 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcc
Confidence            35566667899999998888875543333  3344447778889999999999999885 2321 111222333345789


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCcH-HHHHHHHH-HHHHcchHHHH
Q 005632          151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH---PSDADL-SVIDLLVA-ILMENNAYEKT  225 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~-~~~~~la~-~~~~~~~~~~A  225 (687)
                      ..+.|..+-+++....|.-+.++...-......|+++.|+++.+......   ++-.+. .+...-+. .-.-..+...|
T Consensus       169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A  248 (531)
T COG3898         169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA  248 (531)
T ss_pred             cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence            99999999999999999999999988889999999999999998766542   222110 01111111 11223567888


Q ss_pred             HHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 005632          226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFL  305 (687)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  305 (687)
                      ...-.++.++    .|.....-...+..+++.|+..++-.+++.+-+..|  ++.+    +..|....--+.++.-++++
T Consensus       249 r~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~i----a~lY~~ar~gdta~dRlkRa  318 (531)
T COG3898         249 RDDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDI----ALLYVRARSGDTALDRLKRA  318 (531)
T ss_pred             HHHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHH----HHHHHHhcCCCcHHHHHHHH
Confidence            8888899888    777777788889999999999999999999988777  4443    34444444444555556554


Q ss_pred             hhc--cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHhcCCCCcC
Q 005632          306 ETN--AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE-AKEEEAITLLSPPKDL  377 (687)
Q Consensus       306 ~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~  377 (687)
                      ...  ..|++.+..+..+..-+.-|++..|..--+.+....|. ..++..|+.+-... |+-.++...+.+++..
T Consensus       319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            332  37999999999999999999999999999999999986 45677788887765 9999999999888764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.87  E-value=8.2e-06  Score=77.76  Aligned_cols=223  Identities=26%  Similarity=0.309  Sum_probs=137.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHcCChHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           47 YGNFEQAISLLKEVVRLSPN--LPETYNTLGLAHSALGNHKSAFDFYVIAAH--LSPKDSALWKQLLTFAVQKGDTAQAM  122 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~  122 (687)
                      .+.+..+...+...+...+.  ........+..+...+++..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            35666666777776666665  356666777777777777777777777765  55666666777777777777777777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632          123 YYIRQAIRAEPKDISLRIHLAS-FYVEIGDYEKAAESYEQIQKLFP---DNVDATKTGAQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       123 ~~~~~a~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  198 (687)
                      ..+..++...+.+.......+. ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            7777777766655444444444 66677777777777777666554   2344445555555666666666666666666


Q ss_pred             hCCC-CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632          199 VHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       199 ~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  275 (687)
                      ..+. ...  .+..++..+...++++.|...+..++..    .+.........+..+...+.++.+...+.+.+...+
T Consensus       196 ~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         196 LNPDDDAE--ALLNLGLLYLKLGKYEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             hCcccchH--HHHHhhHHHHHcccHHHHHHHHHHHHhh----CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            6665 232  4556666666666666666666666665    333333344444444444455555555555554443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.87  E-value=9.9e-08  Score=89.13  Aligned_cols=104  Identities=16%  Similarity=0.214  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 005632          101 DSALWKQLLTFA-VQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDAT  173 (687)
Q Consensus       101 ~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~  173 (687)
                      +...++..|..+ +..|+|++|+..|+..+..+|++   +.+++.+|.+|+..|++++|+..|+++++.+|++   ++++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            344455555544 44567777777777777777766   4667777777777777777777777777766653   5666


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      +.+|.++...|++++|...|+++++..|++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            6777777777777777777777777777665

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=8.4e-08  Score=90.93  Aligned_cols=99  Identities=14%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      .++.+++.|+..+++|.+|+....+++..+|+|..+++..|.++...|+++.|+..|++++++.|.|..+...+..+..+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            35677788888888888888888888888888888888888888888888888888888888888887777777777766


Q ss_pred             cCChHHH-HHHHHHHHHhCC
Q 005632          183 CGQTARS-IGILEEYLKVHP  201 (687)
Q Consensus       183 ~g~~~~A-~~~~~~~~~~~p  201 (687)
                      ..++.+. .+.|..++..-+
T Consensus       338 ~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHhhccc
Confidence            6555544 567777766543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.85  E-value=3.7e-07  Score=87.85  Aligned_cols=202  Identities=14%  Similarity=0.062  Sum_probs=125.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCC----CcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC--CchHHHHHHH
Q 005632          177 AQLFLKCGQTARSIGILEEYLKVHPSD----ADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK--ELPLKLKVKA  250 (687)
Q Consensus       177 a~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l  250 (687)
                      |..|...|++++|...|.++....-..    .....+...+.++... ++++|+.++++++..+...+  .....++..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            444555566666666665554432111    1112344445554444 77777777777777653222  2234566677


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHhhhCc-----hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC--CC----cHHHHH
Q 005632          251 GICYLRL-GNMEKAEILFADLQWKNA-----IDHADLITEVADTLMSLGHSNSALKYYHFLETNAG--TD----NGYLYL  318 (687)
Q Consensus       251 ~~~~~~~-~~~~~A~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~  318 (687)
                      |.+|... |++++|+.+|+++.....     ......+..+|.++...|+|++|++.|+++.....  +.    ....++
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            7777777 788888888888765322     22456677889999999999999999998775421  11    123556


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhcCCC---H--HHHHHHHHHHHH--cCCHHHHHHhcCCCCcCCc
Q 005632          319 KLAECYLSLKERAHAIMFFYKALDRFEDN---I--DARLTLASLLLE--EAKEEEAITLLSPPKDLDS  379 (687)
Q Consensus       319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~--~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~  379 (687)
                      ..+.|++..||+..|...+++....+|..   .  .....|...+..  ...+.+|+.-|.....+++
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence            77889999999999999999999998854   2  233344454433  3458889999988877766

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.85  E-value=2.3e-05  Score=74.55  Aligned_cols=222  Identities=23%  Similarity=0.262  Sum_probs=131.9

Q ss_pred             cCChHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           81 LGNHKSAFDFYVIAAHLSPK--DSALWKQLLTFAVQKGDTAQAMYYIRQAIR--AEPKDISLRIHLASFYVEIGDYEKAA  156 (687)
Q Consensus        81 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~  156 (687)
                      .+.+..+...+...+...+.  ........+..+...+.+..+...+.....  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            45666666777777666655  356666777777777777777777777776  56666677777777777777777777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Q 005632          157 ESYEQIQKLFPDNVDATKTGAQ-LFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQI  234 (687)
Q Consensus       157 ~~~~~~~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  234 (687)
                      ..+..++...+.+.......+. ++...|+++.|...+.+++...|. ..........+..+...++++.++..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            7777777766665444444444 677777777777777777665542 11112344444445566666666666666666


Q ss_pred             HhccCCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005632          235 VRFSGKEL-PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET  307 (687)
Q Consensus       235 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  307 (687)
                      .    .+. ....+..++..+...+++..|...+..++...+. ....+...+..+...+.++++...+.+...
T Consensus       196 ~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 L----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             h----CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5    333 3444555555555555555555555555544432 233333333333334444444444444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=6e-08  Score=91.91  Aligned_cols=144  Identities=20%  Similarity=0.209  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      ....|..+++.|+|..|...|++++..-+...            .-+.++....    ..   .-..++.+++.++.+++
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~----~~---~k~~~~lNlA~c~lKl~  271 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKA----EA---LKLACHLNLAACYLKLK  271 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHH----HH---HHHHHhhHHHHHHHhhh
Confidence            44556777777777777777777665321100            0000111110    00   11235778888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH-HHHH
Q 005632          151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT-LQHI  229 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A-~~~~  229 (687)
                      +|..|+..+.+++..+|+|..+++..|.++...|+++.|+..|+++++..|++..  +...+..+..+..++.+. .+.|
T Consensus       272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka--~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA--ARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888865  555666666665555444 6677


Q ss_pred             HHHHHH
Q 005632          230 EHAQIV  235 (687)
Q Consensus       230 ~~~~~~  235 (687)
                      .++...
T Consensus       350 ~~mF~k  355 (397)
T KOG0543|consen  350 ANMFAK  355 (397)
T ss_pred             HHHhhc
Confidence            777665

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=0.00014  Score=70.53  Aligned_cols=387  Identities=15%  Similarity=0.029  Sum_probs=243.8

Q ss_pred             hHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHH-HcCChHHHHHHHHHHhccC---CCC--
Q 005632           33 GVTKMLGEASLQYAYG--NFEQAISLLKEVVRLSPNL---PETYNTLGLAHS-ALGNHKSAFDFYVIAAHLS---PKD--  101 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~---p~~--  101 (687)
                      -...+++.|..+...|  +...++++++..+...|.+   +.....+|.+++ ...+++.|...++++..+.   |+.  
T Consensus         6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd   85 (629)
T KOG2300|consen    6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD   85 (629)
T ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence            4567889999999999  9999999999999887763   446677777665 4789999999999998664   333  


Q ss_pred             --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H
Q 005632          102 --SALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDI----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN----V  170 (687)
Q Consensus       102 --~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~  170 (687)
                        ..+...++.+|.... .+..+...+++++++....+    ...+.++.++.-..++..|++.+.-..+....-    .
T Consensus        86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~yl  165 (629)
T KOG2300|consen   86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYL  165 (629)
T ss_pred             hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHH
Confidence              345678899998877 88999999999999876665    356789999999999999999854332221111    1


Q ss_pred             HHHHHH--HHHHHHcCChH---HHHHHHHHHHHhCCCCCcH----HH-HHHHH-HHHHHcchHHHHHHHHHHHHHH---h
Q 005632          171 DATKTG--AQLFLKCGQTA---RSIGILEEYLKVHPSDADL----SV-IDLLV-AILMENNAYEKTLQHIEHAQIV---R  236 (687)
Q Consensus       171 ~~~~~l--a~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~----~~-~~~la-~~~~~~~~~~~A~~~~~~~~~~---~  236 (687)
                      .+.+.+  +.++...-+..   .+.....++.+....++.-    .+ +..+- .-|...|+...+...+++.-..   .
T Consensus       166 r~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti  245 (629)
T KOG2300|consen  166 RMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI  245 (629)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Confidence            222322  33333333333   3444444444443333211    11 11222 2334457766666665544332   1


Q ss_pred             cc-----------CCCchHHHH---------HHH--HHHHHHcCCHHHHHHHHHHHhhhCch----h---------hHHH
Q 005632          237 FS-----------GKELPLKLK---------VKA--GICYLRLGNMEKAEILFADLQWKNAI----D---------HADL  281 (687)
Q Consensus       237 ~~-----------~~~~~~~~~---------~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~----~---------~~~~  281 (687)
                      ..           .++.....|         ..+  ...-...|-+++|.++-++++.....    +         ....
T Consensus       246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~  325 (629)
T KOG2300|consen  246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL  325 (629)
T ss_pred             CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence            11           011111111         111  11112346677777777766543110    0         1223


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhcc--CCC-------cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC-C--HH
Q 005632          282 ITEVADTLMSLGHSNSALKYYHFLETNA--GTD-------NGYLYLKLAECYLSLKERAHAIMFFYKALDRFED-N--ID  349 (687)
Q Consensus       282 ~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~  349 (687)
                      +..++.+-.-.|++.+|++-...+.+..  .|.       .+.+...+|.....-+.++.|...|..+.+.... +  .-
T Consensus       326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~  405 (629)
T KOG2300|consen  326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF  405 (629)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence            4456667778899999998887766541  233       4556677787777888999999999999887543 2  23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      +..++|.+|...|+.+.-.+.++..-..+...     ....-....+++..|...+.+|++.||...+.+.++-+
T Consensus       406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s-----~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNS-----LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc-----chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            44679999999998777666666443322111     11223455688999999999999999976666665544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.83  E-value=3.4e-07  Score=76.40  Aligned_cols=159  Identities=13%  Similarity=0.067  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHH
Q 005632          259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFY  338 (687)
Q Consensus       259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  338 (687)
                      +++....-..+.+...|  ...-.+.++..+.+.|++.+|...|++++.....+++..+..+++..+..+++..|...++
T Consensus        71 dP~R~~Rea~~~~~~Ap--Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe  148 (251)
T COG4700          71 DPERHLREATEELAIAP--TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE  148 (251)
T ss_pred             ChhHHHHHHHHHHhhch--hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            44444444444444433  5566788999999999999999999998877677889999999999999999999999999


Q ss_pred             HHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHH
Q 005632          339 KALDRFED--NIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDA  416 (687)
Q Consensus       339 ~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  416 (687)
                      +..+.+|.  .++..+.++..+...|++.+|...|+.+++..|..             +.....+..+..+|+.++|...
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-------------~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-------------QARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-------------HHHHHHHHHHHHhcchhHHHHH
Confidence            99998885  47788889999999999999999999999888854             4677788889999999999998


Q ss_pred             HHHHHHHhhhhHHHhh
Q 005632          417 IFPLVCESLCVEALRQ  432 (687)
Q Consensus       417 ~~~~~~~~~~~~~~~~  432 (687)
                      +..+.+......+...
T Consensus       216 ~~~v~d~~~r~~~H~r  231 (251)
T COG4700         216 YVAVVDTAKRSRPHYR  231 (251)
T ss_pred             HHHHHHHHHhcchhHH
Confidence            8888877766544444

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=9.5e-05  Score=71.65  Aligned_cols=192  Identities=12%  Similarity=-0.015  Sum_probs=118.7

Q ss_pred             HhhcHHHHHHHHHHHHHhcC------CCH--------HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhh
Q 005632          326 SLKERAHAIMFFYKALDRFE------DNI--------DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWW  391 (687)
Q Consensus       326 ~~g~~~~A~~~~~~al~~~p------~~~--------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  391 (687)
                      ..|-+++|.++-++++....      ...        ..+..++.+-.-.|++.+|++.+..+.+.....+.+  .-...
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~--~Llr~  364 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTP--LLLRA  364 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCch--HHHHH
Confidence            34556777777777665421      111        223345666677899999998887666544332210  00012


Q ss_pred             hhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchh
Q 005632          392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKS  471 (687)
Q Consensus       392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (687)
                      ..+.+++.+|.-....|.++.|...|....+..-..                                            
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~--------------------------------------------  400 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI--------------------------------------------  400 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH--------------------------------------------
Confidence            244678888888888999999998888888765210                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHH
Q 005632          472 ELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEE  551 (687)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e  551 (687)
                                                                                +-+.-+...+|-.|.+.|+-+.
T Consensus       401 ----------------------------------------------------------dl~a~~nlnlAi~YL~~~~~ed  422 (629)
T KOG2300|consen  401 ----------------------------------------------------------DLQAFCNLNLAISYLRIGDAED  422 (629)
T ss_pred             ----------------------------------------------------------HHHHHHHHhHHHHHHHhccHHH
Confidence                                                                      0011133466777888887666


Q ss_pred             HHHHHHHHHHHhhccCc-hhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchh-------hHHHHHHHHHhcC
Q 005632          552 ASEIINLSMRLAYNILP-LEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSA-------WNCYYKVLSRMGK  622 (687)
Q Consensus       552 A~~~l~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~  622 (687)
                      -.++++..--.+...++ +.-...+.+..+..++..|++.+|...+++.|+.. +..+.       +.+++.++..-|+
T Consensus       423 ~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn  500 (629)
T KOG2300|consen  423 LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGN  500 (629)
T ss_pred             HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcc
Confidence            65665544322111222 33356778888888999999999999999999765 33222       4555666666666

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.82  E-value=6.3e-05  Score=73.95  Aligned_cols=381  Identities=13%  Similarity=0.059  Sum_probs=221.7

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH-
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ-  107 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-  107 (687)
                      ..|-++..++.+...+-.+ -+++..+.|++.+...|..+.+|.......+...+|+.-..+|.+.+...-+ .+.|.. 
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lY   92 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLY   92 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHH
Confidence            4466778888777666655 9999999999999999999999999999999999999999999998864322 445543 


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH----HH---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHH
Q 005632          108 LLTFAVQKGDTAQAMYYIRQA----IR---AEPKDISLRIHLASFYV---------EIGDYEKAAESYEQIQKLFPDNVD  171 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a----~~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~~~~~p~~~~  171 (687)
                      +..+-...|+...+....-++    +.   .++.....|...+..+.         .+.+.+.....|++++..--.+.+
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE  172 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE  172 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence            344444555555544444444    33   24555556666555443         233556677788888864322221


Q ss_pred             -HHH-----------HHH--HHHHHcCChHHHHHHHHHHHHh-------CCCCCc---------H---------------
Q 005632          172 -ATK-----------TGA--QLFLKCGQTARSIGILEEYLKV-------HPSDAD---------L---------------  206 (687)
Q Consensus       172 -~~~-----------~la--~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~---------~---------------  206 (687)
                       .|.           ..|  .+--....|..|...+++....       +|.-+.         .               
T Consensus       173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL  252 (656)
T KOG1914|consen  173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL  252 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence             111           111  1112223344555554444332       111000         0               


Q ss_pred             ---------------------------HHHHHHHHHHHHcch--------------HHHHHHHHHHHHHHhccCCCchHH
Q 005632          207 ---------------------------SVIDLLVAILMENNA--------------YEKTLQHIEHAQIVRFSGKELPLK  245 (687)
Q Consensus       207 ---------------------------~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~  245 (687)
                                                 .+|+..+..+...++              -+++..++++++...   ......
T Consensus       253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l---~~~~~~  329 (656)
T KOG1914|consen  253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL---LKENKL  329 (656)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH---HHHHHH
Confidence                                       122222222222222              344444555444331   111222


Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHH
Q 005632          246 LKVKAGICYLRLG---NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE  322 (687)
Q Consensus       246 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~  322 (687)
                      +++.++..-...-   +++.....+++++.....+..-++..+-..-.+..-...|..+|.++.+.. .....++..-|.
T Consensus       330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~  408 (656)
T KOG1914|consen  330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAAL  408 (656)
T ss_pred             HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHH
Confidence            2222222221111   244444555555444333233345555555556666777888888877552 222233333333


Q ss_pred             -HHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHH
Q 005632          323 -CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLC  401 (687)
Q Consensus       323 -~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la  401 (687)
                       =|...++.+-|...|+-.++..++.+..-......+...|+-..|..+|++++.. ..++.        ...++|..+-
T Consensus       409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~--------ks~~Iw~r~l  479 (656)
T KOG1914|consen  409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSAD--------KSKEIWDRML  479 (656)
T ss_pred             HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChh--------hhHHHHHHHH
Confidence             2556789999999999999999999998888999999999999999999998876 11111        0124666666


Q ss_pred             HHHHHcCCchHHHHHHHHHHHHh
Q 005632          402 HIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       402 ~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      ..-..-|+...+++.-++.....
T Consensus       480 ~yES~vGdL~si~~lekR~~~af  502 (656)
T KOG1914|consen  480 EYESNVGDLNSILKLEKRRFTAF  502 (656)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhc
Confidence            66677777777766555554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.79  E-value=2e-08  Score=73.12  Aligned_cols=66  Identities=20%  Similarity=0.291  Sum_probs=52.3

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      +..|++++|+..|++++..+|+++.+++.+|.+++..|++++|...+.+++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            567888888888888888888888888888888888888888888888888888887777666654

...

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.79  E-value=2e-07  Score=91.67  Aligned_cols=153  Identities=16%  Similarity=0.161  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH--HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE--TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      .++..+..++..|.--.+-....     .|....  .--.+-..+...++++.|+..|++..+.+|+   +...++.++.
T Consensus       140 ~fi~~~~~~~~~G~~lG~~~~i~-----~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l  211 (395)
T PF09295_consen  140 NFIKLFPKLFERGWKLGSDPEIQ-----VPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL  211 (395)
T ss_pred             HHHHHHHHHhhcccccCCCCccC-----CCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH
Confidence            35555555666665443322211     133222  2223344455567888888888888877764   5666888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL  193 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  193 (687)
                      ..++..+|+..+.+++..+|.+...+...+..+...++++.|+...+++.+..|++...|..|+.+|...|+++.|+..+
T Consensus       212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            88888888888888888888888888888888888888899999999998888888888888999999999999888777


Q ss_pred             HHH
Q 005632          194 EEY  196 (687)
Q Consensus       194 ~~~  196 (687)
                      +.+
T Consensus       292 Ns~  294 (395)
T PF09295_consen  292 NSC  294 (395)
T ss_pred             hcC
Confidence            754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.78  E-value=2.5e-07  Score=74.33  Aligned_cols=95  Identities=22%  Similarity=0.257  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK---DISLRIHL  142 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~~l  142 (687)
                      .+++.+|.++-..|+.++|+.+|++++......   ..++..+|..+...|++++|+..+++.+...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            345555555555555555555555555543222   334555555555555555555555555555554   44444555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQ  163 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~  163 (687)
                      +.++...|++++|+..+..++
T Consensus        82 Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            555555555555555555444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.77  E-value=2.5e-07  Score=90.97  Aligned_cols=124  Identities=15%  Similarity=0.235  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG  184 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g  184 (687)
                      ...+..++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            335556667788999999999999987764   66778999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632          185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ  233 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  233 (687)
                      +++.|+.+.++++...|++..  .|..|+.+|...|+++.|+..++.+-
T Consensus       249 ~~~lAL~iAk~av~lsP~~f~--~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPSEFE--TWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CHHHHHHHHHHHHHhCchhHH--HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999999999999999876  79999999999999999998888654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.77  E-value=2.8e-07  Score=83.38  Aligned_cols=108  Identities=22%  Similarity=0.274  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---CHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALWKQ  107 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~  107 (687)
                      ....|..|..++..|+|..|...|...++..|+.   +.++|.||.+++.+|++++|...|..+++..|+   -+++++.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            3558999999999999999999999999999874   678999999999999999999999999887665   4678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH  141 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  141 (687)
                      +|.+...+|+.++|-..|+++++..|+...+...
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999999999999888766543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=4.9e-06  Score=73.68  Aligned_cols=204  Identities=19%  Similarity=0.161  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Q 005632          173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGI  252 (687)
Q Consensus       173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~  252 (687)
                      ....|.+....|...+.+.-+......         ...+..........+..+..+++-+.          .+.+.+..
T Consensus       125 R~lhAe~~~~lgnpqesLdRl~~L~~~---------V~~ii~~~e~~~~~ESsv~lW~KRl~----------~Vmy~~~~  185 (366)
T KOG2796|consen  125 RILHAELQQYLGNPQESLDRLHKLKTV---------VSKILANLEQGLAEESSIRLWRKRLG----------RVMYSMAN  185 (366)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHH---------HHHHHHHHHhccchhhHHHHHHHHHH----------HHHHHHHH
Confidence            334456666667766666555544321         11222222333333444555544332          34567778


Q ss_pred             HHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-----CCCcHHHHHHHHHHHHHh
Q 005632          253 CYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-----GTDNGYLYLKLAECYLSL  327 (687)
Q Consensus       253 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~  327 (687)
                      ++.-.|.|.-....+.++++.+|+..+.....+|.+..+.|+.+.|..+++.+.+..     ......+..+.+.+|...
T Consensus       186 ~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~  265 (366)
T KOG2796|consen  186 CLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ  265 (366)
T ss_pred             HHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc
Confidence            888889999999999999998887899999999999999999999999998654331     233556677788889999


Q ss_pred             hcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHH
Q 005632          328 KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY  404 (687)
Q Consensus       328 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  404 (687)
                      +++.+|...|.+++..+|.++.+..+.+.|+.-.|+..+|++.++.+.+..|....         ...+.+++..+|
T Consensus       266 nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l---------~es~~~nL~tmy  333 (366)
T KOG2796|consen  266 NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL---------HESVLFNLTTMY  333 (366)
T ss_pred             cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch---------hhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987653         344566666655

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.74  E-value=3.6e-05  Score=78.05  Aligned_cols=235  Identities=16%  Similarity=0.149  Sum_probs=160.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHh----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQA------IRA----EPKDI-SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT  173 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a------~~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  173 (687)
                      |-.-|.++.+..++++|+++|++.      +++    .|... ..-...|.-+...|+++.|+..|-++--        .
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------~  735 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------L  735 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------H
Confidence            344455566666677777766542      222    23221 2233457777888999999888866532        2


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632          174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC  253 (687)
Q Consensus       174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (687)
                      ...........++.+|+..++.+........   .|-.++.-|...|+|+.|.+.|.++-..            ......
T Consensus       736 ~kaieaai~akew~kai~ildniqdqk~~s~---yy~~iadhyan~~dfe~ae~lf~e~~~~------------~dai~m  800 (1636)
T KOG3616|consen  736 IKAIEAAIGAKEWKKAISILDNIQDQKTASG---YYGEIADHYANKGDFEIAEELFTEADLF------------KDAIDM  800 (1636)
T ss_pred             HHHHHHHhhhhhhhhhHhHHHHhhhhccccc---cchHHHHHhccchhHHHHHHHHHhcchh------------HHHHHH
Confidence            2333445567789999998887766554443   3557888999999999999998876332            224456


Q ss_pred             HHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHH
Q 005632          254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHA  333 (687)
Q Consensus       254 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  333 (687)
                      |-+.|++.+|..+-++..  .|......+...+.-+-+.|+|.+|.++|   +....|+.+      ...|-+.|.++.-
T Consensus       801 y~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly---iti~~p~~a------iqmydk~~~~ddm  869 (1636)
T KOG3616|consen  801 YGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY---ITIGEPDKA------IQMYDKHGLDDDM  869 (1636)
T ss_pred             HhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee---EEccCchHH------HHHHHhhCcchHH
Confidence            788899999998888764  34456777888888889999999999888   333345432      2456667777776


Q ss_pred             HHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632          334 IMFFYKALDRFEDN-IDARLTLASLLLEEAKEEEAITLLSPPKD  376 (687)
Q Consensus       334 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~  376 (687)
                      +...++   ..|+. .+.+..++.-+...|+...|...|-++-+
T Consensus       870 irlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  870 IRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             HHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence            665543   34443 46778899999999999999988876654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.74  E-value=4.8e-07  Score=73.69  Aligned_cols=87  Identities=18%  Similarity=0.154  Sum_probs=72.8

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---HH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---AL  104 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  104 (687)
                      ......++..|...+..|+|++|++.|+.+....|.   ...+...+|.+|+..+++++|+..+++-++++|.++   .+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            345677899999999999999999999999998876   456889999999999999999999999999988765   45


Q ss_pred             HHHHHHHHHHcCC
Q 005632          105 WKQLLTFAVQKGD  117 (687)
Q Consensus       105 ~~~la~~~~~~g~  117 (687)
                      ++..|.+++.+..
T Consensus        87 ~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   87 YYMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777777776654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.72  E-value=5.8e-07  Score=72.22  Aligned_cols=96  Identities=24%  Similarity=0.222  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD---NVDATKTG  176 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l  176 (687)
                      .+++.+|.++-..|+.++|+..|++++......   ..+++.+|..+...|++++|+..+++.+...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            456778888888888888888888888865433   457778888888888888888888888888777   66777777


Q ss_pred             HHHHHHcCChHHHHHHHHHHHH
Q 005632          177 AQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       177 a~~~~~~g~~~~A~~~~~~~~~  198 (687)
                      +.++...|+.++|+..+-.++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8888888888888887766654

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=3.6e-07  Score=77.17  Aligned_cols=106  Identities=23%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           74 LGLAHSALGNHKSAFDFYVIAAHLSPKDS-----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      -|.-++..|+|.+|..-|..|+...|..+     ..+.+.|.+++.++.++.|+....++++++|.+..++...|.+|..
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            35555666666666666666666655432     2344556666666666666666666666666666666666666666


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      ...+++|++.|.++++.+|....+.-..+++
T Consensus       181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            6666666666666666666655555444444

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=2.8e-05  Score=75.16  Aligned_cols=294  Identities=12%  Similarity=0.143  Sum_probs=182.1

Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHcCChHHHHHHHHHHhcc-----CC----
Q 005632           30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAH-SALGNHKSAFDFYVIAAHL-----SP----   99 (687)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~-----~p----   99 (687)
                      ...+-..+...+...+..++|+...+.++.+-..+.++..+++..+.+. +..|.+.. ...++....+     .|    
T Consensus        13 ~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~   91 (696)
T KOG2471|consen   13 GEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVS   91 (696)
T ss_pred             ccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchh
Confidence            3445566778899999999999999999999888887766666666554 44444332 2222222111     11    


Q ss_pred             ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 005632          100 ------KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----ISLRIHLASFYVEIGDYEKAAESYEQIQKL---  165 (687)
Q Consensus       100 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---  165 (687)
                            +....+++.|.+++....+.+|++.....+..-..-     ..+-+..-..+....+.++|+.++.-.-++   
T Consensus        92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~  171 (696)
T KOG2471|consen   92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAE  171 (696)
T ss_pred             cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                  223456778888888888888888776665532111     112333344555566666776654332221   


Q ss_pred             ---CC--CC-------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005632          166 ---FP--DN-------------------------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI  215 (687)
Q Consensus       166 ---~p--~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~  215 (687)
                         .+  ++                         ..+.......+....+..-+....+.+..+..+.+.  .+...+..
T Consensus       172 ~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~--~l~LKsq~  249 (696)
T KOG2471|consen  172 KRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSM--ALLLKSQL  249 (696)
T ss_pred             hhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcH--HHHHHHHH
Confidence               00  00                         022333344556666666666666666666555544  56677888


Q ss_pred             HHHcchHHHHHHHHHHHHHHhccC---CC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC---------c------
Q 005632          216 LMENNAYEKTLQHIEHAQIVRFSG---KE--LPLKLKVKAGICYLRLGNMEKAEILFADLQWKN---------A------  275 (687)
Q Consensus       216 ~~~~~~~~~A~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~------  275 (687)
                      ++..|++.+|.+.+...--...+.   .|  ..-..+.++|.++++.|.|.-+..+|.+++...         |      
T Consensus       250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl  329 (696)
T KOG2471|consen  250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL  329 (696)
T ss_pred             HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence            888888888887776542211111   01  123445778888888888888888888877411         0      


Q ss_pred             --hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Q 005632          276 --IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL  327 (687)
Q Consensus       276 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~  327 (687)
                        ....++.++.|..+...|++-.|.++|.++... ...+|.+|..+|.|+...
T Consensus       330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence              124567778888888888888888888877766 566778888888877654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.68  E-value=1.1e-08  Score=93.52  Aligned_cols=235  Identities=13%  Similarity=-0.026  Sum_probs=138.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632          106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ  185 (687)
Q Consensus       106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  185 (687)
                      -..|.-|+.+|.|++|+++|.+++..+|.++..+.+.+..|+++..+..|...+..++.++.....+|...+..-..+|.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            45677788888888888888888888888888888888888888888888888888888887778888888888888888


Q ss_pred             hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC---chHH--HHHHHHHHHHHcCCH
Q 005632          186 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE---LPLK--LKVKAGICYLRLGNM  260 (687)
Q Consensus       186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~--~~~~l~~~~~~~~~~  260 (687)
                      ..+|.+-++.++.+.|.+.+  .    -..+.......++.-..    +..++..+   ....  ..-..|..+...|.+
T Consensus       181 ~~EAKkD~E~vL~LEP~~~E--L----kK~~a~i~Sl~E~~I~~----KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~  250 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIE--L----KKSLARINSLRERKIAT----KSTPGFTPARQGMIQILPIKKPGYKFSKKAMR  250 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHH--H----HHHHHHhcchHhhhHHh----hcCCCCCccccchhhhccccCcchhhhhhhcc
Confidence            88888888888888887654  1    12222222222211111    10000000   0000  011234455556666


Q ss_pred             HHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632          261 EKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA  340 (687)
Q Consensus       261 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  340 (687)
                      +.++.++.+-+..... +...... +..+.+..+++.++....+.... .|.........+.+-.-.|...++...++.+
T Consensus       251 ~~~i~~~~~~~A~~~~-~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~-~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~  327 (536)
T KOG4648|consen  251 SVPVVDVVSPRATIDD-SNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP-KPTPMPDTSGPPKAETIAKTSKEVKPTKQTA  327 (536)
T ss_pred             ccceeEeeccccccCc-cccCccc-HHHHHHHhhcchhHHHHHHhcCC-CCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence            6666655553332211 1111111 44555555666666555554433 3333333333344444456666777777777


Q ss_pred             HHhcCCCHHHHHH
Q 005632          341 LDRFEDNIDARLT  353 (687)
Q Consensus       341 l~~~p~~~~~~~~  353 (687)
                      +.+.|.+..+...
T Consensus       328 ~~~~P~~~~~~~~  340 (536)
T KOG4648|consen  328 VKVAPAVETPKET  340 (536)
T ss_pred             eeeccccccchhh
Confidence            7777766444333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.68  E-value=8.2e-08  Score=69.89  Aligned_cols=63  Identities=29%  Similarity=0.487  Sum_probs=29.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG  176 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  176 (687)
                      ..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444444444444333

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.67  E-value=4.5e-06  Score=69.85  Aligned_cols=148  Identities=14%  Similarity=0.107  Sum_probs=88.7

Q ss_pred             ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632           83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR-AEPKDISLRIHLASFYVEIGDYEKAAESYEQ  161 (687)
Q Consensus        83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  161 (687)
                      |.+....-..+.+...|. ..-.+.||..+...|++.+|...|++++. +.-+++..+..++...+..+++..|...+++
T Consensus        71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~  149 (251)
T COG4700          71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED  149 (251)
T ss_pred             ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            333333333333333333 23355666666677777777777766665 3455666666666777777777777777776


Q ss_pred             HHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Q 005632          162 IQKLFPD--NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI  234 (687)
Q Consensus       162 ~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  234 (687)
                      ..+.+|.  .++....+|+.+...|++.+|...|+.++...|+..   .....+..+..+|+.+++..-+....+
T Consensus       150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~---ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ---ARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH---HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            6666553  355566666667777777777777777666666543   344556666666666666555554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.66  E-value=8.9e-07  Score=80.18  Aligned_cols=101  Identities=22%  Similarity=0.226  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGAQ  178 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~  178 (687)
                      .+..|.-++..|+|..|...|...++..|++   +++++.||.+++.+|++++|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5555666666666666666666666666654   4566666666666666666666666666665554   466666666


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          179 LFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       179 ~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      +...+|+.++|...|+++++..|+...
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            666666666666666666666666543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.64  E-value=3.6e-05  Score=69.23  Aligned_cols=190  Identities=14%  Similarity=0.104  Sum_probs=114.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-HHHH
Q 005632          135 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVID  210 (687)
Q Consensus       135 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~  210 (687)
                      .+..++.-|...+..|++++|+..|+.+....|..+   .+...++..+++.+++++|+...++.+...|.+++. .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            355677777777777888888888877777766543   567777777788888888888888888887777653 2445


Q ss_pred             HHHHHHHHc--------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHH
Q 005632          211 LLVAILMEN--------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLI  282 (687)
Q Consensus       211 ~la~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  282 (687)
                      ..|.++...        .-..+|+..|+..+..+|.+ +....+                 ..-+..+..    .-...-
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS-~Ya~dA-----------------~~~i~~~~d----~LA~~E  170 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS-RYAPDA-----------------KARIVKLND----ALAGHE  170 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC-cchhhH-----------------HHHHHHHHH----HHHHHH
Confidence            555554332        22345666666666664321 111111                 111111100    122233


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhccCCC---cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632          283 TEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN  347 (687)
Q Consensus       283 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  347 (687)
                      ..+|..|.+.|.+..|+..++.+++. .|+   ...++..+..+|..+|-.++|...-.-+-...|++
T Consensus       171 m~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         171 MAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            45677777777777777777777765 332   44566677777777777777766555444444444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.61  E-value=3e-07  Score=67.98  Aligned_cols=62  Identities=31%  Similarity=0.492  Sum_probs=27.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA  172 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  172 (687)
                      +|...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            34444444444444444444444444444444444444444444444444444444444433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.59  E-value=3.1e-07  Score=67.95  Aligned_cols=65  Identities=23%  Similarity=0.336  Sum_probs=37.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHH
Q 005632           42 SLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK  106 (687)
Q Consensus        42 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  106 (687)
                      ..++..++|++|++.+++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555554433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.55  E-value=0.00053  Score=67.69  Aligned_cols=354  Identities=10%  Similarity=0.026  Sum_probs=208.5

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 005632           58 KEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS  137 (687)
Q Consensus        58 ~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  137 (687)
                      ++-++.+|.+.++|+.|..-+..+ -+++..+.|++.+...|..+.+|.......+...+|+.-..+|.+++...- +.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence            677899999999999999877666 999999999999999999999999999999999999999999999987432 344


Q ss_pred             HHHH-HHHHHHHcCCHHHHHHH----HHHHHHh---CCCCHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHhC
Q 005632          138 LRIH-LASFYVEIGDYEKAAES----YEQIQKL---FPDNVDATKTGAQLF---------LKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       138 ~~~~-la~~~~~~g~~~~A~~~----~~~~~~~---~p~~~~~~~~la~~~---------~~~g~~~~A~~~~~~~~~~~  200 (687)
                      .|.. +..+-...|+...+...    |+-++..   ++....+|...+..+         ..+.+.+.-...|++++..-
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP  167 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP  167 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence            4433 33333444555444444    4444432   455566777666554         23345666777888887643


Q ss_pred             CCCCcHHHHHH-----------HH--HHHHHcchHHHHHHHHHHHHHHhcc-----------------------------
Q 005632          201 PSDADLSVIDL-----------LV--AILMENNAYEKTLQHIEHAQIVRFS-----------------------------  238 (687)
Q Consensus       201 p~~~~~~~~~~-----------la--~~~~~~~~~~~A~~~~~~~~~~~~~-----------------------------  238 (687)
                      -.+.+ ..|..           .|  .+......|..|...+++......+                             
T Consensus       168 m~nlE-kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w  246 (656)
T KOG1914|consen  168 MHNLE-KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW  246 (656)
T ss_pred             cccHH-HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            33322 12211           11  1223345566666666655443110                             


Q ss_pred             --CCC-------------------------chHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHhhhCchh
Q 005632          239 --GKE-------------------------LPLKLKVKAGICYLRLGN--------------MEKAEILFADLQWKNAID  277 (687)
Q Consensus       239 --~~~-------------------------~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~  277 (687)
                        .+|                         ..+.+|+..+..+...++              .+++..++++.+......
T Consensus       247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~  326 (656)
T KOG1914|consen  247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE  326 (656)
T ss_pred             HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence              000                         111222222222222222              344445555544433222


Q ss_pred             hHHHHHHHHHHHHhcCC---hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHH
Q 005632          278 HADLITEVADTLMSLGH---SNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTL  354 (687)
Q Consensus       278 ~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  354 (687)
                      +...++.++..-...-+   ++..-..+++++.....+-.-+|..+-..-.+..-...|...|.++-+..-...+++..-
T Consensus       327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~  406 (656)
T KOG1914|consen  327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA  406 (656)
T ss_pred             HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence            33333333332222222   444455555555442222333344444444444556677777777765433333344333


Q ss_pred             HH-HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Q 005632          355 AS-LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC  426 (687)
Q Consensus       355 a~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  426 (687)
                      |. -|...++..-|..+|+--+..+++++.            .-......+...|+-..+...|++++...+.
T Consensus       407 A~mEy~cskD~~~AfrIFeLGLkkf~d~p~------------yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~  467 (656)
T KOG1914|consen  407 ALMEYYCSKDKETAFRIFELGLKKFGDSPE------------YVLKYLDFLSHLNDDNNARALFERVLTSVLS  467 (656)
T ss_pred             HHHHHHhcCChhHHHHHHHHHHHhcCCChH------------HHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence            32 244578888899999988888887763            5566667778888888898888888877433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.52  E-value=4.3e-06  Score=68.21  Aligned_cols=85  Identities=16%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK---DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRI  140 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~  140 (687)
                      .+..++.-|...+..|+|.+|++.|+.+....|.   ...+.+.++.+|+..|++++|+..+++.++++|.++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            3456777777777777777777777777776654   345667777777777777777777777777777664   3566


Q ss_pred             HHHHHHHHcCC
Q 005632          141 HLASFYVEIGD  151 (687)
Q Consensus       141 ~la~~~~~~g~  151 (687)
                      ..|.++..+..
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            66666666544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.52  E-value=4.3e-05  Score=66.75  Aligned_cols=187  Identities=17%  Similarity=0.131  Sum_probs=132.7

Q ss_pred             CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CC-chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC
Q 005632           28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLS-----PN-LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD  101 (687)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  101 (687)
                      ++......-+..-|+.|--..+++.|=..|-++-+..     .+ .+..|...+.|| +.++..+|..++++++++..+-
T Consensus        28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~  106 (288)
T KOG1586|consen   28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM  106 (288)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh
Confidence            3444444444455677777888999988888886542     12 344566666665 4559999999999999886543


Q ss_pred             HH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632          102 SA------LWKQLLTFAVQK-GDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus       102 ~~------~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                      ..      .+..+|.+|... .++++|+.+|+++-+-....      ...+...+..-...++|.+|+..|++.....-+
T Consensus       107 Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  107 GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            32      355788888766 89999999999988754332      234566677778889999999999998876655


Q ss_pred             CH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005632          169 NV-------DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI  215 (687)
Q Consensus       169 ~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~  215 (687)
                      ++       +.++.-|.+++-..+.-.+...+++..+.+|...+.+-...+..+
T Consensus       187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L  240 (288)
T KOG1586|consen  187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL  240 (288)
T ss_pred             chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence            54       345566777787788888889999999999987764433334333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=1.9e-06  Score=72.88  Aligned_cols=102  Identities=19%  Similarity=0.202  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632          104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ  178 (687)
Q Consensus       104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  178 (687)
                      -+-.-|.-++..|+|++|...|..++...|..+     ..+.+.|.+.+.++.++.|+..+.++++++|.+..++...|.
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe  176 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE  176 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence            344557778888999999999999998888654     357778888899999999999999999999988888888899


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          179 LFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       179 ~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      +|.++..+++|+.-|.+++..+|....
T Consensus       177 ayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  177 AYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence            999999999999999999998888764

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=0.00083  Score=71.17  Aligned_cols=272  Identities=16%  Similarity=0.101  Sum_probs=187.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      |......+-|++|..+|++.    .-+..+...+   ....+..+.|.++.++.     +.+..|..+|.+....|...+
T Consensus      1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence            44555555666666666542    1122222211   12345666666665554     557889999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      |++.|-++     +++..+.....+..+.|.|++-+.++..+.+... .+.+-..+...|.+.++..+-.+.+     ..
T Consensus      1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi-----~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI-----AG 1191 (1666)
T ss_pred             HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----cC
Confidence            99888775     6777888888888999999999998888776532 2334445566677777776655443     24


Q ss_pred             CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHH
Q 005632          201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD  280 (687)
Q Consensus       201 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  280 (687)
                      |+...   ....|.-++..|.|+.|.-.|..+-.            +..++..+..+|+|..|....+++      .+..
T Consensus      1192 pN~A~---i~~vGdrcf~~~~y~aAkl~y~~vSN------------~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1192 PNVAN---IQQVGDRCFEEKMYEAAKLLYSNVSN------------FAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred             CCchh---HHHHhHHHhhhhhhHHHHHHHHHhhh------------HHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence            55543   55788888899999988877765432            456888888999999999988886      3667


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 005632          281 LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE  360 (687)
Q Consensus       281 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  360 (687)
                      .|...+.++...+.+.-|.-+=     ..---.++-+-.+...|...|-+++-+..++.++.+...+...+..||.+|.+
T Consensus      1251 tWK~VcfaCvd~~EFrlAQiCG-----L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICG-----LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHHHHHHHHhchhhhhHHHhcC-----ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence            7777787887777776554322     11112344455667778888888888888888888777777777777777754


Q ss_pred             c
Q 005632          361 E  361 (687)
Q Consensus       361 ~  361 (687)
                      -
T Consensus      1326 y 1326 (1666)
T KOG0985|consen 1326 Y 1326 (1666)
T ss_pred             c
Confidence            3

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=8.2e-05  Score=66.19  Aligned_cols=164  Identities=18%  Similarity=0.233  Sum_probs=119.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh------------CCC---------chHHHHHHHHHHHHcCChHHHHHHHHHHhccC-
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRL------------SPN---------LPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-   98 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~------------~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-   98 (687)
                      |......|+..+.+.-+......            .|+         -..+.+.+..++.-.|.|.-....+.++++.+ 
T Consensus       129 Ae~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~  208 (366)
T KOG2796|consen  129 AELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP  208 (366)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC
Confidence            56666677777776655544321            111         12245666777777888888888888888877 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632           99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA  172 (687)
Q Consensus        99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  172 (687)
                      |.++.....+|.+.++.|+.+.|..+|++.-+..      .....+..+.+.++.-.+++.+|...|.+++..+|.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            5567777788888888888888888888554422      2234566777778888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      ..+.|.|+...|+..+|++.++.++.+.|...
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            88888888888888888888888888887654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.35  E-value=2.6e-05  Score=61.15  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHHHHHHHHH
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLTFA  112 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  112 (687)
                      +-.+|..+...|+.+.|++.|.+++..-|..+.+|.+.+..+.-+|+.++|++.+.+++++....    ..++...|.+|
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            44568888888999999999999999999999999999999999999999999999998876432    34577888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC
Q 005632          113 VQKGDTAQAMYYIRQAIRAEP  133 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p  133 (687)
                      ...|+-+.|..-|+.+.++..
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCC
Confidence            888888888888888877653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.34  E-value=8.6e-06  Score=79.62  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=48.5

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL---WKQLLTFAVQKGDTAQAMYYIRQAIRA  131 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~  131 (687)
                      .+|+++.+++++|.+|+..|++++|+..|+++++++|++..+   |+++|.+|..+|++++|+.+++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356667777777777777777777777777777777776643   777777777777777777777777765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.29  E-value=4.4e-06  Score=81.59  Aligned_cols=68  Identities=16%  Similarity=0.040  Sum_probs=51.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632           98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL---RIHLASFYVEIGDYEKAAESYEQIQKL  165 (687)
Q Consensus        98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~  165 (687)
                      +|+++.+++++|.+|+..|++++|+..|+++++++|++.++   |+++|.+|..+|++++|+.++++++++
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56777777777777777777777777777777777777644   777777777777777777777777775

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.28  E-value=0.00011  Score=72.79  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=85.9

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632           56 LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP  133 (687)
Q Consensus        56 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  133 (687)
                      ++..+++.+|.+...+..-+.....+|+..+|..++..++-..|..  ..++..+|.++.+.|...+|--.+..++.-.|
T Consensus       201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~  280 (886)
T KOG4507|consen  201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD  280 (886)
T ss_pred             HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence            3444555566554444444444445789999999999988877654  34577889999999999888888888887766


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632          134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       134 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      .-..-++.++.++...+++......|..+.+..|..
T Consensus       281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            666668889999999999999888998888887764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=4.4e-06  Score=72.98  Aligned_cols=103  Identities=15%  Similarity=0.196  Sum_probs=93.8

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL  108 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  108 (687)
                      ..++.+.++=.+|+.++....|+.|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+
T Consensus         5 ~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl   84 (284)
T KOG4642|consen    5 EMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL   84 (284)
T ss_pred             ccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence            45667777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRA  131 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~  131 (687)
                      |.+......|++|+..+.++..+
T Consensus        85 g~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   85 GQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHhhccccHHHHHHHHHHHH
Confidence            99999999999999999998664

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.00039  Score=64.27  Aligned_cols=161  Identities=14%  Similarity=0.006  Sum_probs=96.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHH
Q 005632           72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKDI---SLRIHLASFYV  147 (687)
Q Consensus        72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~---~~~~~la~~~~  147 (687)
                      ..-+.+....|++.+|-..+++.++-.|.+.-++..--.+++..|+...-...+++++.. +|+.|   .+.-.++..+.
T Consensus       107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~  186 (491)
T KOG2610|consen  107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE  186 (491)
T ss_pred             hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence            333445556666666666667777666766666666666666667666666666666655 44442   33344555666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHHHcchHHHH
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD--LSVIDLLVAILMENNAYEKT  225 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~~la~~~~~~~~~~~A  225 (687)
                      ..|-|++|.+.-+++++++|.+..+....+.++...|++.++.+...+--..-....-  ..-|...+.++...+.|+.|
T Consensus       187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a  266 (491)
T KOG2610|consen  187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA  266 (491)
T ss_pred             HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence            6677777777777777777776666666777777777777776665543222111000  01133455566666677777


Q ss_pred             HHHHHHH
Q 005632          226 LQHIEHA  232 (687)
Q Consensus       226 ~~~~~~~  232 (687)
                      ++.|.+-
T Consensus       267 leIyD~e  273 (491)
T KOG2610|consen  267 LEIYDRE  273 (491)
T ss_pred             HHHHHHH
Confidence            7766653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.25  E-value=9.8e-06  Score=68.24  Aligned_cols=66  Identities=17%  Similarity=0.102  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh----------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH----------KSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      |+.|.+.++.....+|.+++.++.-|.++..+.++          ++|+.-|++++.++|+..+++..+|.++...
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            56788888888888888888888888877765433          3455555555555566555555555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=0.00014  Score=66.57  Aligned_cols=162  Identities=20%  Similarity=0.191  Sum_probs=107.9

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH-HHHHHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-LWKQLLT  110 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~  110 (687)
                      +.....+..+......|++.+|...|..++...|++.++...++.|+...|+.+.|...+...-........ .......
T Consensus       132 ~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~  211 (304)
T COG3118         132 AEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIE  211 (304)
T ss_pred             hHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            355566778888899999999999999999999999999999999999999999988888764332222111 1111112


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~  188 (687)
                      .+.+.....+. ..+++.+..+|++.++.+.+|..+...|+++.|.+.+-..++.+..  +..+...+-.++...|.-+.
T Consensus       212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence            22222222222 2345556678888888888888888888888888888877776543  34555555555555554443


Q ss_pred             HHHHHH
Q 005632          189 SIGILE  194 (687)
Q Consensus       189 A~~~~~  194 (687)
                      +...++
T Consensus       291 ~~~~~R  296 (304)
T COG3118         291 LVLAYR  296 (304)
T ss_pred             HHHHHH
Confidence            433333

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.21  E-value=2.1e-06  Score=64.36  Aligned_cols=63  Identities=25%  Similarity=0.412  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLS-------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR  130 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  130 (687)
                      ..++..+|.+|...|++++|+.+|++++++.       |....++..+|.++...|++++|+.+++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444555555555555555555555554331       11123344444444444444444444444443

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.20  E-value=7.4e-05  Score=58.68  Aligned_cols=93  Identities=16%  Similarity=0.277  Sum_probs=49.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 005632           73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI----SLRIHLASFYVE  148 (687)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~  148 (687)
                      ..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++-+++++++..+..    .++...|.+|..
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555555555433221    234445555555


Q ss_pred             cCCHHHHHHHHHHHHHh
Q 005632          149 IGDYEKAAESYEQIQKL  165 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~  165 (687)
                      +|+.+.|...|+.+.++
T Consensus       128 ~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  128 LGNDDAARADFEAAAQL  144 (175)
T ss_pred             hCchHHHHHhHHHHHHh
Confidence            55555555555555444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=98.20  E-value=0.0099  Score=60.25  Aligned_cols=366  Identities=13%  Similarity=0.034  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Q 005632           51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-LTFAVQKGDTAQAMYYIRQAI  129 (687)
Q Consensus        51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~  129 (687)
                      +.+...|...|...|-.-..|...|..-.+.|..+.+...|++++.--|-....|..+ +.+-...|+.+.-...|++|.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            5566677777888998888999999999999999999999999999999888888765 444446678888888899998


Q ss_pred             HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHH--
Q 005632          130 RAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC------GQTARSIGILEEYLK--  198 (687)
Q Consensus       130 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~--  198 (687)
                      .....+   ...|-........++++..-...|++.++.--.....++..-.-+...      -..+++...-.....  
T Consensus       142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~  221 (577)
T KOG1258|consen  142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS  221 (577)
T ss_pred             HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence            865543   345666666667888899999999998875332222222111111111      122222222111111  


Q ss_pred             -----------------h--CCCCCcHHHHHHHH-------HHHHHcchHHHHHHHHHHHHHH----hccCCCchHHHHH
Q 005632          199 -----------------V--HPSDADLSVIDLLV-------AILMENNAYEKTLQHIEHAQIV----RFSGKELPLKLKV  248 (687)
Q Consensus       199 -----------------~--~p~~~~~~~~~~la-------~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~  248 (687)
                                       .  .|..........+.       .++.......+.+..++..+..    ..+..+.....|.
T Consensus       222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~  301 (577)
T KOG1258|consen  222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR  301 (577)
T ss_pred             hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence                             0  11111000111111       1222223333444444444433    0122334456677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhh
Q 005632          249 KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK  328 (687)
Q Consensus       249 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  328 (687)
                      .........|+++...-.+++++.... ...+.|...+......|+.+-|-..+.++.+...+..+.+...-+..-...|
T Consensus       302 ~yLdf~i~~g~~~~~~~l~ercli~cA-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~  380 (577)
T KOG1258|consen  302 YYLDFEITLGDFSRVFILFERCLIPCA-LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNG  380 (577)
T ss_pred             HHhhhhhhcccHHHHHHHHHHHHhHHh-hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhc
Confidence            778888899999999999999876655 4889999999999999999999999998888777889999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH---HhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHH-
Q 005632          329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI---TLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY-  404 (687)
Q Consensus       329 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-  404 (687)
                      ++..|...++++.+..|+...+-...+....+.|+.+.+.   +++...........         .....+...++.. 
T Consensus       381 n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~---------i~~~l~~~~~r~~~  451 (577)
T KOG1258|consen  381 NFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG---------ILEKLYVKFARLRY  451 (577)
T ss_pred             cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc---------hhHHHHHHHHHHHH
Confidence            9999999999999988999988888888899999999888   44444333222221         1223445555543 


Q ss_pred             HHcCCchHHHHHHHHHHHHhhh
Q 005632          405 RAKGMPEDFVDAIFPLVCESLC  426 (687)
Q Consensus       405 ~~~g~~~~A~~~~~~~~~~~~~  426 (687)
                      .-.++.+.|...+.+++...+.
T Consensus       452 ~i~~d~~~a~~~l~~~~~~~~~  473 (577)
T KOG1258|consen  452 KIREDADLARIILLEANDILPD  473 (577)
T ss_pred             HHhcCHHHHHHHHHHhhhcCCc
Confidence            4556777787777777765544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.18  E-value=1.9e-05  Score=66.51  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 005632           84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD----------TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD--  151 (687)
Q Consensus        84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~--  151 (687)
                      |+.|.+.++.....+|.+++.+...|.++..+.+          +++|+.-|+.++.++|+..++++.+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            4567777777777777777777777776655433          4455666666666677776777666666655432  


Q ss_pred             ---------HHHHHHHHHHHHHhCCCCH
Q 005632          152 ---------YEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       152 ---------~~~A~~~~~~~~~~~p~~~  170 (687)
                               |++|..+|+++...+|++.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence                     4444444555555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.17  E-value=0.00036  Score=68.62  Aligned_cols=163  Identities=16%  Similarity=0.243  Sum_probs=117.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC--------------------
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK--------------------  100 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------------------  100 (687)
                      .....+..+.+.-++...++++++|+.+++|..++.-  ......+|..+|+++++....                    
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR  252 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence            4445788999999999999999999999999988863  233467777777777654210                    


Q ss_pred             -C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHH
Q 005632          101 -D----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK--DISLRIHLASFYVEIGDYEKAAESYEQIQKL-FPDNVDA  172 (687)
Q Consensus       101 -~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~  172 (687)
                       +    ..+...+|.|..+.|+.++|++.++..++.+|.  +..++.++..++...+.|.++...+.+.-+. -|+....
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti  332 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI  332 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence             0    123457888999999999999999999887775  4567888999999999999998888886443 2455555


Q ss_pred             HHHHHHHHHH-cCC---------------hHHHHHHHHHHHHhCCCCCc
Q 005632          173 TKTGAQLFLK-CGQ---------------TARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       173 ~~~la~~~~~-~g~---------------~~~A~~~~~~~~~~~p~~~~  205 (687)
                      .+..+.+..+ .++               -..|.+.+.++++.+|.-+.
T Consensus       333 ~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  333 CYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             HHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            5544444322 111               13466788888888887664

The molecular function of this protein is uncertain.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.0031  Score=55.49  Aligned_cols=86  Identities=24%  Similarity=0.277  Sum_probs=42.2

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDIS------LRIHLASFYVEI-GDYEKAAESYEQIQKLFPDN------VDATKTGAQLF  180 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~  180 (687)
                      +.++..+|+.++++++++..+-..      .+..+|.+|... .++++|+.+|+++-+.....      ...+...+..-
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya  164 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA  164 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence            334666666666666665433221      233455555433 55555555555555443221      12333444444


Q ss_pred             HHcCChHHHHHHHHHHHHh
Q 005632          181 LKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       181 ~~~g~~~~A~~~~~~~~~~  199 (687)
                      ...++|.+|+..|+++...
T Consensus       165 a~leqY~~Ai~iyeqva~~  183 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARS  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.13  E-value=0.015  Score=59.77  Aligned_cols=334  Identities=14%  Similarity=0.150  Sum_probs=164.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc--------------------cCCCCHH
Q 005632           44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH--------------------LSPKDSA  103 (687)
Q Consensus        44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~  103 (687)
                      ....|+|+.|...++. ++..|+....|..++...+..|+.--|..+|...-.                    ...+-..
T Consensus       454 aid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~  532 (1636)
T KOG3616|consen  454 AIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD  532 (1636)
T ss_pred             ccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence            4568999999887765 567787777888888888888777777666643211                    1111122


Q ss_pred             HHHHHHH-------------HHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005632          104 LWKQLLT-------------FAVQKGDTAQAMYYIRQAIRA-----------EPKDISLRIHLASFYVEIGDYEKAAESY  159 (687)
Q Consensus       104 ~~~~la~-------------~~~~~g~~~~A~~~~~~a~~~-----------~p~~~~~~~~la~~~~~~g~~~~A~~~~  159 (687)
                      .|...+.             ++..++..++|+-.|+..-+-           .|.........-..+...|+-++|-+. 
T Consensus       533 fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~el-  611 (1636)
T KOG3616|consen  533 FYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAEL-  611 (1636)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhh-
Confidence            2222232             334455555555555443221           111111111122222233333222211 


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------CcHHHHHHHHHHHHHcchHHHHHHHH
Q 005632          160 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD----------ADLSVIDLLVAILMENNAYEKTLQHI  229 (687)
Q Consensus       160 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----------~~~~~~~~la~~~~~~~~~~~A~~~~  229 (687)
                            ...+.+.+ ....+|.+.|.+..|......--.+..+.          .....|...|.++.+..++++|+++|
T Consensus       612 ------k~sdgd~l-aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~f  684 (1636)
T KOG3616|consen  612 ------KESDGDGL-AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECF  684 (1636)
T ss_pred             ------ccccCccH-HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHH
Confidence                  11111111 12234555555555443221100000000          00124566777777788888888777


Q ss_pred             HH------HHHHhccCCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHH
Q 005632          230 EH------AQIVRFSGKEL-PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY  302 (687)
Q Consensus       230 ~~------~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  302 (687)
                      ++      ++++..-..|. -..+--.-|..+...|+++.|+..|-.+-.         ......+......+.+|+.++
T Consensus       685 kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il  755 (1636)
T KOG3616|consen  685 KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL  755 (1636)
T ss_pred             HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence            64      33331111221 122333456666777777777777765421         111223334455667777666


Q ss_pred             HHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccC
Q 005632          303 HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDM  382 (687)
Q Consensus       303 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  382 (687)
                      +.+...  ......|-.++.-|...|+++.|.+.|.++-        ....-..+|.+.|+++.|.++-++........ 
T Consensus       756 dniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~~~e~t~-  824 (1636)
T KOG3616|consen  756 DNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECHGPEATI-  824 (1636)
T ss_pred             HHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhcCchhHH-
Confidence            655432  2233344456666667777777777666541        11223455666666666666655544322211 


Q ss_pred             CCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHH
Q 005632          383 NSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIF  418 (687)
Q Consensus       383 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  418 (687)
                                  ..+...+.-+...|++.+|...|.
T Consensus       825 ------------~~yiakaedldehgkf~eaeqlyi  848 (1636)
T KOG3616|consen  825 ------------SLYIAKAEDLDEHGKFAEAEQLYI  848 (1636)
T ss_pred             ------------HHHHHhHHhHHhhcchhhhhheeE
Confidence                        244555555566666666655443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.10  E-value=6e-06  Score=61.89  Aligned_cols=66  Identities=21%  Similarity=0.348  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632          100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA---EP-K---DISLRIHLASFYVEIGDYEKAAESYEQIQKL  165 (687)
Q Consensus       100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p-~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  165 (687)
                      +...++..+|.+|...|++++|+.+|++++++   .+ +   ...++..+|.++...|++++|++++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            33456667777777777777777777777653   11 1   1345666677777777777777777666654

...

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.08  E-value=0.00031  Score=64.96  Aligned_cols=159  Identities=12%  Similarity=0.002  Sum_probs=94.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcC
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL-FPDN---VDATKTGAQLFLKCG  184 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~---~~~~~~la~~~~~~g  184 (687)
                      +.+.+..|++.+|-...++.++..|.+.-++..--.+++..|+...-...+++++-. +|+-   ..+.-.++..+...|
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence            444556667777777777777777777666666666666777777766677766655 4443   233334555666677


Q ss_pred             ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH
Q 005632          185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE  264 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  264 (687)
                      -|++|.+..+++++++|.+.-  +...++.++...|++.++.++..+.-.......-....-+...+.++...+.|+.|+
T Consensus       190 ~y~dAEk~A~ralqiN~~D~W--a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  190 IYDDAEKQADRALQINRFDCW--ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             cchhHHHHHHhhccCCCcchH--HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence            777777777777777766643  455666677777777777766665433211111111122334455555556666666


Q ss_pred             HHHHH
Q 005632          265 ILFAD  269 (687)
Q Consensus       265 ~~~~~  269 (687)
                      .+|.+
T Consensus       268 eIyD~  272 (491)
T KOG2610|consen  268 EIYDR  272 (491)
T ss_pred             HHHHH
Confidence            66654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.06  E-value=1e-05  Score=52.32  Aligned_cols=43  Identities=28%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 005632          314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS  356 (687)
Q Consensus       314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  356 (687)
                      |.++..+|.+|...|++++|++.|+++++.+|+++.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578889999999999999999999999999999999988875

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.06  E-value=0.00013  Score=69.97  Aligned_cols=132  Identities=11%  Similarity=0.108  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ-KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      |..+.....+.+..+.|...|.++....+....+|...|.+.+. .++.+.|...|+.+++..|.+...|......+...
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            33333444444444455555555543333344444444444333 23333355555555555555544444444444455


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632          150 GDYEKAAESYEQIQKLFPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPS  202 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  202 (687)
                      |+.+.|..+|++++..-|...   .+|......-...|+.+....+.+++.+..|+
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            555555555555444433322   23334444444444444444444444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.06  E-value=0.0033  Score=64.99  Aligned_cols=180  Identities=18%  Similarity=0.124  Sum_probs=116.8

Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHH-----HHHHH----HcCCHHH
Q 005632          192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA-----GICYL----RLGNMEK  262 (687)
Q Consensus       192 ~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~----~~~~~~~  262 (687)
                      .|.-++..-|...     ..+..+.--.|+-+.++..+.++.+..+  -....-.+..+     ...+.    .....+.
T Consensus       179 ~f~L~lSlLPp~~-----~kll~~vGF~gdR~~GL~~L~~~~~~~~--i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~  251 (468)
T PF10300_consen  179 LFNLVLSLLPPKV-----LKLLSFVGFSGDRELGLRLLWEASKSEN--IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE  251 (468)
T ss_pred             HHHHHHHhCCHHH-----HHHHhhcCcCCcHHHHHHHHHHHhccCC--cchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence            4555556655432     2344444455777777777777765311  11111111111     11111    2456778


Q ss_pred             HHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc---CCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005632          263 AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA---GTDNGYLYLKLAECYLSLKERAHAIMFFYK  339 (687)
Q Consensus       263 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  339 (687)
                      |..++.......|. ..-..+..|+++...|+.++|++.|++++...   .+-..-.++.++.++..+++|++|..++.+
T Consensus       252 a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~  330 (468)
T PF10300_consen  252 AEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR  330 (468)
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence            88888888888874 77777888888888888888888888766431   122445678888888888999999988888


Q ss_pred             HHHhcCCCHH-HHHHHHHHHHHcCCH-------HHHHHhcCCCCcCCc
Q 005632          340 ALDRFEDNID-ARLTLASLLLEEAKE-------EEAITLLSPPKDLDS  379 (687)
Q Consensus       340 al~~~p~~~~-~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~  379 (687)
                      ..+.+.-... ..+..|.++...|+.       ++|.+++.++-....
T Consensus       331 L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  331 LLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            8887655433 335567788888888       888888887655443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.0012  Score=58.45  Aligned_cols=166  Identities=8%  Similarity=0.098  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHH
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-----PKDISL  138 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p~~~~~  138 (687)
                      .|..-+.+|....+|++|..++.++.+-..++.      .++-..+.+......+.++..+++++..+.     |+....
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm  112 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM  112 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence            344445556666666666666666664332221      223334444555556666666666665532     222222


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCCcHHH
Q 005632          139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTARSIGILEEYLKV----HPSDADLSV  208 (687)
Q Consensus       139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~  208 (687)
                      -...+--....-++++|++.|++++.+...+      .+.+...++++.+...+++|-..+.+-...    ..-......
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~  192 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKA  192 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHH
Confidence            3333333445566777777777776654332      234455666777777777776665553322    111111123


Q ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          209 IDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       209 ~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      +.....++.-..+|..|..+++...++
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence            334445555556777777777766555

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.04  E-value=0.0029  Score=67.08  Aligned_cols=279  Identities=16%  Similarity=0.089  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-----CChHHHHHHHHHHhcc-----CCCCHHHHHHHHHHHHHcC---
Q 005632           50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSAL-----GNHKSAFDFYVIAAHL-----SPKDSALWKQLLTFAVQKG---  116 (687)
Q Consensus        50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g---  116 (687)
                      ...|..+++.+.+.  .+..+...+|.+|..-     .|.+.|+.+|+.+...     .-.++.+.+.+|.+|....   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            56788888887665  4678888889888764     5899999999988761     1124557788899988753   


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChH
Q 005632          117 --DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG---DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC----GQTA  187 (687)
Q Consensus       117 --~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~  187 (687)
                        ++..|+.+|.++....  ++.+.+.+|.++....   ++..|.++|..+...  .+..+.+.++.+|..-    -+..
T Consensus       306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence              6788999999988764  6677888888887765   578999999988765  5778888888888653    4678


Q ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc----CCHHH
Q 005632          188 RSIGILEEYLKVHPSDADLSVIDLLVAILMEN-NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL----GNMEK  262 (687)
Q Consensus       188 ~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~  262 (687)
                      .|..++.++.+..+-.    +...++.++... +.++.+.-.+......-.....................    .+...
T Consensus       382 ~A~~~~k~aA~~g~~~----A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~  457 (552)
T KOG1550|consen  382 LAFAYYKKAAEKGNPS----AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER  457 (552)
T ss_pred             HHHHHHHHHHHccChh----hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence            8999999998877322    233444444332 66666666665554441100111111111111111111    13344


Q ss_pred             HHHHHHHHhhhCchhhHHHHHHHHHHHHhc----CChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh---hcHHHHHH
Q 005632          263 AEILFADLQWKNAIDHADLITEVADTLMSL----GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL---KERAHAIM  335 (687)
Q Consensus       263 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~  335 (687)
                      +...+.++...   .+..+...++.+|...    .+++.|...|..+...  .  +...+++|.++..-   .....|..
T Consensus       458 ~~~~~~~a~~~---g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~--~--~~~~~nlg~~~e~g~g~~~~~~a~~  530 (552)
T KOG1550|consen  458 AFSLYSRAAAQ---GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ--G--AQALFNLGYMHEHGEGIKVLHLAKR  530 (552)
T ss_pred             HHHHHHHHHhc---cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh--h--hHHHhhhhhHHhcCcCcchhHHHHH
Confidence            44445444322   3556666666666554    2577777777766644  2  66777777776641   11566777


Q ss_pred             HHHHHHHhcC
Q 005632          336 FFYKALDRFE  345 (687)
Q Consensus       336 ~~~~al~~~p  345 (687)
                      +|.++.+.+.
T Consensus       531 ~~~~~~~~~~  540 (552)
T KOG1550|consen  531 YYDQASEEDS  540 (552)
T ss_pred             HHHHHHhcCc
Confidence            7777665544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.04  E-value=0.022  Score=58.38  Aligned_cols=239  Identities=17%  Similarity=0.145  Sum_probs=154.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI---------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      .++..|..+|......-.++.|...|-+.-.. |.-.         .--...+.+-.--|++++|.+.|..+-+.   + 
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr---D-  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR---D-  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh---h-
Confidence            35788999988888777777777776655321 1110         00123455555668899998888665332   1 


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 005632          171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA  250 (687)
Q Consensus       171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  250 (687)
                          ....++...|+|-...++++..-.-..+.....++..+|..+.....+++|.++|...-..            -..
T Consensus       765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~  828 (1189)
T KOG2041|consen  765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQ  828 (1189)
T ss_pred             ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhH
Confidence                2234566778887777666543222222222357889999999999999999999886543            246


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcH
Q 005632          251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKER  330 (687)
Q Consensus       251 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  330 (687)
                      ..+++...++++-..+.+.+    | ++...+-.+|..+...|.-++|.+.|-+..   .|..+      ......++++
T Consensus       829 ~ecly~le~f~~LE~la~~L----p-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~pkaA------v~tCv~LnQW  894 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTL----P-EDSELLPVMADMFTSVGMCDQAVEAYLRRS---LPKAA------VHTCVELNQW  894 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhc----C-cccchHHHHHHHHHhhchHHHHHHHHHhcc---CcHHH------HHHHHHHHHH
Confidence            67777777777655554444    4 477788899999999999999999884322   33211      1245567788


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC
Q 005632          331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK  375 (687)
Q Consensus       331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  375 (687)
                      .+|.+..++.-  -|.-.......+.-+...++.-+|++...++-
T Consensus       895 ~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka~  937 (1189)
T KOG2041|consen  895 GEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKAG  937 (1189)
T ss_pred             HHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhcc
Confidence            88888766531  23323333334555667788888888877664

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.03  E-value=0.002  Score=57.08  Aligned_cols=119  Identities=16%  Similarity=0.084  Sum_probs=75.9

Q ss_pred             HHcCCHHHHHHHHHHHhhhCch-----hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-----cCCCcHHHHHHHHHHH
Q 005632          255 LRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYLYLKLAECY  324 (687)
Q Consensus       255 ~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~  324 (687)
                      ....++++|+++|++.+.....     ...+.+...++++.....+.+|-..+.+-...     ..+.....+.....+|
T Consensus       121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~  200 (308)
T KOG1585|consen  121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY  200 (308)
T ss_pred             hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence            3445666777777765432111     13345566677888888888887777653322     1233444566666677


Q ss_pred             HHhhcHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCC
Q 005632          325 LSLKERAHAIMFFYKALDR----FEDNIDARLTLASLLLEEAKEEEAITLLSPP  374 (687)
Q Consensus       325 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  374 (687)
                      +...+|..|..+++...++    .|++..+..+|-..| ..|+.++..+++...
T Consensus       201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~sp  253 (308)
T KOG1585|consen  201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSSP  253 (308)
T ss_pred             hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcCh
Confidence            7778999999999987665    344555666666555 678888888887643

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.02  E-value=0.00012  Score=70.05  Aligned_cols=134  Identities=13%  Similarity=0.152  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE-IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      +|..+.....+.+..+.|..+|.++.+..+-...+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            577777778888889999999999986666677888888988666 5666669999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc
Q 005632          183 CGQTARSIGILEEYLKVHPSDA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF  237 (687)
Q Consensus       183 ~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  237 (687)
                      .|+.+.|..+|++++..-|... ...+|......-...|+.+....+.+++.+.++
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP  138 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999998876665 445788888888888999988888888888744

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.01  E-value=0.00073  Score=66.50  Aligned_cols=195  Identities=12%  Similarity=0.082  Sum_probs=121.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch
Q 005632          142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA  221 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~  221 (687)
                      +..-..+..++..-++.-.++++++|+..+++..|+.-.  ..-..+|..+++++++.......      ........|.
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg------~s~~~~~~g~  245 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLG------KSQFLQHHGH  245 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhc------hhhhhhcccc
Confidence            334444556666667777777777777766666665421  22355666666666554322111      0000011111


Q ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-hhHHHHHHHHHHHHhcCChHHHHH
Q 005632          222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSNSALK  300 (687)
Q Consensus       222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~  300 (687)
                      .-+.       ..  ..+......+...++.|..+.|+.++|++.++.+++..|. +...+..++..++...+.|.++..
T Consensus       246 ~~e~-------~~--~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  246 FWEA-------WH--RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             hhhh-------hh--ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence            1110       00  0011223455677899999999999999999999887765 467789999999999999999999


Q ss_pred             HHHHhhhccCCCcHHHHHHHHHHHHH-hhc---------------HHHHHHHHHHHHHhcCCCHHHHHH
Q 005632          301 YYHFLETNAGTDNGYLYLKLAECYLS-LKE---------------RAHAIMFFYKALDRFEDNIDARLT  353 (687)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~  353 (687)
                      ++.+.-+..-|..+...+..|.+-.+ .++               -..|++.+.+|++.+|.-+..++.
T Consensus       317 lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe  385 (539)
T PF04184_consen  317 LLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE  385 (539)
T ss_pred             HHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence            99887655456677666666554332 122               134678899999999988765543

The molecular function of this protein is uncertain.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=6.7e-05  Score=65.83  Aligned_cols=92  Identities=17%  Similarity=0.121  Sum_probs=73.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA  187 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  187 (687)
                      -|..++....|..|+.+|.+++.++|..+..+.+.+.++++..+++.+....++++++.|+....++.+|........|+
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            35556666778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHh
Q 005632          188 RSIGILEEYLKV  199 (687)
Q Consensus       188 ~A~~~~~~~~~~  199 (687)
                      +|+..+.++..+
T Consensus        96 eaI~~Lqra~sl  107 (284)
T KOG4642|consen   96 EAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHHH
Confidence            888888887554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.00  E-value=1.4e-05  Score=51.62  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      +..+|..|...|++++|+..|+++++.+|+++.++..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            33344444444444444444444444444444444333

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.95  E-value=0.03  Score=56.89  Aligned_cols=315  Identities=12%  Similarity=0.068  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 005632           85 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY-VEIGDYEKAAESYEQIQ  163 (687)
Q Consensus        85 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~  163 (687)
                      +.+...|...+...|.....|...|..-.+.|..+.+...|++++.--|.+...|..+-... ...|+.+.-...|+++.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~  141 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK  141 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            55666677777778888888999999999999999999999999998888877776644333 45677777788888888


Q ss_pred             HhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC
Q 005632          164 KLFPDN---VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK  240 (687)
Q Consensus       164 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  240 (687)
                      .....+   ...|-........++++..-..+|++.++.--....  .++..-.-+.... ...-+-.++++.+...+..
T Consensus       142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~--~~f~~f~~~l~~~-~~~~l~~~d~~~~l~~~~~  218 (577)
T KOG1258|consen  142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN--RHFDRFKQLLNQN-EEKILLSIDELIQLRSDVA  218 (577)
T ss_pred             HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH--HHHHHHHHHHhcC-ChhhhcCHHHHHHHhhhHH
Confidence            776543   345555556667778888888888888775322211  1111111111110 0111111111111100000


Q ss_pred             -----C---chHHHHH-HHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc--
Q 005632          241 -----E---LPLKLKV-KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA--  309 (687)
Q Consensus       241 -----~---~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--  309 (687)
                           +   .....+- ..-.+--..+..+++...+.+           .....=.++.......+.+-.++..+...  
T Consensus       219 ~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~-----------~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYf  287 (577)
T KOG1258|consen  219 ERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKR-----------IVSIHEKVYQKSEEEEEKRWGFEEGIKRPYF  287 (577)
T ss_pred             hhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHH-----------HHHHHHHHHHhhHhHHHHHHhhhhhcccccc
Confidence                 0   0000000 000000000111111111111           11111223333344555555666555431  


Q ss_pred             -----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCC
Q 005632          310 -----GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS  384 (687)
Q Consensus       310 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  384 (687)
                           .+.....|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.+....... 
T Consensus       288 hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~-  366 (577)
T KOG1258|consen  288 HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP-  366 (577)
T ss_pred             ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc-
Confidence                 12234566667777788999999999999999888888999999999999999999999888888776554432 


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       385 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                                .+...-+.+-...|++..|...++.+.++.
T Consensus       367 ----------~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~  396 (577)
T KOG1258|consen  367 ----------IIHLLEARFEESNGNFDDAKVILQRIESEY  396 (577)
T ss_pred             ----------HHHHHHHHHHHhhccHHHHHHHHHHHHhhC
Confidence                      467777788888999999999888888765

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.95  E-value=1.7e-05  Score=77.24  Aligned_cols=110  Identities=18%  Similarity=0.220  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      +=.+|..++..+.|+.|+..|.++++++|+++..+...+..+.+.+++..|+..+.++++.+|....+|+..|.+.+..+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            34567888888899999999999999999888888888888899999999999999999999988888888899999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      .+.+|...|++...+.|+++.+...+..+-
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            999999999999999998888776665553

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.92  E-value=0.0044  Score=60.43  Aligned_cols=118  Identities=18%  Similarity=0.170  Sum_probs=67.6

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHL----SPKDSALWKQLLTFAVQ---KGDTAQAMYYIRQ-AIRAEPKDISL  138 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-a~~~~p~~~~~  138 (687)
                      .+++...+-.+|....+|+.-+...+..-.+    -++.+.+...+|-++.+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3445556666666777777777666665554    34455556666666666   6777777777766 33344556666


Q ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632          139 RIHLASFYVEI---------GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ  185 (687)
Q Consensus       139 ~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  185 (687)
                      +..+|.+|-..         ...++|+..|.++.+.+|+. ..-.+++.++...|.
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~  274 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH  274 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence            66666666431         23455666666666665432 223344444444443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.042  Score=59.03  Aligned_cols=323  Identities=16%  Similarity=0.119  Sum_probs=169.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPN---LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD  117 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  117 (687)
                      ...++..+-..+-++++++++-.+.-   +......+..... .-+.....++..+.-..+..      .+|.+....+-
T Consensus       991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyDa~------~ia~iai~~~L 1063 (1666)
T KOG0985|consen  991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYDAP------DIAEIAIENQL 1063 (1666)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCCch------hHHHHHhhhhH
Confidence            44566677777888888887643321   2222222222222 23444555555554333321      24555566666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632          118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL  197 (687)
Q Consensus       118 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  197 (687)
                      |++|...|++.-    -+..+...   +....+..+.|.++-+++     +.+.+|..+|......|...+|++.|-++ 
T Consensus      1064 yEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred             HHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence            777777666531    12222111   122344555555555443     44566777777777777777777666543 


Q ss_pred             HhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh
Q 005632          198 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID  277 (687)
Q Consensus       198 ~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  277 (687)
                          +++.  .+.....+..+.|.|++-+.++.-+.+...     .+.+-..+..+|.+.++..+-...+    .. |  
T Consensus      1131 ----dDps--~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-----E~~id~eLi~AyAkt~rl~elE~fi----~g-p-- 1192 (1666)
T KOG0985|consen 1131 ----DDPS--NYLEVIDVASRTGKYEDLVKYLLMARKKVR-----EPYIDSELIFAYAKTNRLTELEEFI----AG-P-- 1192 (1666)
T ss_pred             ----CCcH--HHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-----CccchHHHHHHHHHhchHHHHHHHh----cC-C--
Confidence                2222  355666666667777777666666655421     1112223334444455443322221    11 1  


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------------
Q 005632          278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDR--------------  343 (687)
Q Consensus       278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------  343 (687)
                      +..-....|.-++..|.|+.|.-+|..+.         -|..++..+..+|+|..|....+++-..              
T Consensus      1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred             CchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence            22233445555555555555555543221         2344555555555555555554443211              


Q ss_pred             -------cC----CCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchH
Q 005632          344 -------FE----DNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPED  412 (687)
Q Consensus       344 -------~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  412 (687)
                             ..    -+.+-+-.+...|...|-+++-+.+++.++-......            ..+..||.+|.+ =++++
T Consensus      1264 EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM------------gmfTELaiLYsk-ykp~k 1330 (1666)
T KOG0985|consen 1264 EFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM------------GMFTELAILYSK-YKPEK 1330 (1666)
T ss_pred             hhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH------------HHHHHHHHHHHh-cCHHH
Confidence                   00    1244556688888999999999999998887766543            256667776643 34666


Q ss_pred             HHHHHHHHHHH
Q 005632          413 FVDAIFPLVCE  423 (687)
Q Consensus       413 A~~~~~~~~~~  423 (687)
                      -.+.++-.+.+
T Consensus      1331 m~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1331 MMEHLKLFWSR 1341 (1666)
T ss_pred             HHHHHHHHHHh
Confidence            66666655544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=0.00099  Score=61.20  Aligned_cols=152  Identities=13%  Similarity=0.036  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-SLRIHLASFY  146 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~  146 (687)
                      .+.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....... .........+
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll  213 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL  213 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            345566677788899999999999999999999999999999999999999999888876443322221 1111112333


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN  220 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~  220 (687)
                      .+.....+. ..+++-+..+|++.++.+.+|..+...|+.++|.+.+-..++.+-...+..+...+..++...|
T Consensus       214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            333333322 2345566779999999999999999999999999999999888765544334444555554444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.88  E-value=1.8e-05  Score=47.41  Aligned_cols=34  Identities=35%  Similarity=0.431  Sum_probs=30.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632          336 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAIT  369 (687)
Q Consensus       336 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  369 (687)
                      +|+++++++|+++.+++++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999863

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.88  E-value=0.03  Score=54.49  Aligned_cols=377  Identities=12%  Similarity=0.056  Sum_probs=221.6

Q ss_pred             CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      ...|.++..+|++...+-.+|.+++-.+.+++...-.|-.+.+|...-..-+..+++......|.+.+...-+ .+.|..
T Consensus        36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~l  114 (660)
T COG5107          36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWML  114 (660)
T ss_pred             hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHH
Confidence            4557788889999999999999999999999998888887777776666666678888888888888764432 455544


Q ss_pred             HHHHHHHcC-----C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCC
Q 005632          108 LLTFAVQKG-----D----TAQAMYYIRQAIRAEPKDISLRIHLASFYVE---------IGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       108 la~~~~~~g-----~----~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      .-..-.+.+     +    .-+|.+..-.+.-.+|.....|...+..+..         +.+.+.-...|.+++..--++
T Consensus       115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n  194 (660)
T COG5107         115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN  194 (660)
T ss_pred             HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence            433333322     1    2233333333334567777778777766543         334566677788887653333


Q ss_pred             HH-HHHHHHH---------HHH----HcCChHHHHHHHHHHHHhC-------CCCC------------c-----------
Q 005632          170 VD-ATKTGAQ---------LFL----KCGQTARSIGILEEYLKVH-------PSDA------------D-----------  205 (687)
Q Consensus       170 ~~-~~~~la~---------~~~----~~g~~~~A~~~~~~~~~~~-------p~~~------------~-----------  205 (687)
                      .+ .|...-.         .--    ..--|-.|...+++...+.       |.+.            .           
T Consensus       195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en  274 (660)
T COG5107         195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN  274 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence            21 1111100         000    0111334444444443321       1000            0           


Q ss_pred             ---------------------------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632          206 ---------------------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG  258 (687)
Q Consensus       206 ---------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  258 (687)
                                                 .++|+.........++-+.|+....+....       .+.+.+.++.+|....
T Consensus       275 ~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~-------spsL~~~lse~yel~n  347 (660)
T COG5107         275 GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM-------SPSLTMFLSEYYELVN  347 (660)
T ss_pred             CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-------CCchheeHHHHHhhcc
Confidence                                       012333333334445555666555555433       3336667777777766


Q ss_pred             CHHHHHHHHHHHhhhC------------------chhhHH-----------HHHHHHHHHHhcCChHHHHHHHHHhhhcc
Q 005632          259 NMEKAEILFADLQWKN------------------AIDHAD-----------LITEVADTLMSLGHSNSALKYYHFLETNA  309 (687)
Q Consensus       259 ~~~~A~~~~~~~~~~~------------------~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~~~~~~  309 (687)
                      +-+....+|+++...-                  +...++           ++........+..-.+.|..+|.++.+..
T Consensus       348 d~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~  427 (660)
T COG5107         348 DEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEG  427 (660)
T ss_pred             cHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccC
Confidence            6666666555532210                  100111           12222333344555778888888877552


Q ss_pred             CCCcHHHHHHHHH-HHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCC
Q 005632          310 GTDNGYLYLKLAE-CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSN  388 (687)
Q Consensus       310 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  388 (687)
                       -....++..-|. -+...|++..|-..|+-.+...|+++......-..+...|+-..|..+|+.++..-....      
T Consensus       428 -~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q------  500 (660)
T COG5107         428 -IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ------  500 (660)
T ss_pred             -CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh------
Confidence             123333333333 355678999999999999999999988777788888899999999999997765433221      


Q ss_pred             hhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632          389 PWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       389 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  423 (687)
                          --+++-.+...-..-|+...+...-+++...
T Consensus       501 ----~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         501 ----LKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             ----hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence                1135566666666777777766554544433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.83  E-value=0.067  Score=57.07  Aligned_cols=304  Identities=16%  Similarity=0.075  Sum_probs=182.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP-----KDISLRIH  141 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~  141 (687)
                      ++.+..-+..+...|...+|++..-.+  -+|... ......+.-++..++..    .+...+..-|     .+|.....
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll  420 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL  420 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence            566777777777888888888765444  122211 12223333444444433    2333333333     34556677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---HHHH
Q 005632          142 LASFYVEIGDYEKAAESYEQIQKLFPD--N-------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---LSVI  209 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~  209 (687)
                      .+.......++.+|..++.++...-+.  .       ....-..|.+....|++++|++..+.++..-|.+..   ..+.
T Consensus       421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~  500 (894)
T COG2909         421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL  500 (894)
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence            788888899999999999888776443  1       234445678888999999999999999998776643   2356


Q ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHHcCCHHH--HHHHHHHHhhh----CchhhHHH
Q 005632          210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKE--LPLKLKVKAGICYLRLGNMEK--AEILFADLQWK----NAIDHADL  281 (687)
Q Consensus       210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~~----~~~~~~~~  281 (687)
                      ..++.+..-.|++++|..+...+.+.....+.  ....+....+.++..+|+...  ....+......    .+. ..-.
T Consensus       501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~-~~f~  579 (894)
T COG2909         501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR-HEFL  579 (894)
T ss_pred             hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc-chhH
Confidence            67899999999999999999988876332222  334455556778888884333  33333332221    111 1111


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhc-----cCCCcHHH-HHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC---HH---
Q 005632          282 ITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYL-YLKLAECYLSLKERAHAIMFFYKALDRFEDN---ID---  349 (687)
Q Consensus       282 ~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~---  349 (687)
                      ....+.++...-+++.+..-....+..     ..|....+ ++.++.++...|++++|...+..........   +.   
T Consensus       580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a  659 (894)
T COG2909         580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA  659 (894)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence            122222222222244444333332222     12222322 2489999999999999999999887763322   11   


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHhcCCCCcCC
Q 005632          350 -ARLTLASLLLEEAKEEEAITLLSPPKDLD  378 (687)
Q Consensus       350 -~~~~la~~~~~~g~~~~A~~~~~~a~~~~  378 (687)
                       +..........+|+..+|.....+....+
T Consensus       660 ~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~  689 (894)
T COG2909         660 AAYKVKLILWLAQGDKELAAEWLLKSGDPD  689 (894)
T ss_pred             HHHHhhHHHhcccCCHHHHHHHHHhccCch
Confidence             11222334456799999988888755443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.82  E-value=0.00094  Score=66.50  Aligned_cols=117  Identities=14%  Similarity=0.037  Sum_probs=93.8

Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           89 DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI--SLRIHLASFYVEIGDYEKAAESYEQIQKLF  166 (687)
Q Consensus        89 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  166 (687)
                      .....+++..|.+...+..-+..+...|+..+|..++..++-..|...  .++..+|.++.+.|...+|--.+..++.-.
T Consensus       200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            344556666666655555555556678999999999999999876543  468889999999999999999998888777


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       167 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      |.-..-++.++.++...|++......|..+.+..|....
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            766666889999999999999999999999988887543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.78  E-value=0.011  Score=62.79  Aligned_cols=277  Identities=19%  Similarity=0.128  Sum_probs=193.1

Q ss_pred             hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC---
Q 005632           84 HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-----GDTAQAMYYIRQAIRA-----EPKDISLRIHLASFYVEIG---  150 (687)
Q Consensus        84 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~g---  150 (687)
                      ...|..+++.+...  .+..+...+|.++..-     .+.+.|+.+|+.+...     .-.++.+.+.+|.+|....   
T Consensus       228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence            46788888887654  4677788888887654     5899999999998771     1125557888999998853   


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc----ch
Q 005632          151 --DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG---QTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN----NA  221 (687)
Q Consensus       151 --~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~----~~  221 (687)
                        ++..|+.+|.++...  +++.+.+.+|.++....   ++..|..+|..+....-.    .+.+.++.+|..-    .+
T Consensus       306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~----~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI----LAIYRLALCYELGLGVERN  379 (552)
T ss_pred             cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhCCCcCCC
Confidence              678899999999877  56788889999988766   578999999998765422    2677888877653    57


Q ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhCch---hhHHHHHHHHHHHHh----cC
Q 005632          222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL-GNMEKAEILFADLQWKNAI---DHADLITEVADTLMS----LG  293 (687)
Q Consensus       222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~---~~~~~~~~la~~~~~----~g  293 (687)
                      ...|..+++++...    .  .+.+...++.++... +.++.+...+.........   .+...+.........    ..
T Consensus       380 ~~~A~~~~k~aA~~----g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~  453 (552)
T KOG1550|consen  380 LELAFAYYKKAAEK----G--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS  453 (552)
T ss_pred             HHHHHHHHHHHHHc----c--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence            89999999999987    3  334444444444333 7777776666654333211   111111111111111    12


Q ss_pred             ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh----hcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHH
Q 005632          294 HSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL----KERAHAIMFFYKALDRFEDNIDARLTLASLLLEE---AKEEE  366 (687)
Q Consensus       294 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~  366 (687)
                      +...+...+.++.   ...++.+...+|.+|..-    .+++.|...|..+....   ....+++|.++..-   .....
T Consensus       454 ~~~~~~~~~~~a~---~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~  527 (552)
T KOG1550|consen  454 TLERAFSLYSRAA---AQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHL  527 (552)
T ss_pred             chhHHHHHHHHHH---hccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHH
Confidence            4556666666555   456788888999988865    35999999999998776   88899999988652   12688


Q ss_pred             HHHhcCCCCcCCcc
Q 005632          367 AITLLSPPKDLDSL  380 (687)
Q Consensus       367 A~~~~~~a~~~~~~  380 (687)
                      |..++.++...+..
T Consensus       528 a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  528 AKRYYDQASEEDSR  541 (552)
T ss_pred             HHHHHHHHHhcCch
Confidence            88888887766553

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.78  E-value=2.6e-05  Score=46.65  Aligned_cols=32  Identities=31%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHHcCChHHHH
Q 005632           57 LKEVVRLSPNLPETYNTLGLAHSALGNHKSAF   88 (687)
Q Consensus        57 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~   88 (687)
                      |+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            55666666666666666666666666666654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.78  E-value=0.017  Score=58.19  Aligned_cols=292  Identities=17%  Similarity=0.101  Sum_probs=151.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCChHHHHHHHHHHhccC--------CCCHHHHHHHHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--------PKDSALWKQLLTF  111 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~  111 (687)
                      +.+..+.|+++.    +.+.+...+ +.++..+..+......|+++++..+.+++...-        +......+..-..
T Consensus         5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~   80 (352)
T PF02259_consen    5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK   80 (352)
T ss_pred             HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            567788899988    333333333 234667777777778899999888888776542        1111111111111


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh----CCCCHHHHHHHHHHHH
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHLASFYVEIGDYE--KAAESYEQIQKL----FPDNVDATKTGAQLFL  181 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~----~p~~~~~~~~la~~~~  181 (687)
                      +....+.+++..+....... +..    ...|...-..  ...+++  +-+-.++..+-.    .......+...+.+..
T Consensus        81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            11222333333333111100 000    0011111000  011111  111111222111    3345677888899999


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHcchHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHcC
Q 005632          182 KCGQTARSIGILEEYLKVHPSDA--DLSVIDLLVAILMENNAYEKTLQHIEHAQI-VRFSGKELPLKLKVKAGICYLRLG  258 (687)
Q Consensus       182 ~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~  258 (687)
                      +.|.++.|...+.++....+...  ...+....+.+....|+..+|+..++..+. ................+..+    
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----  233 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE----  233 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----
Confidence            99999999999998887653221  223566788889999999999998888887 21111000000000000000    


Q ss_pred             CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhc------CChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhc---
Q 005632          259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSL------GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKE---  329 (687)
Q Consensus       259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---  329 (687)
                      ..+....  .............++..+|......      +..++++..|..+... .|.....|+..|..+...-+   
T Consensus       234 ~~~~~~~--~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~k~~~~~a~~~~~~~~~~~  310 (352)
T PF02259_consen  234 SLEVISS--TNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-DPSWEKAWHSWALFNDKLLESDP  310 (352)
T ss_pred             ccccccc--cchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHhhh
Confidence            0000000  0000011122455666667766666      7788888888888876 67777777777776654322   


Q ss_pred             --------------HHHHHHHHHHHHHhcCC
Q 005632          330 --------------RAHAIMFFYKALDRFED  346 (687)
Q Consensus       330 --------------~~~A~~~~~~al~~~p~  346 (687)
                                    ...|+..|-+++...+.
T Consensus       311 ~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  311 REKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                          13366666677766665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00077  Score=59.53  Aligned_cols=113  Identities=16%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW  105 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  105 (687)
                      +..+-++|+.++..|+|.+|...|..++..        .|..++.                        ++++......+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW------------------------~eLdk~~tpLl  233 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW------------------------LELDKMITPLL  233 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH------------------------HHHHHhhhHHH
Confidence            445567788888888888888888877542        2322221                        01111123345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      .++..|+...|+|-++++....++..+|.+..+++..|.+....=+.++|...|.++++++|.-.
T Consensus       234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            56666666666666666666666666666666666666666666666666666666666666543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.76  E-value=0.0015  Score=63.50  Aligned_cols=177  Identities=15%  Similarity=0.106  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC---chhhHHHHHHHHHHHHh---cCChHHHHHHHHHhhhccCCCcHHHH
Q 005632          244 LKLKVKAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMS---LGHSNSALKYYHFLETNAGTDNGYLY  317 (687)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~  317 (687)
                      ..+...+-..|....+|+.-+.+.+.+....   ....+.+....|.++.+   .|+.++|+..+..++....+.+++++
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            3444444455555556665555555543320   11244455555666655   66666666666664444455566666


Q ss_pred             HHHHHHHHHh---------hcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCC----cCCcccCCC
Q 005632          318 LKLAECYLSL---------KERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPK----DLDSLDMNS  384 (687)
Q Consensus       318 ~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----~~~~~~~~~  384 (687)
                      ..+|.+|...         ...++|+..|.++.+.+|+. -.-.+++.++...|...+...-+.+..    ..-......
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~  299 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL  299 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence            6666665432         23788999999999988653 334556666666665332221111111    000011112


Q ss_pred             CCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 005632          385 DKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL  425 (687)
Q Consensus       385 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  425 (687)
                      +..+.+|    ....++.+..-.|++++|+..++++++..+
T Consensus       300 ~~~~dYW----d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  300 EKMQDYW----DVATLLEASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             cccccHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence            3345677    677788888889999999999999987653

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=0.0012  Score=58.48  Aligned_cols=103  Identities=21%  Similarity=0.211  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIR--------AEPKDI----------SLRIHLASFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~~  164 (687)
                      .++..-|+-++..|+|.+|...|+.++.        ..|.++          ..+.+++.|+...|+|-++++.....+.
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~  258 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR  258 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence            4567778889999999999999998865        245544          3577889999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      ..|.+..+++..|......=+.++|..-|..+++++|.-..
T Consensus       259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            99999999999999999999999999999999999987654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.65  E-value=0.073  Score=52.13  Aligned_cols=130  Identities=12%  Similarity=-0.001  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP-----ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      -+..+|..+..++++++|.+.|.++.+...+.+     +++..+....+-+++.+.-...+...-+..|..+....-.|.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            345679999999999999999999987655443     334444444455677777777777666777877777778888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLASFYVEIGDYEKAAESYEQIQKL  165 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  165 (687)
                      ..++.+++.+|++.+..-...-...               ...-...+.++...|.+.++...+++.+..
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            8899999999998887665431111               011223577788888888888888887754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.64  E-value=0.14  Score=55.42  Aligned_cols=324  Identities=18%  Similarity=0.134  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHHHHhCCC----chHHHHHHHHHHH-HcCChHHHHHHHHHHhccCC--CCH----HHHHHHHHHHHHcCCH
Q 005632           50 FEQAISLLKEVVRLSPN----LPETYNTLGLAHS-ALGNHKSAFDFYVIAAHLSP--KDS----ALWKQLLTFAVQKGDT  118 (687)
Q Consensus        50 ~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~  118 (687)
                      ...|+.+++-+++..+-    .+.+++.+|.+++ ...+++.|..++.+++.+..  +..    ...+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            34567777777742221    3557889999988 68899999999999987763  322    2345678888888877


Q ss_pred             HHHHHHHHHHHHhCCC---C-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCh
Q 005632          119 AQAMYYIRQAIRAEPK---D-ISLRIHL--ASFYVEIGDYEKAAESYEQIQKLF--PDNVDA----TKTGAQLFLKCGQT  186 (687)
Q Consensus       119 ~~A~~~~~~a~~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~----~~~la~~~~~~g~~  186 (687)
                      . |...+++.++....   . ....+.+  ...+...+++..|++.++......  +.++.+    ....+.+....+..
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            7 99999998886543   2 2222222  333333479999999999998875  345433    23345666777888


Q ss_pred             HHHHHHHHHHHHhC------CCC--CcHHHHHHHHH--HHHHcchHHHHHHHHHHHHHHh---ccCC-------------
Q 005632          187 ARSIGILEEYLKVH------PSD--ADLSVIDLLVA--ILMENNAYEKTLQHIEHAQIVR---FSGK-------------  240 (687)
Q Consensus       187 ~~A~~~~~~~~~~~------p~~--~~~~~~~~la~--~~~~~~~~~~A~~~~~~~~~~~---~~~~-------------  240 (687)
                      +++++.++++....      |+.  +...++..+..  ++...|+++.+...+++.-...   ....             
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l  275 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL  275 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence            88888888874431      222  11223444333  4456677777766655543321   1100             


Q ss_pred             ------------Cc----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh---------------------
Q 005632          241 ------------EL----------PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID---------------------  277 (687)
Q Consensus       241 ------------~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------  277 (687)
                                  +.          ..-+++.-|......+..++|.+++++++..-...                     
T Consensus       276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~  355 (608)
T PF10345_consen  276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW  355 (608)
T ss_pred             ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence                        00          01233344556667777767777777754321100                     


Q ss_pred             ----hHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc--CC------CcHHHHHHHHHHHHHhhcHHHHHHHHH-------
Q 005632          278 ----HADLITEVADTLMSLGHSNSALKYYHFLETNA--GT------DNGYLYLKLAECYLSLKERAHAIMFFY-------  338 (687)
Q Consensus       278 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~------~~~~~~~~la~~~~~~g~~~~A~~~~~-------  338 (687)
                          ........+...+-.+++..|...++.+....  .|      ..+.+++..|..+...|+.+.|...|.       
T Consensus       356 ~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~  435 (608)
T PF10345_consen  356 LRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLC  435 (608)
T ss_pred             HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhh
Confidence                11234456677788999999999998776541  12      257788999999999999999999998       


Q ss_pred             -HHHHhcCCC---HHHHHHHHHHHHHcCCHHH----HHHhcCCC
Q 005632          339 -KALDRFEDN---IDARLTLASLLLEEAKEEE----AITLLSPP  374 (687)
Q Consensus       339 -~al~~~p~~---~~~~~~la~~~~~~g~~~~----A~~~~~~a  374 (687)
                       .+....+.+   .-+..++..++...+....    +.+.++..
T Consensus       436 ~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i  479 (608)
T PF10345_consen  436 EAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQI  479 (608)
T ss_pred             hhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhc
Confidence             333333333   2234566777776665332    44454433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.64  E-value=9.1e-05  Score=72.32  Aligned_cols=110  Identities=19%  Similarity=0.214  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      +-..+...+.-++++.|+..|.++++++|+.+..+...+..+...+++..|+.-+.++++.+|....+++..|.+....+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            33445666777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          151 DYEKAAESYEQIQKLFPDNVDATKTGAQLF  180 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  180 (687)
                      .+.+|...|+....+.|+++.+...+..+-
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            888888888888888888887776665553

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.59  E-value=0.17  Score=54.92  Aligned_cols=275  Identities=18%  Similarity=0.056  Sum_probs=180.0

Q ss_pred             CCCCh--hHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCC--Cch----HHHHHHHHHHHHcCChHHHHHHHHHHhccC
Q 005632           28 NKLSP--GVTKMLGEASLQY-AYGNFEQAISLLKEVVRLSP--NLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHLS   98 (687)
Q Consensus        28 ~~~~~--~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p--~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   98 (687)
                      .+++|  ++...+..|.+++ ...+++.|..++++++.+..  +..    .+.+.++.++.+.+... |...+++.++..
T Consensus        51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~  129 (608)
T PF10345_consen   51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS  129 (608)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence            34555  5666788899988 78999999999999987753  322    34567788888888777 999999988765


Q ss_pred             CC---CHHH-HHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           99 PK---DSAL-WKQL--LTFAVQKGDTAQAMYYIRQAIRAE--PKDISL----RIHLASFYVEIGDYEKAAESYEQIQKLF  166 (687)
Q Consensus        99 p~---~~~~-~~~l--a~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~  166 (687)
                      .+   .... .+.+  .......+++..|++.++......  +.++.+    ....+.+....+..+++++.++++....
T Consensus       130 ~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~  209 (608)
T PF10345_consen  130 ETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA  209 (608)
T ss_pred             hccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence            43   2222 2222  333333489999999999988765  355443    3334666677888888998888885432


Q ss_pred             C----------CCHHHHHHHHH--HHHHcCChHHHHHHHHHHH---Hh---CC---C---C-----------------Cc
Q 005632          167 P----------DNVDATKTGAQ--LFLKCGQTARSIGILEEYL---KV---HP---S---D-----------------AD  205 (687)
Q Consensus       167 p----------~~~~~~~~la~--~~~~~g~~~~A~~~~~~~~---~~---~p---~---~-----------------~~  205 (687)
                      .          ....++..+-.  ++...|+++.+...++++-   +.   .+   .   +                 +.
T Consensus       210 ~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~  289 (608)
T PF10345_consen  210 RSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPL  289 (608)
T ss_pred             hhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCcee
Confidence            1          12344444433  4466777777766655443   22   11   0   0                 00


Q ss_pred             ---H--------HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC-------Cc---------------hHHHHHHHHH
Q 005632          206 ---L--------SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK-------EL---------------PLKLKVKAGI  252 (687)
Q Consensus       206 ---~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~---------------~~~~~~~l~~  252 (687)
                         +        -++..-|......+..++|.++++++++......       +.               ...+.+..+.
T Consensus       290 ~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~  369 (608)
T PF10345_consen  290 VFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIW  369 (608)
T ss_pred             EEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence               0        1222334455666777788888888887632111       00               1123445677


Q ss_pred             HHHHcCCHHHHHHHHHHHhhhC---c-----hhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632          253 CYLRLGNMEKAEILFADLQWKN---A-----IDHADLITEVADTLMSLGHSNSALKYYH  303 (687)
Q Consensus       253 ~~~~~~~~~~A~~~~~~~~~~~---~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~  303 (687)
                      +..-.+++..+...++.+....   |     ...+..++..|..+...|+.+.|...|.
T Consensus       370 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  370 CNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            7788899999999988775432   1     1246778899999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.59  E-value=0.00015  Score=43.79  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632          314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN  347 (687)
Q Consensus       314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  347 (687)
                      +.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.56  E-value=0.22  Score=55.44  Aligned_cols=370  Identities=11%  Similarity=0.045  Sum_probs=215.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHc----C---ChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSAL----G---NHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      -.+++....|+.|+..|+++-...|+.   .++.+..|.....+    |   .+++|+..|++... .|.-|--|...|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence            456677889999999999999999875   45778888877653    3   47788888887643 4666777888899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---------
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIH-------LASFYVEIGDYEKAAESYEQIQKLFPDNVDATK---------  174 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---------  174 (687)
                      +|.+.|++++-+++|.-+++..|..|..-..       +-.+...  +-..|....--++...|.......         
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISSREEEKFLEILY  638 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            9999999999999999999999988754222       2222221  223444444445555554321100         


Q ss_pred             --------------------H-H-HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632          175 --------------------T-G-AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA  232 (687)
Q Consensus       175 --------------------~-l-a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  232 (687)
                                          . + -.+-+..|..---...++++....|-    .++...-.+....|.++-+.+.....
T Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (932)
T PRK13184        639 HKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY----RALADIFYVACDLGNWEFFSQFSDIL  714 (932)
T ss_pred             hhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH----HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                                0 0 01112233333333445555444332    34555566667888887766655554


Q ss_pred             HHHhcc-CCCch--------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632          233 QIVRFS-GKELP--------LKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH  303 (687)
Q Consensus       233 ~~~~~~-~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  303 (687)
                      ...... +.+..        ...+..-..+......++++...+...   .+.....+....+.-....++.+.-....+
T Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (932)
T PRK13184        715 AEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---DPTLILYAFDLFAIQALLDEEGESIIQLLQ  791 (932)
T ss_pred             HHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC---CHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            432110 01111        111222233344455677776644443   221111222233333333344333333333


Q ss_pred             HhhhccCC--CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcC--
Q 005632          304 FLETNAGT--DNGYLYLKLAECYLSLKERAHAIMFFYKALD--RFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL--  377 (687)
Q Consensus       304 ~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--  377 (687)
                      .+.....+  ...........+|....++++|-+.+...-.  ...+...+....|.-+...++-+-|...|....+.  
T Consensus       792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  871 (932)
T PRK13184        792 LIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDAL  871 (932)
T ss_pred             HHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcccccc
Confidence            33322112  2234445566788888999999888743211  12244667777888888888888888888866632  


Q ss_pred             CcccCC---------CCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005632          378 DSLDMN---------SDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV  421 (687)
Q Consensus       378 ~~~~~~---------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  421 (687)
                      .|....         .....+||.....+..+...+.-.|+.++- ..|+.+.
T Consensus       872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  923 (932)
T PRK13184        872 FPRSLDGDIFDYLGKISDNLSWWEKKQLLRQKFLYFHCLGDSEER-DKYRQAY  923 (932)
T ss_pred             CcchhhccccchhccccccccHHHHHHHHHHHHHHHHHhCChhHh-HHHHHHH
Confidence            221111         134557898888999999999999998887 5555544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.028  Score=50.70  Aligned_cols=185  Identities=13%  Similarity=0.171  Sum_probs=142.0

Q ss_pred             hhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632           32 PGVTKMLGEASLQYA-YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQLL  109 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la  109 (687)
                      .+....+...++.+. ...-+.|+.+...++..+|.+..+|...-.++..++ +..+-++++..++..+|.+..+|...-
T Consensus        40 e~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr  119 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR  119 (318)
T ss_pred             hhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence            344555544444433 455688999999999999999888887777776654 677888999999999999999999888


Q ss_pred             HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC---
Q 005632          110 TFAVQKGDTA-QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CG---  184 (687)
Q Consensus       110 ~~~~~~g~~~-~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g---  184 (687)
                      .+....|++. .-++..+.++..+..+-.+|...-.+....+.++.-+.+..++++.+-.+-.+|...-.+... .|   
T Consensus       120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~  199 (318)
T KOG0530|consen  120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS  199 (318)
T ss_pred             HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc
Confidence            8888888887 778889999998888889999998899999999999999999999877776666544332222 12   


Q ss_pred             --ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632          185 --QTARSIGILEEYLKVHPSDADLSVIDLLVAILME  218 (687)
Q Consensus       185 --~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~  218 (687)
                        ..+.-+.+....+...|.+..  +|..|..++..
T Consensus       200 ~~~le~El~yt~~~I~~vP~NeS--aWnYL~G~l~~  233 (318)
T KOG0530|consen  200 KAELERELNYTKDKILLVPNNES--AWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHh
Confidence              123445667777888899886  68888777775

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.55  E-value=0.00024  Score=42.84  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632          314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN  347 (687)
Q Consensus       314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  347 (687)
                      +.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678899999999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.54  E-value=0.09  Score=50.52  Aligned_cols=124  Identities=10%  Similarity=0.088  Sum_probs=82.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHhC----CCc----hHHHHHHHHHHHHcC-ChHHHHHHHHHHhccC----C---CC------
Q 005632           44 QYAYGNFEQAISLLKEVVRLS----PNL----PETYNTLGLAHSALG-NHKSAFDFYVIAAHLS----P---KD------  101 (687)
Q Consensus        44 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~----p---~~------  101 (687)
                      ...+|+++.|..++.++-...    |+.    ...++..|......+ +++.|..+++++.+.-    +   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            457889999999998885543    332    346777788888888 8888888888887661    1   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632          102 -SALWKQLLTFAVQKGDTA---QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP  167 (687)
Q Consensus       102 -~~~~~~la~~~~~~g~~~---~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  167 (687)
                       ...+..++.++...+.++   +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence             134556677777666543   444455555556676666665555555557777777777777776543

It is also involved in sporulation [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.54  E-value=0.005  Score=63.70  Aligned_cols=181  Identities=18%  Similarity=0.095  Sum_probs=114.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHH-----HHHHHHHHH----HcchHHHHHH
Q 005632          157 ESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV-----IDLLVAILM----ENNAYEKTLQ  227 (687)
Q Consensus       157 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-----~~~la~~~~----~~~~~~~A~~  227 (687)
                      -.|.-++.+-|..   ...+..+.--.|+-+.++..+.++.+...-......     |+.....+.    .....+.|.+
T Consensus       178 G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~  254 (468)
T PF10300_consen  178 GLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE  254 (468)
T ss_pred             HHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence            3555566665532   334444444567777777777777652211111101     111111111    2456677777


Q ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC---chhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632          228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN---AIDHADLITEVADTLMSLGHSNSALKYYHF  304 (687)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  304 (687)
                      .+......    .|......+..|.++...|+.++|+..|++++...   +.-..-.++.++.++.-.++|++|...+..
T Consensus       255 lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~  330 (468)
T PF10300_consen  255 LLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR  330 (468)
T ss_pred             HHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence            77777777    66777777778888888888888888888765421   122344567788888888888888888888


Q ss_pred             hhhccCCCcHHHHHHHHHHHHHhhcH-------HHHHHHHHHHHHhc
Q 005632          305 LETNAGTDNGYLYLKLAECYLSLKER-------AHAIMFFYKALDRF  344 (687)
Q Consensus       305 ~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~  344 (687)
                      +.+...-......+..|.|+...|+.       ++|.+++.++-...
T Consensus       331 L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  331 LLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            87764444566667777888888877       88888888776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00057  Score=63.31  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      -+-.-|.-|+...+|..|+..|.+.+.....+    ...|.+.|-+....|+|..|+.-..+++..+|.+..+++.-|.+
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            33444666666666666666666666553222    23455666666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC
Q 005632          146 YVEIGDYEKAAESYEQIQKLFP  167 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p  167 (687)
                      ++.+.++.+|...++..+.++.
T Consensus       163 ~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhH
Confidence            6666666666666666655543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.51  E-value=0.00016  Score=43.65  Aligned_cols=30  Identities=37%  Similarity=0.602  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSP   99 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   99 (687)
                      +|+.+|.++..+|++++|+.+|+++++++|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            344444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.51  E-value=0.2  Score=53.65  Aligned_cols=302  Identities=13%  Similarity=0.036  Sum_probs=181.8

Q ss_pred             CChhHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-----CCH
Q 005632           30 LSPGVTKM-LGEASLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-----KDS  102 (687)
Q Consensus        30 ~~~~~~~~-~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~  102 (687)
                      .+++...+ ..-+..+...|...+|+...-.+  .+|.. .+..-..+.-.+..++..--.    ..++.-|     .++
T Consensus       342 ~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~~~l~~~P  415 (894)
T COG2909         342 LAARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPAELLASTP  415 (894)
T ss_pred             cCCchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCHHHHhhCc
Confidence            34444443 44456667788899998875443  23332 223334455555555543332    2222223     345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK--D-------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN----  169 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----  169 (687)
                      ......+.......++.+|..++.++...-|.  .       ....-..|.+....|++++|+...+.++..-|.+    
T Consensus       416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~  495 (894)
T COG2909         416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS  495 (894)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence            56667788888899999999999888775433  1       2344556788889999999999999999987765    


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcch--HHHHHHHHHHHHHHhccCCCc
Q 005632          170 -VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNA--YEKTLQHIEHAQIVRFSGKEL  242 (687)
Q Consensus       170 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~  242 (687)
                       ..+...+|.+..-.|++++|..+...+.+.......    ..+....+.++..+|+  +.+....+.......-...+.
T Consensus       496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~  575 (894)
T COG2909         496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR  575 (894)
T ss_pred             hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence             356778899999999999999999988876332221    1234455778888883  333333443333321111222


Q ss_pred             ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----hCch--hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC-
Q 005632          243 ---PLKLKVKAGICYLRLGNMEKAEILFADLQW----KNAI--DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD-  312 (687)
Q Consensus       243 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-  312 (687)
                         ...++..+..++.+   ++.+.......+.    ..+.  ...-..+.++.+.+..|++++|...+..+....... 
T Consensus       576 ~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~  652 (894)
T COG2909         576 HEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ  652 (894)
T ss_pred             chhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence               22333333333433   4444444443322    2221  122233589999999999999999998876552211 


Q ss_pred             ---cHHH--HHHHHHHHHHhhcHHHHHHHHHHH
Q 005632          313 ---NGYL--YLKLAECYLSLKERAHAIMFFYKA  340 (687)
Q Consensus       313 ---~~~~--~~~la~~~~~~g~~~~A~~~~~~a  340 (687)
                         +..+  ..........+|+.+.|.....+.
T Consensus       653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence               1111  122223345678888888887773

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.50  E-value=0.0036  Score=53.63  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  164 (687)
                      .+...++..+...|++++|+..+++++..+|.+..++..+..++...|+...|+..|+++..
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34455566666667777777777777777776666666677777777777777666666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.49  E-value=0.00021  Score=43.09  Aligned_cols=29  Identities=34%  Similarity=0.547  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSP   99 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p   99 (687)
                      ++.+|.+++..|++++|+.+|++++.++|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            33444444444444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.49  E-value=0.11  Score=50.00  Aligned_cols=124  Identities=18%  Similarity=0.191  Sum_probs=90.1

Q ss_pred             HHHcCChHHHHHHHHHHhccC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CC------
Q 005632           78 HSALGNHKSAFDFYVIAAHLS----PKD----SALWKQLLTFAVQKG-DTAQAMYYIRQAIRA----EP---KD------  135 (687)
Q Consensus        78 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~----~p---~~------  135 (687)
                      ....|+++.|..++.++-...    |+.    ...++..|......+ +++.|..+++++.+.    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            357899999999998886544    332    244667777888888 999999999998876    21   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005632          136 -ISLRIHLASFYVEIGDYE---KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP  201 (687)
Q Consensus       136 -~~~~~~la~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  201 (687)
                       ..++..++.+|...+.++   +|...++.+....|+.+..+...-.++...++.+++.+.+.+++...+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence             235677888888877654   455566666667788787776666666668888888888888887654

It is also involved in sporulation [].

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.001  Score=61.69  Aligned_cols=108  Identities=20%  Similarity=0.142  Sum_probs=94.3

Q ss_pred             hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc--CCC-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632          273 KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA--GTD-NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID  349 (687)
Q Consensus       273 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  349 (687)
                      ..|.....-+..-|.-|++.++|..|...|.+.+...  +|+ ++.+|.+.|.+....|+|..|+....+++..+|.+..
T Consensus        75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen   75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence            3444566667788999999999999999999988763  233 6778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHhcCCCCcCCcc
Q 005632          350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSL  380 (687)
Q Consensus       350 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  380 (687)
                      +++.-+.++..+.++.+|...++..+..+..
T Consensus       155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            9999999999999999999999988776553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.44  E-value=0.032  Score=56.26  Aligned_cols=278  Identities=11%  Similarity=0.027  Sum_probs=143.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Q 005632           74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASF  145 (687)
Q Consensus        74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~  145 (687)
                      .+.+..+.|+++.-.++....-   .+.+...+..+......|+++++..+.+++...-        +......+..-..
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~---~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~   80 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSN---EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK   80 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhcc---CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            3567788999998444333322   2233555666666668999999999888876632        1111111111112


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHH--HHHHHHHh--CCCCCcHHHHHHHHHHHH
Q 005632          146 YVEIGDYEKAAESYEQIQKLFPDNV----DATKTGAQLFLKCGQTARSIG--ILEEYLKV--HPSDADLSVIDLLVAILM  217 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~--~~~~~~~~--~p~~~~~~~~~~la~~~~  217 (687)
                      +....+.+++..+....... +...    ..|...-.  ....+++-=..  .++..+-.  .........+...+.+..
T Consensus        81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~--~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR  157 (352)
T PF02259_consen   81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLP--NMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR  157 (352)
T ss_pred             HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            22223333333333211100 0000    00110000  00111111111  11111110  111122236778888888


Q ss_pred             HcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhh--HHHHHHHHHHHHhcCCh
Q 005632          218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH--ADLITEVADTLMSLGHS  295 (687)
Q Consensus       218 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~  295 (687)
                      ..|.++.|...+.++...........+.+.+..+.++...|+..+|+..++..+.......  ......+......  ..
T Consensus       158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  235 (352)
T PF02259_consen  158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE--SL  235 (352)
T ss_pred             HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc--cc
Confidence            8888888888888877653222333566777778888888888888888887765221111  0000000000000  00


Q ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh------hcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 005632          296 NSALKYYHFLETNAGTDNGYLYLKLAECYLSL------KERAHAIMFFYKALDRFEDNIDARLTLASLLLEE  361 (687)
Q Consensus       296 ~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  361 (687)
                      +.....-  .........+.++..+|......      +..+++...|.++++.+|....++..+|..+...
T Consensus       236 ~~~~~~~--~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  236 EVISSTN--LDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccccccc--hhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence            0000000  00000122345677777777777      8899999999999999999999999998877654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.056  Score=55.61  Aligned_cols=192  Identities=13%  Similarity=0.022  Sum_probs=110.8

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---------HHHHHHHHHHHHcC
Q 005632           46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---------ALWKQLLTFAVQKG  116 (687)
Q Consensus        46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g  116 (687)
                      ..=..++|+++.    +.+| +|..|..++......-.++-|...|-+.-... .-.         .--...+.+-.--|
T Consensus       675 e~vgledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g  748 (1189)
T KOG2041|consen  675 EAVGLEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYG  748 (1189)
T ss_pred             HHhchHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhc
Confidence            333456666554    4466 78999999999888888888888776653221 110         00123344445568


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      ++++|...|-.+-..   +     .-..++...|++-...+.++..-.-+.+  -..++..+|..+..+..+++|.++|.
T Consensus       749 ~feeaek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~  820 (1189)
T KOG2041|consen  749 EFEEAEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS  820 (1189)
T ss_pred             chhHhhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887654322   1     1223455667776666665543221111  13677788888888888888888877


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632          195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD  269 (687)
Q Consensus       195 ~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  269 (687)
                      ..-.          ....+.+++....|++-..+.    ..    -|.+...+-.+|..+...|.-++|.+.+-+
T Consensus       821 ~~~~----------~e~~~ecly~le~f~~LE~la----~~----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  821 YCGD----------TENQIECLYRLELFGELEVLA----RT----LPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             hccc----------hHhHHHHHHHHHhhhhHHHHH----Hh----cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            6421          114555666666555433222    22    233334444566666666666666665544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.38  E-value=0.0048  Score=52.83  Aligned_cols=97  Identities=24%  Similarity=0.289  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------------------chHHHHHHHHHHHHcCChHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN----------------------LPETYNTLGLAHSALGNHKSAFDFY   91 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----------------------~~~~~~~l~~~~~~~g~~~~A~~~~   91 (687)
                      +..+...|......|+.+.++..+++++.....                      ...+...++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            345556677788899999999999999986422                      1224566777888999999999999


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632           92 VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR  130 (687)
Q Consensus        92 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  130 (687)
                      ++++..+|.+..++..+..++...|+..+|+..|++...
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.094  Score=47.47  Aligned_cols=122  Identities=15%  Similarity=0.157  Sum_probs=90.6

Q ss_pred             ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 005632           83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE-KAAESYE  160 (687)
Q Consensus        83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~  160 (687)
                      .-+.|+..-..++.++|.+..+|...-.++..++ +..+-++++..+++.+|.+-.+|...-.+....|++. .-++..+
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~  137 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK  137 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence            3445566666777788887777776666665544 5667778888888888888888887777777777777 7777888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       161 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      .++..+..+..+|...--+....+.++.-+.+..++++.+-.+.
T Consensus       138 ~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN  181 (318)
T KOG0530|consen  138 LMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN  181 (318)
T ss_pred             HHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence            88888777888887777777777778888888888877664443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.36  E-value=0.037  Score=46.54  Aligned_cols=56  Identities=14%  Similarity=0.017  Sum_probs=22.4

Q ss_pred             HHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 005632          286 ADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL  341 (687)
Q Consensus       286 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  341 (687)
                      +.++...|.|++-....+.+....+|-...+.-.||..-++.|++..|...|.++.
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia  194 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA  194 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence            33334444444444333333322223333333344444444444444444444433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.34  E-value=0.00024  Score=66.08  Aligned_cols=90  Identities=18%  Similarity=0.159  Sum_probs=56.5

Q ss_pred             HHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           77 AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA  156 (687)
Q Consensus        77 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  156 (687)
                      -.+..|.+++|++.|..++.++|.....+...+.+++.++....|+.-+..++.++|+...-+-..+.....+|++.+|.
T Consensus       123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            33445566666666666666666666666666666666666666666666666666666655666666666666666666


Q ss_pred             HHHHHHHHhC
Q 005632          157 ESYEQIQKLF  166 (687)
Q Consensus       157 ~~~~~~~~~~  166 (687)
                      ..+..+.+++
T Consensus       203 ~dl~~a~kld  212 (377)
T KOG1308|consen  203 HDLALACKLD  212 (377)
T ss_pred             HHHHHHHhcc
Confidence            6666666554

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.33  E-value=0.41  Score=57.01  Aligned_cols=331  Identities=12%  Similarity=0.066  Sum_probs=190.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           39 GEASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      ..|..-++.|.|.+|+-++++- ...+.    ....++.+-.+|...++++.-....... ..+|+    ....-.....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADPS----LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCcc----HHHHHHHHHh
Confidence            5688889999999999999985 22221    1234455555888888888766665531 11222    3344445667


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCChHHHHHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA-QLFLKCGQTARSIGIL  193 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~  193 (687)
                      .|++..|..+|+++++.+|+....+...-......|.+...+...+-.....++..+-+..++ .+..+.++++.-..+.
T Consensus      1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred             hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence            899999999999999999987777777777777788888888777666655555444444433 2234555555544442


Q ss_pred             H--------------HHHHhCCCCCcHHHHHHHHHHH----------HHcchHHHHHHHHHHHHHH------------hc
Q 005632          194 E--------------EYLKVHPSDADLSVIDLLVAIL----------MENNAYEKTLQHIEHAQIV------------RF  237 (687)
Q Consensus       194 ~--------------~~~~~~p~~~~~~~~~~la~~~----------~~~~~~~~A~~~~~~~~~~------------~~  237 (687)
                      .              ..+.....+.-. .+..+...-          ...|.|..+.++.-+....            ..
T Consensus      1542 ~~~n~e~w~~~~~g~~ll~~~~kD~~~-~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s 1620 (2382)
T KOG0890|consen 1542 SDRNIEYWSVESIGKLLLRNKKKDEIA-TLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVS 1620 (2382)
T ss_pred             hcccccchhHHHHHHHHHhhcccchhh-HHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            2              001111111100 000110000          1111222333322222111            00


Q ss_pred             c-----CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---hC---chhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632          238 S-----GKELPLKLKVKAGICYLRLGNMEKAEILFADLQW---KN---AIDHADLITEVADTLMSLGHSNSALKYYHFLE  306 (687)
Q Consensus       238 ~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  306 (687)
                      .     ....++........-+.+   ..+-+-.+++..-   ..   .....+.|...|++....|+++.|...+-.+.
T Consensus      1621 ~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1621 YDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred             ccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence            0     011112222222222222   3333333333221   12   23467889999999999999999999987777


Q ss_pred             hccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc-CCC----------------HHHHHHHHHHHHHcCCH--HHH
Q 005632          307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-EDN----------------IDARLTLASLLLEEAKE--EEA  367 (687)
Q Consensus       307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~----------------~~~~~~la~~~~~~g~~--~~A  367 (687)
                      +.   .-+.++...|..+...|+-..|+..+++.++.+ |+.                ..+.+.++......|++  ..-
T Consensus      1698 e~---r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~i 1774 (2382)
T KOG0890|consen 1698 ES---RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDI 1774 (2382)
T ss_pred             hc---ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHH
Confidence            54   267789999999999999999999999999653 331                12334444555555653  345


Q ss_pred             HHhcCCCCcCCcccC
Q 005632          368 ITLLSPPKDLDSLDM  382 (687)
Q Consensus       368 ~~~~~~a~~~~~~~~  382 (687)
                      +++|..+....|...
T Consensus      1775 lk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1775 LKYYHDAKAILPEWE 1789 (2382)
T ss_pred             HHHHHHHHHHccccc
Confidence            667777777777543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.024  Score=48.90  Aligned_cols=116  Identities=14%  Similarity=0.088  Sum_probs=76.8

Q ss_pred             HHHHHHHhccCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632           88 FDFYVIAAHLSPKDSA---LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHLASFYVEIGDYEKAAESYEQ  161 (687)
Q Consensus        88 ~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~  161 (687)
                      .....+....+|.+..   +...++..+...|++++|+..++.++....+.   .-+-..++.+...+|.+++|+..+..
T Consensus        72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976          72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            3334444444444332   34566778888888888888888887643222   23466788888888888888887766


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          162 IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       162 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      .-... -.+......|.++...|+-++|+..|++++...++..
T Consensus       152 ~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         152 IKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             ccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            43210 1123345678888888888888888888888875544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.22  E-value=0.027  Score=48.63  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhhCchh--hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Q 005632          247 KVKAGICYLRLGNMEKAEILFADLQWKNAID--HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECY  324 (687)
Q Consensus       247 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~  324 (687)
                      ...++..+...+++++|...++.++......  ..-+-..++.+....|.+++|+..+.....  +.-.+......|.++
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil  169 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL  169 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence            3344555555555566655555554322211  223345566666666666666666644331  122333445566677


Q ss_pred             HHhhcHHHHHHHHHHHHHhcCC
Q 005632          325 LSLKERAHAIMFFYKALDRFED  346 (687)
Q Consensus       325 ~~~g~~~~A~~~~~~al~~~p~  346 (687)
                      ...|+.++|+..|+++++.+++
T Consensus       170 l~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         170 LAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHcCchHHHHHHHHHHHHccCC
Confidence            7777777777777777666543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.21  E-value=0.049  Score=45.83  Aligned_cols=151  Identities=7%  Similarity=-0.020  Sum_probs=111.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632          174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC  253 (687)
Q Consensus       174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (687)
                      +.-+.-+...+..++|+..|..+-+..-.....-+....+.+....|+...|+..|..+-...+........+...-+.+
T Consensus        62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l  141 (221)
T COG4649          62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL  141 (221)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence            34455566778899999999888777655555446777888999999999999999998766332233345667778888


Q ss_pred             HHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Q 005632          254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS  326 (687)
Q Consensus       254 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~  326 (687)
                      +...|.|++.....+.+-....+-...+...||..-++.|++..|..+|..+..  +...|......+.+...
T Consensus       142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~--Da~aprnirqRAq~mld  212 (221)
T COG4649         142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN--DAQAPRNIRQRAQIMLD  212 (221)
T ss_pred             HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc--cccCcHHHHHHHHHHHH
Confidence            899999999888888765443334667788899999999999999999988774  34555555555555443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.16  E-value=0.05  Score=53.40  Aligned_cols=110  Identities=15%  Similarity=0.089  Sum_probs=58.9

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHcCC------------hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           55 SLLKEVVRLSPNLPETYNTLGLAHSALGN------------HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM  122 (687)
Q Consensus        55 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  122 (687)
                      ..|++.+..+|.+.++|..+...--..-.            .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45667777788888888777655433221            234445555555555555555555555555555555555


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 005632          123 YYIRQAIRAEPKDISLRIHLASFYVE---IGDYEKAAESYEQIQK  164 (687)
Q Consensus       123 ~~~~~a~~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~  164 (687)
                      ..+++++..+|+++..|...-.....   .-.+......|.+++.
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~  130 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR  130 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            55555555555555554443333222   1234444444444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.15  E-value=0.3  Score=48.06  Aligned_cols=130  Identities=10%  Similarity=0.041  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-----LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      .+...|.++..++++.+|...|.++.+...+.+.     .+..+....+-+++.+.-...+-..-+..|..+......|.
T Consensus         8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L   87 (549)
T PF07079_consen    8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL   87 (549)
T ss_pred             HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            3445677777788888888888777765444432     22222222334455555555555555566777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH-------------H--HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632          145 FYVEIGDYEKAAESYEQIQKLFPDNV-------------D--ATKTGAQLFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~--~~~~la~~~~~~g~~~~A~~~~~~~~~~  199 (687)
                      ...+.+++.+|++.+....+.-....             +  .-...+.++...|++.++...+++.+..
T Consensus        88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            77777777777777766655422211             0  1113355566666666666666665543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=97.13  E-value=0.55  Score=50.73  Aligned_cols=128  Identities=10%  Similarity=0.025  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--ChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--NHKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      ....|..|...+..|++..+.....++ ..+|-  ..|...-.+....+  .++    -+...+...|+.+..-......
T Consensus        33 ~r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~  105 (644)
T PRK11619         33 QRQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRF  105 (644)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHH
Confidence            467889999999999999987766653 33443  22222222222222  233    3333444566655443333322


Q ss_pred             ---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          112 ---AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA  172 (687)
Q Consensus       112 ---~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  172 (687)
                         +...+++..-+.++    ...|.+.......+......|+.++|.....++.......+..
T Consensus       106 l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~  165 (644)
T PRK11619        106 VNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNA  165 (644)
T ss_pred             HHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChH
Confidence               33455666555432    2347788888888888999999888887777776554443333

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.07  E-value=0.62  Score=55.60  Aligned_cols=134  Identities=11%  Similarity=0.067  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHh---ccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHH
Q 005632          222 YEKTLQHIEHAQIVR---FSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA  298 (687)
Q Consensus       222 ~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  298 (687)
                      ..+-+-.++++.-..   +.-.......|...|.+....|.++.|...+-.+.+..   -+.+....|..+...|+...|
T Consensus      1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~A 1721 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNA 1721 (2382)
T ss_pred             HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHH
Confidence            444455555554332   12244567889999999999999999999888876553   678889999999999999999


Q ss_pred             HHHHHHhhhccCCC----------c------HHHHHHHHHHHHHhhcH--HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005632          299 LKYYHFLETNAGTD----------N------GYLYLKLAECYLSLKER--AHAIMFFYKALDRFEDNIDARLTLASLL  358 (687)
Q Consensus       299 ~~~~~~~~~~~~~~----------~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~  358 (687)
                      +..+++.++...|+          .      ..+.+.++......|++  .+-+++|..+.+..|...+.++.+|..|
T Consensus      1722 l~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1722 LSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred             HHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence            99999988653333          1      12334444444555553  3467889999999997766677676443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.05  E-value=0.074  Score=52.23  Aligned_cols=161  Identities=14%  Similarity=0.035  Sum_probs=97.8

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          125 IRQAIRAEPKDISLRIHLASFYVEIG------------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       125 ~~~a~~~~p~~~~~~~~la~~~~~~g------------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      +++.+..+|.+.++|..+....-..-            -.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+.
T Consensus         8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~   87 (321)
T PF08424_consen    8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK   87 (321)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            44455555555555555554433221            135567788888888888888888888888888888888888


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHH---cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632          193 LEEYLKVHPSDADLSVIDLLVAILME---NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD  269 (687)
Q Consensus       193 ~~~~~~~~p~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  269 (687)
                      +++++..+|++..  +|.........   .-.++.....|.+++..........              .........+  
T Consensus        88 we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~--------------~~~~~~~~~~--  149 (321)
T PF08424_consen   88 WEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR--------------MTSHPDLPEL--  149 (321)
T ss_pred             HHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc--------------cccccchhhH--
Confidence            8888888888764  44443333222   2356777777777776522100000              0000000000  


Q ss_pred             HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                           ......++..+...+...|..+.|+..++.+++.
T Consensus       150 -----e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  150 -----EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             -----HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence                 0124455667777788888888888888887776

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.02  E-value=0.0016  Score=39.12  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632          315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDN  347 (687)
Q Consensus       315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  347 (687)
                      .+++.+|.++..+|++++|..+|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578889999999999999999999999998853

...

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.99  E-value=0.4  Score=46.69  Aligned_cols=169  Identities=17%  Similarity=0.094  Sum_probs=106.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc----CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH--
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL----GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ--  114 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--  114 (687)
                      +......+++..|...+..+-..  .++.....++.+|...    .+..+|..+|..+.  ...++.+.+.+|.+|..  
T Consensus        48 ~~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~  123 (292)
T COG0790          48 GAGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGR  123 (292)
T ss_pred             cccccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCC
Confidence            34444567778888888777652  2336777777777653    35677888887543  34566777778877776  


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 005632          115 --KGDTAQAMYYIRQAIRAEPKD-ISLRIHLASFYVEIG-------DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK--  182 (687)
Q Consensus       115 --~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--  182 (687)
                        ..+..+|..+|+++....-.. ..+.+.++.+|..-.       +...|...|.++....  ++.+.+.+|.+|..  
T Consensus       124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~  201 (292)
T COG0790         124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL  201 (292)
T ss_pred             CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC
Confidence              347788888888887764322 233666777666542       2235777777766654  66677777766644  


Q ss_pred             --cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632          183 --CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN  220 (687)
Q Consensus       183 --~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~  220 (687)
                        ..++.+|..+|.++.+...  .  ...+.++ ++...|
T Consensus       202 Gv~~d~~~A~~wy~~Aa~~g~--~--~a~~~~~-~~~~~g  236 (292)
T COG0790         202 GVPRDLKKAFRWYKKAAEQGD--G--AACYNLG-LMYLNG  236 (292)
T ss_pred             CCCcCHHHHHHHHHHHHHCCC--H--HHHHHHH-HHHhcC
Confidence              2366777777777776654  2  2455666 555444

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.91  E-value=0.013  Score=45.48  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=66.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           40 EASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      +|..++.+||+-+|+++.+..+..++++.   ..+...|.++..+            +......+...-+.+        
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl--------   61 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL--------   61 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH--------
Confidence            57788999999999999999999888766   4455566665433            222221122222222        


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL  165 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  165 (687)
                         .++++|.++..+.|..+..++.+|.-+.....|++++.-.++++..
T Consensus        62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence               2566666777777766666777766666666667776666666654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.88  E-value=0.2  Score=45.51  Aligned_cols=51  Identities=20%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632           46 AYGNFEQAISLLKEVVRLSPNLPE----TYNTLGLAHSALGNHKSAFDFYVIAAH   96 (687)
Q Consensus        46 ~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~   96 (687)
                      ...+.++|+.-|+++++..|...+    ++-.+..+++.+|++++-...|.+.+.
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            345889999999999998877543    677778888899999988888887764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.85  E-value=0.027  Score=47.37  Aligned_cols=86  Identities=21%  Similarity=0.201  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..++.........++.+++..++.-+--..|+.++.-..-|.+++..|++.+|+..|+.+....|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            45566777777778888888888888777888888888888888888888888888888877777777777777788877


Q ss_pred             HcCCHH
Q 005632          114 QKGDTA  119 (687)
Q Consensus       114 ~~g~~~  119 (687)
                      ..|+.+
T Consensus        90 ~~~D~~   95 (160)
T PF09613_consen   90 ALGDPS   95 (160)
T ss_pred             HcCChH
Confidence            777643

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.72  E-value=0.007  Score=55.55  Aligned_cols=76  Identities=22%  Similarity=0.265  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL  109 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  109 (687)
                      +...+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            3334445555566666666666666666666666666666666666666666666666666666666666555443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.70  E-value=0.002  Score=60.21  Aligned_cols=89  Identities=18%  Similarity=0.142  Sum_probs=59.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG  191 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  191 (687)
                      .+..|.+++|++.|..++.++|.....+...+.+++.+++...|+.-+..+++++|+...-+-..+.....+|++++|..
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhC
Q 005632          192 ILEEYLKVH  200 (687)
Q Consensus       192 ~~~~~~~~~  200 (687)
                      .+..+.+++
T Consensus       204 dl~~a~kld  212 (377)
T KOG1308|consen  204 DLALACKLD  212 (377)
T ss_pred             HHHHHHhcc
Confidence            666666654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.67  E-value=0.0039  Score=37.40  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=8.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIR  130 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~  130 (687)
                      +|.++...|++++|+.+|+++++
T Consensus         7 lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    7 LGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            33333333333333333333333

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.66  E-value=0.0046  Score=36.73  Aligned_cols=33  Identities=30%  Similarity=0.640  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC
Q 005632          315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDN  347 (687)
Q Consensus       315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  347 (687)
                      ++++.+|.++...|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367788899999999999999999999888864

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.64  E-value=0.12  Score=51.45  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC-CCchHHHHH
Q 005632          171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG-KELPLKLKV  248 (687)
Q Consensus       171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~  248 (687)
                      .+.+.....+.+.|-+..|.++.+-++.++|. |+- .+...+-....+.++++--+..++......... ...-+...+
T Consensus       104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~  182 (360)
T PF04910_consen  104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF  182 (360)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence            34556677788899999999999999999998 554 356666666677888887777777655420000 011224556


Q ss_pred             HHHHHHHHcCCH---------------HHHHHHHHHHhhhCch
Q 005632          249 KAGICYLRLGNM---------------EKAEILFADLQWKNAI  276 (687)
Q Consensus       249 ~l~~~~~~~~~~---------------~~A~~~~~~~~~~~~~  276 (687)
                      ..+.++...++.               +.|...+.+++...|.
T Consensus       183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            667777777776               7777777777766553

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.58  E-value=0.82  Score=44.52  Aligned_cols=167  Identities=17%  Similarity=0.080  Sum_probs=114.9

Q ss_pred             HHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 005632           77 AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK----GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----  148 (687)
Q Consensus        77 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----  148 (687)
                      .....+++..|...+..+...  .+......++.+|...    .+..+|..+|+.+..  ..++.+.+.+|.+|..    
T Consensus        50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv  125 (292)
T COG0790          50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGV  125 (292)
T ss_pred             cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCc
Confidence            334567888888888887662  3346777777777654    467889999985544  4677888889998887    


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH--
Q 005632          149 IGDYEKAAESYEQIQKLFPDN-VDATKTGAQLFLKCG-------QTARSIGILEEYLKVHPSDADLSVIDLLVAILME--  218 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~--  218 (687)
                      ..+..+|..+|.++.+..-.. ..+...++.+|..-.       +...|...|.++....  +.  .+...+|.+|..  
T Consensus       126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~--~a~~~lg~~y~~G~  201 (292)
T COG0790         126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP--DAQLLLGRMYEKGL  201 (292)
T ss_pred             ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH--HHHHHHHHHHHcCC
Confidence            458899999999998874333 234777777776642       2236777777776655  22  256677777654  


Q ss_pred             --cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632          219 --NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG  258 (687)
Q Consensus       219 --~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  258 (687)
                        ..++.+|..+|.++...    ..  ....+.++ ++...|
T Consensus       202 Gv~~d~~~A~~wy~~Aa~~----g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         202 GVPRDLKKAFRWYKKAAEQ----GD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCCcCHHHHHHHHHHHHHC----CC--HHHHHHHH-HHHhcC
Confidence              34788888888888876    33  56666666 555555

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.51  E-value=0.16  Score=50.49  Aligned_cols=176  Identities=11%  Similarity=-0.019  Sum_probs=108.0

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC
Q 005632          162 IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE  241 (687)
Q Consensus       162 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  241 (687)
                      .+..+|-+.+++..++.++..+|+...|.+.+++++=.......  ..+.....-...|..   .--|.      ...+.
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~--~~F~~~~~~~~~g~~---rL~~~------~~eNR  100 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH--PSFSPFRSNLTSGNC---RLDYR------RPENR  100 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH--HHhhhhhcccccCcc---ccCCc------cccch
Confidence            34567778888888888888888888888888877543211000  000000000000000   00000      00122


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH-HHHHHHHHHHHhcCChHHHHHHHHHhhhccCC----CcHHH
Q 005632          242 LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA-DLITEVADTLMSLGHSNSALKYYHFLETNAGT----DNGYL  316 (687)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~  316 (687)
                      ....+.+.....+.+.|-+..|.++.+-++..+|..++ .+...+-....+.++++--+++++........    .-|..
T Consensus       101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~  180 (360)
T PF04910_consen  101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF  180 (360)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence            23345566677788889999999999998888887444 44455555556778888777777765542111    24457


Q ss_pred             HHHHHHHHHHhhcH---------------HHHHHHHHHHHHhcCCCH
Q 005632          317 YLKLAECYLSLKER---------------AHAIMFFYKALDRFEDNI  348 (687)
Q Consensus       317 ~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~  348 (687)
                      .+..+.++...++.               +.|...+.+|+...|.-.
T Consensus       181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence            77888888888888               899999999999888643

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.49  E-value=1.7  Score=47.11  Aligned_cols=331  Identities=11%  Similarity=0.047  Sum_probs=174.8

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHH---HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           56 LLKEVVRLSPNLPETYNTLGLAHS---ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE  132 (687)
Q Consensus        56 ~~~~~l~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  132 (687)
                      .+...+..+|+.|..-........   ..+++..-+.++    ...|.+....+.++......|+.++|.....++....
T Consensus        84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g  159 (644)
T PRK11619         84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG  159 (644)
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            455556778887765544444433   345555555422    2347888888889999999999988888887776655


Q ss_pred             CCCHHHHHHHHHHHH------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHH
Q 005632          133 PKDISLRIHLASFYV------------------EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTARSIGIL  193 (687)
Q Consensus       133 p~~~~~~~~la~~~~------------------~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  193 (687)
                      ...+.....+-..+.                  ..|+...|......+    +.+...   ++..... ..+...+...+
T Consensus       160 ~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l----~~~~~~---~a~a~~al~~~p~~~~~~~  232 (644)
T PRK11619        160 KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL----PADYQT---IASALIKLQNDPNTVETFA  232 (644)
T ss_pred             CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc----ChhHHH---HHHHHHHHHHCHHHHHHHh
Confidence            444444333333333                  334443333222221    111111   1111111 11122221111


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632          194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK  273 (687)
Q Consensus       194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  273 (687)
                      ..   ..|+... .-...++..-....+.+.|...+.+......-+.+....+...++.-....+..++|...+..+...
T Consensus       233 ~~---~~~~~~~-~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~  308 (644)
T PRK11619        233 RT---TGPTDFT-RQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR  308 (644)
T ss_pred             hc---cCCChhh-HHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence            11   1122111 1122333334456677888888887655422112223334444554444443366777777765433


Q ss_pred             CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632          274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT  353 (687)
Q Consensus       274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  353 (687)
                      ..  +.........+....++++.+..++..+... ........+-+|+.+...|+.++|...|+++..  +.+  .+-.
T Consensus       309 ~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~  381 (644)
T PRK11619        309 SQ--STSLLERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPM  381 (644)
T ss_pred             cC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHH
Confidence            22  3333444444556888999888888776543 345777888999998889999999999999744  222  2223


Q ss_pred             HHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632          354 LASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       354 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  423 (687)
                      |+.-  ++|..-.    +..  ...|..     ... . ...-....+..+...|+...|......++..
T Consensus       382 LAa~--~Lg~~~~----~~~--~~~~~~-----~~~-~-~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~  436 (644)
T PRK11619        382 VAAQ--RLGEEYP----LKI--DKAPKP-----DSA-L-TQGPEMARVRELMYWNMDNTARSEWANLVAS  436 (644)
T ss_pred             HHHH--HcCCCCC----CCC--CCCCch-----hhh-h-ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3322  2232100    000  000000     000 0 0013456777788889999988888777764

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.49  E-value=0.0063  Score=55.96  Aligned_cols=87  Identities=10%  Similarity=0.083  Sum_probs=75.8

Q ss_pred             chhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccce-eccccccccchHHHHHHHH
Q 005632          591 HGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIII-SGHQFTMASHHQDAARCYL  669 (687)
Q Consensus       591 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-~g~~~~~~~~~~~A~~~~~  669 (687)
                      ....++|.. -+.|+++..|..+++.....+-    +.+-...+.+++.+||.++..|+. .+.-+...++++.+...|.
T Consensus        92 ~~f~~~R~t-nkff~D~k~w~~y~~Y~~k~k~----y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~  166 (435)
T COG5191          92 KIFELYRST-NKFFNDPKIWSQYAAYVIKKKM----YGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFL  166 (435)
T ss_pred             eeEeeehhh-hcCCCCcHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHH
Confidence            334444443 3679999999999999998887    788899999999999999999986 8888899999999999999


Q ss_pred             HHHhhCCCChhhh
Q 005632          670 EAYKLLPENPLIN  682 (687)
Q Consensus       670 ~a~~~~P~~p~~~  682 (687)
                      +++..+|++|.++
T Consensus       167 ~glR~N~~~p~iw  179 (435)
T COG5191         167 KGLRMNSRSPRIW  179 (435)
T ss_pred             hhhccCCCCchHH
Confidence            9999999999876

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.39  E-value=0.0075  Score=35.79  Aligned_cols=24  Identities=38%  Similarity=0.731  Sum_probs=8.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 005632          142 LASFYVEIGDYEKAAESYEQIQKL  165 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~~~  165 (687)
                      +|.++...|++++|+..|+++++.
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.36  E-value=0.056  Score=41.11  Aligned_cols=48  Identities=21%  Similarity=0.243  Sum_probs=26.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       156 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            344555555566666666666666666666666666666655555544

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.35  E-value=0.8  Score=41.80  Aligned_cols=118  Identities=14%  Similarity=0.163  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-----------hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-CCC
Q 005632          245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----------DHADLITEVADTLMSLGHSNSALKYYHFLETNA-GTD  312 (687)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~  312 (687)
                      .....+|.+|+..++|.+-..+++++......           .-.+++..-..+|..+++-..-..+|++++... .-.
T Consensus       146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP  225 (440)
T KOG1464|consen  146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP  225 (440)
T ss_pred             eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence            34456777777777777766666665332111           123455556677778888777778888776541 122


Q ss_pred             cHHHHHH----HHHHHHHhhcHHHHHHHHHHHHHhcCC-----CHHH--HHHHHHHHHHcC
Q 005632          313 NGYLYLK----LAECYLSLKERAHAIMFFYKALDRFED-----NIDA--RLTLASLLLEEA  362 (687)
Q Consensus       313 ~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~--~~~la~~~~~~g  362 (687)
                      .|.+.-.    =|..+.+.|++++|-..|-++++....     ...+  ++.|+.++.+.|
T Consensus       226 HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  226 HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence            3333322    245678889999999888888876432     2222  345666666654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.35  E-value=1.2  Score=43.91  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=60.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHH
Q 005632          336 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVD  415 (687)
Q Consensus       336 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  415 (687)
                      .+++++...|-.+++|+.....+...++-+.|+....+.....|.               ..+.++..|...++-+.-..
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---------------L~~~lse~yel~nd~e~v~~  354 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---------------LTMFLSEYYELVNDEEAVYG  354 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---------------hheeHHHHHhhcccHHHHhh
Confidence            567888888889999999999999999999999999999887774               56778888877777766666


Q ss_pred             HHHHHHHHh
Q 005632          416 AIFPLVCES  424 (687)
Q Consensus       416 ~~~~~~~~~  424 (687)
                      +|..++...
T Consensus       355 ~fdk~~q~L  363 (660)
T COG5107         355 CFDKCTQDL  363 (660)
T ss_pred             hHHHHHHHH
Confidence            777766543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.34  E-value=0.056  Score=41.14  Aligned_cols=65  Identities=22%  Similarity=0.177  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHcCC
Q 005632           53 AISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQKGD  117 (687)
Q Consensus        53 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~  117 (687)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++.  ..+...+-.++...|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3456677777788888888888888888888888888888877776654  3344444444444443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.26  E-value=0.086  Score=44.41  Aligned_cols=81  Identities=19%  Similarity=0.086  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      +..+..+-...++.+++...+..+--+.|..++.-..-|.+++..|++.+|+..++.+....|..+.+.-.++.|+...|
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            34444444455555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             C
Q 005632          151 D  151 (687)
Q Consensus       151 ~  151 (687)
                      +
T Consensus        93 D   93 (160)
T PF09613_consen   93 D   93 (160)
T ss_pred             C
Confidence            4

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.20  E-value=0.011  Score=35.95  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632          316 LYLKLAECYLSLKERAHAIMFFYKALDR  343 (687)
Q Consensus       316 ~~~~la~~~~~~g~~~~A~~~~~~al~~  343 (687)
                      ++..+|.+|...|++++|+++|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3667888888888888888888885544

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=1.1  Score=41.42  Aligned_cols=53  Identities=21%  Similarity=0.029  Sum_probs=40.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHcCChHHHHHH
Q 005632           38 LGEASLQYAYGNFEQAISLLKEVVRLSPN--------LPETYNTLGLAHSALGNHKSAFDF   90 (687)
Q Consensus        38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~   90 (687)
                      +..|+.....+++++|+..|.+++.....        .......++.+|...|++..--+.
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~   67 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT   67 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            67788899999999999999999876321        234677888999998887654443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.16  E-value=0.1  Score=43.00  Aligned_cols=84  Identities=19%  Similarity=0.039  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      ..++.........++.+++..++..+--..|+.++.-..-|.++...|+|.+|+..|+...+..+..+...-.++.|+..
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            44555566666788888888888888888888888888888888888888888888888887777777777777777777


Q ss_pred             cCCH
Q 005632          115 KGDT  118 (687)
Q Consensus       115 ~g~~  118 (687)
                      +|+.
T Consensus        91 l~Dp   94 (153)
T TIGR02561        91 KGDA   94 (153)
T ss_pred             cCCh
Confidence            7763

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=1.1  Score=45.44  Aligned_cols=75  Identities=13%  Similarity=-0.044  Sum_probs=33.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632          123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN----VDATKTGAQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       123 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~  198 (687)
                      +.+.......|+++......+..+...|+.+.|+..+...++  +.-    .-.++.+|.++.-+.+|..|...+..+.+
T Consensus       254 ~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~d  331 (546)
T KOG3783|consen  254 KALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRD  331 (546)
T ss_pred             HHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence            333333444454544444445555555554444444444443  111    11233444444444555555555544444


Q ss_pred             h
Q 005632          199 V  199 (687)
Q Consensus       199 ~  199 (687)
                      .
T Consensus       332 e  332 (546)
T KOG3783|consen  332 E  332 (546)
T ss_pred             h
Confidence            3

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.11  E-value=0.079  Score=41.27  Aligned_cols=46  Identities=15%  Similarity=0.130  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632          154 KAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       154 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  199 (687)
                      .++++|.++..+.|.....++.+|.-+-....|+++....++++..
T Consensus        62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            3566667777777766666666666655555666666666666544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=96.06  E-value=0.03  Score=55.58  Aligned_cols=109  Identities=16%  Similarity=0.064  Sum_probs=90.6

Q ss_pred             CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc---CChHHHHHHHHHHhccCCCCHHH
Q 005632           28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---GNHKSAFDFYVIAAHLSPKDSAL  104 (687)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~  104 (687)
                      ..+++.+...+..|.-.+..+....|+..|.+++...|.....+...+.++++.   |+.-.|+.....++.++|....+
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            456778888888888888888999999999999999999888888888888764   56667777788888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI  136 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  136 (687)
                      ++.|+.++...+++.+|+.+...+....|.+.
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPTDV  479 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence            88888888888888888888887777777443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.03  E-value=0.43  Score=37.46  Aligned_cols=93  Identities=20%  Similarity=0.173  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHcCChHHHHHHHHHHhc-------c
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPN------------LPETYNTLGLAHSALGNHKSAFDFYVIAAH-------L   97 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~   97 (687)
                      .+..|...+..|-|++|...++++++....            ++-++..|+..+..+|+|++++....+++.       +
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            456677778888899999888888875321            344667777777788888777666555542       2


Q ss_pred             CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 005632           98 SPKDSALW----KQLLTFAVQKGDTAQAMYYIRQAI  129 (687)
Q Consensus        98 ~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~  129 (687)
                      +.+....|    +..+..+...|+.++|+..|+.+.
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag  127 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG  127 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            22222222    234444555555555555555443

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.98  E-value=0.044  Score=36.52  Aligned_cols=42  Identities=21%  Similarity=0.002  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 005632          315 YLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS  356 (687)
Q Consensus       315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  356 (687)
                      +.++.+|..+.++|+|++|..+.+.+++..|+|..+......
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            356788889999999999999999999999999877655443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.95  E-value=0.015  Score=35.29  Aligned_cols=21  Identities=33%  Similarity=0.388  Sum_probs=8.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q 005632          107 QLLTFAVQKGDTAQAMYYIRQ  127 (687)
Q Consensus       107 ~la~~~~~~g~~~~A~~~~~~  127 (687)
                      .||.+|...|++++|+.+|++
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            333444444444444444443

>PRK10941 hypothetical protein; Provisional

Probab=95.90  E-value=0.1  Score=49.06  Aligned_cols=70  Identities=14%  Similarity=0.154  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHH
Q 005632          138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS  207 (687)
Q Consensus       138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  207 (687)
                      ...++-.+|...++++.|+.+.+.++.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++...
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            4556777888899999999999999999999998888899999999999999999999999988888643

>PRK10941 hypothetical protein; Provisional

Probab=95.81  E-value=0.14  Score=48.20  Aligned_cols=61  Identities=15%  Similarity=0.039  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       173 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      ..++-.+|...++++.|+.+.+.++...|+++.  -+...|.+|.+.|.+..|..-++..++.
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~--e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPY--EIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            445666677777777777777777777777764  4666777777777777777777777776

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.76  E-value=2.5  Score=42.51  Aligned_cols=332  Identities=12%  Similarity=0.119  Sum_probs=177.6

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      .++.-++.-....-+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+++..+|+++..|...-+
T Consensus       103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            3444444444445556669999999999999999999999999998888776 999999999999999999977653322


Q ss_pred             HHHH---------------cCCHH-------HH-------------------HHHHHH---------H-----HHhCCCC
Q 005632          111 FAVQ---------------KGDTA-------QA-------------------MYYIRQ---------A-----IRAEPKD  135 (687)
Q Consensus       111 ~~~~---------------~g~~~-------~A-------------------~~~~~~---------a-----~~~~p~~  135 (687)
                      +-..               .++-+       .+                   ....+.         .     ....|.+
T Consensus       183 mEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~n  262 (568)
T KOG2396|consen  183 MELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDN  262 (568)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            1100               00000       00                   000000         0     0011222


Q ss_pred             HH----------------------------------------------------HH---HHHHHHHH--HcC-CHHHHHH
Q 005632          136 IS----------------------------------------------------LR---IHLASFYV--EIG-DYEKAAE  157 (687)
Q Consensus       136 ~~----------------------------------------------------~~---~~la~~~~--~~g-~~~~A~~  157 (687)
                      |.                                                    .|   .....-..  ..| ....-+.
T Consensus       263 p~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~  342 (568)
T KOG2396|consen  263 PLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMC  342 (568)
T ss_pred             CccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            11                                                    01   11111111  122 3344555


Q ss_pred             HHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCCCcHHHHHHHHHHHH-HcchHHHHHHHHHHH
Q 005632          158 SYEQIQKL---FPDNVDATKTGAQLFLKCGQTARSI-GILEEYLKVHPSDADLSVIDLLVAILM-ENNAYEKTLQHIEHA  232 (687)
Q Consensus       158 ~~~~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~p~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~  232 (687)
                      .++.+.+.   .+..+.-+..+..++.......++. ......+.   ++..  .|.....+.. .+.+++--...+...
T Consensus       343 ~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~---~s~k--~~~~kl~~~~~s~sD~q~~f~~l~n~  417 (568)
T KOG2396|consen  343 VFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR---DSGK--MWQLKLQVLIESKSDFQMLFEELFNH  417 (568)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc---chHH--HHHHHHHHHHhhcchhHHHHHHHHHH
Confidence            66666554   4555666666666666655443332 22223322   2222  3333333333 122222221111112


Q ss_pred             HHHhccCCCchHHHHHHHHHHHHHcCC-HHHHHH--HHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc
Q 005632          233 QIVRFSGKELPLKLKVKAGICYLRLGN-MEKAEI--LFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA  309 (687)
Q Consensus       233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  309 (687)
                      ++...  .......|....     .|+ ......  ++..+......+....-..+-..+.+.|-+.+|...|.++... 
T Consensus       418 ~r~~~--~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-  489 (568)
T KOG2396|consen  418 LRKQV--CSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-  489 (568)
T ss_pred             HHHHh--cchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-
Confidence            22111  111111111111     222 222211  1111222222234555566677778888899999999888876 


Q ss_pred             CCCcHHHHHHHHHHHHH--hhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCc
Q 005632          310 GTDNGYLYLKLAECYLS--LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD  376 (687)
Q Consensus       310 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  376 (687)
                      +|.....+..+..+-..  .-+...+..+|+.++.....+++.|...-..-...|..+.+-.++.+|..
T Consensus       490 pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  490 PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence            56565555544443222  23477788899999988888889888877777788887777666665544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.71  E-value=0.07  Score=35.57  Aligned_cols=34  Identities=32%  Similarity=0.392  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA  172 (687)
Q Consensus       139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  172 (687)
                      ++.+|..+.+.|+|++|..+.+.+++..|++..+
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            3344444444444444444444444444444433

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.60  E-value=0.14  Score=50.47  Aligned_cols=125  Identities=14%  Similarity=-0.017  Sum_probs=79.0

Q ss_pred             HHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632           79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES  158 (687)
Q Consensus        79 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  158 (687)
                      +..|+.-.|-.-...++...|.+|......+.+....|+|+.+...+..+-..-.....+...+-......|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            34566666666666666667777766666677777777777776666554443333333444555566667777777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                      -.-++...-.++++....+.....+|-++++...+++++.++|..
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            666666555566665555555566666777777777777766543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.59  E-value=0.046  Score=50.43  Aligned_cols=72  Identities=18%  Similarity=0.247  Sum_probs=57.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      .|.-....|+.++|...|+.++.+.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++.
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            344455778888888888888888888888888888888888888888888888888888888877766654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.29  E-value=3.8  Score=41.37  Aligned_cols=91  Identities=9%  Similarity=0.062  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 005632           52 QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD-TAQAMYYIRQAIR  130 (687)
Q Consensus        52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~  130 (687)
                      .-..+|+.++...+.++..|........+.+.+.+--..|.+++...|++++.|..-|.-.+..+. .+.|...+.+++.
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345677888888888999999988888888889999999999999999999999999988888776 9999999999999


Q ss_pred             hCCCCHHHHHHH
Q 005632          131 AEPKDISLRIHL  142 (687)
Q Consensus       131 ~~p~~~~~~~~l  142 (687)
                      .+|+++..|...
T Consensus       169 ~npdsp~Lw~ey  180 (568)
T KOG2396|consen  169 FNPDSPKLWKEY  180 (568)
T ss_pred             cCCCChHHHHHH
Confidence            999999876543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.28  E-value=0.81  Score=46.84  Aligned_cols=127  Identities=19%  Similarity=0.161  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhCCCchHHHHH--HHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 005632           53 AISLLKEVVRLSPNLPETYNT--LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ-AI  129 (687)
Q Consensus        53 A~~~~~~~l~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a~  129 (687)
                      ++..+...+..+|.++..+..  +...+...++...+.-.+...+..+|++..+...++......|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            555555556667777665433  366666677777777778888888888888888887777777666555555544 66


Q ss_pred             HhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          130 RAEPKDISLRIHL------ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       130 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      ...|.+......+      +......|+..++...+.++....|.++.+...+...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            6777776654444      7777777888888888888888888776655555444

>smart00028 TPR Tetratricopeptide repeats

Probab=95.24  E-value=0.037  Score=32.25  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632          315 YLYLKLAECYLSLKERAHAIMFFYKALDRFED  346 (687)
Q Consensus       315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  346 (687)
                      .++..+|.++...|++++|+..++++++..|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45677888888888888888888888877765

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.17  E-value=0.49  Score=43.06  Aligned_cols=30  Identities=17%  Similarity=0.275  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          279 ADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      ..+.+.+|.+..+.|++++|..+|.+++..
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            344455555555555555555555555543

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=3.1  Score=39.64  Aligned_cols=57  Identities=21%  Similarity=0.234  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC--------chHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRL--SPN--------LPETYNTLGLAHSALGNHKSAFDFYVI   93 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~   93 (687)
                      .+..+.......++++++..|..++..  .|.        .......+|..+...|+..+-......
T Consensus         7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~   73 (411)
T KOG1463|consen    7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITS   73 (411)
T ss_pred             HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            367788888888899999999999874  222        123567788888888887766555544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.14  E-value=0.44  Score=43.33  Aligned_cols=69  Identities=16%  Similarity=0.033  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHhc---------cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632          207 SVIDLLVAILMENNAYEKTLQHIEHAQIVRF---------SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       207 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  275 (687)
                      .++..+|++|...|+.+....++++|+..+.         ........+.+.+|.+..+.|++++|...|.+++....
T Consensus       119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            3556677777777775554444444444321         11223456777888888888888888888888876543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.14  E-value=1.2  Score=45.99  Aligned_cols=80  Identities=14%  Similarity=0.097  Sum_probs=38.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC-------------CCCHHHHHHHH
Q 005632           43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-------------PKDSALWKQLL  109 (687)
Q Consensus        43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~la  109 (687)
                      .+...|.+++|...---.+     ...-|..++.-.+..=+++-|.+.|.++-.+.             .....--..+|
T Consensus       565 q~Ieag~f~ea~~iaclgV-----v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA  639 (1081)
T KOG1538|consen  565 QYIERGLFKEAYQIACLGV-----TDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA  639 (1081)
T ss_pred             hhhhccchhhhhcccccce-----ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH
Confidence            4556676666654321111     11235555555555556666666665553221             00001123345


Q ss_pred             HHHHHcCCHHHHHHHHHH
Q 005632          110 TFAVQKGDTAQAMYYIRQ  127 (687)
Q Consensus       110 ~~~~~~g~~~~A~~~~~~  127 (687)
                      .++.-.|.+.+|...|.+
T Consensus       640 ~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  640 DVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHhhhhHHHHHHHHHH
Confidence            555556666666666554

>smart00028 TPR Tetratricopeptide repeats

Probab=95.13  E-value=0.038  Score=32.19  Aligned_cols=30  Identities=33%  Similarity=0.512  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSP   99 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   99 (687)
                      +++.+|.++...|++++|...++++++.+|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344444455555555555555544444443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.08  E-value=0.64  Score=37.60  Aligned_cols=78  Identities=15%  Similarity=0.021  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhccCC-CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHH
Q 005632          278 HADLITEVADTLMSLG---HSNSALKYYHFLETNAGT-DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLT  353 (687)
Q Consensus       278 ~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  353 (687)
                      .....+++++++....   +..+.+.+++.+....+| ..-...+.++..+.+.++|+.++.+.+..++..|+|..+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            5566677777776655   455677788877753233 355677788888888888999999888888888888776654


Q ss_pred             HH
Q 005632          354 LA  355 (687)
Q Consensus       354 la  355 (687)
                      --
T Consensus       111 k~  112 (149)
T KOG3364|consen  111 KE  112 (149)
T ss_pred             HH
Confidence            33

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.04  E-value=1.8  Score=44.84  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=136.9

Q ss_pred             HHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CCCCHHHHHH
Q 005632           76 LAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------------EPKDISLRIH  141 (687)
Q Consensus        76 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------------~p~~~~~~~~  141 (687)
                      ..|...|.+++|...---.+.     ..-|..+|.-....=+++-|.+.|.+.-.+              ....|. -..
T Consensus       564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iL  637 (1081)
T KOG1538|consen  564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLL  637 (1081)
T ss_pred             hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHH
Confidence            466778888877653221111     123677777777777778887777765321              111122 245


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCCcHHHHHHHH
Q 005632          142 LASFYVEIGDYEKAAESYEQIQ------KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK--VHPSDADLSVIDLLV  213 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~la  213 (687)
                      +|.++...|++.+|.+.|.+.=      ++..+  --.+.++.-+...|..++-....++-.+  .+-..+.     ..+
T Consensus       638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAA  710 (1081)
T KOG1538|consen  638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAA  710 (1081)
T ss_pred             HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHH
Confidence            7788888899999988887542      22111  1234555666666666655555444322  1222222     345


Q ss_pred             HHHHHcchHHHHHHHHH------HHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHH
Q 005632          214 AILMENNAYEKTLQHIE------HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVAD  287 (687)
Q Consensus       214 ~~~~~~~~~~~A~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~  287 (687)
                      ..+...|+.++|+...-      -++++...-+....+.+...+..+.....+.-|.++|.++-..         ..+..
T Consensus       711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVq  781 (1081)
T KOG1538|consen  711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQ  781 (1081)
T ss_pred             HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhh
Confidence            66777777777765432      2222211112333444555555566666666666666665211         23456


Q ss_pred             HHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632          288 TLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA  340 (687)
Q Consensus       288 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  340 (687)
                      ++...+++.+|..+.++.-+    -.+.+++-.|+.+....++++|.+.|-++
T Consensus       782 lHve~~~W~eAFalAe~hPe----~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  782 LHVETQRWDEAFALAEKHPE----FKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             heeecccchHhHhhhhhCcc----ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            67788888888877643322    24556777788888888888887766554

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=95.02  E-value=0.39  Score=53.93  Aligned_cols=165  Identities=16%  Similarity=0.176  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHH------HHHHH-HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC------
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAIS------LLKEV-VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS------   98 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~------~~~~~-l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------   98 (687)
                      .+....+..+......|.+.+|.+      ++... -...|..+..+..++.++...|++++|+..-.++.-..      
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence            456667788888888999988888      55533 23478888899999999999999999998888776442      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632           99 --PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus        99 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                        |+....+..++...+..++...|+..+.++..+        .|.-.....+++.++...++++.|+.+.+.+......
T Consensus      1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred             CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence              445566777777777777777777777777653        2333444566666777777777777777777764211


Q ss_pred             --------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632          169 --------NVDATKTGAQLFLKCGQTARSIGILEEY  196 (687)
Q Consensus       169 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~  196 (687)
                              ....+..+++++...+++..|....+..
T Consensus      1090 v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1090 VLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred             hcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence                    1233444555555555555554444433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.93  E-value=0.4  Score=39.69  Aligned_cols=75  Identities=15%  Similarity=0.009  Sum_probs=41.2

Q ss_pred             HHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632           77 AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD  151 (687)
Q Consensus        77 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  151 (687)
                      .....++.+++...+..+--+.|+.++.-..-|.+++..|++.+|+..++...+..+..+...-.++.|+...|+
T Consensus        19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            333455555555555555555555555555555555556666666665555555554445444455555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.74  E-value=0.64  Score=40.92  Aligned_cols=61  Identities=20%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632          138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---VDATKTGAQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~  198 (687)
                      ++..+|..|...|+.+.|++.|.++.......   .+.++.+.++.+..+++.....++.++-.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34445555555555555555555544432221   23344444444445555555444444433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.59  E-value=0.63  Score=40.95  Aligned_cols=19  Identities=5%  Similarity=-0.083  Sum_probs=9.1

Q ss_pred             HHHHHhcCChHHHHHHHHH
Q 005632          286 ADTLMSLGHSNSALKYYHF  304 (687)
Q Consensus       286 a~~~~~~g~~~~A~~~~~~  304 (687)
                      |..+...++|.+|...|-.
T Consensus       120 gL~~l~~r~f~~AA~~fl~  138 (177)
T PF10602_consen  120 GLANLAQRDFKEAAELFLD  138 (177)
T ss_pred             HHHHHHhchHHHHHHHHHc
Confidence            4444444555555555533

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.56  E-value=0.064  Score=47.41  Aligned_cols=57  Identities=25%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC
Q 005632           45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD  101 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  101 (687)
                      ...++.+.|.+.|.+++..-|+....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            344555555555555555555555555555555555555555555555555555443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.45  E-value=0.85  Score=36.93  Aligned_cols=78  Identities=12%  Similarity=0.132  Sum_probs=59.9

Q ss_pred             CchHHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHH
Q 005632          241 ELPLKLKVKAGICYLRLG---NMEKAEILFADLQW-KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYL  316 (687)
Q Consensus       241 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  316 (687)
                      .......+++++++....   +..+.+.+++.++. ..|....+..+.++..+.+.++|+.++.+.+.+++. .|++..+
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-e~~n~Qa  107 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-EPNNRQA  107 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-CCCcHHH
Confidence            445566778888887664   45667888888885 666667788889999999999999999999988877 6777665


Q ss_pred             HHH
Q 005632          317 YLK  319 (687)
Q Consensus       317 ~~~  319 (687)
                      ...
T Consensus       108 ~~L  110 (149)
T KOG3364|consen  108 LEL  110 (149)
T ss_pred             HHH
Confidence            543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=5.7  Score=40.86  Aligned_cols=48  Identities=19%  Similarity=0.126  Sum_probs=29.0

Q ss_pred             cCCHHHHHHHHHHHHHh------------CCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632           47 YGNFEQAISLLKEVVRL------------SPNLPETYNTLGLAHSALGNHKSAFDFYVIA   94 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   94 (687)
                      ...|++|...|.-+...            .|-+.+.+..++.+...+|+.+-|.....++
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~  310 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG  310 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            45678888888777654            2334555566666666666655555554444

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=2.6  Score=43.40  Aligned_cols=123  Identities=17%  Similarity=0.114  Sum_probs=98.6

Q ss_pred             ChHHHHHHHHHHhccCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632           83 NHKSAFDFYVIAAHLSPKDSALWKQ--LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE  160 (687)
Q Consensus        83 ~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  160 (687)
                      ...-++..+...+..+|.++..+..  +...+...++...+...+...+..+|++..+..+++......|....+...+.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3334666666667778888877544  46677788889899999999999999999999999999888887777766666


Q ss_pred             H-HHHhCCCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          161 Q-IQKLFPDNVDATKTG------AQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       161 ~-~~~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      . +....|++......+      +......|+..++...+.++....|.++.
T Consensus       126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~  177 (620)
T COG3914         126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR  177 (620)
T ss_pred             HHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence            5 778888887665555      88888889999999999999999998864

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.32  E-value=1.7  Score=44.54  Aligned_cols=159  Identities=16%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           42 SLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        42 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      .....+|+++++....... +.-|.- ..-...++..+.+.|..+.|+...        .++...+.|   ..+.|+.+.
T Consensus       269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHH
Confidence            3445678888877666411 112221 334555666667777777777653        334444444   356788887


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      |.+..++     .+++..|..+|...+.+|+++-|.++|+++-.        +..+..+|...|+.+.-.+..+.+....
T Consensus       337 A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  337 ALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            7665432     34677888888888888888888888877532        2355566667777655555554444332


Q ss_pred             CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632          201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHA  232 (687)
Q Consensus       201 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  232 (687)
                      .       +...-.+++..|+.++.++.+.+.
T Consensus       404 ~-------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  404 D-------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             --------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             C-------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            1       222334445556666666666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.07  E-value=13  Score=42.04  Aligned_cols=99  Identities=18%  Similarity=0.091  Sum_probs=77.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQK----G---DTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----g---~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      ....++.....|+.|+..|++.....|...   ++.+..|.....+    |   .+++|+..|++.-. .|.-|--|...
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  558 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK  558 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence            344667778899999999999998888654   5666777665533    3   46777777776543 45666678889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDA  172 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  172 (687)
                      |.+|...|++++-+++|.-+++..|.+|..
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            999999999999999999999999998744

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.05  E-value=0.094  Score=46.42  Aligned_cols=60  Identities=23%  Similarity=0.412  Sum_probs=45.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      .....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345567777777777777777777777777777777777777777777777777777653

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.03  E-value=0.77  Score=40.46  Aligned_cols=77  Identities=23%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             hcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHH
Q 005632          291 SLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED----NIDARLTLASLLLEEAKEEE  366 (687)
Q Consensus       291 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~  366 (687)
                      ..-.-++|...|-.+.....-+++...+.+|..|. ..+.++|+..+-+++++.+.    +++++..|+.++..+|+++.
T Consensus       118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            33345778888877776655668888888888777 46789999999999988543    48899999999999999988


Q ss_pred             HH
Q 005632          367 AI  368 (687)
Q Consensus       367 A~  368 (687)
                      |-
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            75

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=93.89  E-value=0.44  Score=46.34  Aligned_cols=91  Identities=12%  Similarity=0.020  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------ch----------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPN--------LP----------ETYNTLGLAHSALGNHKSAFDFYVIA   94 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--------~~----------~~~~~l~~~~~~~g~~~~A~~~~~~a   94 (687)
                      -....+..|...+++++|..|.--|..+++...+        .+          .+--.+..||+.+++.+-|+....+.
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs  254 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS  254 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence            3444456688888999999888888888875321        00          01223444555555555555555555


Q ss_pred             hccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632           95 AHLSPKDSALWKQLLTFAVQKGDTAQAMY  123 (687)
Q Consensus        95 l~~~p~~~~~~~~la~~~~~~g~~~~A~~  123 (687)
                      +.++|.+..-+..-|.|+..+.+|.+|..
T Consensus       255 I~lnP~~frnHLrqAavfR~LeRy~eAar  283 (569)
T PF15015_consen  255 INLNPSYFRNHLRQAAVFRRLERYSEAAR  283 (569)
T ss_pred             hhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            55555555545555555555555444433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.89  E-value=3.5  Score=36.47  Aligned_cols=75  Identities=19%  Similarity=0.154  Sum_probs=56.0

Q ss_pred             CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC---cHHHHHHHHHHHHHhhcHHHHH
Q 005632          259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD---NGYLYLKLAECYLSLKERAHAI  334 (687)
Q Consensus       259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~  334 (687)
                      .-+.|...|-.+-....-++++..+.+|..|. ..+.++++.++.++++...++   +++++..++.++..+|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            44667777777655444457788888887776 667888888888888774433   7888889999999999888874

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.82  E-value=1.8  Score=34.20  Aligned_cols=91  Identities=16%  Similarity=0.058  Sum_probs=48.3

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCc----------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc---CCC----c
Q 005632          180 FLKCGQTARSIGILEEYLKVHPSDAD----------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS---GKE----L  242 (687)
Q Consensus       180 ~~~~g~~~~A~~~~~~~~~~~p~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~----~  242 (687)
                      .+.-|-|++|...++++.+....-+.          ...+..|+..+...|+|++++..-++++..+..   -+.    .
T Consensus        19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl   98 (144)
T PF12968_consen   19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL   98 (144)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence            44557777777777777765322211          123456777777888888877777777655321   111    1


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632          243 PLKLKVKAGICYLRLGNMEKAEILFADL  270 (687)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~  270 (687)
                      ...+.+..+..+...|..++|+..|+.+
T Consensus        99 WIaaVfsra~Al~~~Gr~~eA~~~fr~a  126 (144)
T PF12968_consen   99 WIAAVFSRAVALEGLGRKEEALKEFRMA  126 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            1223334455555555555555555543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.76  E-value=0.55  Score=33.94  Aligned_cols=63  Identities=13%  Similarity=0.189  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHH---HHHHHHHcCChHHHHHHHHHHh
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNT---LGLAHSALGNHKSAFDFYVIAA   95 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~~~~al   95 (687)
                      .+...+.+|.-++...+.++|+..++++++..++.++-+..   +..+|...|+|.+++.+..+-+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888889999999999999999888776665444   4456677788887777654433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.72  E-value=0.58  Score=48.15  Aligned_cols=94  Identities=10%  Similarity=0.079  Sum_probs=66.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632           72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus        72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      -+-|.-.++..+|..++++|...+...|.+      ......++.||....+.+.|.++++.+-+.+|.++-.....-.+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            334555667777777777777777665543      23455677777777788888888888877777777777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHh
Q 005632          146 YVEIGDYEKAAESYEQIQKL  165 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~  165 (687)
                      ....|.-++|+.+.......
T Consensus       438 ~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  438 FLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHhcchHHHHHHHHHHHhh
Confidence            77777777777777766654

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=93.69  E-value=6.8  Score=37.47  Aligned_cols=171  Identities=16%  Similarity=0.105  Sum_probs=110.9

Q ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-----ch-hhHHH
Q 005632          210 DLLVAILMENNAYEKTLQHIEHAQIVRF--SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-----AI-DHADL  281 (687)
Q Consensus       210 ~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~-~~~~~  281 (687)
                      ..++.+|...++|.+|+......+....  ++...-..++..-...|....+..+|...+..+....     |+ -....
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            3678889999999999988887776543  2333445666677788888888888888888764421     21 12223


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhccC--CCcHHHH---HHHHHHHHHhhcHHH--HHHHHHHHHHhcCCCHHHHHHH
Q 005632          282 ITEVADTLMSLGHSNSALKYYHFLETNAG--TDNGYLY---LKLAECYLSLKERAH--AIMFFYKALDRFEDNIDARLTL  354 (687)
Q Consensus       282 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~---~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l  354 (687)
                      -..-|.++....+|..|..+|=++.+.-.  .++..+.   -.+-.|-...+..++  ++-.-+.+++....+.++....
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav  291 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV  291 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence            33446666777899999999888776411  1222322   222223333444444  4444556677666778888888


Q ss_pred             HHHHHHc--CCHHHHHHhcCCCCcCCcc
Q 005632          355 ASLLLEE--AKEEEAITLLSPPKDLDSL  380 (687)
Q Consensus       355 a~~~~~~--g~~~~A~~~~~~a~~~~~~  380 (687)
                      +..+.+.  .+++.|+.-|..-+..+|.
T Consensus       292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  292 AEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            8887654  5788999888877766663

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=93.26  E-value=11  Score=38.41  Aligned_cols=98  Identities=13%  Similarity=0.063  Sum_probs=57.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ  178 (687)
Q Consensus        99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  178 (687)
                      |-+...+..+-.++.....+.-....+.+++... .+..+++.++.+|... ..++-....++..+.+-++...-..|+.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            3344444444455544444555555556666543 3555666677777666 4455566666666666666666666666


Q ss_pred             HHHHcCChHHHHHHHHHHHHh
Q 005632          179 LFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       179 ~~~~~g~~~~A~~~~~~~~~~  199 (687)
                      .|.. ++...+..+|.+++..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yr  160 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYR  160 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHH
Confidence            6555 6666666666666554

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.15  E-value=12  Score=38.69  Aligned_cols=160  Identities=16%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             cCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-----------
Q 005632          115 KGDTAQAMYYIRQAIRA------------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL-----F-----------  166 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~-----------  166 (687)
                      ...|++|...|.-+...            .|-+.+.+..++.+...+|+.+-|....++++=.     .           
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            34588888888887764            3566788999999999999999988888887632     1           


Q ss_pred             -----CCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhc
Q 005632          167 -----PDNVD---ATKTGAQLFLKCGQTARSIGILEEYLKVHPS-DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF  237 (687)
Q Consensus       167 -----p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  237 (687)
                           |.|-.   +++.....+.+.|-+.-|.++++-+++++|. ++-. +.+.+-....+..+|.--+..++..-....
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~-~l~~ID~~ALrareYqwiI~~~~~~e~~n~  409 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG-ILYLIDIYALRAREYQWIIELSNEPENMNK  409 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh-HHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence                 22222   2334445567789999999999999999998 6542 444444445566777777776666533211


Q ss_pred             cCCCchHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhCc
Q 005632          238 SGKELPLKLKVKAGICYLRLGN---MEKAEILFADLQWKNA  275 (687)
Q Consensus       238 ~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~  275 (687)
                      -..-.+...-..++..|.....   -..|...+.+++...|
T Consensus       410 l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  410 LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            0011122223345555655554   4667777777776655

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.15  E-value=0.42  Score=47.93  Aligned_cols=89  Identities=18%  Similarity=0.085  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI---GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      +....|+..|.+++...|.....+.+.+.++++.   |+.-.|+.-...+++++|....+++.|++++...+++.+|+..
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            4466788888888888888888888888887764   4666777778888888888888999999999999999999988


Q ss_pred             HHHHHHhCCCCC
Q 005632          193 LEEYLKVHPSDA  204 (687)
Q Consensus       193 ~~~~~~~~p~~~  204 (687)
                      ...+....|.+.
T Consensus       468 ~~alq~~~Ptd~  479 (758)
T KOG1310|consen  468 HWALQMSFPTDV  479 (758)
T ss_pred             HHHHhhcCchhh
Confidence            888887788665

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.04  E-value=12  Score=38.41  Aligned_cols=64  Identities=22%  Similarity=0.129  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhc---CC----CHHHHHHHHHHHHHcCC-HHHHHHhcCCCCcCCc
Q 005632          316 LYLKLAECYLSLKERAHAIMFFYKALDRF---ED----NIDARLTLASLLLEEAK-EEEAITLLSPPKDLDS  379 (687)
Q Consensus       316 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~  379 (687)
                      -++.+|.++..+|+...|..+|...++..   ..    .|-+++.+|.++...|. ..++..++.+|.+...
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~  522 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS  522 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence            34567778888888888888888777431   11    26677888888888877 8888888887776553

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=1.2  Score=46.06  Aligned_cols=91  Identities=11%  Similarity=0.154  Sum_probs=61.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDI------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      |.-.++..+|..+++.|...+...|.+.      .....++.||....+.+.|.++++++-+.+|.++-.......+...
T Consensus       361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~  440 (872)
T KOG4814|consen  361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA  440 (872)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            4455666677777777777776555442      3455667777777777777777777777777777666666666666


Q ss_pred             cCChHHHHHHHHHHHHh
Q 005632          183 CGQTARSIGILEEYLKV  199 (687)
Q Consensus       183 ~g~~~~A~~~~~~~~~~  199 (687)
                      .|.-++|+.........
T Consensus       441 E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  441 EDKSEEALTCLQKIKSS  457 (872)
T ss_pred             hcchHHHHHHHHHHHhh
Confidence            77777777766665544

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.83  E-value=0.28  Score=45.60  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH-LASFYVEIGDYEKAAESYEQIQKLFPDNVDATK  174 (687)
Q Consensus        98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  174 (687)
                      .|+++..|...+......|-+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+++..+|++|..|.
T Consensus       103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence            45555555555555555555555556666666666666555554 333444555566666666666666666555544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.82  E-value=12  Score=37.68  Aligned_cols=137  Identities=14%  Similarity=0.075  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+...-......+..|+.-.|-.-+..++...|.+|......+.+....|+|+.+...+.-+-..-.....+...+-...
T Consensus       288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~  367 (831)
T PRK15180        288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL  367 (831)
T ss_pred             chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence            33333334455678999999999999999999999999999999999999999999988766554444455666677788


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      ...|++++|.....-++...-+++++...-+......|-++++...+++.+.++|..
T Consensus       368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            899999999999998888777788887777777888899999999999999988753

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=92.78  E-value=8.3  Score=35.89  Aligned_cols=274  Identities=14%  Similarity=0.060  Sum_probs=153.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhC--CCCHHH
Q 005632           72 NTLGLAHSALGNHKSAFDFYVIAAHLSP--------KDSALWKQLLTFAVQKGDTAQAMYYIRQAI---RAE--PKDISL  138 (687)
Q Consensus        72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~---~~~--p~~~~~  138 (687)
                      ..++.-....+++++|+..|.+.+....        ........++.+|...|++..--+.....-   ...  |.....
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            4567777888999999999999987621        123457789999999998765544443322   211  222222


Q ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCCcHH
Q 005632          139 RIHLASFY-VEIGDYEKAAESYEQIQKLFPDNV------DATKTGAQLFLKCGQTARSIGILEEYLKV----HPSDADLS  207 (687)
Q Consensus       139 ~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~  207 (687)
                      ...+..-. .....++.-+..+..+++......      ..-..++.+++..|+|.+|+.....++..    +....-..
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~  166 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT  166 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence            22222221 223445556666666555432221      23345678889999999999887766542    21111112


Q ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHhcc-CCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch--hhHHHH
Q 005632          208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFS-GKE--LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI--DHADLI  282 (687)
Q Consensus       208 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~  282 (687)
                      ++..-..+|....+..++...+..+...... --|  ....+-..-|..+....+|.-|..+|-++.+....  .+..+.
T Consensus       167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc  246 (421)
T COG5159         167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC  246 (421)
T ss_pred             hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence            4556677888888888887777766544211 112  22233344466677778899999998888765432  122221


Q ss_pred             ---HHHHHHHHhcCChHHHHHHHHH--hhhccCCCcHHHHHHHHHHHH--HhhcHHHHHHHHHHHHHhcC
Q 005632          283 ---TEVADTLMSLGHSNSALKYYHF--LETNAGTDNGYLYLKLAECYL--SLKERAHAIMFFYKALDRFE  345 (687)
Q Consensus       283 ---~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~p  345 (687)
                         ..+-..-...+..++.-..++.  .++........++...+..+.  .+.+|..|+..|..-+..+|
T Consensus       247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~  316 (421)
T COG5159         247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS  316 (421)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence               1111122223333443333321  111112334455555565554  34568888888887665554

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.77  E-value=8.9  Score=36.43  Aligned_cols=148  Identities=11%  Similarity=0.016  Sum_probs=78.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005632          107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT  186 (687)
Q Consensus       107 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~  186 (687)
                      .+-....+..+..+-++....+++++|....++..++.-  ...-..+|...++++++....    .+....-....|..
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~  262 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQ  262 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccc
Confidence            344444555666667777777888888877777776653  223356677777777764321    11122222222222


Q ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHH
Q 005632          187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEIL  266 (687)
Q Consensus       187 ~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  266 (687)
                      .+|.      .+.+ .+....+-..++.+..++|+..+|++.++...+.++  -..-..++-++...+....-|.+...+
T Consensus       263 ~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p--l~t~lniheNLiEalLE~QAYADvqav  333 (556)
T KOG3807|consen  263 HEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP--LLTMLNIHENLLEALLELQAYADVQAV  333 (556)
T ss_pred             hhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221      1122 222223455677788888888888888877766521  111223344455555555444444444


Q ss_pred             HHH
Q 005632          267 FAD  269 (687)
Q Consensus       267 ~~~  269 (687)
                      +-+
T Consensus       334 Lak  336 (556)
T KOG3807|consen  334 LAK  336 (556)
T ss_pred             HHh
Confidence            433

>PRK12798 chemotaxis protein; Reviewed

Probab=92.60  E-value=12  Score=37.29  Aligned_cols=269  Identities=13%  Similarity=0.054  Sum_probs=168.8

Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHH---HHHHH----HHh------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632           30 LSPGVTKMLGEASLQYAYGNFEQAIS---LLKEV----VRL------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH   96 (687)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~g~~~~A~~---~~~~~----l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   96 (687)
                      .|-+...-++..+--...|+..--..   ++.++    ...      +|.|..+    +.+|...|--...++.   ++.
T Consensus        33 ~PyelvRSLQ~lQD~Va~Gd~~A~~~Qr~LL~~i~~~l~aa~~~vw~dprNv~A----a~iy~lSGGnP~vlr~---L~~  105 (421)
T PRK12798         33 EPYKLVRSLQLLQDSVAAGDHSAHEMQRFLLGTIDERLRAADPEVWDDPRNVDA----ALIYLLSGGNPATLRK---LLA  105 (421)
T ss_pred             CcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCCHHHhCCccchhH----HHhhHhcCCCHHHHHH---HHH
Confidence            34455555666666667777643321   22222    122      3333333    4556555555544443   333


Q ss_pred             cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCH---
Q 005632           97 LSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRA-EPKDISLRIHLAS-FYVEIGDYEKAAESYEQIQKLFPDNV---  170 (687)
Q Consensus        97 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~p~~~---  170 (687)
                      .++. +.+.-..-|..-+-.|+-.++...+..+-.. .|.....+..|.. ......+...|+..|..+-=..|...   
T Consensus       106 ~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEE  185 (421)
T PRK12798        106 RDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEE  185 (421)
T ss_pred             cCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHH
Confidence            3332 4445555566777889999998888765432 2333334444433 34566789999999999998888753   


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 005632          171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVK  249 (687)
Q Consensus       171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  249 (687)
                      -++..-..+....|+.+++..+-.+.+.....++-. ..+..........++-. -...+...+..+.  .+....+|..
T Consensus       186 AALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d--~~~q~~lYL~  262 (421)
T PRK12798        186 AALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMD--PERQRELYLR  262 (421)
T ss_pred             HHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcC--chhHHHHHHH
Confidence            345555566788999999999999999888777642 12223333444433222 2233555555543  4566788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhhCc---hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          250 AGICYLRLGNMEKAEILFADLQWKNA---IDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       250 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      ++..-.-.|+.+-|...-++++....   .+...+..+.+....-..++++|++.+..+-..
T Consensus       263 iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~  324 (421)
T PRK12798        263 IARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD  324 (421)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence            99999999999999988888765432   235556666677777788899999998766543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.56  E-value=0.27  Score=30.86  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCch
Q 005632          534 CLIIDLCKALASLQRYEEASEIINLSMRLAYNILPL  569 (687)
Q Consensus       534 ~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~  569 (687)
                      .++..++.++...|++++|+.++++++.+....++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~   38 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIRERLLGP   38 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcc
Confidence            456789999999999999999999999876654433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.54  E-value=0.31  Score=30.53  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632          315 YLYLKLAECYLSLKERAHAIMFFYKALDR  343 (687)
Q Consensus       315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  343 (687)
                      .++.++|.+|...|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46778888888888888888888888875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.42  E-value=1.7  Score=33.56  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          247 KVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       247 ~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      ...++.++...|++++|+..+++++
T Consensus        44 ll~lA~~~~~~G~~~~A~~~l~eAi   68 (94)
T PF12862_consen   44 LLNLAELHRRFGHYEEALQALEEAI   68 (94)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3334444444444444444444443

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.31  E-value=2.5  Score=47.91  Aligned_cols=165  Identities=16%  Similarity=0.184  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHcCChHHHHH------HHH-HHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 005632           71 YNTLGLAHSALGNHKSAFD------FYV-IAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA--------EPKD  135 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~------~~~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~p~~  135 (687)
                      ....|......|.+.+|.+      .+. ..-.+.|.....+..++.++...|++++|+..-.++.-.        .|+.
T Consensus       935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen  935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred             hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence            4455656666666666666      343 222335666677777777777777777777776665432        2334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----
Q 005632          136 ISLRIHLASFYVEIGDYEKAAESYEQIQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS-----  202 (687)
Q Consensus       136 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----  202 (687)
                      ...+.+++...+..++...|+..+.++..+        .|.-.....+++.++...++++.|+.+++.+.+.+..     
T Consensus      1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred             HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence            455666666667777777777777666654        2222334456666666677777777777777664311     


Q ss_pred             CC-cHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          203 DA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       203 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      .. ....+..++.++...+++..|....+....+
T Consensus      1095 ~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred             chhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence            11 1123444555555555555555555444433

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=92.31  E-value=11  Score=35.97  Aligned_cols=195  Identities=9%  Similarity=-0.002  Sum_probs=101.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch
Q 005632          142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA  221 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~  221 (687)
                      +.....+..+..+-++.-..+++++|....++..++.--  ..-..+|.+.++++++.....      +...+.....|.
T Consensus       190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~------yr~sqq~qh~~~  261 (556)
T KOG3807|consen  190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI------YRQSQQCQHQSP  261 (556)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH------HhhHHHHhhhcc
Confidence            333444445555556666666666666666665555422  223445556666655533211      111111111111


Q ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-hhHHHHHHHHHHHHhcCChHHHHH
Q 005632          222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSNSALK  300 (687)
Q Consensus       222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~  300 (687)
                      ..+|.      .   ..+......+...++.|..++|+..+|++.++.+....|- ....+..++...+.+..-|.+...
T Consensus       262 ~~da~------~---rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa  332 (556)
T KOG3807|consen  262 QHEAQ------L---RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA  332 (556)
T ss_pred             chhhh------h---hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111      0   0111222344557899999999999999999998776652 133455667777777777776666


Q ss_pred             HHHHhhhccCCCcHHHHHHHHHHHH-------------Hhhc---HHHHHHHHHHHHHhcCCCHHHHHH
Q 005632          301 YYHFLETNAGTDNGYLYLKLAECYL-------------SLKE---RAHAIMFFYKALDRFEDNIDARLT  353 (687)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~la~~~~-------------~~g~---~~~A~~~~~~al~~~p~~~~~~~~  353 (687)
                      .+-+.-+...|..+...+.-+.+-.             +.|-   -..|++...++++.+|.-+..++.
T Consensus       333 vLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE  401 (556)
T KOG3807|consen  333 VLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE  401 (556)
T ss_pred             HHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence            6655555545555544443322211             1111   123566666777777766655443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=14  Score=36.42  Aligned_cols=195  Identities=12%  Similarity=0.057  Sum_probs=119.5

Q ss_pred             HHHcchHHHHHHHHHHHHHHhccC-----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hCchhhHHHHHHH
Q 005632          216 LMENNAYEKTLQHIEHAQIVRFSG-----KELPLKLKVKAGICYLRLGNMEKAEILFADLQW-----KNAIDHADLITEV  285 (687)
Q Consensus       216 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l  285 (687)
                      ++.++++.+|...-+..+......     +-.....++.+..++...|+...-...+...+.     .+........+.+
T Consensus       136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L  215 (493)
T KOG2581|consen  136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL  215 (493)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence            344567777766665554331111     112345566777777777876666655555432     2222355566777


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhc---cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHH------HHHHHH
Q 005632          286 ADTLMSLGHSNSALKYYHFLETN---AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA------RLTLAS  356 (687)
Q Consensus       286 a~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la~  356 (687)
                      -..|...+.|+.|-....+..-.   .+...+..++.+|.+..-+++|..|.+++-+++...|.+...      ...+..
T Consensus       216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~iv  295 (493)
T KOG2581|consen  216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIV  295 (493)
T ss_pred             HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHH
Confidence            88889999999999888665521   011245667889999999999999999999999999975321      122333


Q ss_pred             HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Q 005632          357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLC  426 (687)
Q Consensus       357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  426 (687)
                      +-.-+|++.+=.-+-+.....               ....|+.|..+- +.|+..+..+.+++.-.+...
T Consensus       296 v~ll~geiPers~F~Qp~~~k---------------sL~~Yf~Lt~AV-r~gdlkkF~~~leq~k~~f~~  349 (493)
T KOG2581|consen  296 VELLLGEIPERSVFRQPGMRK---------------SLRPYFKLTQAV-RLGDLKKFNETLEQFKDKFQA  349 (493)
T ss_pred             HHHHcCCCcchhhhcCccHHH---------------HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhh
Confidence            344457665533332221111               224677777764 677777776666666555433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.87  E-value=2.4  Score=43.47  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=47.9

Q ss_pred             HHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCC
Q 005632          215 ILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGH  294 (687)
Q Consensus       215 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  294 (687)
                      .....++++++........-.    +..+.......+..+.+.|-++.|+...+         +++..+.+   ..+.|+
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll----~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~rFeL---Al~lg~  333 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLL----PNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDHRFEL---ALQLGN  333 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTG----GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHH---HHHCT-
T ss_pred             HHHHcCChhhhhhhhhhhhhc----ccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHHHhHH---HHhcCC
Confidence            334456666655554321111    12223334455555666666666654432         22222322   345666


Q ss_pred             hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632          295 SNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA  340 (687)
Q Consensus       295 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  340 (687)
                      .+.|.+..      ...+++..|..+|.....+|+++-|.++|+++
T Consensus       334 L~~A~~~a------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  334 LDIALEIA------KELDDPEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHC------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHH------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            66666554      13345556666666666666666666666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.87  E-value=22  Score=38.68  Aligned_cols=249  Identities=13%  Similarity=0.069  Sum_probs=131.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q 005632           74 LGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRAE-PKDISLRIHLASFYVEIGD  151 (687)
Q Consensus        74 l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~  151 (687)
                      .-.+..+..-|+-|+...+.- ..+++. ...+...|.-++..|++++|...|-+.+..- |...-      .-+.....
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~  412 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQR  412 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHH
Confidence            344556667777777665442 223332 3556778888899999999999998887642 21111      11122223


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHcchHHHHHHHHH
Q 005632          152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS-VIDLLVAILMENNAYEKTLQHIE  230 (687)
Q Consensus       152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~la~~~~~~~~~~~A~~~~~  230 (687)
                      ..+-..+++...+..-.+.+-...|-.+|.++++.++-.+..++    .+ ...+. -....-.++...+-.++|.-.-.
T Consensus       413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~  487 (933)
T KOG2114|consen  413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CD-KGEWFFDVETALEILRKSNYLDEAELLAT  487 (933)
T ss_pred             HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence            33334455555555444555556777888888887765554443    33 11110 01123344444455555544433


Q ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 005632          231 HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG  310 (687)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  310 (687)
                      +.-.        ..   ..+-.++...++|++|+.++..+-   ++.........|..++... +++-...+-+......
T Consensus       488 k~~~--------he---~vl~ille~~~ny~eAl~yi~slp---~~e~l~~l~kyGk~Ll~h~-P~~t~~ili~~~t~~~  552 (933)
T KOG2114|consen  488 KFKK--------HE---WVLDILLEDLHNYEEALRYISSLP---ISELLRTLNKYGKILLEHD-PEETMKILIELITELN  552 (933)
T ss_pred             Hhcc--------CH---HHHHHHHHHhcCHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHhhcC
Confidence            3221        11   123345567788999998888762   2334455566677666543 4444444443332211


Q ss_pred             -CCcHHHH----HHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632          311 -TDNGYLY----LKLAECYLSLKERAHAIMFFYKALDRFEDNID  349 (687)
Q Consensus       311 -~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  349 (687)
                       +......    ...-.+..-.+++..-..+++...+..|+.++
T Consensus       553 ~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e  596 (933)
T KOG2114|consen  553 SQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE  596 (933)
T ss_pred             CCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence             1111111    11222334456677666666667777666543

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.43  E-value=16  Score=36.09  Aligned_cols=143  Identities=15%  Similarity=0.077  Sum_probs=99.3

Q ss_pred             CCCChhHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHh----CCC-----chHHHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632           28 NKLSPGVTKMLGE--ASLQYAYGNFEQAISLLKEVVRL----SPN-----LPETYNTLGLAHSALGNHKSAFDFYVIAAH   96 (687)
Q Consensus        28 ~~~~~~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~~----~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   96 (687)
                      .++++++..++..  ...++.+.++.+|..+-+..+..    +-.     .+..|+.+..+|...|+...-...+...+.
T Consensus       118 k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr  197 (493)
T KOG2581|consen  118 KPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR  197 (493)
T ss_pred             CCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            4566677776654  34445568999999888877643    111     345688888888888887766666655443


Q ss_pred             c-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           97 L-----SP-KDSALWKQLLTFAVQKGDTAQAMYYIRQAIR--AEP--KDISLRIHLASFYVEIGDYEKAAESYEQIQKLF  166 (687)
Q Consensus        97 ~-----~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  166 (687)
                      .     +. ........+-+.|...+.|+.|.....+..-  ...  .....++.+|.+..-+++|..|.+++-+++...
T Consensus       198 tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  198 TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            2     11 1234456677888888999999888777642  111  224567889999999999999999999999999


Q ss_pred             CCCH
Q 005632          167 PDNV  170 (687)
Q Consensus       167 p~~~  170 (687)
                      |.+.
T Consensus       278 pq~~  281 (493)
T KOG2581|consen  278 PQHA  281 (493)
T ss_pred             cchh
Confidence            9753

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.31  E-value=2.9  Score=32.24  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          209 IDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       209 ~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      ...++.++...|++++|+..+++++.+
T Consensus        44 ll~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen   44 LLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            344555555555555555555555554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.93  E-value=5.2  Score=37.82  Aligned_cols=64  Identities=19%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632          102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL  165 (687)
Q Consensus       102 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  165 (687)
                      ..++..++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|+++-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4556777778888888888888888888888888888888888888888888888888877664

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.72  E-value=3.6  Score=38.26  Aligned_cols=64  Identities=16%  Similarity=0.206  Sum_probs=37.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      +=..+...++++.|..+.++.+.++|.++.-+...|.+|.+.|.+.-|+..++..++..|+++.
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            3344555555666666666666666666555555666666666666666666665555555543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=90.05  E-value=17  Score=34.36  Aligned_cols=32  Identities=9%  Similarity=-0.041  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 005632          331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEA  362 (687)
Q Consensus       331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  362 (687)
                      ..-.+.|+..++.+|........+|..|....
T Consensus       211 ~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  211 KKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred             HHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence            33344455556667777777778888887644

; PDB: 3LKU_E 2WPV_G.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.80  E-value=0.53  Score=25.92  Aligned_cols=20  Identities=25%  Similarity=0.101  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHcCChHHHHHH
Q 005632           71 YNTLGLAHSALGNHKSAFDF   90 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~   90 (687)
                      .+.+|.++...|++++|...
T Consensus         4 ~~~la~~~~~~G~~~eA~~~   23 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERL   23 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHH
Confidence            33444444444444444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.41  E-value=0.5  Score=25.99  Aligned_cols=15  Identities=27%  Similarity=0.253  Sum_probs=5.7

Q ss_pred             HHHHHHHhhcHHHHH
Q 005632          320 LAECYLSLKERAHAI  334 (687)
Q Consensus       320 la~~~~~~g~~~~A~  334 (687)
                      +|.++...|++++|.
T Consensus         7 la~~~~~~G~~~eA~   21 (26)
T PF07721_consen    7 LARALLAQGDPDEAE   21 (26)
T ss_pred             HHHHHHHcCCHHHHH
Confidence            333333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=89.33  E-value=5.7  Score=40.06  Aligned_cols=62  Identities=21%  Similarity=0.278  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH--HHHHH--HHHHHHcCChHHHHHHHHHHhcc
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE--TYNTL--GLAHSALGNHKSAFDFYVIAAHL   97 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--~~~~~~~g~~~~A~~~~~~al~~   97 (687)
                      ..+.++..++..++|..|...++.+...-|....  .+..+  |..+...-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4567899999999999999999999986344333  34444  44556788999999999987764

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.23  E-value=1.6  Score=40.54  Aligned_cols=74  Identities=16%  Similarity=0.005  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           71 YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        71 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      ..++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+++.+-.....
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            34445566777888888888888888888888888888888888888888888888888888888766544443

>PF13041 PPR_2: PPR repeat family

Probab=89.19  E-value=1.8  Score=28.47  Aligned_cols=43  Identities=16%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHH
Q 005632          279 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA  321 (687)
Q Consensus       279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la  321 (687)
                      ...|..+...+.+.|++++|.++|+++.+..-+.+...+..+-
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li   45 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI   45 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            3445555556666666666666666655544444444444433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.02  E-value=2.3  Score=40.05  Aligned_cols=80  Identities=16%  Similarity=0.203  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632           50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAI  129 (687)
Q Consensus        50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  129 (687)
                      |..=+...++.++.  ....++..++..+...|+++.++..+++.+..+|.+...|..+-..|...|+...|+..|+++-
T Consensus       137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            66666666666654  3467899999999999999999999999999999999999999999999999999999999987


Q ss_pred             Hh
Q 005632          130 RA  131 (687)
Q Consensus       130 ~~  131 (687)
                      ..
T Consensus       215 ~~  216 (280)
T COG3629         215 KT  216 (280)
T ss_pred             HH
Confidence            74

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.91  E-value=1.8  Score=26.09  Aligned_cols=16  Identities=25%  Similarity=0.225  Sum_probs=5.5

Q ss_pred             HHHHHHcCCHHHHHHH
Q 005632          109 LTFAVQKGDTAQAMYY  124 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~  124 (687)
                      |..+...|++++|+..
T Consensus         8 a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    8 AYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHhhHHHHHHH
Confidence            3333333333333333

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.83  E-value=1.8  Score=26.17  Aligned_cols=32  Identities=16%  Similarity=0.003  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHH--HHHHHHhcCC
Q 005632          315 YLYLKLAECYLSLKERAHAIMF--FYKALDRFED  346 (687)
Q Consensus       315 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~p~  346 (687)
                      +.++.+|..+..+|++++|+..  |.-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            3455666666777777777777  3355555554

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=88.66  E-value=15  Score=31.77  Aligned_cols=170  Identities=15%  Similarity=0.123  Sum_probs=100.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-----cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc-----C
Q 005632           47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA-----LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK-----G  116 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g  116 (687)
                      +.+|++|..+|..--+.+. .+...+.+|..++.     .++...|++.+..+..  .+.+.+...+|.++..-     +
T Consensus        48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~  124 (248)
T KOG4014|consen   48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA  124 (248)
T ss_pred             HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence            5578888887776544332 45666666665542     4567888888888876  45666777777666532     2


Q ss_pred             C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          117 D--TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       117 ~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      +  .++|.+++.++..+.  +..+.+.|...++.-.  ++       +....|.... -...+..+.-..+.+.|.++--
T Consensus       125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~-p~~~~~~~~~~kDMdka~qfa~  192 (248)
T KOG4014|consen  125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGK-PLDRAELGSLSKDMDKALQFAI  192 (248)
T ss_pred             CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCC-CcchhhhhhhhHhHHHHHHHHH
Confidence            3  678888888887754  5566666666655432  11       1111231100 0122334444567788888777


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHc----chHHHHHHHHHHHHHH
Q 005632          195 EYLKVHPSDADLSVIDLLVAILMEN----NAYEKTLQHIEHAQIV  235 (687)
Q Consensus       195 ~~~~~~p~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~  235 (687)
                      ++-++..-    .+..++.+.|..-    .+.++|..+-.++.++
T Consensus       193 kACel~~~----~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~  233 (248)
T KOG4014|consen  193 KACELDIP----QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI  233 (248)
T ss_pred             HHHhcCCh----HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence            77666422    1344555555432    4567777777777665

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.74  E-value=31  Score=34.28  Aligned_cols=145  Identities=11%  Similarity=0.093  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC------------ChHHHHHHHHHHhccCCCCH
Q 005632           36 KMLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALG------------NHKSAFDFYVIAAHLSPKDS  102 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~al~~~p~~~  102 (687)
                      ..+..-......|.| +++++.-.+.+..+|+...+|...-.++...-            -.++-+.+...++..+|+..
T Consensus        30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY  109 (421)
T KOG0529|consen   30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY  109 (421)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence            344444445556665 45777777788889987776665444433221            23344445555555666666


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632          103 ALWKQLLTFAVQKGD--TAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTG  176 (687)
Q Consensus       103 ~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l  176 (687)
                      .+|.....++.+.+.  +..=+...+++++.+|.+..+|...=.+...    .....+=+++..+++..++.|..+|...
T Consensus       110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyR  189 (421)
T KOG0529|consen  110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYR  189 (421)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHH
Confidence            666666666555442  4555556666666666555444332222211    1223444555555555555555555555


Q ss_pred             HHHH
Q 005632          177 AQLF  180 (687)
Q Consensus       177 a~~~  180 (687)
                      ..++
T Consensus       190 s~lL  193 (421)
T KOG0529|consen  190 SLLL  193 (421)
T ss_pred             HHHH
Confidence            4443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.40  E-value=2.8  Score=41.09  Aligned_cols=53  Identities=19%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 005632          107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY  159 (687)
Q Consensus       107 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  159 (687)
                      .+..||...++.+-|+....+.+-++|....-+...|.++..+.+|.+|-..+
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSa  285 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSA  285 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666555555666666665555555443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.39  E-value=1.3  Score=27.05  Aligned_cols=29  Identities=31%  Similarity=0.224  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Q 005632          315 YLYLKLAECYLSLKERAHAIMFFYKALDR  343 (687)
Q Consensus       315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  343 (687)
                      .++..+|.+-...++|++|+..|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677888888888888888888888765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=87.06  E-value=28  Score=33.01  Aligned_cols=25  Identities=12%  Similarity=0.013  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHH
Q 005632          169 NVDATKTGAQLFLKCGQTARSIGIL  193 (687)
Q Consensus       169 ~~~~~~~la~~~~~~g~~~~A~~~~  193 (687)
                      ++..+..+|..+.+.|++.+|..+|
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHH
Confidence            4555666666666666555555544

; PDB: 3LKU_E 2WPV_G.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=86.35  E-value=32  Score=35.37  Aligned_cols=95  Identities=14%  Similarity=0.016  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC-----
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS------LRIHLASFYVEIGDY-------EKAAESYEQIQKLF-----  166 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~g~~-------~~A~~~~~~~~~~~-----  166 (687)
                      ...+|+.++..|+|+.|...|+.+.+-.-++..      +.-..|.++...+..       +....+++.+....     
T Consensus       211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~  290 (414)
T PF12739_consen  211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL  290 (414)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence            457899999999999999999988875433321      122233333333321       12233333322211     


Q ss_pred             ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632          167 ------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       167 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  199 (687)
                            .....+....+.++...|.+.+|...+-+....
T Consensus       291 ~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  291 PRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             cccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence                  112344556666777777777776666555544

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.25  E-value=1.3  Score=27.15  Aligned_cols=27  Identities=26%  Similarity=0.269  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAH   96 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~   96 (687)
                      ++..+|.+-+..++|++|+.-|.+++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            444555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=86.23  E-value=7.1  Score=28.45  Aligned_cols=53  Identities=13%  Similarity=0.151  Sum_probs=26.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHH
Q 005632           75 GLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL---LTFAVQKGDTAQAMYYIRQ  127 (687)
Q Consensus        75 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~  127 (687)
                      |.-++...+.++|+..+.++++..++.+.-+..+   ..++...|+|.+.+.+..+
T Consensus        13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555556666655555554444333322   3344555555555544433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.21  E-value=30  Score=32.54  Aligned_cols=22  Identities=9%  Similarity=0.110  Sum_probs=11.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVR   62 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~   62 (687)
                      ..+++..|+..+|+..++.-+.
T Consensus        17 ~rl~l~~~~~~~Av~q~~~H~~   38 (247)
T PF11817_consen   17 CRLYLWLNQPTEAVRQFRAHID   38 (247)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH
Confidence            4455555555555555555443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=85.76  E-value=59  Score=35.55  Aligned_cols=226  Identities=12%  Similarity=0.105  Sum_probs=135.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 005632           48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV---QKGDTAQAMYY  124 (687)
Q Consensus        48 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~  124 (687)
                      |.-+.=+..++.-+.+++.+...+..|..++...|++++-...-.++.++.|..+..|.....-..   ..++..++...
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL  172 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence            344555667777777888888889999999999999998888888888888988888887654433   33677888889


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHH
Q 005632          125 IRQAIRAEPKDISLRIHLASFYV-------EIGDYEKAAESYEQIQKLFPDN-------VDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       125 ~~~a~~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~  190 (687)
                      |++++.-. .++..|...+....       ..++++.-...|.+++..-...       ...+...-..|...-..++-+
T Consensus       173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~  251 (881)
T KOG0128|consen  173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI  251 (881)
T ss_pred             HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            99988643 44555555554443       4466777888888888653322       234445555565555556677


Q ss_pred             HHHHHHHHhCCCCCcHHH--HHHHH--H-HHHHcchHHHHHHHHHHHHHHhc---cCCCchHHHHHHHHHHHHHcCCHHH
Q 005632          191 GILEEYLKVHPSDADLSV--IDLLV--A-ILMENNAYEKTLQHIEHAQIVRF---SGKELPLKLKVKAGICYLRLGNMEK  262 (687)
Q Consensus       191 ~~~~~~~~~~p~~~~~~~--~~~la--~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~  262 (687)
                      .++...+... -+.+...  |....  . ......+++.|...+.+.+..+.   ...+.....+..+.......|++..
T Consensus       252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r  330 (881)
T KOG0128|consen  252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR  330 (881)
T ss_pred             HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence            7777766654 3322111  11111  1 11223344444444333332211   1133334445555566666677666


Q ss_pred             HHHHHHHHhhhCc
Q 005632          263 AEILFADLQWKNA  275 (687)
Q Consensus       263 A~~~~~~~~~~~~  275 (687)
                      -...++++....+
T Consensus       331 i~l~~eR~~~E~~  343 (881)
T KOG0128|consen  331 IQLIEERAVAEMV  343 (881)
T ss_pred             HHHHHHHHHHhcc
Confidence            6666666554443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.18  E-value=3.2  Score=34.67  Aligned_cols=50  Identities=28%  Similarity=0.315  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN   83 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~   83 (687)
                      ...++..|...+..|++.-|..+.+.++..+|++..+...++.++..+|.
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            44566778888888888888888888888888888888888877766553

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=84.99  E-value=33  Score=31.93  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632          139 RIHLASFYVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus       139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                      +..+|.+....|+|++.+.++++++..+|.
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e   33 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE   33 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence            344556666666666666666666665443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF12854 PPR_1: PPR repeat

Probab=84.96  E-value=1.6  Score=25.97  Aligned_cols=28  Identities=11%  Similarity=0.067  Sum_probs=24.5

Q ss_pred             hHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005632          393 NEKIIMKLCHIYRAKGMPEDFVDAIFPL  420 (687)
Q Consensus       393 ~~~~~~~la~~~~~~g~~~~A~~~~~~~  420 (687)
                      +..++..+...|.+.|+.++|.+.+.++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3358899999999999999999998875

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=84.65  E-value=39  Score=32.55  Aligned_cols=189  Identities=12%  Similarity=0.079  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHH
Q 005632          152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH  231 (687)
Q Consensus       152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  231 (687)
                      -++|+..-.-...+.|..++++-.++.+.+...+..         -..+++ .....+..--......+-.+++...+.+
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~-G~~vlL~dQDr~lW~r~lI~eg~all~r  281 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDAD-GEPVLLEDQDRSLWDRALIDEGLALLDR  281 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCC-CCeeeccccchhhhhHHHHHHHHHHHHH
Confidence            567888888888888988888877777665432211         111111 1100011111122334456778888888


Q ss_pred             HHHHhccCCCchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632          232 AQIVRFSGKELPLKLKVKAGICYLR-----LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE  306 (687)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  306 (687)
                      +... .  .+.+..+.-.++-++..     .-+|..-..+|.-+....|  ++.+-.+.+.......-...++...+.+.
T Consensus       282 A~~~-~--~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap--SPvV~LNRAVAla~~~Gp~agLa~ve~L~  356 (415)
T COG4941         282 ALAS-R--RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP--SPVVTLNRAVALAMREGPAAGLAMVEALL  356 (415)
T ss_pred             HHHc-C--CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC--CCeEeehHHHHHHHhhhHHhHHHHHHHhh
Confidence            8766 2  23333444444444433     2356666677776665555  56666667777777777788888887766


Q ss_pred             hcc-CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632          307 TNA-GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA  355 (687)
Q Consensus       307 ~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  355 (687)
                      ... -.+....+...|.++.++|+.++|...|++++.+.++..+..+...
T Consensus       357 ~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~  406 (415)
T COG4941         357 ARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ  406 (415)
T ss_pred             cccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            441 1234456677899999999999999999999999988776655443

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.53  E-value=14  Score=36.58  Aligned_cols=127  Identities=8%  Similarity=0.090  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 005632           49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG--NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAM  122 (687)
Q Consensus        49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~  122 (687)
                      -+++-+.+...++..+|+...+|+....++.+.+  ++..=+....++++.+|.+..+|...=.+...    .....+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            5677788888999999999999999999998776  46788999999999999988777654333322    22356678


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005632          123 YYIRQAIRAEPKDISLRIHLASFYVE------IGD------YEKAAESYEQIQKLFPDNVDATKT  175 (687)
Q Consensus       123 ~~~~~a~~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~~~~~~~~~p~~~~~~~~  175 (687)
                      ++..+++..++.+..+|.....++..      .|+      ...-++....++-.+|++..+|+.
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence            88899999999999998887766652      231      234455566667778888877765

>PF13041 PPR_2: PPR repeat family

Probab=84.53  E-value=4  Score=26.78  Aligned_cols=27  Identities=22%  Similarity=0.276  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632          247 KVKAGICYLRLGNMEKAEILFADLQWK  273 (687)
Q Consensus       247 ~~~l~~~~~~~~~~~~A~~~~~~~~~~  273 (687)
                      +..+...+.+.|++++|.++|+++...
T Consensus         6 yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    6 YNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            444444455555555555555555443

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.19  E-value=1.4e+02  Score=39.02  Aligned_cols=116  Identities=10%  Similarity=-0.044  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHH---HHHHHHHhcC-ChHHHHHHHHHhhhc--cCCCcHHHHH
Q 005632          245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLIT---EVADTLMSLG-HSNSALKYYHFLETN--AGTDNGYLYL  318 (687)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~~~  318 (687)
                      ++....|.+..+.|-++.++..+.++.....-+..++..   .-+.++.... ....+++..+..--.  .....+..+.
T Consensus      2737 ~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~ 2816 (3550)
T KOG0889|consen 2737 WAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFT 2816 (3550)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHH
Confidence            445556677777888888888888876543322333332   2234444433 555666665432211  1234567788


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 005632          319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE  360 (687)
Q Consensus       319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  360 (687)
                      ..|....+.|+.++|-..|..|++++-.-+.+|...|.....
T Consensus      2817 lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2817 LKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred             hhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            899999999999999999999999998888888887765443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.59  E-value=2  Score=27.36  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=13.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHH
Q 005632          174 KTGAQLFLKCGQTARSIGILEEYL  197 (687)
Q Consensus       174 ~~la~~~~~~g~~~~A~~~~~~~~  197 (687)
                      +.+|..|..+|+.+.|...++.++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            345555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=83.34  E-value=34  Score=31.80  Aligned_cols=59  Identities=15%  Similarity=0.353  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH-cCChHHHHHHHHHH
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPN-LPETYNTLGLAHSA-LGNHKSAFDFYVIA   94 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~a   94 (687)
                      .++..|....+.|+|++.+.++++++..+|. +.+-...+..+|-. .|....+...+...
T Consensus         3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~   63 (236)
T PF00244_consen    3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI   63 (236)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence            4677899999999999999999999999876 34445555555532 34444444444433

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=82.88  E-value=3.3  Score=23.82  Aligned_cols=30  Identities=20%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             hcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632          328 KERAHAIMFFYKALDRFEDNIDARLTLASL  357 (687)
Q Consensus       328 g~~~~A~~~~~~al~~~p~~~~~~~~la~~  357 (687)
                      |+.+.+...|++++...|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            456778888888888888888877776654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=82.74  E-value=1.6  Score=25.17  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             CCCcchhHHHHHHHhhCCCCchhhHHHHHHH
Q 005632          587 TDPNHGFDCAKYILQLHPYSLSAWNCYYKVL  617 (687)
Q Consensus       587 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  617 (687)
                      |+.+.+...+..++...|.++.+|..+....
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            4567788899999999999999998887654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.55  E-value=6.6  Score=37.77  Aligned_cols=62  Identities=19%  Similarity=0.263  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           53 AISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        53 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      |+.+|.+++...|++...+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            55667777777777777777777777777777777777766665443345555555555544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.36  E-value=63  Score=36.83  Aligned_cols=133  Identities=14%  Similarity=-0.001  Sum_probs=86.9

Q ss_pred             HHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632          211 LLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM  290 (687)
Q Consensus       211 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  290 (687)
                      ...+++...+-.+.+.+.-.++++..+++.|........+-..+...|.+-+|...+-+...  .......+..+..+++
T Consensus       988 kv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen  988 KVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLF 1065 (1480)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHH
Confidence            44566677788888888888899888877777777777777778888888888776655322  1224556677778888


Q ss_pred             hcCChHH------------HHH-HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHH-HHHHHHHHhcC
Q 005632          291 SLGHSNS------------ALK-YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAI-MFFYKALDRFE  345 (687)
Q Consensus       291 ~~g~~~~------------A~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p  345 (687)
                      +.|.++.            -.. +++.+-....-.....|..+-..+...+++.+|- -.|+.+..+..
T Consensus      1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred             hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence            8776543            222 2222222222234445555556677888887765 46777776644

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.22  E-value=60  Score=32.83  Aligned_cols=60  Identities=22%  Similarity=0.184  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIR--------AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  164 (687)
                      ...|.+++.-.|||..|++.++..--        ..+-...+++..|-+|+.+++|.+|+..|..++-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566788889999999888765311        1122345688889999999999999998888764

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.16  E-value=26  Score=35.36  Aligned_cols=18  Identities=22%  Similarity=0.337  Sum_probs=12.4

Q ss_pred             HhhcHHHHHHHHHHHHHh
Q 005632          326 SLKERAHAIMFFYKALDR  343 (687)
Q Consensus       326 ~~g~~~~A~~~~~~al~~  343 (687)
                      ..|+|+.|+..+=+++++
T Consensus       253 ~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  253 AQGRYDDAVARLYRALEL  270 (379)
T ss_pred             hcCCHHHHHHHHHHHHHH
Confidence            467777777777776664

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.28  E-value=7.1  Score=36.53  Aligned_cols=58  Identities=19%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Q 005632          175 TGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQI  234 (687)
Q Consensus       175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  234 (687)
                      ..+..|...|.+.+|+++.++++..+|-+..  .+..+..++...|+--.+++.|++...
T Consensus       284 kva~~yle~g~~neAi~l~qr~ltldpL~e~--~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQ--DNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHhhcChhhhH--HHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            3445555555555555555555555555543  344555555555555555555554443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.66  E-value=20  Score=32.17  Aligned_cols=62  Identities=24%  Similarity=0.262  Sum_probs=56.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS  102 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  102 (687)
                      ...+++.+...+|+...+.-++..|.+......+-..+.-.|+|++|...++-+-.+.|++.
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            34567788999999999999999999999999999999999999999999999999998764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.61  E-value=35  Score=35.70  Aligned_cols=100  Identities=17%  Similarity=0.159  Sum_probs=54.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM  122 (687)
Q Consensus        43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  122 (687)
                      .+...|+++.|...+-.+    |  .+.....+..+..+|-.++|++       +.++. .-.+   .+..+.|+++.|.
T Consensus       595 t~vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL~-------~s~D~-d~rF---elal~lgrl~iA~  657 (794)
T KOG0276|consen  595 TLVLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQALE-------LSTDP-DQRF---ELALKLGRLDIAF  657 (794)
T ss_pred             HHhhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhhh-------cCCCh-hhhh---hhhhhcCcHHHHH
Confidence            344566666666544332    1  2233444555555555544443       33321 1122   2345667777776


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632          123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus       123 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  164 (687)
                      +...++     ++..-|..||.+....|++..|.+++.++..
T Consensus       658 ~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  658 DLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             HHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            554433     4455677777777777777777777776643

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=80.54  E-value=74  Score=32.77  Aligned_cols=173  Identities=12%  Similarity=0.043  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      .+..+-.++...-.+.-....+.+++... .+..+++.++.||... ..++-...+++.++.+-++...-..++..|.. 
T Consensus        68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-  144 (711)
T COG1747          68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-  144 (711)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence            33333344434444444555566666544 4567788999999888 55777888999999888888888888888777 


Q ss_pred             CCHHHHHHHHHHHHHhCCC---CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHH
Q 005632          150 GDYEKAAESYEQIQKLFPD---NV---DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE  223 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~---~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~  223 (687)
                      ++-+.+..+|.+++...-.   +.   ++|..+-.  +--.+.+.-.....+...........-++..+-.-|....++.
T Consensus       145 ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~  222 (711)
T COG1747         145 IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT  222 (711)
T ss_pred             hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence            8889999999998865321   11   22222211  1123344444444433333322221112222334455566777


Q ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHH
Q 005632          224 KTLQHIEHAQIVRFSGKELPLKLKVKAG  251 (687)
Q Consensus       224 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~  251 (687)
                      +|+..+...++.    +..+..+.-.+.
T Consensus       223 eai~Ilk~il~~----d~k~~~ar~~~i  246 (711)
T COG1747         223 EAIRILKHILEH----DEKDVWARKEII  246 (711)
T ss_pred             HHHHHHHHHhhh----cchhhhHHHHHH
Confidence            777777777776    555555444443

>PF12854 PPR_1: PPR repeat

Probab=80.13  E-value=4.5  Score=23.95  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=12.6

Q ss_pred             cHHHHHHHHHHHHHhhcHHHHHHHHH
Q 005632          313 NGYLYLKLAECYLSLKERAHAIMFFY  338 (687)
Q Consensus       313 ~~~~~~~la~~~~~~g~~~~A~~~~~  338 (687)
                      +...|..+...|.+.|+.++|.+.|+
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33444444455555555555554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	687
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-11
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		5e-04
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-09
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-08
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-06
2pl2_A	217	Crystal Structure Of Ttc0263: A Thermophilic Tpr Pr		6e-06
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		8e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-04
1zbp_A	273	X-Ray Crystal Structure Of Protein Vpa1032 From Vib		2e-04
3pe3_A	723	Structure Of Human O-Glcnac Transferase And Its Com		5e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 65/120 (54%)
Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G++++AI   ++ + L P   E +  LG A+   G++  A ++Y  A  L P+ +  W  
Sbjct: 15  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74
Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
           L     ++GD  +A+ Y ++A+  +P+      +L + Y + GDY++A E Y++  +L P
Sbjct: 75  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 51/101 (50%)
Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164
           W  L     ++GD  +A+ Y ++A+  +P+      +L + Y + GDY++A E Y++  +
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
           L P + +A       + K G    +I   ++ L++ P  A+
Sbjct: 64  LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 58/110 (52%)
Query: 66  NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI 125
           N  E +  LG A+   G+++ A ++Y  A  L P +++ W  L     ++GD  +A+ Y 
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 126 RQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175
           ++A+  +P +        + Y + GDY+KA E Y++  +L P+N  A + 
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 97  LSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
           + P +SA  WK L     ++GD  +A+ Y ++A+  +P + S   +L + Y + GDY+KA
Sbjct: 3   MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204
            E Y++  +L P+N  A       + K G   ++I   ++ L++ P++A
Sbjct: 63  IEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNA 111

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 66  NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI 125
           N  E +  LG A+   G++  A ++Y  A  L P ++  W  L     ++GD  +A+ Y 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 126 RQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175
           ++A+   P +     +L + Y + GDY++A E Y++  +L+P+N +A + 
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQN 116

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 97  LSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
           + P +SA  W  L     ++GD  +A+ Y ++A+   P +     +L + Y + GDY++A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
            E Y++  +L+P+N +A       + K G    +I   ++ L+++P++A+
Sbjct: 63  IEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 66  NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI 125
           N  E +  LG A+   G++  A ++Y  A  L P ++  W  L     ++GD  +A+ Y 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 126 RQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175
           ++A+  +P +     +L + Y + GDY++A E Y++  +L P+N +A + 
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 97  LSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
           + P +SA  W  L     ++GD  +A+ Y ++A+  +P +     +L + Y + GDY++A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
            E Y++  +L P+N +A       + K G    +I   ++ L++ P++A+
Sbjct: 63  IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein In Thermus Thermophilus Hb27 Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 45  YAYGNFEQAISLLKEVVRLSPNLPE-------TYNTLGLAHSALGNHKSA-------FDF 90
           YA G ++ A++L +  ++ +P  PE       T   LGL + AL N K+           
Sbjct: 16  YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG 75
Query: 91  YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150
           Y++   LS    AL++Q       KG   QA+  ++ A R  P+   L +     Y  +G
Sbjct: 76  YMV---LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132
Query: 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV 208
           + +KA  S +Q   L  D  +     A+L+L  G+   ++    + L+  P D DL V
Sbjct: 133 ERDKAEASLKQALAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV 189

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 58/132 (43%)
Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A + Y  G  + AI   +  + L P+ P+ Y  L  A    G+   A D Y  A  L P 
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
            +     L     ++G+  +A+   R+A+   P+  +   +LAS   + G  ++A   Y+
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 161 QIQKLFPDNVDA 172
           +  ++ P   DA
Sbjct: 364 EAIRISPTFADA 375

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 97  LSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
           + P +SA  W  L     ++GD  +A+ Y ++A+  +P +     +L + Y + GDY++A
Sbjct: 3   MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 156 AESYEQIQKLFPDNVDATKT 175
            E Y++  +L P+N +A + 
Sbjct: 63  IEYYQKALELDPNNAEAKQN 82

>pdb|1ZBP|A Chain A, X-Ray Crystal Structure Of Protein Vpa1032 From Vibrio Parahaemolyticus. Northeast Structural Genomics Consortium Target Vpr44 Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164
           WK     A+ +G   QA+  + +AI+A PKD SLR          GD+E+A E   Q  K
Sbjct: 4   WKN----ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLXQSIK 59
Query: 165 LFPD 168
           LFP+
Sbjct: 60  LFPE 63

>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 57/132 (43%)
Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A+++   GN E+A+ L ++ + + P     ++ L       G  + A   Y  A  +SP 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
            +  +  +     +  D   A+    +AI+  P       +LAS + + G+  +A  SY 
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135
Query: 161 QIQKLFPDNVDA 172
              KL PD  DA
Sbjct: 136 TALKLKPDFPDA 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	687
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-23
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-21
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-18
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	7e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-16
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-13
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-17
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-14
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-14
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-10
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-10
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	8e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-09
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-04
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	6e-08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	5e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	7e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	7e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	6e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-04
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	7e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  101 bits (253), Expect = 4e-23
 Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 32/340 (9%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           +S+ +     +++       ++ +P L E Y+ LG  +   G  + A + Y  A  L P 
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
               +  L    V  GD   A+     A++  P    +R  L +    +G  E+A   Y 
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220
           +  +  P+   A      +F   G+   +I   E+ + + P+  D      L  +L E  
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--AYINLGNVLKEAR 217

Query: 221 AYEKTLQHIEHAQIVRFSGKELPLKLK---VKA----GICYLRLGNMEKAEILFADLQWK 273
            +++ +     A           L L              Y   G ++ A   +     +
Sbjct: 218 IFDRAVAAYLRA-----------LSLSPNHAVVHGNLACVYYEQGLIDLAIDTY-----R 261

Query: 274 NAI----DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLK 328
            AI       D    +A+ L   G    A   Y   L       +      LA       
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLANIKREQG 319

Query: 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
               A+  + KAL+ F +   A   LAS+L ++ K +EA+
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =   99 bits (250), Expect = 9e-23
 Identities = 66/340 (19%), Positives = 115/340 (33%), Gaps = 32/340 (9%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A  +Y  G+FE A     ++ R  P+       L   H        +  F  +A   +P 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
            +  +  L     ++G   +A+ + R A+R +P  I   I+LA+  V  GD E A ++Y 
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220
              +  PD          L    G+   +     + ++  P+ A       L  +     
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV--AWSNLGCVFNAQG 183

Query: 221 AYEKTLQHIEHAQIVRFSGKELPLKLK---VKA----GICYLRLGNMEKAEILFADLQWK 273
                + H E A           + L    + A    G         ++A   +      
Sbjct: 184 EIWLAIHHFEKA-----------VTLDPNFLDAYINLGNVLKEARIFDRAVAAY-----L 227

Query: 274 NAI----DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLK 328
            A+    +HA +   +A      G  + A+  Y   +E          Y  LA       
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP--HFPDAYCNLANALKEKG 285

Query: 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
             A A   +  AL     + D+   LA++  E+   EEA+
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 82.6 bits (205), Expect = 5e-17
 Identities = 56/318 (17%), Positives = 111/318 (34%), Gaps = 52/318 (16%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G+ E A+      ++ +P+L    + LG    ALG  + A   Y+ A    P  +  W  
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
           L      +G+   A+++  +A+  +P  +   I+L +   E   +++A  +Y +   L P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227
           ++       A ++ + G    +I      +++ P   D               AY     
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---------------AY----- 274

Query: 228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DHADLIT 283
                                         G++ +AE  +       A+     HAD + 
Sbjct: 275 --------------------CNLANALKEKGSVAEAEDCY-----NTALRLCPTHADSLN 309

Query: 284 EVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342
            +A+     G+   A++ Y   LE     +    +  LA       +   A+M + +A+ 
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

Query: 343 RFEDNIDARLTLASLLLE 360
                 DA   + + L E
Sbjct: 368 ISPTFADAYSNMGNTLKE 385

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 24/104 (23%), Positives = 44/104 (42%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G+  +A       +RL P   ++ N L       GN + A   Y  A  + P+ +A    
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 151
           L +   Q+G   +A+ + ++AIR  P       ++ +   E+ D
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 52/233 (22%)

Query: 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201
           LA    + GD+E A     Q+ +  PDN       + +  +C +  RS       +K +P
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64

Query: 202 SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 261
             A+                         ++ +                G  Y   G ++
Sbjct: 65  LLAEA------------------------YSNL----------------GNVYKERGQLQ 84

Query: 262 KAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYL 316
           +A   +     ++A+    D  D    +A  L++ G    A++ Y   L+ N   D   +
Sbjct: 85  EAIEHY-----RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP--DLYCV 137

Query: 317 YLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAIT 369
              L     +L     A   + KA++   +   A   L  +   + +   AI 
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  100 bits (251), Expect = 1e-22
 Identities = 58/346 (16%), Positives = 112/346 (32%), Gaps = 55/346 (15%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
            A G    A+S     V   P+    Y        A+G  K+A         L    +A 
Sbjct: 37  LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA 96

Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLASFYVEI 149
             Q     +++G   +A    ++ +++ P +               +      A      
Sbjct: 97  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156

Query: 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209
           GDY  A    ++I ++   + +  +  A+ F+K G+  ++I  L+   K+   + +    
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--F 214

Query: 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM-------EK 262
             +  +  +   +E +L  +              LKL      C+     +       E 
Sbjct: 215 YKISTLYYQLGDHELSLSEVREC-----------LKLDQDHKRCFAHYKQVKKLNKLIES 263

Query: 263 AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE 322
           AE L  D ++ +A                     S +K     E +          ++  
Sbjct: 264 AEELIRDGRYTDATSKY----------------ESVMK----TEPSIAEYTVRSKERICH 303

Query: 323 CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           C+   ++   AI    + L    DN++A    A   L E   +EAI
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 349

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 54/347 (15%), Positives = 105/347 (30%), Gaps = 49/347 (14%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A++  A G  + A+  L +V++L  +        G      G    A D +      +P 
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 101 DSALWK---------------QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF 145
           ++   +                    A   GD   A+ ++ + +     D  LR   A  
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

Query: 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
           +++ G+  KA    +   KL  DN +A    + L+ + G    S+  + E LK+      
Sbjct: 187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ---- 242

Query: 206 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI 265
                                   +H +      +   L   +++    +R G    A  
Sbjct: 243 ------------------------DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278

Query: 266 LFA---DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLA 321
            +      +   A         +            A++     L+     DN       A
Sbjct: 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP--DNVNALKDRA 336

Query: 322 ECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           E YL  +    AI  +  A +  E++   R  L        + ++  
Sbjct: 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 16/184 (8%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
             +A   +  G++  AI+ L +++ +     E            G  + A      A+ L
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206

Query: 98  SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP------------KDISLRIHLASF 145
              ++  + ++ T   Q GD   ++  +R+ ++ +             K ++  I  A  
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266

Query: 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTG----AQLFLKCGQTARSIGILEEYLKVHP 201
            +  G Y  A   YE + K  P   + T          F K  +   +I +  E L++ P
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326

Query: 202 SDAD 205
            + +
Sbjct: 327 DNVN 330

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 46/302 (15%), Positives = 90/302 (29%), Gaps = 72/302 (23%)

Query: 68  PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ 127
              +++ G+       +  +             D     +L    +  G  A A+     
Sbjct: 3   HHHHHSSGVDLGTENLYFQS-----------MADVEKHLELGKKLLAAGQLADALSQFHA 51

Query: 128 AIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187
           A+  +P +       A+ ++ +G  + A     ++ +L  D   A      L LK G+  
Sbjct: 52  AVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLD 111

Query: 188 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK 247
            +    ++ LK +PS+ +                 E   Q I+  ++ R           
Sbjct: 112 EAEDDFKKVLKSNPSENE---------------EKEAQSQLIKSDEMQRL---------- 146

Query: 248 VKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET 307
               +     G+            +  AI   D I EV                      
Sbjct: 147 RSQALNAFGSGD------------YTAAIAFLDKILEVCV-------------------- 174

Query: 308 NAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEA 367
                +  L    AEC++   E   AI     A     DN +A   +++L  +    E +
Sbjct: 175 ----WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230

Query: 368 IT 369
           ++
Sbjct: 231 LS 232

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 4/145 (2%)

Query: 34  VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET----YNTLGLAHSALGNHKSAFD 89
           + K++  A      G +  A S  + V++  P++ E        +    S       A  
Sbjct: 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316

Query: 90  FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149
                  + P +    K      + +    +A+     A      D  +R  L      +
Sbjct: 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376

Query: 150 GDYEKAAESYEQIQKLFPDNVDATK 174
              +K         K      +  K
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIK 401

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 15/128 (11%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
               +AI +  EV+++ P+          A+     +  A   Y  A   +  D  + + 
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKD---------ISLRIH--LASFYVEIGDYEKA- 155
           L         + +  YY    ++   K          ++L+ H        E    EK  
Sbjct: 369 LEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428

Query: 156 ---AESYE 160
              A + E
Sbjct: 429 IDIAAAKE 436

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 95.4 bits (238), Expect = 2e-21
 Identities = 57/342 (16%), Positives = 111/342 (32%), Gaps = 47/342 (13%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
            A G    A+S     V   P+    Y        A+G  K+A         L    +A 
Sbjct: 14  LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA 73

Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLASFYVEI 149
             Q     +++G   +A    ++ +++ P +               +      A    + 
Sbjct: 74  RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133

Query: 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209
            DY  A    ++I ++   + +  +  A+ F+K G+  ++I  L+   K+   + +    
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE--AF 191

Query: 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD 269
             +  +  +   +E +L  +              LKL      C+     ++K   L   
Sbjct: 192 YKISTLYYQLGDHELSLSEVREC-----------LKLDQDHKRCFAHYKQVKKLNKLI-- 238

Query: 270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF---LETNAGTDNGYLYLKLAECYLS 326
                         E A+ L+  G    A   Y      E +          ++  C+  
Sbjct: 239 --------------ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK 284

Query: 327 LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
            ++   AI    + L    DN++A    A   L E   +EAI
Sbjct: 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 66.1 bits (162), Expect = 9e-12
 Identities = 31/187 (16%), Positives = 68/187 (36%), Gaps = 18/187 (9%)

Query: 36  KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA 95
           ++  +A   +   ++  AI+ L +++ +     E            G  + A      A+
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181

Query: 96  HLSPKDSALWKQL-LTFAVQKGDTAQAMYYIRQAIRAEP------------KDISLRIHL 142
            L   ++  + ++   +  Q GD   ++  +R+ ++ +             K ++  I  
Sbjct: 182 KLKSDNTEAFYKISTLYY-QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240

Query: 143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG----AQLFLKCGQTARSIGILEEYLK 198
           A   +  G Y  A   YE + K  P   + T          F K  +   +I I  E L+
Sbjct: 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300

Query: 199 VHPSDAD 205
           + P + +
Sbjct: 301 MEPDNVN 307

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 38/143 (26%)

Query: 34  VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPET----YNTLGLAHSALGNHKSAFD 89
           + K++  A      G +  A S  + V++  P++ E        +    S       A  
Sbjct: 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293

Query: 90  FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI 149
                                                + ++ EP +++     A  Y+  
Sbjct: 294 IC----------------------------------SEVLQMEPDNVNALKDRAEAYLIE 319

Query: 150 GDYEKAAESYEQIQKLFPDNVDA 172
             Y++A + YE  Q+   ++   
Sbjct: 320 EMYDEAIQDYEAAQEHNENDQQI 342

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 29/236 (12%)

Query: 135 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194
           D+   + L    +  G    A   +       PDN  A    A +FL  G++  ++  L 
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICY 254
           + + +               +L++    ++     +             LK         
Sbjct: 62  KVIALKMDFTA--ARLQRGHLLLKQGKLDEAEDDFKKV-----------LKSNPSEQEEK 108

Query: 255 LRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDN 313
                + KA+ +                   A          +A+ +    LE      +
Sbjct: 109 EAESQLVKADEMQRLRSQ-------------ALDAFDGADYTAAITFLDKILEVCV--WD 153

Query: 314 GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAIT 369
             L    AEC++   E   AI     A     DN +A   +++L  +    E +++
Sbjct: 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 96.1 bits (239), Expect = 6e-21
 Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 4/211 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
            +  + +  L+  VR  P     +  L  A   +G+  +          L P       +
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
           L      +   A+A   ++QA  A P+   + + L     + G  E AA +Y +  +L P
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227
           +      T   L  +          +            +  ++    +  + +A E+   
Sbjct: 123 EEPYI--TAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

Query: 228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258
               AQ    +    PL          LR+G
Sbjct: 181 ARTRAQ--AIAASVRPLAPTRVRSKGPLRVG 209

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 22/132 (16%), Positives = 42/132 (31%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A  +   G+       ++  + L P  PE    LG        H  A      A+  +P+
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
              +   L       G    A     +A +  P++  +   L ++   + D+        
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149

Query: 161 QIQKLFPDNVDA 172
           Q++      V A
Sbjct: 150 QVRAAVAQGVGA 161

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 22/195 (11%), Positives = 52/195 (26%), Gaps = 49/195 (25%)

Query: 116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT 175
            D  + +  +R A+R  P+D    + LA   + +GD      + ++   L P + +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 176 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV 235
             ++     + A +  +L++     P    +                           + 
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGI------------------------ALWL- 97

Query: 236 RFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMS 291
                          G      G  E A   +       A     +   +  ++ +    
Sbjct: 98  ---------------GHALEDAGQAEAAAAAY-----TRAHQLLPEEPYITAQLLNWRRR 137

Query: 292 LGHSNSALKYYHFLE 306
           L    +       + 
Sbjct: 138 LCDWRALDVLSAQVR 152

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 24/128 (18%), Positives = 45/128 (35%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
             +++      +A  LL++    +P  P     LG A    G  ++A   Y  A  L P+
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
           +  +  QLL +  +  D         Q   A  + +      A    +    E+ A +  
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACART 183

Query: 161 QIQKLFPD 168
           + Q +   
Sbjct: 184 RAQAIAAS 191

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 12/119 (10%)

Query: 258 GNMEKAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTD 312
            +  +  +       + A+            +AD  + +G + +        L  +    
Sbjct: 3   ADGPRELLQL-----RAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--G 55

Query: 313 NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 371
           +     +L     + +  A A +   +A D   ++    L L   L +  + E A    
Sbjct: 56  HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 81.4 bits (201), Expect = 5e-18
 Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
            N E  +  L++ +R +P   E +  LG  +    ++ ++   Y  A  L  +++ L+  
Sbjct: 24  QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83

Query: 108 L---LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164
           L   L +   +  TAQ    I +A+  +  +I+  + LAS      +Y +A E ++++  
Sbjct: 84  LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143

Query: 165 LFPDNVDA 172
           L    ++ 
Sbjct: 144 LNSPRINR 151

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172
             + +    +  ++  IRA P++      L  +Y+   DY  +  +Y Q  +L  +N + 
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 173 TKTGAQLFLKCGQ---TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHI 229
               A +         TA++  ++++ L +  ++     + LL +       Y + ++  
Sbjct: 81  YAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT--ALMLLASDAFMQANYAQAIELW 138

Query: 230 EHAQ 233
           +   
Sbjct: 139 QKVM 142

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 17/132 (12%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 77  AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI 136
             ++  N ++           +P++S  W  L  + + + D + ++   RQA++   ++ 
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 137 SLRIHLASFYVEIGDY---EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193
            L   LA+            +     ++   L  + + A    A         A++I + 
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 194 EEYLKVHPSDAD 205
           ++ + ++    +
Sbjct: 139 QKVMDLNSPRIN 150

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 42/330 (12%), Positives = 85/330 (25%), Gaps = 36/330 (10%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A   Y   +F+    L   V+   P               L      F        L P 
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

Query: 101 DSALWKQL-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 159
           +   W  +   + +       A  Y+ +A   E       I     +    ++++A  +Y
Sbjct: 89  NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY 148

Query: 160 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 219
               +L              +     +  +     + L + P D  +  +  +  +  +N
Sbjct: 149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV--MHEVGVVAFQN 206

Query: 220 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 279
             ++   +    A  +             K       LG+                    
Sbjct: 207 GEWKTAEKWFLDA--LEKIKAIGNEVTVDKWEPLLNNLGH-------------------- 244

Query: 280 DLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFY 338
                       L     AL Y+   L       N   Y  +   +  +    +A+ +F+
Sbjct: 245 --------VCRKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFH 294

Query: 339 KALDRFEDNIDARLTLASLLLEEAKEEEAI 368
            AL    D+  +   L   +     + EA 
Sbjct: 295 TALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 78.5 bits (194), Expect = 7e-16
 Identities = 47/335 (14%), Positives = 95/335 (28%), Gaps = 59/335 (17%)

Query: 48  GNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106
           G++ + + +++ E V       +   +L   H    + K  +    +     P  ++   
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-DYEKAAESYEQIQKL 165
             +   V+     +  Y   + +   P +      +  +Y+ +G   E A     +   L
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 166 FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225
                 A       ++  G +       ++                  A+     AY   
Sbjct: 121 EKTYGPA-------WIAYGHSFAVESEHDQ------------------AM----AAYFTA 151

Query: 226 LQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DHADL 281
            Q           G  LP+      G+ Y    N + AE  F       A+    +   +
Sbjct: 152 AQL--------MKGCHLPMLYI---GLEYGLTNNSKLAERFF-----SQALSIAPEDPFV 195

Query: 282 ITEVADTLMSLGHSNSALKYYH--------FLETNAGTDNGYLYLKLAECYLSLKERAHA 333
           + EV       G   +A K++                     L   L      LK+ A A
Sbjct: 196 MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255

Query: 334 IMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           + +  +AL     N      +  +       E A+
Sbjct: 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 78.1 bits (193), Expect = 9e-16
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 17/195 (8%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
              +QA++      +L          +GL +    N K A  F+  A  ++P+D  +  +
Sbjct: 139 SEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198

Query: 108 LLTFAVQKGDTAQAMYYIRQAIR---------AEPKDISLRIHLASFYVEIGDYEKAAES 158
           +   A Q G+   A  +   A+             K   L  +L     ++  Y +A + 
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258

Query: 159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218
           + Q   L P N         +    G    ++      L +   D          ++ M 
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF--------SVTML 310

Query: 219 NNAYEKTLQHIEHAQ 233
            +  E  +   E   
Sbjct: 311 GHCIEMYIGDSEAYI 325

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 9/129 (6%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLP---------ETYNTLGLAHSALGNHKSAFDFY 91
             + +  G ++ A     + +     +             N LG     L  +  A D++
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 92  VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 151
             A  L P++++ +  +       G+   A+ Y   A+     D      L         
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

Query: 152 YEKAAESYE 160
             +A    +
Sbjct: 320 DSEAYIGAD 328

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 34/337 (10%), Positives = 74/337 (21%), Gaps = 32/337 (9%)

Query: 44  QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA 103
           + A    ++ + +L +   L+P       +      AL   +        A  L+P+   
Sbjct: 82  KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 141

Query: 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163
                             +  + QA    P+ +            +   ++      Q  
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 201

Query: 164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 223
            L P  V A  +            R + +L +   + P       I             +
Sbjct: 202 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV--AIASNGGGKQALETVQ 259

Query: 224 KTLQHIEHAQIVRFSGKELPLKLK---VKA----GICYLRLGNMEKAEILFADLQWKNAI 276
           + L  +  A             L    V A          L  +++   +        A 
Sbjct: 260 RLLPVLCQA-----------HGLTPQQVVAIASNSGGKQALETVQRLLPVL-----CQAH 303

Query: 277 ----DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLKERA 331
                    I        +L      L                           +L+   
Sbjct: 304 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASHDGGKQALETVQ 361

Query: 332 HAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
             +    +A     + + A  +           +  +
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL 398

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 33/339 (9%), Positives = 77/339 (22%), Gaps = 28/339 (8%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
              + A    ++ + +L +   L+P       +      AL   ++       A  L+P+
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
                              + +  + QA    P+ +            +   ++      
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 232

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220
           Q   L P  V A  +            R + +L +   + P       I           
Sbjct: 233 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV--AIASNSGGKQALE 290

Query: 221 AYEKTLQHIEHAQIVRFSGKELPLKLK-------VKAGICYLRLGNMEKAEILFADLQWK 273
             ++ L  +  A             L           G     L  +++       L   
Sbjct: 291 TVQRLLPVLCQA-----------HGLTPQQVVAIASNGGGKQALETVQRLL---PVLCQA 336

Query: 274 NAI--DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLKER 330
           + +       I        +L      L             +             +L+  
Sbjct: 337 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASNGGGKQALETV 394

Query: 331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAIT 369
              +    +A     + + A  +           +  + 
Sbjct: 395 QRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLP 433

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.8 bits (197), Expect = 7e-16
 Identities = 35/340 (10%), Positives = 76/340 (22%), Gaps = 32/340 (9%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
              + A    +  + +L +   L+P       + G    AL   +        A  L+P+
Sbjct: 147 DGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
                              + +  + QA    P+ +            +   ++      
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220
           Q   L P  V A  + +          R + +L +   + P       I           
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVV--AIASNGGGKQALE 324

Query: 221 AYEKTLQHIEHAQIVRFSGKELPLKLK---VKA----GICYLRLGNMEKAEILFADLQWK 273
             ++ L  +  A             L    V A          L  +++   +       
Sbjct: 325 TVQRLLPVLCQA-----------HGLTPQQVVAIASHDGGKQALETVQRLLPVL-----C 368

Query: 274 NAI----DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLK 328
            A     +    I        +L      L             +             +L+
Sbjct: 369 QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASHDGGKQALE 426

Query: 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
                +    +A       + A  +              +
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQL 466

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 35/342 (10%), Positives = 74/342 (21%), Gaps = 34/342 (9%)

Query: 39  GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS 98
           G  +   A   +  A++     + L+P       +      AL   +        A  L+
Sbjct: 45  GGVTAVEAVHAWRNALT--GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 99  PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES 158
           P+                   + +  + QA    P+ +            +   +     
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

Query: 159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218
             Q   L P+ V A  +            R + +L +   + P       I         
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV--AIASNGGGKQA 220

Query: 219 NNAYEKTLQHIEHAQIVRFSGKELPLKLK-------VKAGICYLRLGNMEKAEILFADLQ 271
               ++ L  +  A             L           G     L  +++       L 
Sbjct: 221 LETVQRLLPVLCQA-----------HGLTPQQVVAIASNGGGKQALETVQRLL---PVL- 265

Query: 272 WKNAI----DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLS 326
              A          I   +    +L      L                           +
Sbjct: 266 -CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNGGGKQA 322

Query: 327 LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           L+     +    +A       + A  +           +  +
Sbjct: 323 LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL 364

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 18/156 (11%), Positives = 40/156 (25%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
              ++ + +L +   L+P       +      AL   +        A  L+P+       
Sbjct: 324 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 383

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                       + +  + QA    P+ +            +   ++      Q   L P
Sbjct: 384 NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 443

Query: 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203
             V A  +              +   +  L    +D
Sbjct: 444 QQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 32/333 (9%), Positives = 69/333 (20%), Gaps = 32/333 (9%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
                A  L    ++L           G   +    H           +L+P+       
Sbjct: 18  ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIAS 77

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                       + +  + QA    P+ +            +   ++      Q   L P
Sbjct: 78  HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 137

Query: 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227
           + V A  +              + +L +   + P       I             ++ L 
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV--AIASNGGGKQALETVQRLLP 195

Query: 228 HIEHAQIVRFSGKELPLKLK---VKA----GICYLRLGNMEKAEILFADLQWKNAI---- 276
            +  A             L    V A    G     L  +++   +        A     
Sbjct: 196 VLCQA-----------HGLTPQQVVAIASNGGGKQALETVQRLLPVL-----CQAHGLTP 239

Query: 277 DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLKERAHAIM 335
                I        +L      L                      +    +L+     + 
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNSGGKQALETVQRLLP 297

Query: 336 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
              +A       + A  +           +  +
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 330

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 12/95 (12%), Positives = 25/95 (26%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
              + A    ++ + +L +   L+P       +      AL   +        A  L+P+
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD 135
                                +     A+ A   D
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 83.7 bits (206), Expect = 7e-17
 Identities = 38/245 (15%), Positives = 80/245 (32%), Gaps = 3/245 (1%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A+++   GN E+A+ L ++ + + P     ++ L       G  + A   Y  A  +SP 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
            +  +  +     +  D   A+    +AI+  P       +LAS + + G+  +A  SY 
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS---VIDLLVAILM 217
              KL PD  DA    A               +++ + +     + +    +    ++L 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLY 195

Query: 218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 277
             +   +      H  +       L            L  G +    +         +  
Sbjct: 196 PLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHL 255

Query: 278 HADLI 282
              + 
Sbjct: 256 MQSIP 260

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 76.4 bits (187), Expect = 1e-14
 Identities = 44/298 (14%), Positives = 86/298 (28%), Gaps = 22/298 (7%)

Query: 63  LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122
             P   ++ N L       GN + A   Y  A  + P+ +A    L +   Q+G   +A+
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK 182
            + ++AIR  P       ++ +   E+ D + A + Y +  ++ P   DA    A +   
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

Query: 183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME-------NNAYEKTLQHIEHAQIV 235
            G    +I      LK+ P   D      L   L         +   +K +  +      
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPD--AYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

Query: 236 RFSGKELPLKLKVKAGICYLRLGNMEK-AEILFADLQWKNAIDHADLITEVADTLMSLGH 294
                  P    +       R    E+   +    +   +   +                
Sbjct: 182 NRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVG 241

Query: 295 SNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARL 352
             S+    H           +L   +   +          +F Y        N   ++
Sbjct: 242 YVSSDFGNH--------PTSHLMQSIPGMH----NPDKFEVFCYALSPDDGTNFRVKV 287

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 12/126 (9%)

Query: 251 GICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYYHF-L 305
                  GN+E+A  L+     + A+    + A   + +A  L   G    AL +Y   +
Sbjct: 16  ANIKREQGNIEEAVRLY-----RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 306 ETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEE 365
             +        Y  +      +++   A+  + +A+       DA   LAS+  +     
Sbjct: 71  RISP--TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128

Query: 366 EAITLL 371
           EAI   
Sbjct: 129 EAIASY 134

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 35/333 (10%), Positives = 82/333 (24%), Gaps = 15/333 (4%)

Query: 48  GNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA 103
           G+       + ++  LSP+            G       N   A  +Y  A  L P +  
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163
            +  +    +  GD  + + +  +A+  +P      +  AS    +G++  A      + 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLS 120

Query: 164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEE-YLKVHPSDADLSVIDLLVAILMENNAY 222
                +  + +   +  L           L +   +        + +     I   +   
Sbjct: 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180

Query: 223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF--ADLQWKNAI---- 276
                   +          L            +    + K+  ++               
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240

Query: 277 DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLKERAHAIM 335
           + A  +           +   A       +  +        Y+ LA      +       
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQEFFK 297

Query: 336 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           FF KA+D   +          +       + A 
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 80.5 bits (199), Expect = 5e-16
 Identities = 54/332 (16%), Positives = 108/332 (32%), Gaps = 31/332 (9%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
           +    L  +   +   +S       L  N        G+ H    N   A      + +L
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272

Query: 98  SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157
            P  ++     LT A  K ++ +   + ++A+   P+      H    Y  + DY+ A E
Sbjct: 273 HPTPNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 158 SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 217
            +++ Q L P+NV      A L  K G+   S     E     P+  +  V      IL 
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE--VPTFFAEILT 389

Query: 218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 277
           +   ++  ++  + A            +L+      ++ +G +                 
Sbjct: 390 DRGDFDTAIKQYDIA-----------KRLEEVQEKIHVGIGPL------------IGKAT 426

Query: 278 HADLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLAECYLSLKERAHAIMF 336
                +    T +     N+A+K      E +    +    + LA+  L +++   AI  
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDP--RSEQAKIGLAQLKLQMEKIDEAIEL 484

Query: 337 FYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           F  +        +          E AK ++ +
Sbjct: 485 FEDSAILARTMDEKLQATT--FAEAAKIQKRL 514

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 43/345 (12%), Positives = 97/345 (28%), Gaps = 43/345 (12%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G+ E+ I    + + + P+  +       A+ +LGN   A     + +     D A  + 
Sbjct: 73  GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132

Query: 108 LL-----TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI--------GDYEK 154
           +L       A++  +   +     +  +  P + SL      F   +         +Y+ 
Sbjct: 133 MLERNLNKQAMKVLNENLSKDE-GRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191

Query: 155 AAESYEQIQKLFPDNVDA-TKTGAQLFLK-CGQTARSIGILEEYLKVHPSDADLSVIDLL 212
           A        +      D        L  K        +        +  + A    +   
Sbjct: 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL--ALCYT 249

Query: 213 VAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA----GICYLRLGNMEKAEILFA 268
                  N        ++ +         + L     +     +      N ++    F 
Sbjct: 250 GIFHFLKNNLLDAQVLLQES---------INLHPTPNSYIFLALTLADKENSQEFFKFF- 299

Query: 269 DLQWKNAI----DHADLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLAEC 323
               + A+    ++             L    +A + +      N   +N Y Y++LA  
Sbjct: 300 ----QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACL 353

Query: 324 YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
                +   +  FF +   +F    +     A +L +    + AI
Sbjct: 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI 398

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 44/331 (13%), Positives = 95/331 (28%), Gaps = 29/331 (8%)

Query: 40  EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTL--GLAHSALGNHKSAFDFYVIAAHL 97
           E S      N++ A +LL + ++   +  +    +   L   +   + S      +   L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 98  SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157
               +        F   K +   A   ++++I   P   S  I LA    +  + ++  +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY-IFLALTLADKENSQEFFK 297

Query: 158 SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 217
            +++   L P+         Q++        +    ++   ++P +     I L    L 
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY-PYIQLACL-LY 355

Query: 218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 277
           +   + ++                                       IL     +  AI 
Sbjct: 356 KQGKFTESEAFFNET-----------KLKFPTLPEVPTFFAE-----ILTDRGDFDTAIK 399

Query: 278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFF 337
             D+   +               +                       L  ++   AI   
Sbjct: 400 QYDIAKRL--------EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451

Query: 338 YKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
            KA +    +  A++ LA L L+  K +EAI
Sbjct: 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 55/340 (16%), Positives = 115/340 (33%), Gaps = 27/340 (7%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
           +   NF +AI   +  + L PN P  Y+ +   + + G+ +   +F   A  + P  S  
Sbjct: 36  FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95

Query: 105 WKQLLTFAVQKGDTAQAM-YYIRQAIRAEPKDISLRIHLASFYVEIG---DYEKAAESYE 160
             +  +     G+   AM      ++  +    S+   L     +       E  ++   
Sbjct: 96  LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG 155

Query: 161 QIQKLFPDNVDA--------TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLL 212
           +  ++ P N           +               +  +L + L+   S  D   +   
Sbjct: 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215

Query: 213 VAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW 272
             +    + Y   L        +R +            GI +    N+  A++L      
Sbjct: 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYT----GIFHFLKNNLLDAQVLL----- 266

Query: 273 KNAID---HADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLK 328
           + +I+     +    +A TL    +S    K++   ++ N   +    Y    + Y  L+
Sbjct: 267 QESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP--EYPPTYYHRGQMYFILQ 324

Query: 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           +  +A   F KA     +N+   + LA LL ++ K  E+ 
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 9/110 (8%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
              Q     F  AI LL +   L P   +    L      +     A + +  +A L+  
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150
                 Q  TFA            I++ +RA+P   +      + Y   G
Sbjct: 495 MDEKL-QATTFAEAA--------KIQKRLRADPIISAKMELTLARYRAKG 535

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 82.4 bits (203), Expect = 2e-16
 Identities = 40/341 (11%), Positives = 80/341 (23%), Gaps = 21/341 (6%)

Query: 44  QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA 103
           + A    ++ + +L +   L+P       +      AL   +        A  L P    
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

Query: 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163
                +          + +  + QA    P  +            +   ++      Q  
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAH 321

Query: 164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 223
            L PD V A  +            R + +L +   + P       I             +
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV--AIASNGGGKQALETVQ 379

Query: 224 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN---MEKAEILFADLQWKNAI--DH 278
           + L  +  A             L     +     G    +E  + L   L   + +  D 
Sbjct: 380 RLLPVLCQA-----------HGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428

Query: 279 ADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFF 337
              I        +L      L                           +L+     +   
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLT--PAQVVAIASHDGGKQALETVQQLLPVL 486

Query: 338 YKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLD 378
            +A     D + A  +        A  +  + +L     L 
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.1 bits (171), Expect = 2e-12
 Identities = 18/162 (11%), Positives = 41/162 (25%)

Query: 44  QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA 103
           + A    ++ + +L +   L+        +      AL   +        A  L+P    
Sbjct: 575 KQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVV 634

Query: 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163
                           + +  + QA    P  +            +   ++      Q  
Sbjct: 635 AIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH 694

Query: 164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
            L  + V A  +            R + +L +   + P    
Sbjct: 695 GLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.7 bits (170), Expect = 2e-12
 Identities = 34/337 (10%), Positives = 75/337 (22%), Gaps = 33/337 (9%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
              ++ + +L +   L+P+      + G    AL   +        A  L+P        
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                       + +  + QA    P  +            +   ++      Q   L P
Sbjct: 402 NGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTP 460

Query: 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227
             V A  +            + + +L +   + P       I   +         ++ L 
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVV--AIASNIGGKQALATVQRLLP 518

Query: 228 HIEHAQIVRFSGKELPLKLK-------VKAGICYLRLGNMEKAEILFADLQWKNAI---- 276
            +  A             L           G     L  +++   +        A     
Sbjct: 519 VLCQA-----------HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ-----AHGLTP 562

Query: 277 DHADLITEVADTLMSLGHSNSALKYYH-FLETNAGTDNGYLYLKLAECYLSLKERAHAIM 335
           D    I        +L      L                           +L+     + 
Sbjct: 563 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--QVQVVAIASNIGGKQALETVQRLLP 620

Query: 336 FFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS 372
              +A       + A  +           +  + +L 
Sbjct: 621 VLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLC 657

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 66.6 bits (162), Expect = 2e-11
 Identities = 19/158 (12%), Positives = 42/158 (26%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
              ++ + +L +   L+P+      + G    AL   +        A  L+         
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIAS 604

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
            +          + +  + QA    P  +            +   ++      Q   L P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664

Query: 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
           D V A  +            R + +L +   +      
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVV 702

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 5e-11
 Identities = 34/338 (10%), Positives = 77/338 (22%), Gaps = 28/338 (8%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
              + A    ++ + +L +   L+P       +      AL   +        A  L+P 
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
                   +          + +  + QA    P  +            +   ++      
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220
           Q   L PD V A  +            R + +L +   +          ++     +E  
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETV 615

Query: 221 -----AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275
                   +       AQ+V  +                  L  +++   +        A
Sbjct: 616 QRLLPVLCQAHGL-TPAQVVAIASH----------DGGKQALETVQRLLPVLCQ-----A 659

Query: 276 I----DHADLITEVADTLMSLGHSNSALK-YYHFLETNAGTDNGYLYLKLAECYLSLKER 330
                D    I        +L      L             +             +L+  
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--QEQVVAIASNNGGKQALETV 717

Query: 331 AHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
              +    +A     D + A  +           +  +
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.1 bits (158), Expect = 6e-11
 Identities = 20/155 (12%), Positives = 38/155 (24%)

Query: 51  EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110
               +L    + L+P       +      AL   +        A  L+P           
Sbjct: 175 ASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDG 234

Query: 111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV 170
                    + +  + QA    P  +            +   ++      Q   L PD V
Sbjct: 235 GKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQV 294

Query: 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
            A  +            R + +L +   + P    
Sbjct: 295 VAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.3 bits (156), Expect = 9e-11
 Identities = 36/349 (10%), Positives = 81/349 (23%), Gaps = 24/349 (6%)

Query: 29  KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAF 88
            L+P     +     + A    ++ + +L +   L+P+      +      AL   +   
Sbjct: 390 GLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLL 449

Query: 89  DFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148
                   L+P                    Q +  + QA    P  +            
Sbjct: 450 PVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQA 509

Query: 149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV 208
           +   ++      Q   L PD V A  +            R + +L +   + P    +  
Sbjct: 510 LATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP--DQVVA 567

Query: 209 IDLLVAILMENNAYEKTLQH------IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK 262
           I             ++ L        +   Q+V  +                  L  +++
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASN----------IGGKQALETVQR 617

Query: 263 A-EILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH-FLETNAGTDNGYLYLKL 320
              +L               I        +L      L             D        
Sbjct: 618 LLPVLCQAHGLTP--AQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PDQVVAIASN 673

Query: 321 AECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAIT 369
                +L+     +    +A    ++ + A  +           +  + 
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLP 722

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 6e-07
 Identities = 20/162 (12%), Positives = 38/162 (23%)

Query: 44  QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA 103
           +        A  L    ++L           G   +    H S         +L+P    
Sbjct: 134 RALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVV 193

Query: 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163
                           + +  + QA    P  +            +   ++      Q  
Sbjct: 194 AIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH 253

Query: 164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
            L PD V A  +            R + +L +   + P    
Sbjct: 254 GLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVV 295

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 22/185 (11%), Positives = 59/185 (31%), Gaps = 10/185 (5%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
              ++ + +L +   L+P       +      AL   +           L+         
Sbjct: 749 ETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                       QA+  +++ +    +   L              ++A E+ +++  +  
Sbjct: 809 N-------IGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLC 861

Query: 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227
            +   T              +++  ++  L V   D  L+ +D +VAI   +N  ++ L+
Sbjct: 862 QDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT-LDQVVAIA--SNGGKQALE 918

Query: 228 HIEHA 232
            ++  
Sbjct: 919 TVQRL 923

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 17/143 (11%), Positives = 36/143 (25%), Gaps = 1/143 (0%)

Query: 46  AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW 105
           A    ++ + +L +   L+        +      AL   +        A  L+       
Sbjct: 781 ALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAI 840

Query: 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 165
              +          + +  + Q     P  +            +   ++      Q   L
Sbjct: 841 ASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGL 900

Query: 166 FPDNVDA-TKTGAQLFLKCGQTA 187
             D V A    G +  L+  Q  
Sbjct: 901 TLDQVVAIASNGGKQALETVQRL 923

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 3/130 (2%)

Query: 44  QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-S 102
           + A    ++ + +L +   L+P+      +      AL   +           L+     
Sbjct: 847 KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVV 906

Query: 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162
           A+       A++       +    Q     P  +      +     +   ++      Q 
Sbjct: 907 AIASNGGKQALETVQRLLPVL--CQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQD 964

Query: 163 QKLFPDNVDA 172
             L P+ V A
Sbjct: 965 HGLTPNQVVA 974

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 77.1 bits (190), Expect = 3e-16
 Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 17/201 (8%)

Query: 37  MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETY----------------NTLGLAHSA 80
           ML + S     G   QA+S  ++ + L+ +  E Y                  L LA+  
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 81  LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI 140
             N+  A+ FY      +P +    +      V +G    A+    + ++ E  +++  I
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126

Query: 141 HLASFYVEIGDYEKAA-ESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV 199
            L ++Y    + EK   E+  +          A        L   +  ++   L++ +  
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186

Query: 200 HPSDADLSVIDLLVAILMENN 220
            PS      +D ++ I  E N
Sbjct: 187 FPSTEAQKTLDKILRIEKEVN 207

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 37/207 (17%)

Query: 68  PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ 127
            +       A    G +  A  ++     L+   +                   MYY   
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE------------------MYYWTN 45

Query: 128 AIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA 187
             +       L   LA  Y +  +Y+KA   Y+++ +  P+NVD  +  A++ +  GQ  
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105

Query: 188 RSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK 247
            ++ + E+ L++   +   + I L     +     +K L+                L   
Sbjct: 106 DALRMYEKILQLEADNLAAN-IFLGNYYYLTAEQEKKKLETDYKK-----------LSSP 153

Query: 248 VKA-------GICYLRLGNMEKAEILF 267
            K        G+  L     EKA    
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARNSL 180

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 251 GICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYY-HFL 305
            + Y +  N +KA + +     K  +    ++ D +   A+  +  G    AL+ Y   L
Sbjct: 61  ALAYKKNRNYDKAYLFY-----KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115

Query: 306 ETNAGTDNGYLYLKLAECYLSLKERAH-AIMFFYKALDRFEDNIDARLTLASLLLEEAKE 364
           +  A  DN    + L   Y    E+    +   YK L        AR       L   + 
Sbjct: 116 QLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY 173

Query: 365 EEAITLL 371
           E+A   L
Sbjct: 174 EKARNSL 180

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 259 NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLY 317
           N+++ E+ +     KN+   + L TE+A       + + A  +Y   L+     +N    
Sbjct: 34  NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCL 91

Query: 318 LKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEA 367
              AE  +   +   A+  + K L    DN+ A + L +     A++E+ 
Sbjct: 92  EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 29/231 (12%), Positives = 61/231 (26%), Gaps = 38/231 (16%)

Query: 139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK 198
            +   S  +E G   +A   + Q   L  D  +                          K
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY------------------YWTNVDK 48

Query: 199 VHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG 258
                + L+    L     +N  Y+K     +   + +       L+         +  G
Sbjct: 49  NSEISSKLAT--ELALAYKKNRNYDKAYLFYKEL-LQKAPNNVDCLEAC---AEMQVCRG 102

Query: 259 NMEKAEILFADLQWKNAI----DHADLITEVADTLMSLG-HSNSALKYYH-FLETNAGTD 312
             + A  ++     +  +    D+      + +            L+  +  L +   T 
Sbjct: 103 QEKDALRMY-----EKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TK 155

Query: 313 NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK 363
             Y   +     L       A     K +     + +A+ TL  +L  E +
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKVI-LRFPSTEAQKTLDKILRIEKE 205

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 80.2 bits (198), Expect = 5e-16
 Identities = 51/331 (15%), Positives = 113/331 (34%), Gaps = 38/331 (11%)

Query: 40  EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP 99
           + S   A   FE+ +    E  +L   L  +    G+      +   A +    A  L P
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268

Query: 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 159
           + ++     L  A  + D+ +   Y  +A++ +  + S+  H       + +Y++A + +
Sbjct: 269 RVNSYIYMALIMA-DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327

Query: 160 EQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN 219
           ++ ++L P+N+      A L  +  +      +  E  +  P   +  V +    IL + 
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE--VPNFFAEILTDK 385

Query: 220 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA 279
           N ++K L+  + A           ++L+ K    Y+ +  +     L             
Sbjct: 386 NDFDKALKQYDLA-----------IELENKLDGIYVGIAPLVGKATLLTRNPTVENFI-- 432

Query: 280 DLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFY 338
                             A        + +    +    + LA+  L  ++   AI  F 
Sbjct: 433 -----------------EATNLLEKASKLDP--RSEQAKIGLAQMKLQQEDIDEAITLFE 473

Query: 339 KALDRFEDNIDARLTLASLLLEEAKEEEAIT 369
           ++ D      +    +     E AK ++ I 
Sbjct: 474 ESADLARTMEEKLQAIT--FAEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 49/326 (15%), Positives = 105/326 (32%), Gaps = 25/326 (7%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSA-FDFYVIAAHLSPKDSALWK 106
           G+ ++ + +  + + L P+  +       A+  LG    A FD  V++ +    D+++  
Sbjct: 53  GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112

Query: 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
                 +++    QAM  +++         +    L++   +    ++           F
Sbjct: 113 -----MLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167

Query: 167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL 226
                   T A           S    +E +    +    S      A      A     
Sbjct: 168 FGIFKPELTFANY-------DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220

Query: 227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID---HADLIT 283
           + ++         ++L + L+   GI      +   A         K AI+     +   
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHT-GIFKFLKNDPLGAHEDI-----KKAIELFPRVNSYI 274

Query: 284 EVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD 342
            +A  +     S     Y+   L+ ++  +N  +Y    +    L+    A   F KA +
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDS--NNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332

Query: 343 RFEDNIDARLTLASLLLEEAKEEEAI 368
              +NI   + LA L   E K ++  
Sbjct: 333 LDPENIFPYIQLACLAYRENKFDDCE 358

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 41/370 (11%), Positives = 94/370 (25%), Gaps = 61/370 (16%)

Query: 41  ASLQYAYGNFEQAISLLKEV---VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
           AS     G F  A+  L  +      +    E      L   A+   K  F     A   
Sbjct: 80  ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139

Query: 98  SPKDSAL-------------WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA- 143
             + S                   +                 ++  A+ + ++   +L  
Sbjct: 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199

Query: 144 -----------SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192
                      SF      +E+  +   + +KL      + +              +   
Sbjct: 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259

Query: 193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK---VK 249
           +++ +++ P          +  I+ + N   +   + + A           LKL      
Sbjct: 260 IKKAIELFPRVNSYI---YMALIMADRNDSTEYYNYFDKA-----------LKLDSNNSS 305

Query: 250 A----GICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKY 301
                G     L N ++A   F       A     ++     ++A         +     
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDF-----DKAKELDPENIFPYIQLACLAYRENKFDDCETL 360

Query: 302 YH-FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 360
           +          +   +    AE      +   A+  +  A++         + +A L+ +
Sbjct: 361 FSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418

Query: 361 EAKEEEAITL 370
                   T+
Sbjct: 419 ATLLTRNPTV 428

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
               +      NF +A +LL++  +L P   +    L        +   A   +  +A L
Sbjct: 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478

Query: 98  SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK 134
           +        Q +TFA            ++Q IR++P 
Sbjct: 479 ARTMEEKL-QAITFA--------EAAKVQQRIRSDPV 506

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 80.3 bits (198), Expect = 8e-16
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 15/184 (8%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G  +QAIS      RL       Y  LG+ H  LGN   A ++   +  L   D  L  +
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAE-------PKDISLRIHLASFYVEIGDYEKAAESYE 160
           L   A  K D   A+ + + A+              +   +L   Y ++  Y+ A ++  
Sbjct: 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220
           Q   L  ++ +     A ++L       +I  L E L + P++          A  +   
Sbjct: 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM--------ASDLLKR 592

Query: 221 AYEK 224
           A E+
Sbjct: 593 ALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 79.9 bits (197), Expect = 9e-16
 Identities = 34/270 (12%), Positives = 89/270 (32%), Gaps = 14/270 (5%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A   +    F   +++  +++ + P   + Y     +    G     +          P+
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
            +  W  +  + +     ++A  Y  ++   +P+     I  A  +   G++++A  +Y 
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220
              +LF              ++ G    +   L+    +   D  L  ++ L  +    +
Sbjct: 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL--LNELGVVAFNKS 489

Query: 221 AYEKTLQHIEHA-QIVRFSGKELP--LKLKVKAGICYLRLGNMEKAEILFADLQWKNAI- 276
             +  + H ++A  +V+ +              G  Y +L   + A            + 
Sbjct: 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL-----NQGLL 544

Query: 277 ---DHADLITEVADTLMSLGHSNSALKYYH 303
              + A++ T +A   +       A+ + H
Sbjct: 545 LSTNDANVHTAIALVYLHKKIPGLAITHLH 574

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 77.6 bits (191), Expect = 5e-15
 Identities = 36/335 (10%), Positives = 92/335 (27%), Gaps = 55/335 (16%)

Query: 44  QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA 103
           + ++ +  +        +       +                           + P +  
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340

Query: 104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163
           ++   L    + G+  +        +   P+     + +  +Y+ +    +A   + +  
Sbjct: 341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400

Query: 164 KLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE 223
            + P    A       ++    +    G  ++                  AI    +AY 
Sbjct: 401 TMDPQFGPA-------WIGFAHSFAIEGEHDQ------------------AI----SAYT 431

Query: 224 KTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DHA 279
              +         F G  LP       G+ +++LGN+  A         +++        
Sbjct: 432 TAARL--------FQGTHLPYLFL---GMQHMQLGNILLANEYL-----QSSYALFQYDP 475

Query: 280 DLITEVADTLMSLGHSNSALKYY------HFLETNAGTDNGYLYLKLAECYLSLKERAHA 333
            L+ E+     +     +A+ ++           +        +  L   Y  LK    A
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535

Query: 334 IMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           I    + L    ++ +    +A + L +     AI
Sbjct: 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 55/376 (14%), Positives = 105/376 (27%), Gaps = 60/376 (15%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
               NF++A    KE + +     E ++ L   H    + +      +  +  S +D+A 
Sbjct: 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270

Query: 105 WKQLLTFAV---QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQ 161
            + L    +      D  +       +I    K   L +  A        +        +
Sbjct: 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330

Query: 162 IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA 221
           I ++ P N+D          + G+  +   I  + +  HP  A                 
Sbjct: 331 ILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV---------------T 375

Query: 222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI----D 277
           +                         +  GI YL +  + +A   F       +      
Sbjct: 376 W-------------------------LAVGIYYLCVNKISEARRYF-----SKSSTMDPQ 405

Query: 278 HADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMF 336
                   A +    G  + A+  Y        GT   YL+  L   ++ L     A  +
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF--LGMQHMQLGNILLANEY 463

Query: 337 FYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKI 396
              +   F+ +      L  +   ++  + AI        L  L   +  +   W     
Sbjct: 464 LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQ--NALL-LVKKTQSNEKPW--AAT 518

Query: 397 IMKLCHIYRAKGMPED 412
              L H YR   M + 
Sbjct: 519 WANLGHAYRKLKMYDA 534

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 41/350 (11%), Positives = 94/350 (26%), Gaps = 34/350 (9%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A +    G++ +A  LL +    + +    Y         L + + A +           
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRYL-AAFCLVKLYDWQGALNLLGETNPFRKD 182

Query: 101 ----------------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144
                           ++++            +  +A    ++A+  + K       L S
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242

Query: 145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204
            ++   D E              ++    ++   L L        +   E+YL       
Sbjct: 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE 302

Query: 205 D-LSVIDLLVAILMENNAYEKTLQHIEHA-QIVRFSGKELPLKLKVKAGICYLRLGNMEK 262
               ++      L   + +   L       +I  ++    PL             G   K
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH-----LASLHESGEKNK 357

Query: 263 AEILF---ADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH-FLETNAGTDNGYLYL 318
             ++     D   + A+    +        + +   + A +Y+      +     G  ++
Sbjct: 358 LYLISNDLVDRHPEKAVTWLAV----GIYYLCVNKISEARRYFSKSSTMDP--QFGPAWI 411

Query: 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
             A  +    E   AI  +  A   F+      L L    ++      A 
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 21/242 (8%)

Query: 146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
            +    Y+ AA   E++  +  +  DA           G  AR+  +L +    + S   
Sbjct: 94  ALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT-GDYARAKCLLTKEDLYNRS--- 149

Query: 206 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP------LKLKVKAGICYLR--- 256
            +   L    L++   ++  L  +      R   K           +K++A +CYLR   
Sbjct: 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV 209

Query: 257 ---LGNMEKAEILFAD---LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG 310
              L N ++A+  + +   +  K       L++    T          L Y  + + +A 
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269

Query: 311 TDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITL 370
                  LKL     S ++       +  +++  E + D  L  A  L   ++  + + +
Sbjct: 270 FLRSLYMLKLN--KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327

Query: 371 LS 372
            +
Sbjct: 328 TT 329

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 77.3 bits (190), Expect = 4e-15
 Identities = 56/374 (14%), Positives = 114/374 (30%), Gaps = 45/374 (12%)

Query: 8   GYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL 67
            Y  K + + +K           SP +    G   L+      E+A    ++ +   P  
Sbjct: 115 IYVDKVKHVCEKF---SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171

Query: 68  PETYNTLGLAHSALGN---HKSAFDFYVIAAHLSPKDSALWKQL----LTFAVQKGDTAQ 120
           PE  + L +A   L N    ++A D    A  L+P +  L   L         +  +  +
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231

Query: 121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA-------T 173
               + +A+   P    +    A FY    + +KA E  ++  +  P+N           
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291

Query: 174 KTGAQLFLKCGQTARS------------IGILEEYLKVHPSDADLSVIDLLVAILMENNA 221
           +      +   +                +  L++  + + +     V  +L ++    + 
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR--VCSILASLHALADQ 349

Query: 222 YEKTLQHIEHAQIVRFSGKELPLKLK-VKAGICYLRLGNMEKAEILFADLQWKNAIDHAD 280
           YE+   + +         KE   +L  V   + +LR GN      L+       AI H  
Sbjct: 350 YEEAEYYFQ---------KEFSKELTPVAKQLLHLRYGNF----QLYQMKCEDKAIHHFI 396

Query: 281 LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKA 340
              ++             L+    +  +    +      LA      ++   A     + 
Sbjct: 397 EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456

Query: 341 LDRFEDNIDARLTL 354
           L+       A    
Sbjct: 457 LESGSLIPSASSWN 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 64.2 bits (156), Expect = 5e-11
 Identities = 51/339 (15%), Positives = 102/339 (30%), Gaps = 46/339 (13%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALG--NHKSAFDF 90
           A + Y  G        + +V  +            PE     G      G   ++ A   
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160

Query: 91  YVIAAHLSPKDSALWKQL---LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV 147
           +  A    PK+      L            +  A+  +RQAIR  P +  L++ LA    
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220

Query: 148 EI----GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD 203
           ++     +  +  +  E+  +  P   D  ++ A+ + +  +  ++I +L++ L+  P++
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280

Query: 204 ADLSVIDLLVAILMEN--NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 261
           A           L       Y   +  + + +     GK   L+L   A          +
Sbjct: 281 AY----------LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL------K 324

Query: 262 KAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH---FLETNAGTDNGYLYL 318
           KA+    +         + L    A           A  Y+      E            
Sbjct: 325 KAD----EANDNLFRVCSIL----ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376

Query: 319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357
                   +K    AI  F + +   + + +       L
Sbjct: 377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 50/340 (14%), Positives = 102/340 (30%), Gaps = 67/340 (19%)

Query: 64  SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY 123
                   N L       G +++A +    A  L  ++                      
Sbjct: 47  REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE---------------------- 84

Query: 124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD----------NVDAT 173
               A +AE + +    + A  Y  +G         ++++ +              +D  
Sbjct: 85  ---HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141

Query: 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHA 232
           +   +L     Q  R+    E+ L+  P + +  S + +    L      +  +  +  A
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201

Query: 233 QIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADT 288
             +    + L + L +K            + E L      + A+       D++   A  
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLV-----EEALEKAPGVTDVLRSAAKF 256

Query: 289 LMSLGHSNSALKYYH-FLETNAGTDNGYLYLKLAECYLS-------------------LK 328
                  + A++     LE     +N YL+ ++  CY +                   L+
Sbjct: 257 YRRKDEPDKAIELLKKALEYIP--NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314

Query: 329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
              HA+    KA +  ++       LASL     + EEA 
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 37/279 (13%), Positives = 76/279 (27%), Gaps = 56/279 (20%)

Query: 114 QKGDTAQAMYYIRQAIRAEPKDISLRIH--LASFYVEIGDYEKAAESY----EQIQKLFP 167
            +         +      + ++    +   LA      G  E A E      E IQ+   
Sbjct: 27  GENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA 86

Query: 168 DNVDATKTG-----AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY 222
           D  +          A ++   G+ +     +++   V    +    I+       E    
Sbjct: 87  DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR 146

Query: 223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DH 278
            K                                    E+A++ F     + A+     +
Sbjct: 147 LK------------------------------CGGNQNERAKVCF-----EKALEKKPKN 171

Query: 279 ADLITEVADTLMSLGHSNS---ALKYYHF---LETNAGTDNGYLYLKLAECYLSLKERAH 332
            +  + +A     L +      A+        L  +       L LKL +     +E   
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231

Query: 333 AIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 371
                 +AL++     D   + A     + + ++AI LL
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 24/168 (14%), Positives = 64/168 (38%), Gaps = 3/168 (1%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSA---FDFYVIAAHL 97
           A   +   N+ +AI +  ++     N P  YN   + +  L  +  A    + Y    + 
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA 69

Query: 98  SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157
           +   SA ++      ++KG  + A+   + A+  +   + +   + S++   G++  A +
Sbjct: 70  TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129

Query: 158 SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
             E+  +    +        Q +    +  ++     + L++ P+   
Sbjct: 130 YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 11/136 (8%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           GNF  AI  +++ +R +   P+ +  LG A+     +  A   +V    L P     +  
Sbjct: 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLW 181

Query: 108 L-LTFAVQK--GDTAQAMYYIRQAIRAEPKDISLR--------IHLASFYVEIGDYEKAA 156
                A Q        A  Y  + I       +           ++A +Y    D  KA 
Sbjct: 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241

Query: 157 ESYEQIQKLFPDNVDA 172
            +++ I  L P N  A
Sbjct: 242 AAWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 11/169 (6%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G    AI   +  V       + Y  +G      GN   A  +       +  D  ++ +
Sbjct: 88  GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYE 147

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESYEQIQK 164
           L        +  +A     + +  +P      +  A              A   YE++ +
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 165 LFPDNVDATKTG--------AQLFLKCGQTARSIGILEEYLKVHPSDAD 205
           +        K          A  +       ++    +  L + P++  
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 32/310 (10%), Positives = 65/310 (20%), Gaps = 62/310 (20%)

Query: 68  PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYI-- 125
            +             N+  A + +            ++ +      +      A   I  
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62

Query: 126 -RQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184
               + A     +   +     ++ G    A + Y+         +D        F   G
Sbjct: 63  YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122

Query: 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL 244
               +I  +E+ ++   +D                  +                      
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPK---------------VF---------------------- 145

Query: 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMSLGHSN---S 297
               + G  Y       KA+  F        +    +        A    +         
Sbjct: 146 ---YELGQAYYYNKEYVKADSSF-----VKVLELKPNIYIGYLWRARANAAQDPDTKQGL 197

Query: 298 ALKYY----HFLETNAGTDNGYL---YLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA 350
           A  YY                 L      +A  Y   +++  A   +   L     N  A
Sbjct: 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257

Query: 351 RLTLASLLLE 360
              L   L  
Sbjct: 258 IDGLKMKLEH 267

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 52/236 (22%)

Query: 141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH 200
             A F  +  +Y +A E + +++    ++       A  + +  +   +   +E Y    
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67

Query: 201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNM 260
            +    S              +E                           G   ++ G  
Sbjct: 68  NATKAKS------------ADFEYY-------------------------GKILMKKGQD 90

Query: 261 EKAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYYH-FLETNAGTDNGY 315
             A   +     + A+       D+  ++     + G+   A++Y    +     T +  
Sbjct: 91  SLAIQQY-----QAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPK 143

Query: 316 LYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA---SLLLEEAKEEEAI 368
           ++ +L + Y   KE   A   F K L+   +     L  A   +    + K+  A 
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 68.7 bits (168), Expect = 6e-14
 Identities = 20/134 (14%), Positives = 40/134 (29%)

Query: 46  AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW 105
           A  +   + + LK++  +  ++ +   +        G  + A  F+         +    
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73

Query: 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 165
             L      K    QA      A      D +   H     + +    KA E +E + + 
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 166 FPDNVDATKTGAQL 179
             D     K  + L
Sbjct: 134 SNDEKLKIKAQSYL 147

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 4/113 (3%)

Query: 251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG 310
              +   G +E+AE+ F  L   +   + D I  +A           A   Y       G
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVA-FALG 100

Query: 311 TDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK 363
            ++        +C L LK    A   F   +    D        A   L+  +
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKI--KAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 22/70 (31%)

Query: 37  MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
           ++G A++      F+QA  L      L  N        G     L     A + + +   
Sbjct: 73  IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132

Query: 97  LSPKDSALWK 106
            S  +    K
Sbjct: 133 HSNDEKLKIK 142

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 1/95 (1%)

Query: 277 DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMF 336
           D  D I   A    + G    A  ++ FL       N    + LA  Y   ++   A   
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFL-CIYDFYNVDYIMGLAAIYQIKEQFQQAADL 92

Query: 337 FYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL 371
           +  A    +++           L      +A    
Sbjct: 93  YAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 21/123 (17%), Positives = 37/123 (30%)

Query: 57  LKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG 116
           L  +  LS +  E    LG      G    A   +     L   D+  +  L       G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG 176
              QA+         +  +     H A  ++++GD + A   +   + L           
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 177 AQL 179
           A+ 
Sbjct: 127 ARA 129

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 18/122 (14%), Positives = 35/122 (28%)

Query: 97  LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
           LS         L     Q G    A    +     +  D    + L +    +G YE+A 
Sbjct: 13  LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL 72

Query: 157 ESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL 216
           +SY     +  +        A+  L+ G    +         +  +      +      +
Sbjct: 73  QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132

Query: 217 ME 218
           +E
Sbjct: 133 LE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 24/66 (36%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
           LG  + + + G +EQA+        +  N P         H  LG+   A   +  A  L
Sbjct: 56  LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115

Query: 98  SPKDSA 103
           +    A
Sbjct: 116 AAAQPA 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 6/119 (5%)

Query: 251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF-LETNA 309
           G    + G  + A+ +F  L   +    A     +     SLG    AL+ Y +    + 
Sbjct: 25  GFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 310 GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR--LTLASLLLEEAKEEE 366
             +        AEC+L L +   A   FY A                A  +LE     +
Sbjct: 84  --NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 1/92 (1%)

Query: 277 DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMF 336
           D  + +  +       G  + A K +  L       +   +L L  C  SL     A+  
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQAL-CMLDHYDARYFLGLGACRQSLGLYEQALQS 74

Query: 337 FYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
           +        +        A   L+    + A 
Sbjct: 75  YSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 25/160 (15%), Positives = 59/160 (36%), Gaps = 2/160 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           GN EQA   L++ + + P+  + +  L +        K A + Y  A     +++ +   
Sbjct: 51  GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH--LASFYVEIGDYEKAAESYEQIQKL 165
              F  ++    +A   + +A +        R+   L    +++    +A E +E+  +L
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170

Query: 166 FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
             +        A L  K  +   +    + + +    +A 
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 2/160 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFY--VIAAHLSPKDSALW 105
              + A    ++ +          N  G        ++ A+          L P+ S ++
Sbjct: 85  MEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF 144

Query: 106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL 165
           + L   ++Q    AQA  Y  +++R      S+ + +A    +  +Y  A + Y+   + 
Sbjct: 145 ENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204

Query: 166 FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
              N  +   G +L         +     +  +++P   +
Sbjct: 205 GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 16/234 (6%)

Query: 127 QAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQT 186
           +  +   +     I L   Y++ G+ E+A     +  ++ P + DA    A +F    + 
Sbjct: 28  KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP 87

Query: 187 ARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL 246
             +     + L     +A   V++     L E   YE+  Q +  A   + +      ++
Sbjct: 88  KLADEEYRKALASDSRNAR--VLNNYGGFLYEQKRYEEAYQRLLEA--SQDTLYPERSRV 143

Query: 247 KVKAGICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYY 302
               G+  L++    +A+  F     + ++    +   +  E+AD L        A +YY
Sbjct: 144 FENLGLVSLQMKKPAQAKEYF-----EKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198

Query: 303 -HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA 355
             F +      N    L         ++R  A  +  +    +  +++ +   A
Sbjct: 199 DLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQA 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 31/188 (16%), Positives = 70/188 (37%), Gaps = 5/188 (2%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G+     + LK   +      + Y  LGL +   GN + A      A  + P  +     
Sbjct: 18  GSHMGDQNPLKTD-KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAA 76

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI--QKL 165
           L      + +   A    R+A+ ++ ++  +  +   F  E   YE+A +   +     L
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 166 FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT 225
           +P+     +    + L+  + A++    E+ L+++ +     V   +  +L +   Y   
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS--VALEMADLLYKEREYVPA 194

Query: 226 LQHIEHAQ 233
            Q+ +   
Sbjct: 195 RQYYDLFA 202

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 66.5 bits (162), Expect = 4e-13
 Identities = 18/132 (13%), Positives = 41/132 (31%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G        +  +  +S +  E   +L       G ++ A   +     L   DS  +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
           L       G    A++        +  +     H A   ++ G+  +A       Q+L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 168 DNVDATKTGAQL 179
           +  +  +   ++
Sbjct: 121 NXPEFXELSTRV 132

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 61.5 bits (149), Expect = 2e-11
 Identities = 23/147 (15%), Positives = 47/147 (31%)

Query: 82  GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141
           G   S      +   +S         L     Q G    A    +     +  D    + 
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201
           L +    +G Y+ A  SY     +           A+  L+ G+ A +   L    ++  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 202 SDADLSVIDLLVAILMENNAYEKTLQH 228
           +  +   +   V+ ++E    +K ++H
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEMKH 147

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 19/93 (20%), Positives = 32/93 (34%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A  QY  G +E A  + + +  L       +  LG    A+G +  A   Y   A +   
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP 133
           +           +Q G+ A+A   +  A     
Sbjct: 88  EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 7/155 (4%)

Query: 258 GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLY 317
           G +       A L   ++ D  + +  +A      G    A   +  L       +   +
Sbjct: 1   GPLGSGGGTIAMLNEISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQAL-CVLDHYDSRFF 58

Query: 318 LKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL 377
           L L  C  ++ +   AI  +                 A  LL+  +  EA + L      
Sbjct: 59  LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF----- 113

Query: 378 DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPED 412
            + ++ ++      L+ ++   L  I   K M  +
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209
           G       +   + ++  D ++   + A    + G    +  + +    +   D+     
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR--FF 58

Query: 210 DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF 267
             L A       Y+  +    +  ++       P         C L+ G + +AE   
Sbjct: 59  LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA----AECLLQXGELAEAESGL 112

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 3/160 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
            ++ QA + +++ ++  P     +      +  L  +  A + +  A  + P  + +   
Sbjct: 22  QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81

Query: 108 L-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH--LASFYVEIGDYEKAAESYEQIQK 164
                  +    A++M Y  +A+           +        + G +  A    ++   
Sbjct: 82  YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141

Query: 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204
             P    A K  A+  +  GQ   +    ++Y        
Sbjct: 142 AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 3/145 (2%)

Query: 64  SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY 123
           +  +      L + +    +++ A      A    PK+   W              +A  
Sbjct: 4   ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63

Query: 124 YIRQAIRAEPKDISLRIHLASF-YVEIGDYEKAAESYEQ--IQKLFPDNVDATKTGAQLF 180
             RQA+  +P    +  +   F    +    ++   +++      +P    A        
Sbjct: 64  SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123

Query: 181 LKCGQTARSIGILEEYLKVHPSDAD 205
            K GQ   +   L+  L   P    
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPP 148

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 20/78 (25%), Positives = 37/78 (47%)

Query: 95  AHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK 154
           A  + + S +  QL    ++  D  QA   I  A++++PK+    +  A  Y  +   +K
Sbjct: 1   AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60

Query: 155 AAESYEQIQKLFPDNVDA 172
           A ES+ Q   + PD+ + 
Sbjct: 61  AQESFRQALSIKPDSAEI 78

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 2/87 (2%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G F  A + LK  +   P  P  +  L       G    A  ++           A    
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLL 186

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPK 134
           L     +    AQA Y      + +  
Sbjct: 187 LGWKIAKALGNAQAAY--EYEAQLQAN 211

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 12/174 (6%)

Query: 133 PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI 192
            +  +++  LA  Y+   DY +A  S E   K  P N  A    A+++       ++   
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGI 252
             + L + P  A+++  +    +    N   +++ + + A  +       P    +  GI
Sbjct: 65  FRQALSIKPDSAEINN-NYGWFLCGRLNRPAESMAYFDKA--LADPTYPTPYIANLNKGI 121

Query: 253 CYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYY 302
           C  + G    AE        K ++           E+A T M  G    A  Y+
Sbjct: 122 CSAKQGQFGLAEAYL-----KRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF 170

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 68.2 bits (166), Expect = 1e-12
 Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 16/262 (6%)

Query: 44  QYAYGNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102
            +  G+++Q I+  + V   SP    E    L  A+ A   +    D        S  + 
Sbjct: 9   AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEI---KPSSAPEL 65

Query: 103 ALWKQLLTFAVQKGDTAQAMYYIRQ--AIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
              +    +          +  + +  +   +  + +  +  AS Y    + + A  +  
Sbjct: 66  QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN 220
           Q   L    +       Q+ LK  +   +   L++            +    V++     
Sbjct: 126 QGDSLECMAMT-----VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180

Query: 221 AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD 280
             +      +           L          C++  G  E AE +  +   K++  H +
Sbjct: 181 KLQDAYYIFQEMADKCSPTLLLLNGQ----AACHMAQGRWEAAEGVLQEALDKDS-GHPE 235

Query: 281 LITEVADTLMSLGHSNSALKYY 302
            +  +      LG        Y
Sbjct: 236 TLINLVVLSQHLGKPPEVTNRY 257

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 62.5 bits (151), Expect = 1e-10
 Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 14/236 (5%)

Query: 134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193
           +D+   + L   Y+    Y    +   +I+      + A +  A+      +    +  L
Sbjct: 32  RDVERDVFLYRAYLAQRKYGVVLD---EIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88

Query: 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253
           +  +       + + + +  +I   +   +  L+ +              L+        
Sbjct: 89  DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD---------SLECMAMTVQI 139

Query: 254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE-TNAGTD 312
            L+L  ++ A      +Q     D        A   ++ G       YY F E  +  + 
Sbjct: 140 LLKLDRLDLARKELKKMQ-DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP 198

Query: 313 NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAI 368
              L    A C+++      A     +ALD+   + +  + L  L     K  E  
Sbjct: 199 TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 25/195 (12%), Positives = 66/195 (33%), Gaps = 6/195 (3%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A    ++   +  ++ L   +  S ++  T   L  A     +         +    S +
Sbjct: 72  AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD--YEKAAES 158
             A+  Q+L   ++      A   +++    +      ++  A   +  G    + A   
Sbjct: 132 CMAMTVQIL---LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI 188

Query: 159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME 218
           ++++       +      A   +  G+   + G+L+E L       +  +I+L+V     
Sbjct: 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET-LINLVVLSQHL 247

Query: 219 NNAYEKTLQHIEHAQ 233
               E T +++   +
Sbjct: 248 GKPPEVTNRYLSQLK 262

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.0 bits (129), Expect = 5e-08
 Identities = 22/170 (12%), Positives = 43/170 (25%), Gaps = 8/170 (4%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
           L  AS+ +   N + A+  L +   L                 L     A          
Sbjct: 105 LMAASIYFYDQNPDAALRTLHQGDSLECMA-----MTVQILLKLDRLDLARKELKKMQDQ 159

Query: 98  SPKDSALW--KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
               +        ++ A        A Y  ++        + L    A+ ++  G +E A
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA 219

Query: 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG-ILEEYLKVHPSDA 204
               ++       + +       L    G+        L +    H S  
Sbjct: 220 EGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 12/131 (9%)

Query: 37  MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
                SL       + A  + +E+           N     H A G  ++A      A  
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228

Query: 97  LSPKDSALWKQLLTFAVQKGDTAQAMY-YIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
                      L+  +   G   +    Y+ Q   A              +  I +Y   
Sbjct: 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-----------HPFIKEYRAK 277

Query: 156 AESYEQIQKLF 166
              ++++   +
Sbjct: 278 ENDFDRLVLQY 288

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 2/126 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
             + +  +LL   + ++PN  + + +LG+ ++   N+ SA      A  L P D+ LW +
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211

Query: 108 L-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
           L  T A       +A+    +A+   P  + +  ++A  Y  +  Y+ AA+   +   + 
Sbjct: 212 LGATLANG-NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270

Query: 167 PDNVDA 172
                 
Sbjct: 271 VGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 29/151 (19%), Positives = 44/151 (29%), Gaps = 17/151 (11%)

Query: 37  MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
            LG    Q        AI  L     L P     +  L ++H+   N  +A         
Sbjct: 60  SLGLT--QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 117

Query: 97  LSPKDSALWKQLLTFAVQKGDTA---------------QAMYYIRQAIRAEPKDISLRIH 141
             P+   L    L   V   D                 +    +  A+   P D  L   
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHAS 177

Query: 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172
           L   Y    +Y+ AA +  +  +L PD+   
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 46/329 (13%), Positives = 85/329 (25%), Gaps = 51/329 (15%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G+  Q  +             E     GL+   L N   A   +      +P+    W+ 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
           L     +      A+  +  A   +PKDI++   LA  +    +   A  S        P
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 168 DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ 227
                     Q  +                                      N Y +   
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQS---------------------EDFFFAAPNEYRECRT 159

Query: 228 HIEHAQIVRFSGKELPLKLK---VKA----GICYLRLGNMEKAEILFADLQWKNAI---- 276
            +  A           L++     +     G+ Y    N + A         + A+    
Sbjct: 160 LLHAA-----------LEMNPNDAQLHASLGVLYNLSNNYDSAAANL-----RRAVELRP 203

Query: 277 DHADLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLAECYLSLKERAHAIM 335
           D A L  ++  TL +      AL  Y+  L+ N       +   +A  Y ++ +   A  
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRVMYNMAVSYSNMSQYDLAAK 261

Query: 336 FFYKALDRFEDNIDARLTLASLLLEEAKE 364
              +A+             +        +
Sbjct: 262 QLVRAIYMQVGGTTPTGEASREATRSMWD 290

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 38/314 (12%), Positives = 79/314 (25%), Gaps = 42/314 (13%)

Query: 82  GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141
           G+       Y   A+          +     ++  + A+A        +A P+       
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP 201
           L     E      A  +    + L P ++      A           ++  L  +L   P
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 202 SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME 261
                                   LQ       +    +             +       
Sbjct: 121 QYEQ---------------LGSVNLQADVDIDDLNVQSE----------DFFFAAPNEYR 155

Query: 262 KAEILFADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYY-HFLETNAGTDNGYL 316
           +   L        A+    + A L   +        + +SA       +E     D+  L
Sbjct: 156 ECRTLL-----HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP--DDAQL 208

Query: 317 YLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376
           + KL     +      A+  + +ALD     +     +A      ++ + A   L     
Sbjct: 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL----- 263

Query: 377 LDSLDMNSDKSNPW 390
           + ++ M    + P 
Sbjct: 264 VRAIYMQVGGTTPT 277

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 2/129 (1%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
             +G++E+A     + +  +      Y       S++   + A  FY  A  L    +  
Sbjct: 34  SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93

Query: 105 WKQL-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ 163
           +      +   K    +A     +A+RA  ++  L   L +  V++   + A    ++  
Sbjct: 94  YYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152

Query: 164 KLFPDNVDA 172
           +L  ++ +A
Sbjct: 153 ELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 2/126 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
             +++A  + ++ +R      + +  LG     L   K A  +   A  L+  D+    Q
Sbjct: 105 EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ 164

Query: 108 L-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
             +  A  +G   +A+         +P       +    Y    + EKA E  ++   + 
Sbjct: 165 FGMCLA-NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223

Query: 167 PDNVDA 172
           PD++ A
Sbjct: 224 PDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 15/130 (11%), Positives = 48/130 (36%), Gaps = 3/130 (2%)

Query: 43  LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102
           +  ++ +   +  L+     ++              S  G+++ A + +  A   + +D+
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMT---GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA 57

Query: 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162
             +           +  +A+ +  +A+  +    +      + YV    Y++A + +E+ 
Sbjct: 58  IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117

Query: 163 QKLFPDNVDA 172
            +   +N D 
Sbjct: 118 LRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 2/106 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
              + A+  L+  V L+ N  E     G+  +  G    A   +       P  +  +  
Sbjct: 139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYN 198

Query: 108 L-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY 152
             +T+A  K +  +A+  + +AI  +P  +               +
Sbjct: 199 AGVTYA-YKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 64.0 bits (157), Expect = 6e-12
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G + QA+ LL++V        +    LG+A+   G      +    +   +P +  +   
Sbjct: 22  GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 108 L-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
           L LT+  Q      A+  + +   A P + ++R  L      +G +++A +S++    L 
Sbjct: 82  LGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140

Query: 167 PDNVDA 172
           P+    
Sbjct: 141 PNEGKV 146

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G  ++   LL+  +  +P+  +    LGL +  +  +  A    +  A  +P +  +  +
Sbjct: 56  GAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR 115

Query: 108 L-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
           L +      G   +A+   + A+   P +  +   +A  Y ++G +E+A   +++  +L 
Sbjct: 116 LGVALD-NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174

Query: 167 PDNVDA 172
                 
Sbjct: 175 EGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 17/108 (15%), Positives = 38/108 (35%)

Query: 65  PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124
                 Y   G++H+  G +  A             D  +   L    V+ G   +    
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64

Query: 125 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172
           + +++   P ++ +   L   YV++  Y+ A     ++ +  P N + 
Sbjct: 65  LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 65.3 bits (160), Expect = 6e-12
 Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 1/125 (0%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G +E AIS L + V     +   Y  +  + + +GN                K     + 
Sbjct: 52  GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                 +  +  + +          P+           Y    D+  A ++Y ++ K  P
Sbjct: 112 ADILT-KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170

Query: 168 DNVDA 172
           ++   
Sbjct: 171 EDARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 2/140 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
            N E+ +   +    ++P   E     G  +    +  +A   Y      +P+D+  +  
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                 +     +A+    +AI  +P  +   I  A+  + + +Y  A E+ +  +    
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

Query: 168 DNVDAT--KTGAQLFLKCGQ 185
           +  + +  +   QL+ K  Q
Sbjct: 239 EVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 62.2 bits (152), Expect = 7e-11
 Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 2/162 (1%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
           Y    F++AI    +   L  +     N    A    G +++A      A     +  A 
Sbjct: 16  YKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD 74

Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164
           +K +     + G+    +  +++ I    K ++     A    ++ + EK  +  E    
Sbjct: 75  YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-HRTADILTKLRNAEKELKKAEAEAY 133

Query: 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 206
           + P+  +  +   + +        ++    E +K  P DA  
Sbjct: 134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 18/141 (12%), Positives = 47/141 (33%), Gaps = 2/141 (1%)

Query: 65  PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124
            ++ +     G           A + Y  A  L    + L  +      +KG+   A+  
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEY-EKGEYETAIST 60

Query: 125 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184
           +  A+    +  +    ++  +  IG+        ++  + +  ++   +T   +  K  
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-ILTKLR 119

Query: 185 QTARSIGILEEYLKVHPSDAD 205
              + +   E    V+P  A+
Sbjct: 120 NAEKELKKAEAEAYVNPEKAE 140

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 95/672 (14%), Positives = 195/672 (29%), Gaps = 199/672 (29%)

Query: 85  KSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144
              FD   +          L K+ +   +   D       +   + ++ +++     +  
Sbjct: 30  VDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM-----VQK 81

Query: 145 FYVEI--GDYEKAAESY--EQIQ-----KLFPDNVDATKTGAQLFLKCGQTARSIGILEE 195
           F  E+   +Y+        EQ Q     +++ +  D      Q+F K      ++  L+ 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-----YNVSRLQP 136

Query: 196 YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRF-----SGK---------E 241
           YLK+                        + L  +  A+ V       SGK          
Sbjct: 137 YLKLR-----------------------QALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 242 LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 301
             ++ K+   I +L L N    E +   LQ         L+ ++     S    +S +K 
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--------KLLYQIDPNWTSRSDHSSNIK- 224

Query: 302 YHFLETNAGTD--NGYLYLK-LAECYLSLKERAHAIMFFYKALD---------RFEDNID 349
              L  ++        L  K    C L L    +A  +   A +         RF+   D
Sbjct: 225 ---LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLTTRFKQVTD 279

Query: 350 ARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGM 409
               L++        +     L+P +    L          +L+ +           + +
Sbjct: 280 F---LSAATTTHISLDHHSMTLTPDEVKSLL------LK--YLDCRP----------QDL 318

Query: 410 PEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAP 469
           P + V    P    S+  E++R  +                 + ++  D +   I     
Sbjct: 319 PRE-VLTTNPRRL-SIIAESIRDGLA------------TWDNWKHVNCDKLTTIIE---- 360

Query: 470 KS-ELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQ--QEAFREPPLPNL 526
            S  +L  A  RK   +                + W      D      +  +     +L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----SL 416

Query: 527 LK--NEENQCLIIDL-------CKALASL-----QRYE-----EASEIINLSMR------ 561
           ++   +E+   I  +        +   +L       Y      ++ ++I   +       
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 562 LAY---NILPLEKKEELRS-------LGAKMAYDSTDPNHGFDCA----------KYILQ 601
           + +   NI   E+    R        L  K+ +DST  N                 YI  
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 602 LHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHH 661
             P        Y ++++ +     K  ++      + +KY D +        +  +    
Sbjct: 537 NDPK-------YERLVNAILDFLPKIEENL-----ICSKYTDLL--------RIALM--- 573

Query: 662 QDAARCYLEAYK 673
            +    + EA+K
Sbjct: 574 AEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 2e-09
 Identities = 67/457 (14%), Positives = 138/457 (30%), Gaps = 138/457 (30%)

Query: 301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD--RFEDNIDARLTLASL- 357
           ++H ++   G ++ Y Y  +   +            F    D    +D   + L+   + 
Sbjct: 3   HHHHMDFETG-EHQYQYKDILSVFEDA---------FVDNFDCKDVQDMPKSILSKEEID 52

Query: 358 -LLEEAKEEEAI-----TLLSPPKDL------DSLDMNSDKSNPWWLNEKIIMKLCHIYR 405
            ++              TLLS  +++      + L +N       +L   I  +     R
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTE----QR 103

Query: 406 AKGMPED-FVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSIL--- 461
              M    +++    L  +    +    K  V R   +  L+ R  +    P  ++L   
Sbjct: 104 QPSMMTRMYIEQRDRLYND---NQVFA-KYNVSRL--QPYLKLRQALLELRPAKNVLIDG 157

Query: 462 ---CGIRPAAPKSELLVAARARKKIQKK----------------EALKEEKKALAKAAGV 502
               G      K+ + +      K+Q K                E + E  + L      
Sbjct: 158 VLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------ 205

Query: 503 EWHSDDTDDESQQEAFREPPLP---------NLLKNEE-NQCLII-------------DL 539
             +  D +  S+ +      L           LLK++    CL++             +L
Sbjct: 206 -LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 540 -CKALASLQRYEEASEIINLSMRLAYNILPLEK---KEELRSLGAKMAYDSTDPNHGFDC 595
            CK L    R+++ ++ ++ +     ++         +E++SL  K  Y    P    D 
Sbjct: 265 SCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRP---QDL 318

Query: 596 AKYILQLHPYSLSAWNCYYKVLSRMGKI------NSKHSKHSKFIRYLRAKYKDCVPPII 649
            + +L  +P  LS       +++   +       N KH    K    + +      P   
Sbjct: 319 PREVLTTNPRRLS-------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 650 ISGHQFTMASHHQDAARCYLEAYKLLPENPLINLKRL 686
                           R   +   + P +  I    L
Sbjct: 372 ----------------RKMFDRLSVFPPSAHIPTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 89/623 (14%), Positives = 180/623 (28%), Gaps = 200/623 (32%)

Query: 27  KNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALG 82
            +K    V K + E  L+  Y         L   ++     P      Y         L 
Sbjct: 72  LSKQEEMVQKFVEEV-LRINYK-------FLMSPIKTEQRQPSMMTRMYIE---QRDRLY 120

Query: 83  NHKSAFDFYVIAAHLS--PKDSALWKQLLTFAVQKGDTAQAM------YYIRQAIRAEPK 134
           N    F  Y    ++S       L + LL     K      +      +       +   
Sbjct: 121 NDNQVFAKY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-- 174

Query: 135 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE 194
            +  ++    F++ + +        E +QKL               +    T+RS     
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL------------YQIDPNWTSRSDHSSN 222

Query: 195 EYLKVHPSDADLSVIDLLVAILMENNAYEKTL---QHIEHAQIVR-FSG----------K 240
             L++H   A+L         L+++  YE  L    ++++A+    F+           K
Sbjct: 223 IKLRIHSIQAELR-------RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 241 ELPLKLKVKAGICYLRLGNM------EKAEILFADLQWKNAIDHADLITEVADT---LMS 291
           ++   L       ++ L +       ++ + L    ++ +     DL  EV  T    +S
Sbjct: 276 QVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLL--KYLD-CRPQDLPREVLTTNPRRLS 331

Query: 292 L-GHSNSALKYYHFLETNAGTDNGYLYL---KLAE----CYLSLKE---RAHAIMFFYKA 340
           +   S         +     T + + ++   KL          L+    R       +  
Sbjct: 332 IIAES---------IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDR 377

Query: 341 LDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEK----- 395
           L  F  +                    I    P   L  +          W +       
Sbjct: 378 LSVFPPSAH------------------I----PTILLSLI----------WFDVIKSDVM 405

Query: 396 IIMKLCHIYR-AKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQ----RTK 450
           +++   H Y   +  P++   +I  +  E      L+ K++ +  L + I+      +T 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLE------LKVKLENEYALHRSIVDHYNIPKTF 459

Query: 451 IYNNLPTDSI-----------LCGIRPAAPKSELLVAARARKK------IQKKEALKEEK 493
             ++L    +           L  I      +        R        +++K  ++ + 
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF------RMVFLDFRFLEQK--IRHDS 511

Query: 494 KALAKAAGVEWHSDD-----------TDDESQQEAFREPPLPNLLKNEENQCLIIDLCKA 542
            A   +  +    +             D++ + E      L  L K EEN  LI      
Sbjct: 512 TAWNASGSI---LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN--LICSKYTD 566

Query: 543 LASLQR---------YEEASEII 556
           L  L+          +EEA + +
Sbjct: 567 L--LRIALMAEDEAIFEEAHKQV 587

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 56/365 (15%), Positives = 117/365 (32%), Gaps = 44/365 (12%)

Query: 50  FEQAISLLKEVVRLSPNLPETYNTLG----LAHSALGNHKSAFDF----YVIAAHLSPKD 101
           FE+A + ++        +   +  +     ++ +    ++         Y        KD
Sbjct: 5   FERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKD 64

Query: 102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQ 161
                +     +++GD    + ++  AI  +P D      L     E  + + A  + ++
Sbjct: 65  WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

Query: 162 IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMEN 219
             +L P+N+ A    A  +        +   L+ ++K +P    L  +           +
Sbjct: 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184

Query: 220 NAYEKTLQHIE----HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275
            +   +         + +    +G  +   L+   G+ +   G   +A   F       A
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF-----NAA 239

Query: 276 I----DHADLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLAECYLSLKER 330
           +    +   L   +  TL +   S  A++ Y   LE             L    ++L   
Sbjct: 240 LTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GFIRSRYNLGISCINLGAY 297

Query: 331 AHAIMFFYKAL--------------DRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKD 376
             A+  F  AL                   NI A L +A  L+++ +  +A        D
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN----LGD 353

Query: 377 LDSLD 381
           LD L 
Sbjct: 354 LDVLL 358

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 14/148 (9%)

Query: 37  MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
            LG    Q    N + AI  L+  + L PN  +    L ++++   + + A +       
Sbjct: 104 FLGIT--QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161

Query: 97  LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP------------KDISLRIHLAS 144
            +PK   L K            +++          +              D  L+  L  
Sbjct: 162 QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221

Query: 145 FYVEIGDYEKAAESYEQIQKLFPDNVDA 172
            +   G++ +A +++     + P++   
Sbjct: 222 LFHLSGEFNRAIDAFNAALTVRPEDYSL 249

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 10/135 (7%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G+    I  ++  +   P   E +  LG+  +   N ++A         L P +      
Sbjct: 79  GDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA 138

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKD----------ISLRIHLASFYVEIGDYEKAAE 157
           L            A   ++  I+  PK             L   ++   V+    E   E
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 158 SYEQIQKLFPDNVDA 172
            Y +      D +D 
Sbjct: 199 LYLEAAHQNGDMIDP 213

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 34/125 (27%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G F +AI      + + P     +N LG   +     + A + Y                
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAY---------------- 270

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                              +A+  +P  I  R +L    + +G Y +A  ++     L  
Sbjct: 271 ------------------TRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312

Query: 168 DNVDA 172
            + + 
Sbjct: 313 KSRNQ 317

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 49/351 (13%), Positives = 107/351 (30%), Gaps = 53/351 (15%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
           LG  S      + +              ++       G      G+ ++   F+  A   
Sbjct: 19  LGLGSGGGGTNSHDGNSQQGSGS-DGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQA 77

Query: 98  SPKD----SALWKQLLTFAVQKGDTAQAMYY------IRQAIRAEPKDISLRIHLASFYV 147
             +D    SA++ QL       GD  +AM Y      + +++     +     +L +   
Sbjct: 78  GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137

Query: 148 EIGDYEKAAESYEQ---IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA 204
            +G +++AA   E+   + +   D +   +    L    G    + G   ++L       
Sbjct: 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL----GNVYHAKG---KHLG------ 184

Query: 205 DLSVIDLLVAILMENNAYEKTLQHIEHA-QIVRFSGKELPLKLKVKA------GICYLRL 257
                +          A  + ++  +   +++R  G                 G  Y  L
Sbjct: 185 ---QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ-----GRACGNLGNTYYLL 236

Query: 258 GNMEKAEILFA-----DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH-----FLET 307
           G+ + A            ++ +        + + ++ + LG    A ++Y       +E 
Sbjct: 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296

Query: 308 NAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLL 358
                       L   Y  L E   AI +  + L   ++ +  R+  A   
Sbjct: 297 GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-LGDRIGEARAC 346

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLS------PNLPETYNTLGLAHSALGNHKSAFDFYVIA 94
            +  Y  G+F+ AI   +E +R++             + LG +H  LG  + A + Y   
Sbjct: 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289

Query: 95  AHLSPKDSALWKQLLTF------AVQKGDTAQAMYY------IRQAIRAEPKDISLRIHL 142
             L+ +      +  +            +   A+ Y      I Q +     +      L
Sbjct: 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL 349

Query: 143 ASFYVEIGDYEKAAESYEQ 161
            + +  IG +E+A +  EQ
Sbjct: 350 GNAHSAIGGHERALKYAEQ 368

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 12/136 (8%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------ 101
           G ++ A++L +  ++ +P  PE    L      LG    A +        +P+       
Sbjct: 19  GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78

Query: 102 -----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA 156
                 AL++Q       KG   QA+  ++ A R  P+   L +     Y  +G+ +KA 
Sbjct: 79  LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138

Query: 157 ESYEQIQKLFPDNVDA 172
            S +Q   L  D  + 
Sbjct: 139 ASLKQALAL-EDTPEI 153

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G  EQA+S+LK+  R++P     +   GL ++ LG    A      A  L          
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQ 161
              +    G   +A+    +A+   PKD+ LR+  AS  +  G  E+AA +   
Sbjct: 158 AELYL-SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 14/137 (10%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKS-----------AFDFYVIAAH 96
           G    A+   K +V  +P     Y  L  A+ AL                A      A  
Sbjct: 53  GLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112

Query: 97  LSPKDSALWKQL-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
           ++P+ + L  Q  L +A   G+  +A   ++QA+  E     +R  LA  Y+ +G  ++A
Sbjct: 113 VNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEA 170

Query: 156 AESYEQIQKLFPDNVDA 172
              Y +  +  P ++D 
Sbjct: 171 LAQYAKALEQAPKDLDL 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 65  PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-LTFAVQKGDTAQAMY 123
               +    LG+   ALG + +A   +  A   +P+D      L  T   + G    A+ 
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALE 60

Query: 124 YIRQAIRAEPKD-----------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172
             +  +   P+            ++L           G  E+A    +  +++ P     
Sbjct: 61  NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 19/87 (21%), Positives = 34/87 (39%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
            N  +A    + V +  P   E + +LGL  +       A      A  L PKD A+   
Sbjct: 31  ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPK 134
           L      + +   A+  +R  + ++P+
Sbjct: 91  LAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 14/93 (15%), Positives = 26/93 (27%)

Query: 114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173
           +  + A+A        + EP+       L     E      A  +    + L P ++   
Sbjct: 29  KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88

Query: 174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADL 206
              A           ++  L  +L   P    L
Sbjct: 89  AALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 37  MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH 96
            LG    Q        AI  L     L P     +  L ++H+   N  +A         
Sbjct: 56  SLGLT--QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113

Query: 97  LSPKDSAL 104
             P+   L
Sbjct: 114 SQPQYEQL 121

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 40  EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDF--------- 90
           +  L     +  +A  LL E+V+ SP          L    + + +   D          
Sbjct: 205 DYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD-IVRHSQHPLDEKQLAALNTE 263

Query: 91  --YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE 148
              ++        S +++     A+ KG T ++   I   I  E   ++  + L   Y  
Sbjct: 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNY-VLLGKVYEM 322

Query: 149 IGDYEKAAESYEQIQKLFPDN 169
            G   +AA++Y     L P  
Sbjct: 323 KGMNREAADAYLTAFNLRPGA 343

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 7/125 (5%)

Query: 36  KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA 95
             L E  L       +  ++L         NL   Y    ++    G    ++       
Sbjct: 250 HPLDEKQLAALNTEIDNIVTLP-----ELNNLSIIYQIKAVSALVKGKTDESYQAINTGI 304

Query: 96  HLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR-IHLASFYVEIGDYEK 154
            L       +  L      KG   +A      A    P   +L  I    F   +     
Sbjct: 305 DLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVP 363

Query: 155 AAESY 159
             + +
Sbjct: 364 YLDKF 368

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 16/84 (19%), Positives = 26/84 (30%)

Query: 51  EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT 110
           +     L+ ++    +      TLG  ++      +A      A    P  S  WK L  
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 111 FAVQKGDTAQAMYYIRQAIRAEPK 134
               +GD A A       + A   
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 15/87 (17%), Positives = 23/87 (26%)

Query: 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179
                +   +     ++ LR  L   Y E   ++ A           P    A K   + 
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 180 FLKCGQTARSIGILEEYLKVHPSDADL 206
               G  A +    E  L    S  D 
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 2/82 (2%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK--DSALW 105
             F+ A+  L+  +   P     +  LG      G+   A   +      +    D  + 
Sbjct: 33  EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVV 92

Query: 106 KQLLTFAVQKGDTAQAMYYIRQ 127
           K+L  F  +        ++   
Sbjct: 93  KELQVFLRRLAREDALEHHHHH 114

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 49/329 (14%), Positives = 93/329 (28%), Gaps = 74/329 (22%)

Query: 40  EASLQYAYGNFEQAISLLKEVVRLS----PNLPETYNTLGLAHSALGNHKSAFDFYVIAA 95
           E       G+    +S  +  V++       L   Y+ LG A+  L ++  A +++    
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH---- 66

Query: 96  HLSPKDSALWKQLLTFAVQKGD-TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK 154
                        LT A   GD   +A                   +L +    +G++++
Sbjct: 67  ----------HHDLTLARTIGDQLGEAKAS---------------GNLGNTLKVLGNFDE 101

Query: 155 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVA 214
           A    ++   +  +  D       L         ++G +  Y     S       D    
Sbjct: 102 AIVCCQRHLDISRELNDKVGEARAL--------YNLGNV--YHAKGKSFGCPGPQDTGEF 151

Query: 215 ILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA-----------GICYLRLGNMEKA 263
                NA +  +   E           L L   +             G  +  LGN   A
Sbjct: 152 PEDVRNALQAAVDLYEEN---------LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202

Query: 264 EILFA-----DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH-----FLETNAGTDN 313
            I          ++ +        + + +  + LG   +A +YY        +       
Sbjct: 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262

Query: 314 GYLYLKLAECYLSLKERAHAIMFFYKALD 342
                 L   Y  L++   AI +  K L 
Sbjct: 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 48  GNFEQAISLLKEVVRLS------PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--- 98
           GNF  A+   ++ + ++            Y+ LG A+  LG  ++A ++Y     L+   
Sbjct: 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 256

Query: 99  ---PKDSALWKQLLTFAVQKGDTAQAMYY------IRQAIRAEPKDISLRIHLASFYVEI 149
                ++     L        D  +A+ Y      I Q ++    +      L + Y  +
Sbjct: 257 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316

Query: 150 GDYEKAAESYEQ 161
           G++++A    E+
Sbjct: 317 GNHDQAMHFAEK 328

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 23/161 (14%)

Query: 18  KKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLA 77
             +G+  G       G        +LQ A   +E+ +SL+  +          +  LG  
Sbjct: 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL-GDRAAQGRAFGNLGNT 192

Query: 78  HSALGNHKSAFDFY----VIAAHLS--PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA 131
           H  LGN + A   +    +IA        +   +  L    +  G+   A  Y ++ +  
Sbjct: 193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL-- 250

Query: 132 EPKDISLRIH-----------LASFYVEIGDYEKAAESYEQ 161
               ++ ++            L + Y  + DYEKA + + +
Sbjct: 251 ---LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 53.2 bits (129), Expect = 1e-08
 Identities = 33/123 (26%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G++++AI   ++ + L P   E +  LG A+   G++  A ++Y  A  L P+ +  W  
Sbjct: 15  GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74

Query: 108 L-LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
           L   +  ++GD  +A+ Y ++A+  +P+      +L + Y + GDY++A E Y++  +L 
Sbjct: 75  LGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133

Query: 167 PDN 169
           P +
Sbjct: 134 PRS 136

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 19/141 (13%)

Query: 51  EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW----- 105
            +A  LL + V+L P L E +N LG  +   G+  SA   +  A        +L      
Sbjct: 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179

Query: 106 ---KQLLTFAVQKGDTAQAMYYIRQAIRAEPKD--------ISLRIHLASFYVEIGDYEK 154
               Q  +          ++   + A++ +  D         +      +        ++
Sbjct: 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239

Query: 155 AAESYEQ---IQKLFPDNVDA 172
           A  +Y Q   + +    N D 
Sbjct: 240 ALSAYAQAEKVDRKASSNPDL 260

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 24/161 (14%), Positives = 50/161 (31%), Gaps = 10/161 (6%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH-KSAFDFYVIAAHLSPKDSALWK 106
              E+ +  ++EV+  +    +     G A +   ++   A      A  L P+    W 
Sbjct: 82  EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141

Query: 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR--------IHLASFYVEIGDYEKAAES 158
           QL     +KGD   A      A+      +SL+        +   S          +   
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 159 YEQIQKLFPDNVDA-TKTGAQLFLKCGQTARSIGILEEYLK 198
            +   ++   +  +    G         T ++  I ++ L 
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 29/215 (13%), Positives = 54/215 (25%), Gaps = 24/215 (11%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKS---------AFDFYVIAAHLS 98
           G+   A +     +    N   +   L +    L              +     +A  + 
Sbjct: 151 GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209

Query: 99  PKDS--------ALWKQLLTFAVQKGDTAQAMYYIRQAIRA---EPKDISLRIHLASFYV 147
             D         A              + QA+    QA +       +  L ++ A+ + 
Sbjct: 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269

Query: 148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS 207
               Y +A E + Q   L P   +  +   QL     +    +   E   K  P      
Sbjct: 270 YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL---ESKGKTKPKKLQSM 326

Query: 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL 242
           +  L  A L             +   +       L
Sbjct: 327 LGSLRPAHLGPCGDGRYQSASGQKMTLELKPLSTL 361

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 4/125 (3%)

Query: 43  LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102
            Q A   + QA  + ++    + + P+ +      H    ++  A + +  AA L P   
Sbjct: 237 SQQALSAYAQAEKVDRK----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292

Query: 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162
              ++              +    +    + + +   +  A          ++A   +  
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMT 352

Query: 163 QKLFP 167
            +L P
Sbjct: 353 LELKP 357

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164
           WK  L     +G   QA+  + +AI+A PKD SLR          GD+E+A E   Q  K
Sbjct: 4   WKNAL----SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59

Query: 165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVA-ILMENNAYE 223
           LFP+ +        L       AR              + +     L+   + M +  YE
Sbjct: 60  LFPEYLPGASQLRHLVK--AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYE 117

Query: 224 KTLQHIEHA 232
           +  +     
Sbjct: 118 QVSELALQI 126

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 21/232 (9%)

Query: 43  LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102
            +      EQ +              +     G+ + +LG    A + +  A  + P   
Sbjct: 21  QEVILARMEQIL---ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP 77

Query: 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162
            ++  L  +  Q G+   A       +  +P      ++        G  + A +     
Sbjct: 78  EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137

Query: 163 QKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY 222
            +  P++   +        K  +      + + + K        ++++  +  + E    
Sbjct: 138 YQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM 197

Query: 223 EKTLQHIEHAQIVRFSGKELPLKLK---VKA----GICYLRLGNMEKAEILF 267
           E+                     L     +     G  YL LG+++ A  LF
Sbjct: 198 ERLKADATDN-----------TSLAEHLSETNFYLGKYYLSLGDLDSATALF 238

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 3/122 (2%)

Query: 43  LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSAL---GNHKSAFDFYVIAAHLSP 99
           L     + +QA  +LK+    S      +N +      +      +           L+ 
Sbjct: 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 212

Query: 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESY 159
             S     L  + +  GD   A    + A+     +     +       +G  +      
Sbjct: 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272

Query: 160 EQ 161
           +Q
Sbjct: 273 DQ 274

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 4/137 (2%)

Query: 40  EASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAA 95
             +  +     +   +   +  +     P          GL     G+  +A   +  A 
Sbjct: 32  AEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV 91

Query: 96  HLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
              PK    W+ L T   +      A+  +R+ +  +P + +  + LA  +       +A
Sbjct: 92  QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151

Query: 156 AESYEQIQKLFPDNVDA 172
            E      +  P     
Sbjct: 152 CEILRDWLRYTPAYAHL 168

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)

Query: 50  FEQAISLLKEVV----RLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSP----K 100
           FE+A S ++  V    +L   L E       AH  L          Y            +
Sbjct: 3   FERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLR 62

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
           D     +     +Q+GD   A+     A++ +PK +    +L +   E      A  +  
Sbjct: 63  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-------------LS 207
           +  +L PDN  A    A  F       ++  IL ++L+  P+ A              L 
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182

Query: 208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF 267
               ++  L+ ++ + +  +    A  VR     +   ++   G+ +   G  +KA   F
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAA--VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240

Query: 268 ADLQWKNAI----DHADLITEVADTLMSLGHSNSALKYYHF-LETNAGTDNGYLYLKLAE 322
                  A+    +   L  ++  TL +   S  A+  Y   LE             L  
Sbjct: 241 -----TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP--GYIRSRYNLGI 293

Query: 323 CYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE 360
             ++L     A+  F +AL+    +   R    ++   
Sbjct: 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 16/149 (10%), Positives = 45/149 (30%), Gaps = 19/149 (12%)

Query: 40  EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP 99
           E  L     +++ A+        +          +G  ++ L N   A   +  + +   
Sbjct: 12  EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISL----------------RIHLA 143
             +  + Q      Q      A+  +++A+     +  +                  ++A
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 128

Query: 144 SFYVEIGDYEKAAESYEQIQKLFPDNVDA 172
             Y +  +++KA E       +  +   +
Sbjct: 129 FMYAKKEEWKKAEEQLALATSMKSEPRHS 157

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 23/125 (18%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIA-AHLSPKDSALWK 106
            N  +A       +    +L   Y   G+ +     +  A      A   L       +K
Sbjct: 51  KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110

Query: 107 QL----------------LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150
            L                  +A +K +  +A   +  A   + +    +I  A     + 
Sbjct: 111 ILGLQFKLFACEVLYNIAFMYA-KKEEWKKAEEQLALATSMKSEPRHSKIDKA-----ME 164

Query: 151 DYEKA 155
              K 
Sbjct: 165 CVWKQ 169

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 19/169 (11%), Positives = 55/169 (32%), Gaps = 13/169 (7%)

Query: 71  YNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIR 130
               G+  +   + K A D +   + +    S +   +        +  +A     ++I 
Sbjct: 9   LWNEGVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65

Query: 131 AEPKDISLRIHLASFYVEIGDYEKAAESYEQ-IQKLFPDNVDA-TKTGAQLFLKCGQTAR 188
            +             Y +   Y+ A +  ++ + +L  + +      G Q  L   +   
Sbjct: 66  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 125

Query: 189 SIGILEEYLKVHPSDADLSVIDLLVAILM----ENNAYEKTLQHIEHAQ 233
           +I  +    +    +   +   L +A  M     ++  +K ++ +   +
Sbjct: 126 NIAFMYAKKE----EWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQK 170

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 116 GDTAQAMYYIRQAIR---AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172
           G  AQA+ Y  +AI             + L S +  +G+Y KA        K FP++   
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 173 TKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS 207
               A +    G+  + + +L + +     D  + 
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 48  GNFEQAISLLKEVVRL---SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
           G   QA+   ++ +       +L E Y  LG     LG ++ A           P   AL
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQ 161
                      G   Q +  + + I     D             I  Y++A   Y  
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFYAD 109

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 10/64 (15%), Positives = 22/64 (34%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
            S     G + +A ++L   V+  PN         +    LG ++   +  +     +  
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93

Query: 101 DSAL 104
           D  +
Sbjct: 94  DETI 97

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 22/136 (16%), Positives = 46/136 (33%)

Query: 36  KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA 95
           ++L + S     G   QA+++++ +     +  +               + A +      
Sbjct: 8   QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67

Query: 96  HLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
                +S           Q+   +  +  + Q + A P +  L   LA  Y ++G  E+A
Sbjct: 68  LEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEA 127

Query: 156 AESYEQIQKLFPDNVD 171
            E    I K+     D
Sbjct: 128 LELLWNILKVNLGAQD 143

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 2/117 (1%)

Query: 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171
            +Q+G+ AQA+  I+           +++  A   +E   +E A E    I   + DN  
Sbjct: 16  LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY 75

Query: 172 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQH 228
            +        +    +  +  LE+ L  +P + +L+    L     +    E+ L+ 
Sbjct: 76  KSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC--ELAVQYNQVGRDEEALEL 130

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 45/321 (14%), Positives = 86/321 (26%), Gaps = 55/321 (17%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTL--GLAHSALGNHKSAFDFYVIAAHLSPKDS 102
                  + +  ++   +    L + Y+    G+       +  A  +Y  A    P  S
Sbjct: 76  GNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS 135

Query: 103 ALWKQ------LLTFAVQKGDTAQAMYYIRQAI-------RAEPKDISLRIHLASFYVEI 149
              ++      +         T  +MY+I QA+           + I     +A  Y + 
Sbjct: 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195

Query: 150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI 209
             Y+KA    E   +L  D  +       L         +I    +              
Sbjct: 196 KHYDKALPHLEAALELAMDIQNDRFIAISLL--------NIANSYDRS------------ 235

Query: 210 DLLVAILMENNAYEKTLQHIEHA-QIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILF- 267
                        +  ++H + A ++ R    +L  K+         + G  +KA     
Sbjct: 236 ----------GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE 285

Query: 268 ------ADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA 321
                      K   +    +  V    +     +  L Y  F + N            A
Sbjct: 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY--FEKKNLHAYIEACARSAA 343

Query: 322 ECYLSLKERAHAIMFFYKALD 342
             + S      A  F+ K L 
Sbjct: 344 AVFESSCHFEQAAAFYRKVLK 364

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 53/345 (15%), Positives = 98/345 (28%), Gaps = 73/345 (21%)

Query: 40  EASLQYAYGNFEQAISLLKEVVRLS----PNLPETYNTLGLAHSALGNHKSAFDFYVIAA 95
           E       G+    +S  +  V++       L   Y+ LG A+  L ++  A +++    
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYH---- 70

Query: 96  HLSPKDSALWKQLLTFAVQKGD-TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK 154
                        LT A   GD   +A                   +L +    +G++++
Sbjct: 71  ----------HHDLTLARTIGDQLGEAKAS---------------GNLGNTLKVLGNFDE 105

Query: 155 AAESYEQ---IQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211
           A    ++   I +   D V   +    L    G    + G                  D+
Sbjct: 106 AIVCCQRHLDISRELNDKVGEARALYNL----GNVYHAKGKSFGCPGPQ---------DV 152

Query: 212 LVAILMENNAYEKTLQHIEHA-QIVRFSGKELPLKLKVKA-----GICYLRLGNMEKAEI 265
                   +A +  +   E    +V      L  +          G  +  LGN   A I
Sbjct: 153 GEFPEEVRDALQAAVDFYEENLSLVT----ALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208

Query: 266 LFA-----DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH-----FLETNAGTDNGY 315
                     ++ +        + + +  + LG   +A +YY        +         
Sbjct: 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268

Query: 316 LYLKLAECYLSLKERAHAIMFFYKALD---RFEDNIDARLTLASL 357
               L   Y  L++   AI +  K L       D I       SL
Sbjct: 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 48  GNFEQAISLLKEVVRLSPNLPE------TYNTLGLAHSALGNHKSAFDFYVIAAHLS--- 98
           GNF  A+   ++ + ++    +       Y+ LG A+  LG  ++A ++Y     L+   
Sbjct: 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260

Query: 99  ---PKDSALWKQLLTFAVQKGDTAQAMYY------IRQAIRAEPKDISLRIHLASFYVEI 149
                ++     L        D  +A+ Y      I Q +     +      L + Y  +
Sbjct: 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320

Query: 150 GDYEKAAESYEQ 161
           G++++A    E+
Sbjct: 321 GNHDQAMHFAEK 332

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 31/145 (21%)

Query: 18  KKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLA 77
             +G+  G       G        +LQ A   +E+ +SL+  +          +  LG  
Sbjct: 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL-GDRAAQGRAFGNLGNT 196

Query: 78  HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD-TAQAMYYIRQAIRAEPKDI 136
           H  LGN + A   +              +Q L  A + GD  A+   Y            
Sbjct: 197 HYLLGNFRDAVIAH--------------EQRLLIAKEFGDKAAERRAY------------ 230

Query: 137 SLRIHLASFYVEIGDYEKAAESYEQ 161
               +L + Y+ +G++E A+E Y++
Sbjct: 231 ---SNLGNAYIFLGEFETASEYYKK 252

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 47/329 (14%), Positives = 85/329 (25%), Gaps = 55/329 (16%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPN-----LPETYNTLGLAHSALGNHKSAFDFYVIAA 95
           A +    GN ++A  L K  +   P           + LG      G    +        
Sbjct: 21  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS-------- 72

Query: 96  HLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
                  AL +Q    A Q      A++                I  +      G  + A
Sbjct: 73  ------LALMQQTEQMARQHDVWHYALW--------------SLIQQSEILFAQGFLQTA 112

Query: 156 AESYEQIQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS 207
            E+ E+  +L         P +    +  AQL     +   +       ++V  S     
Sbjct: 113 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172

Query: 208 VID---LLVAILMENNAYEKTLQHIEHA-QIVRFSGKELPLKLKVKA--GICYLRLGNME 261
            +    +L+   +     +     +     ++                  I +   G+  
Sbjct: 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 232

Query: 262 KAEILFADLQWKNAIDHADLITEV---ADTLMSLGHSNSALKYYHFLETNA-----GTDN 313
            A             ++  L  +    A   + LG    A      L  NA      +D 
Sbjct: 233 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292

Query: 314 GYLYLKLAECYLSLKERAHAIMFFYKALD 342
               L L + Y     ++ A      AL 
Sbjct: 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALK 321

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 32/320 (10%), Positives = 79/320 (24%), Gaps = 74/320 (23%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLP------ETYNTLGLAHSALGNHKSAFDFY 91
                 +     +  AI   K+       +       E +  +  ++  +     + D+ 
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166

Query: 92  VIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 151
                                       QA    ++      + +      A+ ++++  
Sbjct: 167 ---------------------------RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ 199

Query: 152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL 211
           YE A   +++   +          G  L+        +IG+ +                 
Sbjct: 200 YEDAISHFQKAYSMAEAEKQPQLMGRTLY--------NIGLCKNSQ-------------- 237

Query: 212 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA--GICYLRLGNMEKAEILF-- 267
                   + YE  + + + A  V      LP   +        + +LG ++KA      
Sbjct: 238 --------SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289

Query: 268 -----ADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE 322
                        +   + +  +  +            +          D     + +A+
Sbjct: 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF--LESKMLYADLEDFAIDVAK 347

Query: 323 CYLSLKERAHAIMFFYKALD 342
            Y   K    A  +F K   
Sbjct: 348 YYHERKNFQKASAYFLKVEQ 367

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 18/139 (12%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPE------TYNTLGLAHSALGNHKSAFDFYVIA 94
            +  Y  GNF  A+   ++ + ++    +       Y+ LG A+  LG  ++A ++Y   
Sbjct: 16  GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75

Query: 95  AHLS------PKDSALWKQLLTFAVQKGDTAQAMYY------IRQAIRAEPKDISLRIHL 142
             L+        ++     L        D  +A+ Y      I Q ++    +      L
Sbjct: 76  LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 135

Query: 143 ASFYVEIGDYEKAAESYEQ 161
            + Y  +G++++A    E+
Sbjct: 136 GNAYTALGNHDQAMHFAEK 154

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 23/175 (13%)

Query: 48  GNFEQAISLLKEVVRLSPNLPE------TYNTLGLAHSALGNHKSAFDFYVIAAHL---- 97
              EQA     +      N          +   G+    L     A  +   A+ +    
Sbjct: 50  KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109

Query: 98  -SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR------IHLASFYVEIG 150
            +P  +A+        ++  D ++A++  +QA      +  LR         +   V   
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169

Query: 151 DYEKAAESYEQIQKLFPDNVDATKTG------AQLFLKCGQTARSIGILEEYLKV 199
            +++AA S ++ + ++ +  +             + L       +   + E   +
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 19/141 (13%), Positives = 46/141 (32%), Gaps = 21/141 (14%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLS------PNLPETYNTLGLAHSALGNHKSAFDFYVIA 94
             +      F++A +  + + + +             + +G+     GN  +A   ++  
Sbjct: 33  GYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92

Query: 95  AHLS-------PKDSALWKQLLTFAVQKGDTAQAMYYIRQA--IRAEPKD-----ISLRI 140
             L           SA   ++ T A+  GD A A     ++     +  D      + R 
Sbjct: 93  RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR- 151

Query: 141 HLASFYVEIGDYEKAAESYEQ 161
            L     +  +  +A + + +
Sbjct: 152 GLGDLAQQEKNLLEAQQHWLR 172

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 47.5 bits (113), Expect = 7e-06
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 30  LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFD 89
           L         +A       N+  A+ LL +  +LS    E    L     AL   + A  
Sbjct: 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEA 172

Query: 90  FYVIAAHLSPKDSAL-----WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS 144
                  L  +D+         +LL  A    +  Q    ++Q +   P+D +L   LA 
Sbjct: 173 VLXTIP-LQDQDTRYQGLVAQIELLXQAADTPEIQQ----LQQQVAENPEDAALATQLAL 227

Query: 145 FYVEIGDYEKAAE 157
              ++G  E+A E
Sbjct: 228 QLHQVGRNEEALE 240

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 47.4 bits (112), Expect = 9e-06
 Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 1/124 (0%)

Query: 50  FEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQL 108
            E+A  L ++ + L+      ++   +   +L  +     ++        PK+  +W   
Sbjct: 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172

Query: 109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD 168
                   D +Q + +I   +  + K+     H      E   ++   +  +Q+ K    
Sbjct: 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232

Query: 169 NVDA 172
           N   
Sbjct: 233 NNSV 236

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 1/144 (0%)

Query: 63  LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALW-KQLLTFAVQKGDTAQA 121
            S    + Y+            + AF     A  L+  +  +W  + +     + D  + 
Sbjct: 92  YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE 151

Query: 122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181
           M YI   I  +PK+  +  H       + D  +  E    I      N  A +    +  
Sbjct: 152 MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 211

Query: 182 KCGQTARSIGILEEYLKVHPSDAD 205
           +       +  +++ LK    +  
Sbjct: 212 EFKLWDNELQYVDQLLKEDVRNNS 235

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 17/97 (17%), Positives = 40/97 (41%)

Query: 132 EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG 191
           +P+D   R  LA  +++  +  +A   +E++ +  PD V       +L+ +  +T  +I 
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQH 228
              + ++V   +     +  L    ++    E    H
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHH 99

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 11/75 (14%), Positives = 29/75 (38%)

Query: 98  SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157
            P+D      L    ++  + ++A+    + +  +P  +    HL   Y  +   + A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 158 SYEQIQKLFPDNVDA 172
           +Y Q  ++  +    
Sbjct: 63  TYAQGIEVAREEGTQ 77

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
            N  +A++L +E+V   P+   TY  LG  +  L     A D Y     ++ +
Sbjct: 21  DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 44.3 bits (106), Expect = 1e-05
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 34/125 (27%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G++++AI   ++ + L PN  E +  LG A+   G++  A ++Y                
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY---------------- 66

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
                             ++A+  +P +     +L + Y + GDY++A E Y++  +L P
Sbjct: 67  ------------------QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 168 DNVDA 172
           +N +A
Sbjct: 109 NNAEA 113

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 27/130 (20%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
           Y   +FE+A     + + L P+    YN     +           F   A  +  +  A 
Sbjct: 19  YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78

Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164
           +K +            A    R                 + + +  D   A + + +   
Sbjct: 79  YKLI------------AKAMSR---------------AGNAFQKQNDLSLAVQWFHRSLS 111

Query: 165 LFPDNVDATK 174
            F D     K
Sbjct: 112 EFRDPELVKK 121

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 22/112 (19%), Positives = 41/112 (36%)

Query: 63  LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM 122
                 E   T G     + N ++A  FY  A  L+P ++  +        + G+ A A+
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

Query: 123 YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174
               +AI  +P        +      +  + +A   Y++  +L PDN     
Sbjct: 67  QDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 10/140 (7%), Positives = 35/140 (25%), Gaps = 5/140 (3%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLG-LAHSALGNHKSAFDFYVIAAHLSP 99
                     +    + K+    +      Y T   + +    +   AF  + +      
Sbjct: 141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG 200

Query: 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKA 155
                    + +     +         + + +          + + ++     IGD    
Sbjct: 201 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260

Query: 156 AESYEQIQKLFPDNVDATKT 175
            +  ++    F +  +  +T
Sbjct: 261 LKVEKRRFTAFREEYEGKET 280

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 45  YAYGNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA 103
              G+ E A+  L+E ++  P    E Y  +G A+  LG+ + A + Y  A  L+P   A
Sbjct: 11  INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70

Query: 104 LWKQ 107
           L  +
Sbjct: 71  LQAR 74

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 27/125 (21%)

Query: 45  YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSAL 104
           Y   +F+ A+    +   L P            +   G++    +    A  +  ++   
Sbjct: 15  YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED 74

Query: 105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK 164
           ++Q+            A  Y R               + + Y +   Y+ A   Y +   
Sbjct: 75  YRQI------------AKAYAR---------------IGNSYFKEEKYKDAIHFYNKSLA 107

Query: 165 LFPDN 169
                
Sbjct: 108 EHRTP 112

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 24/146 (16%), Positives = 38/146 (26%), Gaps = 27/146 (18%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLS--------PNLPETYNTLGLAHSALGNHKSAFDFYV 92
           A L    G +E+     +  + +         PN+ +T N L   +   G  K A   Y 
Sbjct: 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219

Query: 93  IA-----------AHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKD 135
                             K    W         KG       +       +      P  
Sbjct: 220 EILTRAHEREFGSVDDENKPI--WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277

Query: 136 ISLRIHLASFYVEIGDYEKAAESYEQ 161
            +   +L + Y   G +E A    E 
Sbjct: 278 TTTLKNLGALYRRQGKFEAAETLEEA 303

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 22/146 (15%), Positives = 37/146 (25%), Gaps = 27/146 (18%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLS--------PNLPETYNTLGLAHSALGNHKSAFDFYV 92
           A L    G  E+     +  + +         PN+ +T N L   +   G ++ A   Y 
Sbjct: 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193

Query: 93  IA-----------AHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKD 135
                         +   K    W         K     +  Y       +      P  
Sbjct: 194 EILTRAHEKEFGSVNGDNKPI--WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251

Query: 136 ISLRIHLASFYVEIGDYEKAAESYEQ 161
            +    L + Y   G  E A    + 
Sbjct: 252 NTTLRSLGALYRRQGKLEAAHTLEDC 277

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 41.8 bits (97), Expect = 7e-04
 Identities = 9/127 (7%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLG-LAHSALGNHKSAFDFYVIAAHLSPKDSALWK 106
              +    + K+    +      Y T   + +    +   AF  + +             
Sbjct: 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429

Query: 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQI 162
             + +     +         + + +          + + ++     IGD     +  ++ 
Sbjct: 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489

Query: 163 QKLFPDN 169
              F + 
Sbjct: 490 FTAFREE 496

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 20/105 (19%), Positives = 35/105 (33%)

Query: 69  ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 128
           +   + G A  A   +  A D Y  A  ++P +              G   +A      A
Sbjct: 12  DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELA 71

Query: 129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT 173
              +PK       L     ++ DY+ A E+YE+  +   +     
Sbjct: 72  TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	687
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.98
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.98
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.93
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.93
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.91
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.91
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.91
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.9
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.9
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.89
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.89
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.89
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.89
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.88
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.85
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.85
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.84
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.84
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.84
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.84
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.84
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.84
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.83
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.82
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.81
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.8
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.8
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.8
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.8
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.8
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.78
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.77
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.76
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.75
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.75
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.74
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.74
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.73
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.7
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.67
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.67
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.66
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.66
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.66
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.66
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.66
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.65
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.64
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.63
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.63
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.61
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.6
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.6
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.59
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.59
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.57
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.56
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.55
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.55
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.55
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.54
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.54
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.52
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.51
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.5
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.5
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.49
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.49
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.49
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.48
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.47
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.46
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.46
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.46
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.46
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.45
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.44
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.44
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.43
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.42
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.39
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.39
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.38
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.37
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.37
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.36
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.35
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.34
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.33
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.31
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.12
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.1
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.0
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.99
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.96
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.96
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.89
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.86
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.8
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.76
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.74
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.67
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.67
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.6
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.57
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.57
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.42
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.39
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.37
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.28
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.17
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.16
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.04
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.87
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.87
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.76
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.6
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.27
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.23
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.18
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.03
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.96
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.83
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.69
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.53
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.52
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.4
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.33
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.31
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.21
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.1
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.0
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.94
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.93
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.79
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	95.58
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.55
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.54
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.24
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.19
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.12
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.23
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	94.15
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.84
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.21
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.17
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.6
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.21
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.19
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.37
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.32
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.07
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	83.43
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.62

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.2e-41  Score=346.64  Aligned_cols=368  Identities=18%  Similarity=0.141  Sum_probs=354.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 005632           38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD  117 (687)
Q Consensus        38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  117 (687)
                      +..|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|...+++++..+|.++.++..+|.++...|+
T Consensus         3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632          118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL  197 (687)
Q Consensus       118 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  197 (687)
                      +++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh
Q 005632          198 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID  277 (687)
Q Consensus       198 ~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  277 (687)
                      ..+|++..  ++..+|.++...|++++|+..|++++..    .|....++..+|.++...|++++|+..+++++...|. 
T Consensus       163 ~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-  235 (388)
T 1w3b_A          163 ETQPNFAV--AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-  235 (388)
T ss_dssp             HHCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred             HhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-
Confidence            99999875  7899999999999999999999999999    7888999999999999999999999999999999885 


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 005632          278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL  357 (687)
Q Consensus       278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  357 (687)
                      ++.++..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++..|+++.++..++.+
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            8899999999999999999999999999987 899999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 005632          358 LLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL  425 (687)
Q Consensus       358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  425 (687)
                      +...|++++|+..++++++..|.+.            .++..+|.++...|++++|++.++++++..+
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  370 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVFPEFA------------AAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTCH------------HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            9999999999999999999988765            4899999999999999999999999986543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-40  Score=359.64  Aligned_cols=459  Identities=14%  Similarity=0.064  Sum_probs=404.7

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      +++..+...+..+...|++++|+..|++++...|+. ..++.+|.++...|++++|+..|++++.. |.++.++..++.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~  159 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC  159 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence            466677888999999999999999999999999954 77889999999999999999999998765 6778999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632          112 AVQKGDTAQAMYYIRQAIRAE----------------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT  175 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  175 (687)
                      |...|++++|+..|++.....                |.+..++..+|.+|...|++++|+..|+++++.+|+++.++..
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  239 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ  239 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            999999999999999632222                2237899999999999999999999999999999999988777


Q ss_pred             HHH--------------------------------------HHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 005632          176 GAQ--------------------------------------LFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM  217 (687)
Q Consensus       176 la~--------------------------------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~  217 (687)
                      ++.                                      .|...|++++|+..++++++. |.+.  .++..++.++.
T Consensus       240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~~~l~~~~~  316 (597)
T 2xpi_A          240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS--DLLLCKADTLF  316 (597)
T ss_dssp             HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH--HHHHHHHHHHH
T ss_pred             HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH--HHHHHHHHHHH
Confidence            654                                      334678899999999998877 4443  47889999999


Q ss_pred             HcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHH
Q 005632          218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNS  297 (687)
Q Consensus       218 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  297 (687)
                      ..|++++|+..|++++..    .|....++..++.++...|++++|+..+++++...|. +...+..+|.++...|++++
T Consensus       317 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~  391 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEI----DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISE  391 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHH----CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHH
T ss_pred             HhcCHHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHH
Confidence            999999999999999988    6667788899999999999999999999999887774 88999999999999999999


Q ss_pred             HHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcC
Q 005632          298 ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL  377 (687)
Q Consensus       298 A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  377 (687)
                      |+..|++++.. .|.+..+|..++.++...|++++|+..|+++++..|++..++..++.++...|++++|+++|+++++.
T Consensus       392 A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          392 ARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999987 78899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCC
Q 005632          378 DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPT  457 (687)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (687)
                      .|.++            .++..+|.+|...|++++|++.|.++++..++.                              
T Consensus       471 ~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------  508 (597)
T 2xpi_A          471 FQYDP------------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------------------------------  508 (597)
T ss_dssp             CCCCH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------------------------
T ss_pred             CCCCh------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc------------------------------
Confidence            88765            488999999999999999999999888664220                              


Q ss_pred             CcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchh-hHHH
Q 005632          458 DSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEEN-QCLI  536 (687)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  536 (687)
                                                                                           ...|+. ....
T Consensus       509 ---------------------------------------------------------------------~~~p~~~~~~~  519 (597)
T 2xpi_A          509 ---------------------------------------------------------------------QSNEKPWAATW  519 (597)
T ss_dssp             ---------------------------------------------------------------------CCCSGGGHHHH
T ss_pred             ---------------------------------------------------------------------ccchhhHHHHH
Confidence                                                                                 012332 4577


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632          537 IDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV  616 (687)
Q Consensus       537 ~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  616 (687)
                      ..++.++...|++++|+.++++++...|.      ....+..++.++...|++++|...++++++.+|+++.++..++.+
T Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  593 (597)
T 2xpi_A          520 ANLGHAYRKLKMYDAAIDALNQGLLLSTN------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA  593 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            78899999999999999999999998765      457788888999999999999999999999999999999988876


Q ss_pred             HH
Q 005632          617 LS  618 (687)
Q Consensus       617 ~~  618 (687)
                      +.
T Consensus       594 ~~  595 (597)
T 2xpi_A          594 LE  595 (597)
T ss_dssp             TC
T ss_pred             Hh
Confidence            53

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=9.3e-40  Score=334.54  Aligned_cols=359  Identities=18%  Similarity=0.173  Sum_probs=344.6

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      |.+...++..|..++..|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|++..++..+|.
T Consensus        30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  109 (388)
T 1w3b_A           30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA  109 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            44566677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  190 (687)
                      ++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  189 (388)
T 1w3b_A          110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632          191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL  270 (687)
Q Consensus       191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  270 (687)
                      ..|++++..+|++..  ++..+|.++...|++++|+..+++++..    .|....++..+|.++...|++++|+..|+++
T Consensus       190 ~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  263 (388)
T 1w3b_A          190 HHFEKAVTLDPNFLD--AYINLGNVLKEARIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA  263 (388)
T ss_dssp             HHHHHHHHHCTTCHH--HHHHHHHHHHTTTCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999875  7899999999999999999999999999    7888899999999999999999999999999


Q ss_pred             hhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHH
Q 005632          271 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA  350 (687)
Q Consensus       271 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  350 (687)
                      +...|. .+.++..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++.+|++..+
T Consensus       264 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  341 (388)
T 1w3b_A          264 IELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             HHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence            998885 8899999999999999999999999999988 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCC
Q 005632          351 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGM  409 (687)
Q Consensus       351 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  409 (687)
                      +..+|.++...|++++|+..++++++..|...            .+++.+|.++..+|+
T Consensus       342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~------------~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFA------------DAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH------------HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------------HHHHhHHHHHHHccC
Confidence            99999999999999999999999999988765            599999999988774

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-40  Score=361.08  Aligned_cols=484  Identities=13%  Similarity=0.007  Sum_probs=396.1

Q ss_pred             CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632           66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus        66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      .+...+..++..+...|++++|+..|++++...|+. ..+..++.++...|++++|+..|++++.. |.++.++..++.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~  159 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC  159 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence            467789999999999999999999999999888854 67889999999999999999999998765 6789999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHH
Q 005632          146 YVEIGDYEKAAESYEQIQKLF----------------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVI  209 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  209 (687)
                      |...|++++|+..|++.....                |.+..++..+|.+|...|++++|+..|+++++.+|.+..  ++
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~  237 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE--AF  237 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH--HH
Confidence            999999999999998632222                224789999999999999999999999999999998775  67


Q ss_pred             HHHHHHHHHcchHHHHHHH---HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHH
Q 005632          210 DLLVAILMENNAYEKTLQH---IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVA  286 (687)
Q Consensus       210 ~~la~~~~~~~~~~~A~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la  286 (687)
                      ..++.++...+..+.+...   +.+....   +......++..++..+...|++++|+..|++++.. + .+...+..++
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~l~  312 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKE---DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E-KSSDLLLCKA  312 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGG---GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G-GCHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccc---hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-C-chHHHHHHHH
Confidence            7777766655544433221   2222111   11122233444567777888889999999888766 3 4788888899


Q ss_pred             HHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 005632          287 DTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEE  366 (687)
Q Consensus       287 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  366 (687)
                      .++...|++++|+..|++++.. .|.+..++..++.++...|++++|...++++++..|++..++..++.++...|++++
T Consensus       313 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  391 (597)
T 2xpi_A          313 DTLFVRSRFIDVLAITTKILEI-DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE  391 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence            9999999999999999988876 677888888899999999999999999999998889888889899999999999999


Q ss_pred             HHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhh
Q 005632          367 AITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQ  446 (687)
Q Consensus       367 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (687)
                      |+++|+++++..|.+.            .++..++.+|...|++++|++.|+++++..                      
T Consensus       392 A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------  437 (597)
T 2xpi_A          392 ARRYFSKSSTMDPQFG------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF----------------------  437 (597)
T ss_dssp             HHHHHHHHHHHCTTCH------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----------------------
T ss_pred             HHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Confidence            9999988888777654            478889999999999999988888776442                      


Q ss_pred             hHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcc
Q 005632          447 QRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNL  526 (687)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  526 (687)
                                                                                                      
T Consensus       438 --------------------------------------------------------------------------------  437 (597)
T 2xpi_A          438 --------------------------------------------------------------------------------  437 (597)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhh----
Q 005632          527 LKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQL----  602 (687)
Q Consensus       527 ~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----  602 (687)
                         |++......++.++...|++++|+.++++++...+.      ....+...+.++...|++++|+.+++++++.    
T Consensus       438 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  508 (597)
T 2xpi_A          438 ---QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT  508 (597)
T ss_dssp             ---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             ---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence               112234556778888889999999999988887665      3456667788888889999999999888887    


Q ss_pred             --CCCC-chhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCccceeccccccccchHHHHHHHHHHHhhCCCCh
Q 005632          603 --HPYS-LSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPENP  679 (687)
Q Consensus       603 --~p~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~P~~p  679 (687)
                        +|++ ..+|..++.++...|+    +.+|...+.++....|++..++..+|.++...|++++|+..|+++++++|++|
T Consensus       509 ~~~p~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          509 QSNEKPWAATWANLGHAYRKLKM----YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             CCCSGGGHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccchhhHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence              5554 5788999999999998    88999999999998999988999999999999999999999999999999999


Q ss_pred             hhhhhcc
Q 005632          680 LINLKRL  686 (687)
Q Consensus       680 ~~~l~~~  686 (687)
                      .+...++
T Consensus       585 ~~~~~l~  591 (597)
T 2xpi_A          585 MASDLLK  591 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-36  Score=319.70  Aligned_cols=373  Identities=12%  Similarity=0.063  Sum_probs=346.6

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            567789999999999999999999999999999 6999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC---------------------------------------------------------
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKD---------------------------------------------------------  135 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~---------------------------------------------------------  135 (687)
                      ...|++++|+..|++++...|.+                                                         
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            99999999999999999887632                                                         


Q ss_pred             ----------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHHH
Q 005632          136 ----------------------ISLRIHLASFYVE---IGDYEKAAESYEQIQK-----L--F-------PDNVDATKTG  176 (687)
Q Consensus       136 ----------------------~~~~~~la~~~~~---~g~~~~A~~~~~~~~~-----~--~-------p~~~~~~~~l  176 (687)
                                            ...+..+|.++..   .|++++|+..|+++++     .  .       |.++.++..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence                                  6667778888776   8999999999999999     5  4       4456789999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632          177 AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR  256 (687)
Q Consensus       177 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (687)
                      |.++...|++++|+..+++++...|. .  .++..+|.++...|++++|+..+++++..    .+....++..+|.++..
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~  316 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFPR-V--NSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFI  316 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHTSSCCTTGGGHHHHHHTT----CTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcc-H--HHHHHHHHHHHHCCCHHHHHHHHHHHhhc----CcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998 3  48999999999999999999999999988    67778899999999999


Q ss_pred             cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 005632          257 LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMF  336 (687)
Q Consensus       257 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  336 (687)
                      .|++++|+..+++++...|. ++.++..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|++++|+..
T Consensus       317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999998875 8889999999999999999999999999987 788999999999999999999999999


Q ss_pred             HHHHHHhcCCCHH------HHHHHHHHHHH---cCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHc
Q 005632          337 FYKALDRFEDNID------ARLTLASLLLE---EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAK  407 (687)
Q Consensus       337 ~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  407 (687)
                      |+++++..|+++.      ++..+|.++..   .|++++|+..+++++...|.+.            .++..+|.+|...
T Consensus       395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~la~~~~~~  462 (514)
T 2gw1_A          395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE------------QAKIGLAQMKLQQ  462 (514)
T ss_dssp             HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHHHT
T ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH------------HHHHHHHHHHHHh
Confidence            9999999998855      99999999999   9999999999999999888765            4899999999999


Q ss_pred             CCchHHHHHHHHHHHHhhhh
Q 005632          408 GMPEDFVDAIFPLVCESLCV  427 (687)
Q Consensus       408 g~~~~A~~~~~~~~~~~~~~  427 (687)
                      |++++|++.+.++++..++.
T Consensus       463 g~~~~A~~~~~~a~~~~~~~  482 (514)
T 2gw1_A          463 EDIDEAITLFEESADLARTM  482 (514)
T ss_dssp             TCHHHHHHHHHHHHHHCSSH
T ss_pred             cCHHHHHHHHHHHHHhcccc
Confidence            99999999999999877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.5e-34  Score=302.45  Aligned_cols=375  Identities=16%  Similarity=0.119  Sum_probs=322.2

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL  108 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  108 (687)
                      .-|.++..++..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+
T Consensus        21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  100 (450)
T 2y4t_A           21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR  100 (450)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            44667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDI---SLRIHL------------ASFYVEIGDYEKAAESYEQIQKLFPDNVDAT  173 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  173 (687)
                      |.++...|++++|+..|++++..+|++.   .++..+            |.++...|++++|+..|+++++..|.++.++
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  180 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR  180 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            9999999999999999999999999988   776555            6669999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHH---
Q 005632          174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA---  250 (687)
Q Consensus       174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l---  250 (687)
                      ..+|.++...|++++|+..|++++..+|.+..  ++..+|.++...|++++|+..+++++..    .|.....+..+   
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~  254 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQV  254 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCChHHHHHHHHHH
Confidence            99999999999999999999999999998875  7999999999999999999999999998    55555555444   


Q ss_pred             ---------HHHHHHcCCHHHHHHHHHHHhhhCchhh---HHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHH
Q 005632          251 ---------GICYLRLGNMEKAEILFADLQWKNAIDH---ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYL  318 (687)
Q Consensus       251 ---------~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  318 (687)
                               |.++...|++++|+..|++++...|...   ...+..+|.++...|++++|+..+++++.. .|+++.++.
T Consensus       255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~  333 (450)
T 2y4t_A          255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALK  333 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHH
Confidence                     9999999999999999999998877521   457889999999999999999999999987 799999999


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH------------cC-----CHHHHHHhcCC-CCcCCcc
Q 005632          319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLE------------EA-----KEEEAITLLSP-PKDLDSL  380 (687)
Q Consensus       319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------------~g-----~~~~A~~~~~~-a~~~~~~  380 (687)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+...            .|     +.+++.+.|.+ ++...|+
T Consensus       334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd  413 (450)
T 2y4t_A          334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD  413 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999965443            33     34455555554 4555554


Q ss_pred             cCCCCCCCh-hhhhHHHHHHHHHHHHHcCCchHH
Q 005632          381 DMNSDKSNP-WWLNEKIIMKLCHIYRAKGMPEDF  413 (687)
Q Consensus       381 ~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A  413 (687)
                      ...   ... --.....+..++.+|..+|+.+++
T Consensus       414 ~~~---~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          414 NFQ---NEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             GCC---SHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             CCC---CchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            431   000 000123455566666666655543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=4.2e-35  Score=314.14  Aligned_cols=451  Identities=14%  Similarity=0.103  Sum_probs=358.1

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA---TKTGAQLFLKCGQTARS  189 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~g~~~~A  189 (687)
                      ...|++++|+..|+ ++..+|+....+.   ..+...+...+|+..+++++...|.....   .......+....+.+.+
T Consensus       104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          104 ESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            99999999999995 8888887665542   34555666788999999998876543311   11223334556666666


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHH--------HHHcchHHHHHHHHHHHHHHhccCCCch-------HHHHHHHHHHH
Q 005632          190 IGILEEYLKVHPSDADLSVIDLLVAI--------LMENNAYEKTLQHIEHAQIVRFSGKELP-------LKLKVKAGICY  254 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~~~~~~~la~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~  254 (687)
                      ...+.+.....+....  ....++.+        ....|++++|+..+++++..    .|..       ..++..+|.++
T Consensus       180 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~  253 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYAL--LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFH  253 (537)
T ss_dssp             HHTSCCCCSSCSSHHH--HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccccccHHHH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHH
Confidence            6555443333332211  22233333        33346899999999999987    3333       34688889999


Q ss_pred             HHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHH
Q 005632          255 LRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAI  334 (687)
Q Consensus       255 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  334 (687)
                      ...|++++|+..+++++...|.  ...+..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|++++|+
T Consensus       254 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~  330 (537)
T 3fp2_A          254 FLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDL-NPEYPPTYYHRGQMYFILQDYKNAK  330 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999998874  889999999999999999999999999987 8999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHH
Q 005632          335 MFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFV  414 (687)
Q Consensus       335 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  414 (687)
                      ..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.++            .++..+|.++...|++++|+
T Consensus       331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~l~~~~~~~g~~~~A~  398 (537)
T 3fp2_A          331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP------------EVPTFFAEILTDRGDFDTAI  398 (537)
T ss_dssp             HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------------HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHhCCHHHHH
Confidence            999999999999999999999999999999999999999999998876            48999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 005632          415 DAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKK  494 (687)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (687)
                      +.+.++++..+....                                                                 
T Consensus       399 ~~~~~a~~~~~~~~~-----------------------------------------------------------------  413 (537)
T 3fp2_A          399 KQYDIAKRLEEVQEK-----------------------------------------------------------------  413 (537)
T ss_dssp             HHHHHHHHHHHHCSS-----------------------------------------------------------------
T ss_pred             HHHHHHHHcCCcchh-----------------------------------------------------------------
Confidence            999999876532100                                                                 


Q ss_pred             HHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHhh
Q 005632          495 ALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASL----------QRYEEASEIINLSMRLAY  564 (687)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~eA~~~l~~al~~~~  564 (687)
                                                        .......+...+.++...          |++++|+..+++++...|
T Consensus       414 ----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p  459 (537)
T 3fp2_A          414 ----------------------------------IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP  459 (537)
T ss_dssp             ----------------------------------CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred             ----------------------------------hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence                                              000111234566777777          999999999999999877


Q ss_pred             ccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHH
Q 005632          565 NILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCY  613 (687)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  613 (687)
                      .      ...+.+..+.++...|++++|+..++++++..|++.......
T Consensus       460 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  502 (537)
T 3fp2_A          460 R------SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT  502 (537)
T ss_dssp             T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            6      447778889999999999999999999999999998876544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=2.1e-33  Score=284.15  Aligned_cols=323  Identities=16%  Similarity=0.133  Sum_probs=299.6

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      ++..++..|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEP---KDISLRIHL------------ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA  177 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la  177 (687)
                      ...|++++|+..|++++..+|   +++.++..+            |.++...|++++|+..++++++..|.++.++..+|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999   888888777            79999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHH----------
Q 005632          178 QLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK----------  247 (687)
Q Consensus       178 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------  247 (687)
                      .++...|++++|+..+++++...|.+..  ++..+|.++...|++++|+..+++++..    .|....++          
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~  235 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTE--AFYKISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLN  235 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999875  7899999999999999999999999998    44444332          


Q ss_pred             --HHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH----HHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHH
Q 005632          248 --VKAGICYLRLGNMEKAEILFADLQWKNAIDHA----DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLA  321 (687)
Q Consensus       248 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la  321 (687)
                        ..+|.++...|++++|+..+++++...|. ++    ..+..+|.++...|++++|+..+++++.. .|+++.++..+|
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~  313 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHH
Confidence              34588899999999999999999988775 33    44667999999999999999999999987 899999999999


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 005632          322 ECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK  363 (687)
Q Consensus       322 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  363 (687)
                      .++...|++++|+..|+++++.+|++..++..++.+....++
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988776543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=2.1e-35  Score=316.43  Aligned_cols=450  Identities=12%  Similarity=0.053  Sum_probs=348.9

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      .+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHcchHHHH
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLS-VIDLLVAILMENNAYEKT  225 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~la~~~~~~~~~~~A  225 (687)
                      ...|++++|+..|+ ++...|+....+.   ..+...+...+|+..+++++...|...... ........+....+.+.+
T Consensus       104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          104 ESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            99999999999995 8888887665442   345556667889999999988765432100 011233345556666665


Q ss_pred             HHHHHHHHHHhccCCCchHHHHHHHH--------HHHHHcCCHHHHHHHHHHHhhhCchh------hHHHHHHHHHHHHh
Q 005632          226 LQHIEHAQIVRFSGKELPLKLKVKAG--------ICYLRLGNMEKAEILFADLQWKNAID------HADLITEVADTLMS  291 (687)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~  291 (687)
                      ...+.+....    .+........++        ......|++++|+..+++++...|.+      ...++..+|.++..
T Consensus       180 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          180 VSSVNTSSNY----DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHTSCCCCSS----CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccc----ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence            5554433222    333222333333        23334568999999999999887752      13468888999999


Q ss_pred             cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 005632          292 LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL  371 (687)
Q Consensus       292 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  371 (687)
                      .|++++|+..+++++.. .|. +.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+
T Consensus       256 ~~~~~~A~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  333 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINL-HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF  333 (537)
T ss_dssp             TTCHHHHHHHHHHHHHH-CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhc-CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999987 677 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhh
Q 005632          372 SPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKI  451 (687)
Q Consensus       372 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (687)
                      ++++...|.+.            .++..+|.++...|++++|++.+.++++..                           
T Consensus       334 ~~a~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------------------  374 (537)
T 3fp2_A          334 QKAQSLNPENV------------YPYIQLACLLYKQGKFTESEAFFNETKLKF---------------------------  374 (537)
T ss_dssp             HHHHHHCTTCS------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred             HHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------
Confidence            99999998876            489999999999999999999998887553                           


Q ss_pred             ccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcch
Q 005632          452 YNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEE  531 (687)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (687)
                                                                                                    |+
T Consensus       375 ------------------------------------------------------------------------------~~  376 (537)
T 3fp2_A          375 ------------------------------------------------------------------------------PT  376 (537)
T ss_dssp             ------------------------------------------------------------------------------TT
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          22


Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhccc----------CCCcchhHHHHHHHh
Q 005632          532 NQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDS----------TDPNHGFDCAKYILQ  601 (687)
Q Consensus       532 ~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~A~~~~~~~l~  601 (687)
                      ...+...++.++...|++++|+..+++++...+........-...+..+.++...          |++++|+..++++++
T Consensus       377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE  456 (537)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence            2345667789999999999999999999998876422111112233344556666          999999999999999


Q ss_pred             hCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCCCCCc
Q 005632          602 LHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKDCVPP  647 (687)
Q Consensus       602 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  647 (687)
                      .+|++..++..++.++...|+    +.+|...+.+++...|+....
T Consensus       457 ~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~al~~~~~~~~~  498 (537)
T 3fp2_A          457 LDPRSEQAKIGLAQLKLQMEK----IDEAIELFEDSAILARTMDEK  498 (537)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHC--CHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHhCCCcHHH
Confidence            999999999999999999998    778888888888887776544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-34  Score=304.21  Aligned_cols=427  Identities=14%  Similarity=0.050  Sum_probs=358.1

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      .+..++.+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999 5899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHH---------------------------
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ---TARSIGILEEY---------------------------  196 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~---------------------------  196 (687)
                      ...|++++|+..|++++...|.+................   ..+++..++.+                           
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            999999999999999999998665433322222222111   11111111100                           


Q ss_pred             ----HHh---C--------CCCCcHHHHHHHHHHHHH---cchHHHHHHHHHHHHHHh-------ccC---CCchHHHHH
Q 005632          197 ----LKV---H--------PSDADLSVIDLLVAILME---NNAYEKTLQHIEHAQIVR-------FSG---KELPLKLKV  248 (687)
Q Consensus       197 ----~~~---~--------p~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~~~~  248 (687)
                          +..   .        |++  ..++..+|.++..   .|++++|+..+++++..+       +.+   .+....++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNE--ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCH--HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcH--HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                000   0        111  3467788888876   899999999999999831       211   155678899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhh
Q 005632          249 KAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK  328 (687)
Q Consensus       249 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  328 (687)
                      .+|.++...|++++|+..+++++...|.  ..++..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-CcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999998885  899999999999999999999999999987 7889999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcC
Q 005632          329 ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKG  408 (687)
Q Consensus       329 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  408 (687)
                      ++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.++            .++..+|.++...|
T Consensus       319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~la~~~~~~~  386 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP------------EVPNFFAEILTDKN  386 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS------------HHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH------------HHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999888776            48999999999999


Q ss_pred             CchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHH
Q 005632          409 MPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEA  488 (687)
Q Consensus       409 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (687)
                      ++++|+..+.++++..+..                                                             
T Consensus       387 ~~~~A~~~~~~a~~~~~~~-------------------------------------------------------------  405 (514)
T 2gw1_A          387 DFDKALKQYDLAIELENKL-------------------------------------------------------------  405 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHTS-------------------------------------------------------------
T ss_pred             CHHHHHHHHHHHHHhhhcc-------------------------------------------------------------
Confidence            9999999999988664221                                                             


Q ss_pred             HHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhhc
Q 005632          489 LKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALAS---LQRYEEASEIINLSMRLAYN  565 (687)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~eA~~~l~~al~~~~~  565 (687)
                                       +                     ...........++.++..   .|++++|+..+++++...+.
T Consensus       406 -----------------~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  447 (514)
T 2gw1_A          406 -----------------D---------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR  447 (514)
T ss_dssp             -----------------S---------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred             -----------------c---------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence                             0                     000112356688899999   99999999999999998766


Q ss_pred             cCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHH
Q 005632          566 ILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKV  616 (687)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  616 (687)
                            .....+..+.++...|++++|+..++++++.+|+++.++..+...
T Consensus       448 ------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  492 (514)
T 2gw1_A          448 ------SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA  492 (514)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence                  456777888999999999999999999999999999998777544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=7e-34  Score=297.31  Aligned_cols=336  Identities=17%  Similarity=0.158  Sum_probs=298.0

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632           49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA  128 (687)
Q Consensus        49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  128 (687)
                      ....+...+.+++..+|.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus         7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A            7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            44567778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCChHHHHHHH
Q 005632          129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---DATKTG------------AQLFLKCGQTARSIGIL  193 (687)
Q Consensus       129 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l------------a~~~~~~g~~~~A~~~~  193 (687)
                      ++.+|+++.++..+|.++...|++++|+..|+++++.+|++.   .++..+            |.++...|++++|+..+
T Consensus        87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  166 (450)
T 2y4t_A           87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL  166 (450)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999999988   776655            66699999999999999


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632          194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK  273 (687)
Q Consensus       194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  273 (687)
                      ++++...|.+..  ++..+|.++...|++++|+..|++++..    .|....++..+|.++...|++++|+..+++++..
T Consensus       167 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  240 (450)
T 2y4t_A          167 DKILEVCVWDAE--LRELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL  240 (450)
T ss_dssp             HHHHHHCTTCHH--HHHHHHHHHHHTTCGGGGHHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCChH--HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999998875  7889999999999999999999999998    6777899999999999999999999999999988


Q ss_pred             CchhhHHHHHHH------------HHHHHhcCChHHHHHHHHHhhhccCCCcH----HHHHHHHHHHHHhhcHHHHHHHH
Q 005632          274 NAIDHADLITEV------------ADTLMSLGHSNSALKYYHFLETNAGTDNG----YLYLKLAECYLSLKERAHAIMFF  337 (687)
Q Consensus       274 ~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~  337 (687)
                      .|. ....+..+            |.++...|++++|+..|++++.. .|.++    ..+..+|.++...|++++|+..+
T Consensus       241 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  318 (450)
T 2y4t_A          241 DQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVC  318 (450)
T ss_dssp             CTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            775 55555544            99999999999999999999987 67764    47889999999999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHH
Q 005632          338 YKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIY  404 (687)
Q Consensus       338 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  404 (687)
                      +++++.+|+++.++..+|.++...|++++|+..++++++.+|.++            .++..++.+.
T Consensus       319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~l~~~~  373 (450)
T 2y4t_A          319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ------------QIREGLEKAQ  373 (450)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH------------HHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH------------HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999875            4777787543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1.2e-32  Score=278.62  Aligned_cols=322  Identities=18%  Similarity=0.175  Sum_probs=296.9

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      +++.++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHH
Q 005632          147 VEIGDYEKAAESYEQIQKLFP---DNVDATKTG------------AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL  211 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~  211 (687)
                      ...|++++|+..|+++++..|   +++.++..+            |.++...|++++|+..++++++..|.+..  ++..
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~  159 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE--LREL  159 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH--HHHH
Confidence            999999999999999999999   888888777            79999999999999999999999998875  7899


Q ss_pred             HHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHH---------
Q 005632          212 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLI---------  282 (687)
Q Consensus       212 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------  282 (687)
                      +|.++...|++++|+..+++++..    .|....++..+|.++...|++++|+..+++++...|. ....+         
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~  234 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKL----KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL  234 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTT----CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence            999999999999999999999998    7888899999999999999999999999999988775 44433         


Q ss_pred             ---HHHHHHHHhcCChHHHHHHHHHhhhccCCCcHH----HHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632          283 ---TEVADTLMSLGHSNSALKYYHFLETNAGTDNGY----LYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA  355 (687)
Q Consensus       283 ---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  355 (687)
                         ..+|.++...|++++|+..+++++.. .|.++.    ++..+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  313 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKT-EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence               34588899999999999999999987 677663    4667999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcC
Q 005632          356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKG  408 (687)
Q Consensus       356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  408 (687)
                      .++...|++++|+..++++++.+|.+.            .+...++.++...+
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~------------~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHNENDQ------------QIREGLEKAQRLLK  354 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCH------------HHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCh------------HHHHHHHHHHHHHH
Confidence            999999999999999999999999865            36777777765443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.2e-31  Score=262.11  Aligned_cols=303  Identities=14%  Similarity=0.091  Sum_probs=216.0

Q ss_pred             CChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632           30 LSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLL  109 (687)
Q Consensus        30 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  109 (687)
                      .+.+...++..|..++..|++++|+..|++++..+|.++.++..++.++...|++++|+..+++++..+|+++.++..+|
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~   97 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG   97 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            34444556666777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          110 TFAVQKG-DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       110 ~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                      .++...| ++++|+.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence            7777777 777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632          189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFA  268 (687)
Q Consensus       189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  268 (687)
                      |+..+++++...|.+..  ++..+|.++...|++++|+..+++++...+....                           
T Consensus       178 A~~~~~~al~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------  228 (330)
T 3hym_B          178 AERFFSQALSIAPEDPF--VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN---------------------------  228 (330)
T ss_dssp             HHHHHHHHHTTCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------------
T ss_pred             HHHHHHHHHHhCCCChH--HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------------
Confidence            77777777777776653  5667777777777777777777777665321100                           


Q ss_pred             HHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH
Q 005632          269 DLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI  348 (687)
Q Consensus       269 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  348 (687)
                         ...++..+.++..+|.++...|++++|+..+++++.. .|.++.++..+|.++...|++++|+.+|+++++.+|+++
T Consensus       229 ---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          229 ---EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             ---SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             ---cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence               0001234567777777777788888888888877766 677778888888888888888888888888888888888


Q ss_pred             HHHHHHHHHH-HHcCCHH
Q 005632          349 DARLTLASLL-LEEAKEE  365 (687)
Q Consensus       349 ~~~~~la~~~-~~~g~~~  365 (687)
                      .++..++.++ ...|+.+
T Consensus       305 ~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          305 FSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHHhCchh
Confidence            8888888877 4455543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=3e-30  Score=271.43  Aligned_cols=359  Identities=14%  Similarity=0.069  Sum_probs=288.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC--------
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRL---------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--------   98 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------   98 (687)
                      .+-.+|.++...|++++|++.|++++++         +|....++.++|.+|..+|++++|+.++++++.+.        
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~  132 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR  132 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence            3445799999999999999999999886         56677889999999999999999999999998763        


Q ss_pred             CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632           99 PKDSALWKQLLTFAVQK--GDTAQAMYYIRQAIRAEPKDISLRIHLASFYV---EIGDYEKAAESYEQIQKLFPDNVDAT  173 (687)
Q Consensus        99 p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~  173 (687)
                      +..+.++..+|.++...  +++++|+.+|+++++++|+++.++..++.++.   ..++.++|++.|+++++++|+++.++
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~  212 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK  212 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence            35678888888777654  57999999999999999999999999988855   45778899999999999999999999


Q ss_pred             HHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 005632          174 KTGAQLFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVK  249 (687)
Q Consensus       174 ~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  249 (687)
                      ..+|..+..    .|++++|+..+++++..+|....  ++..+|.++...|++++|+..++++++.    .|....++..
T Consensus       213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~  286 (472)
T 4g1t_A          213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD--VLRSAAKFYRRKDEPDKAIELLKKALEY----IPNNAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH--HHHHHHHHHHHcCchHHHHHHHHHHHHh----CCChHHHHHH
Confidence            888877655    46789999999999999999876  7889999999999999999999999999    8888899999


Q ss_pred             HHHHHHHc-------------------CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 005632          250 AGICYLRL-------------------GNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG  310 (687)
Q Consensus       250 l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  310 (687)
                      +|.+|...                   +.+++|+..+++++...|. ....+..+|.++...|++++|+.+|++++.. .
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~  364 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK-E  364 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-C
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-C
Confidence            99887643                   3467888899998888875 8888999999999999999999999999977 4


Q ss_pred             CCcH---HHHHHHHHH-HHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCC
Q 005632          311 TDNG---YLYLKLAEC-YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDK  386 (687)
Q Consensus       311 ~~~~---~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  386 (687)
                      +++.   .++..+|.+ +...|++++|+..|++++++.|++......+          ..+.+++++++..+|.++.   
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~----------~~l~~~~~~~l~~~p~~~~---  431 (472)
T 4g1t_A          365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK----------DKLQKIAKMRLSKNGADSE---  431 (472)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH----------HHHHHHHHHHHHHCC-CTT---
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHHHHhCCCCHH---
Confidence            4433   345666654 4578899999999999999999886543332          2334455566667787764   


Q ss_pred             CChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          387 SNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       387 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                               ++..+|.+|...|++++|++.|++.++..
T Consensus       432 ---------~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          432 ---------ALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             ---------HHHHHHHHHHHHHHCC-------------
T ss_pred             ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                     89999999999999999999999998754

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.98  E-value=3.2e-30  Score=257.45  Aligned_cols=257  Identities=13%  Similarity=0.069  Sum_probs=223.9

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      +...+...+.+++..|++++|+..++++++.+|+++.+++.+|.++...| ++++|+.+|++++..+|.++.++..+|.+
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  134 (330)
T 3hym_B           55 HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS  134 (330)
T ss_dssp             CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            33445567888999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG  191 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  191 (687)
                      +...|++++|+..+++++...|++..++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.
T Consensus       135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCC-------cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHH
Q 005632          192 ILEEYLKVHPSDA-------DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAE  264 (687)
Q Consensus       192 ~~~~~~~~~p~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  264 (687)
                      .+++++...|...       ...++..+|.++...|++++|+..+++++..    .|....++..+|.++...|++++|+
T Consensus       215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~  290 (330)
T 3hym_B          215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL----IPQNASTYSAIGYIHSLMGNFENAV  290 (330)
T ss_dssp             HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----CccchHHHHHHHHHHHHhccHHHHH
Confidence            9999999874311       1237788888888888888888888888887    5666667777777777777777777


Q ss_pred             HHHHHHhhhCchhhHHHHHHHHHHH-HhcCC
Q 005632          265 ILFADLQWKNAIDHADLITEVADTL-MSLGH  294 (687)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~  294 (687)
                      ..+++++...|. ++.++..++.++ ...|+
T Consensus       291 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          291 DYFHTALGLRRD-DTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHccCCC-chHHHHHHHHHHHHHhCc
Confidence            777777766663 666677777666 34443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.98  E-value=2.9e-30  Score=262.07  Aligned_cols=316  Identities=16%  Similarity=0.115  Sum_probs=251.0

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHH-HHHHHhccCCCCH----HHHHHHHHHHHHcCCHHH
Q 005632           46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFD-FYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~  120 (687)
                      ..+.++.+...++.+....|.          ++...|++++|+. .|.+++...|+++    ..++.+|.++...|++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   82 (368)
T 1fch_A           13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN   82 (368)
T ss_dssp             -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred             CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence            334455555555555444442          4556688888888 8888888877664    457888888888888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      |+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...
T Consensus        83 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  162 (368)
T 1fch_A           83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT  162 (368)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCcHHHH--------------HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHcCCHHHHH
Q 005632          201 PSDADLSVI--------------DLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL--PLKLKVKAGICYLRLGNMEKAE  264 (687)
Q Consensus       201 p~~~~~~~~--------------~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~  264 (687)
                      |.+......              ..++.++ ..|++++|+..+++++..    .|.  ...++..+|.++...|++++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~  237 (368)
T 1fch_A          163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL----DPTSIDPDVQCGLGVLFNLSGEYDKAV  237 (368)
T ss_dssp             TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH----STTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh----CcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            877652111              1466666 899999999999999999    565  7888999999999999999999


Q ss_pred             HHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc
Q 005632          265 ILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF  344 (687)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  344 (687)
                      ..+++++...|. .+.++..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++..
T Consensus       238 ~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  315 (368)
T 1fch_A          238 DCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ  315 (368)
T ss_dssp             HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999998875 8899999999999999999999999999987 89999999999999999999999999999999999


Q ss_pred             CCC-----------HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCC
Q 005632          345 EDN-----------IDARLTLASLLLEEAKEEEAITLLSPPKDLD  378 (687)
Q Consensus       345 p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  378 (687)
                      |++           ..++..++.++...|++++|..++.++++..
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  360 (368)
T 1fch_A          316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL  360 (368)
T ss_dssp             HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred             CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence            988           8999999999999999999999999877643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=6e-30  Score=269.17  Aligned_cols=359  Identities=14%  Similarity=0.063  Sum_probs=274.7

Q ss_pred             HHHHHHHHHHHH--hcCCHHHHHHHHHHHHHh----C--CCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------
Q 005632           34 VTKMLGEASLQY--AYGNFEQAISLLKEVVRL----S--PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------   97 (687)
Q Consensus        34 ~~~~~~~a~~~~--~~g~~~~A~~~~~~~l~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------   97 (687)
                      ....+.+-.++|  ..++.+.++..+++.+..    .  +..+..+..+|.++..+|++++|+++|++++++        
T Consensus         9 l~~~l~~l~chf~w~l~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~   88 (472)
T 4g1t_A            9 LESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ   88 (472)
T ss_dssp             HHHHHHTSCSTTTSCTTTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHhhChHHHhHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc
Confidence            333444434443  344555666666655543    2  224567889999999999999999999999876        


Q ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhC
Q 005632           98 -SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASFYVEI--GDYEKAAESYEQIQKLF  166 (687)
Q Consensus        98 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~  166 (687)
                       +|.....|.++|.+|..+|++++|+.++++++.+.        +..+.++..+|.++...  +++++|+.+|+++++++
T Consensus        89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~  168 (472)
T 4g1t_A           89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK  168 (472)
T ss_dssp             CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence             56677889999999999999999999999998853        45678888888877665  57999999999999999


Q ss_pred             CCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHH----HcchHHHHHHHHHHHHHHhccC
Q 005632          167 PDNVDATKTGAQLFLK---CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM----ENNAYEKTLQHIEHAQIVRFSG  239 (687)
Q Consensus       167 p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~  239 (687)
                      |+++.++..++.++..   .++.++|+..++++++++|++..  ++..+|..+.    ..+++++|+..+++++..    
T Consensus       169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~--~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----  242 (472)
T 4g1t_A          169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY--LKVLLALKLHKMREEGEEEGEGEKLVEEALEK----  242 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH--HHHHHHHHHHHCC------CHHHHHHHHHHHH----
T ss_pred             CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----
Confidence            9999999999888654   57789999999999999999875  5666665554    457788999999999998    


Q ss_pred             CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHH
Q 005632          240 KELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLK  319 (687)
Q Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  319 (687)
                      .|....++..+|.++...|++++|+..+++++...|. ++.++..+|.+|...+....+.                ....
T Consensus       243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~----------------~~~~  305 (472)
T 4g1t_A          243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNL----------------RENG  305 (472)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhH----------------HHHH
Confidence            8888899999999999999999999999999998885 8889999998876432221111                1112


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHH
Q 005632          320 LAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMK  399 (687)
Q Consensus       320 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  399 (687)
                      .+......+.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|+++++..+.+..         ...+++.
T Consensus       306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~---------~~~~~~~  376 (472)
T 4g1t_A          306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA---------KQLLHLR  376 (472)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH---------HHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH---------HHHHHHH
Confidence            2233344556788999999999999999999999999999999999999999998887765431         1235566


Q ss_pred             HHHH-HHHcCCchHHHHHHHHHHHHh
Q 005632          400 LCHI-YRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       400 la~~-~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      +|.+ +...|++++|+..|.+.++..
T Consensus       377 ~~~~~~~~~~~~~~Ai~~y~kal~i~  402 (472)
T 4g1t_A          377 YGNFQLYQMKCEDKAIHHFIEGVKIN  402 (472)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            6654 357788889988888877543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.97  E-value=9.7e-27  Score=245.09  Aligned_cols=352  Identities=16%  Similarity=0.098  Sum_probs=316.4

Q ss_pred             hHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHhccCCCCHHH
Q 005632           33 GVTKMLGEASLQYA----YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA----LGNHKSAFDFYVIAAHLSPKDSAL  104 (687)
Q Consensus        33 ~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~  104 (687)
                      ++...+..|..++.    .+++++|+.+|+++++.  +++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  113 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA  113 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            56777888999998    89999999999999986  678999999999999    99999999999999875  57899


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632          105 WKQLLTFAVQ----KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTG  176 (687)
Q Consensus       105 ~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l  176 (687)
                      ++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~L  189 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQL  189 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            9999999999    89999999999999875  589999999999998    89999999999999986  589999999


Q ss_pred             HHHHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHH
Q 005632          177 AQLFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKV  248 (687)
Q Consensus       177 a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  248 (687)
                      |.+|..    .+++++|+.+|+++.+..  ++  .++..+|.++..    .+++++|+.+|+++...      ....+++
T Consensus       190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~--~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~  259 (490)
T 2xm6_A          190 GYMYSRGLGVERNDAISAQWYRKSATSG--DE--LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ------GNSIAQF  259 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT------TCHHHHH
T ss_pred             HHHHhcCCCCCcCHHHHHHHHHHHHHCC--CH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHH
Confidence            999998    899999999999998864  22  378899999997    89999999999999854      3567889


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhc-----CChHHHHHHHHHhhhccCCCcHHHHHH
Q 005632          249 KAGICYLR----LGNMEKAEILFADLQWKNAIDHADLITEVADTLMSL-----GHSNSALKYYHFLETNAGTDNGYLYLK  319 (687)
Q Consensus       249 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~  319 (687)
                      .+|.++..    .+++++|+.+|+++...   .++.++..+|.++...     +++++|+.+|+++.+.   .++.+++.
T Consensus       260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~  333 (490)
T 2xm6_A          260 RLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---GDATAQAN  333 (490)
T ss_dssp             HHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---CCHHHHHH
Confidence            99999999    89999999999999765   3677899999999998     9999999999999864   56789999


Q ss_pred             HHHHHHHhh---cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHhcCCCCcCCcccCCCCCCChhhh
Q 005632          320 LAECYLSLK---ERAHAIMFFYKALDRFEDNIDARLTLASLLLE----EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWL  392 (687)
Q Consensus       320 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  392 (687)
                      +|.+|...|   ++++|+.+|+++++.  +++.+++.+|.++..    .+++++|+.+|+++.+...             
T Consensus       334 lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-------------  398 (490)
T 2xm6_A          334 LGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL-------------  398 (490)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-------------
Confidence            999999865   899999999999987  679999999999999    8999999999999887542             


Q ss_pred             hHHHHHHHHHHHHH----cCCchHHHHHHHHHHHHh
Q 005632          393 NEKIIMKLCHIYRA----KGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       393 ~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  424 (687)
                       +.+++.+|.+|..    .+++++|+.+|++.++..
T Consensus       399 -~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          399 -SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             -HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence             2589999999998    899999999999998775

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1.8e-29  Score=256.28  Aligned_cols=295  Identities=14%  Similarity=0.096  Sum_probs=262.5

Q ss_pred             HHHhcCCHHHHHH-HHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC
Q 005632           43 LQYAYGNFEQAIS-LLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD  117 (687)
Q Consensus        43 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  117 (687)
                      ++...|+|++|+. .|++++...|+++    ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            6667899999999 9999999888764    5699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHH
Q 005632          118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK----------------TGAQLFL  181 (687)
Q Consensus       118 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----------------~la~~~~  181 (687)
                      +++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|.+...+.                .++.++ 
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence            999999999999999999999999999999999999999999999999998876654                466666 


Q ss_pred             HcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHH
Q 005632          182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNME  261 (687)
Q Consensus       182 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (687)
                      ..|++++|+..+++++...|......++..+|.++...|++++|+..+++++..    .|....++..+|.++...|+++
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPNDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999544458899999999999999999999999999    7778899999999999999999


Q ss_pred             HHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCc-----------HHHHHHHHHHHHHhhcH
Q 005632          262 KAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDN-----------GYLYLKLAECYLSLKER  330 (687)
Q Consensus       262 ~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~la~~~~~~g~~  330 (687)
                      +|+..+++++...|. .+.++..+|.++...|++++|+..|++++.. .|.+           +.++..+|.++..+|++
T Consensus       269 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          269 EAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNM-QRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            999999999998875 8899999999999999999999999999877 4554           89999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 005632          331 AHAIMFFYKALDRF  344 (687)
Q Consensus       331 ~~A~~~~~~al~~~  344 (687)
                      ++|..+++++++..
T Consensus       347 ~~A~~~~~~~l~~~  360 (368)
T 1fch_A          347 DAYGAADARDLSTL  360 (368)
T ss_dssp             GGHHHHHTTCHHHH
T ss_pred             HhHHHhHHHHHHHH
Confidence            99999998877653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=2.3e-28  Score=247.62  Aligned_cols=285  Identities=14%  Similarity=0.060  Sum_probs=237.2

Q ss_pred             HHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632           89 DFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus        89 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  164 (687)
                      ..+.+.+...+.++    ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44555555555444    34888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH--------HHHHHHHHHHHHcchHHHHHHHHHHHHHHh
Q 005632          165 LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--------SVIDLLVAILMENNAYEKTLQHIEHAQIVR  236 (687)
Q Consensus       165 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  236 (687)
                      .+|+++.++..+|.++...|++++|+..++++++..|++...        ..+..+|.++...|++++|+..+++++.. 
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-  206 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-  206 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH-
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-
Confidence            888888888888888888888888888888888888765442        12334589999999999999999999999 


Q ss_pred             ccCCCc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcH
Q 005632          237 FSGKEL--PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNG  314 (687)
Q Consensus       237 ~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  314 (687)
                         .|.  ...++..+|.++...|++++|+..+++++...|. ++.++..+|.++...|++++|+..|++++.. .|+++
T Consensus       207 ---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~  281 (365)
T 4eqf_A          207 ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFI  281 (365)
T ss_dssp             ---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred             ---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCch
Confidence               565  7788999999999999999999999999998885 8899999999999999999999999999988 89999


Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCc
Q 005632          315 YLYLKLAECYLSLKERAHAIMFFYKALDRFED------------NIDARLTLASLLLEEAKEEEAITLLSPPKDLDS  379 (687)
Q Consensus       315 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  379 (687)
                      .++..+|.++...|++++|+..|++++++.|+            +..++..++.++...|+.+.+..+..+.++...
T Consensus       282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~  358 (365)
T 4eqf_A          282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLL  358 (365)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999987            357889999999999999999999988665443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=4e-26  Score=240.41  Aligned_cols=332  Identities=12%  Similarity=0.066  Sum_probs=293.5

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005632           52 QAISLLKEVVRLSPNLPETYNTLGLAHSA----LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAMY  123 (687)
Q Consensus        52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~  123 (687)
                      .++..++++.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+.  +++.+++.+|.+|..    .+++++|+.
T Consensus        25 ~~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  100 (490)
T 2xm6_A           25 VNLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI  100 (490)
T ss_dssp             CCHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            34566665544  5789999999999999    89999999999999876  678999999999999    999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 005632          124 YIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEE  195 (687)
Q Consensus       124 ~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~  195 (687)
                      +|+++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  +++.+++.+|.+|..    .+++++|+.+|++
T Consensus       101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  176 (490)
T 2xm6_A          101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK  176 (490)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            99999875  588999999999999    89999999999999875  689999999999998    8899999999999


Q ss_pred             HHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH----cCCHHHHHHHH
Q 005632          196 YLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR----LGNMEKAEILF  267 (687)
Q Consensus       196 ~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~  267 (687)
                      +.+..  ++  .++..+|.+|..    .+++++|+.+|+++.+.      .+..+++.+|.++..    .+++++|+.+|
T Consensus       177 a~~~~--~~--~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~  246 (490)
T 2xm6_A          177 AAEQG--NV--WSCNQLGYMYSRGLGVERNDAISAQWYRKSATS------GDELGQLHLADMYYFGIGVTQDYTQSRVLF  246 (490)
T ss_dssp             HHHTT--CH--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHCC--CH--HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            98863  33  478999999998    89999999999999865      346788999999997    89999999999


Q ss_pred             HHHhhhCchhhHHHHHHHHHHHHh----cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh-----hcHHHHHHHHH
Q 005632          268 ADLQWKNAIDHADLITEVADTLMS----LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSL-----KERAHAIMFFY  338 (687)
Q Consensus       268 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~  338 (687)
                      +++...   .++.++..+|.++..    .+++++|+.+|+++.+.   .++.+++.+|.+|...     +++++|+.+|+
T Consensus       247 ~~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~  320 (490)
T 2xm6_A          247 SQSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYT  320 (490)
T ss_dssp             HHHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred             HHHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence            999875   366789999999998    89999999999998844   6788999999999998     89999999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHH----cCCch
Q 005632          339 KALDRFEDNIDARLTLASLLLEEA---KEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA----KGMPE  411 (687)
Q Consensus       339 ~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~  411 (687)
                      ++++.  +++.+++.+|.++...|   ++++|+.+|+++.+...              +.+++.+|.+|..    .++++
T Consensus       321 ~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~--------------~~a~~~Lg~~y~~g~g~~~~~~  384 (490)
T 2xm6_A          321 KSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGE--------------KAAQFNLGNALLQGKGVKKDEQ  384 (490)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHcCCCCCCCHH
Confidence            99886  56889999999999877   89999999999987632              2589999999999    89999


Q ss_pred             HHHHHHHHHHHH
Q 005632          412 DFVDAIFPLVCE  423 (687)
Q Consensus       412 ~A~~~~~~~~~~  423 (687)
                      +|+++|++.++.
T Consensus       385 ~A~~~~~~A~~~  396 (490)
T 2xm6_A          385 QAAIWMRKAAEQ  396 (490)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC
Confidence            999998887643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=5e-28  Score=245.17  Aligned_cols=268  Identities=13%  Similarity=0.096  Sum_probs=208.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN  145 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence            44888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTG----------AQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME  218 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~  218 (687)
                      .|++++|+..|+++++..|++..++..+          |.++...|++++|+..+++++...|......++..+|.++..
T Consensus       146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  225 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL  225 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence            8888888888888888877765555444          778888888888888888888888874444477788888888


Q ss_pred             cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHH
Q 005632          219 NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA  298 (687)
Q Consensus       219 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  298 (687)
                      .|++++|+..+++++..    .|....++..+|.++...|++++|+..|++++...|. .+.++..+|.++...|++++|
T Consensus       226 ~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          226 SGEFNRAIDAFNAALTV----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred             CCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence            88888888888888887    6667778888888888888888888888888877774 678888888888888888888


Q ss_pred             HHHHHHhhhccCCC------------cHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 005632          299 LKYYHFLETNAGTD------------NGYLYLKLAECYLSLKERAHAIMFFYKALD  342 (687)
Q Consensus       299 ~~~~~~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  342 (687)
                      +..|++++.. .|.            ...+|..++.++..+|+.+.+.....+.+.
T Consensus       301 ~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          301 VSNFLTALSL-QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHHHHHHH-HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHh-CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            8888887765 222            367888899999999998888877766443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.96  E-value=7.3e-26  Score=240.95  Aligned_cols=351  Identities=9%  Similarity=-0.003  Sum_probs=229.9

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632           57 LKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI  136 (687)
Q Consensus        57 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  136 (687)
                      |+++++.+|.+..+|..++.. ...|++++|...|++++...|.+...|..++..+...|++++|...|++++...| +.
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~   79 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI   79 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence            678889999999999999984 7889999999999999999999999999999999999999999999999999999 67


Q ss_pred             HHHHHHHHH-HHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHh
Q 005632          137 SLRIHLASF-YVEIGDYEKAAE----SYEQIQKL---FPDNVDATKTGAQLFLK---------CGQTARSIGILEEYLKV  199 (687)
Q Consensus       137 ~~~~~la~~-~~~~g~~~~A~~----~~~~~~~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~  199 (687)
                      ..|..++.. ....|++++|.+    .|++++..   +|.+..+|...+.+...         .|++++|..+|++++. 
T Consensus        80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-  158 (530)
T 2ooe_A           80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-  158 (530)
T ss_dssp             HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence            788888754 345677777665    77777764   45677888888887765         7899999999999998 


Q ss_pred             CCCCCcHHHHHHHHHHH-------------HHcchHHHHHHHHHHHHHH---hcc----CCCc-------hHHHHHHHHH
Q 005632          200 HPSDADLSVIDLLVAIL-------------MENNAYEKTLQHIEHAQIV---RFS----GKEL-------PLKLKVKAGI  252 (687)
Q Consensus       200 ~p~~~~~~~~~~la~~~-------------~~~~~~~~A~~~~~~~~~~---~~~----~~~~-------~~~~~~~l~~  252 (687)
                      .|.......|.......             ...+++..|...+......   +..    ..|.       ....|.....
T Consensus       159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~  238 (530)
T 2ooe_A          159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ  238 (530)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence            56554222333322221             1234566666555542211   000    0111       0122322222


Q ss_pred             HHHHc----CCH----HHHHHHHHHHhhhCchhhHHHHHHHHHHHHh-------cCChH-------HHHHHHHHhhhccC
Q 005632          253 CYLRL----GNM----EKAEILFADLQWKNAIDHADLITEVADTLMS-------LGHSN-------SALKYYHFLETNAG  310 (687)
Q Consensus       253 ~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~~~~  310 (687)
                      .....    ++.    ..++..|++++...|. ++.+|..+|..+..       .|+++       +|+..|++++....
T Consensus       239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~  317 (530)
T 2ooe_A          239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL  317 (530)
T ss_dssp             HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence            11111    122    3555666666666553 66666666666654       56655       66666666664225


Q ss_pred             CCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCCh
Q 005632          311 TDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI-DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNP  389 (687)
Q Consensus       311 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  389 (687)
                      |+++.+|..+|.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|+.+|+++++..|...       
T Consensus       318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~-------  390 (530)
T 2ooe_A          318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH-------  390 (530)
T ss_dssp             SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT-------
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch-------
Confidence            66666666666666666666666666666666666664 4666666666666666666666666666544332       


Q ss_pred             hhhhHHHHHHHHHH-HHHcCCchHHHHHHHHHHHH
Q 005632          390 WWLNEKIIMKLCHI-YRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       390 ~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~  423 (687)
                           .++...+.+ +...|++++|...|++.++.
T Consensus       391 -----~~~~~~a~~~~~~~~~~~~A~~~~e~al~~  420 (530)
T 2ooe_A          391 -----HVYVTAALMEYYCSKDKSVAFKIFELGLKK  420 (530)
T ss_dssp             -----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence                 133333333 23466666666666665544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=1.3e-26  Score=230.97  Aligned_cols=285  Identities=15%  Similarity=0.086  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHH-HH-HHHHcchHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLL-VA-ILMENNAYEKTL  226 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l-a~-~~~~~~~~~~A~  226 (687)
                      .|++++|+..++++++..|.+...+..+...                    .|...   ....+ +. ++...|++++|+
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~---~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQA--------------------DVDID---DLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------CCTTSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhHH--------------------HHHHH---HHHHHHHhHHHHHcccHHHHH
Confidence            5555555555555555555444333322110                    01100   01122 44 577889999999


Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632          227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE  306 (687)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  306 (687)
                      ..+++++..    .+....++..+|.++...|++++|+..+++++...|. .+.++..+|.++...|++++|+..+++++
T Consensus       159 ~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  233 (327)
T 3cv0_A          159 TLLHAALEM----NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRAL  233 (327)
T ss_dssp             HHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhh----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999988    6777888999999999999999999999999888774 78899999999999999999999999999


Q ss_pred             hccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHcCCHHHHHHhcCCC
Q 005632          307 TNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED------------NIDARLTLASLLLEEAKEEEAITLLSPP  374 (687)
Q Consensus       307 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a  374 (687)
                      .. .|.++.++..+|.++...|++++|+..|+++++..|+            +..++..++.++...|++++|...++++
T Consensus       234 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          234 DI-NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             Hc-CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            87 7899999999999999999999999999999999999            7899999999999999999999999999


Q ss_pred             CcCCcccC
Q 005632          375 KDLDSLDM  382 (687)
Q Consensus       375 ~~~~~~~~  382 (687)
                      ++..|.+.
T Consensus       313 l~~~~~~~  320 (327)
T 3cv0_A          313 VEPFAKEF  320 (327)
T ss_dssp             SHHHHHHT
T ss_pred             HHhcchhh
Confidence            88766543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=5.2e-27  Score=233.72  Aligned_cols=268  Identities=15%  Similarity=0.155  Sum_probs=219.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      +...++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            55668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHL--------------AS-FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA  177 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la  177 (687)
                      ...|++++|+..+++++...|.+...+..+              +. ++...|++++|+..++++++..|.++.++..+|
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  179 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG  179 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            999999999999999999999988777766              55 677788888888888888888888888888888


Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc
Q 005632          178 QLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL  257 (687)
Q Consensus       178 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (687)
                      .++...|++++|+..+++++...|++..  ++..+|.++...|++++|+..+++++..    .|....++..+|.++...
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRPDDAQ--LWNKLGATLANGNRPQEALDAYNRALDI----NPGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHh
Confidence            8888888888888888888888887764  6778888888888888888888888877    566666777777777777


Q ss_pred             CCHHHHHHHHHHHhhhCchh-----------hHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632          258 GNMEKAEILFADLQWKNAID-----------HADLITEVADTLMSLGHSNSALKYYHFLE  306 (687)
Q Consensus       258 ~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~  306 (687)
                      |++++|+..+++++...|..           ...++..++.++...|++++|...+++++
T Consensus       254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            77777777777776655431           45555556666666666666655555433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=6.6e-27  Score=233.96  Aligned_cols=258  Identities=10%  Similarity=0.042  Sum_probs=174.2

Q ss_pred             hccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHH
Q 005632           95 AHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD-YEKAAESYEQIQKLFPDNVDAT  173 (687)
Q Consensus        95 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~  173 (687)
                      +.++|++..++..+|.++...|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|++++.++|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            444555555555555555555556666666666666666555555566666655554 6666666666666666655566


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632          174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC  253 (687)
Q Consensus       174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (687)
                      +.+|.++...|++++|+..|+++++++|++..  +|+.+|.++...|++++|+.++++++..    +|.+..+++.+|.+
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~--a~~~lg~~~~~~g~~~eAl~~~~~al~l----~P~~~~a~~~lg~~  243 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYH--AWQHRQWVIQEFKLWDNELQYVDQLLKE----DVRNNSVWNQRYFV  243 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence            66666666666666666666666665555543  4555566666666666666666666655    55555555666666


Q ss_pred             HHH-cCCHHHH-----HHHHHHHhhhCchhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Q 005632          254 YLR-LGNMEKA-----EILFADLQWKNAIDHADLITEVADTLMSLG--HSNSALKYYHFLETNAGTDNGYLYLKLAECYL  325 (687)
Q Consensus       254 ~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  325 (687)
                      +.. .|..++|     +..|++++..+|. +..+|..++.++...|  ++++|++.+.++ .. .|+++.++..+|.+|.
T Consensus       244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~  320 (382)
T 2h6f_A          244 ISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYE  320 (382)
T ss_dssp             HHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHH
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHH
Confidence            555 3333444     4677777777774 7788888888888877  688999988887 44 7889999999999999


Q ss_pred             Hhh--------c-HHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHc
Q 005632          326 SLK--------E-RAHAIMFFYKA-LDRFEDNIDARLTLASLLLEE  361 (687)
Q Consensus       326 ~~g--------~-~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~  361 (687)
                      .+|        + +++|+.+|+++ ++++|.....|..++..+...
T Consensus       321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          321 DMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            885        3 58999999999 999999999999998887654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=1.2e-26  Score=232.15  Aligned_cols=251  Identities=15%  Similarity=0.124  Sum_probs=215.1

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      ....+...|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+|..+|.+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            455677788889999999999999999999999999999999999999996 9999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHH-
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTARS-  189 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A-  189 (687)
                      +...|++++|+..|++++.++|++..+|+.+|.++...|++++|+.+|+++++++|++..+|+.+|.++.. .|.+++| 
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 5555777 


Q ss_pred             ----HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC-----
Q 005632          190 ----IGILEEYLKVHPSDADLSVIDLLVAILMENN--AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG-----  258 (687)
Q Consensus       190 ----~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----  258 (687)
                          +..|++++.++|++..  +|+.++.++...|  ++++|+..+.++ ..    .+....++..+|.++...|     
T Consensus       256 ~~~el~~~~~Al~l~P~~~~--a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~----~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          256 LEREVQYTLEMIKLVPHNES--AWNYLKGILQDRGLSKYPNLLNQLLDL-QP----SHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             HHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTTTCGGGCHHHHHHHHHH-TT----TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHccCccchHHHHHHHHHh-cc----CCCCHHHHHHHHHHHHHHhccccc
Confidence                4889999999998875  7888898888877  688888888776 44    6777788888888888874     


Q ss_pred             ----CHHHHHHHHHHH-hhhCchhhHHHHHHHHHHHHh
Q 005632          259 ----NMEKAEILFADL-QWKNAIDHADLITEVADTLMS  291 (687)
Q Consensus       259 ----~~~~A~~~~~~~-~~~~~~~~~~~~~~la~~~~~  291 (687)
                          .+++|+.+|+++ +..+|. ....|..++..+..
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQS  365 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHH
Confidence                247888888888 777774 77777777766654

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.95  E-value=5.8e-25  Score=233.99  Aligned_cols=377  Identities=12%  Similarity=0.033  Sum_probs=286.1

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      |.++..++..+. +...|++++|...|+++++.+|.++.+|..++..+...|++++|...|++++...| +...|..++.
T Consensus        10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~   87 (530)
T 2ooe_A           10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLS   87 (530)
T ss_dssp             TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHH
Confidence            446677777777 47899999999999999999999999999999999999999999999999999999 5778888885


Q ss_pred             -HHHHcCCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCH--H
Q 005632          111 -FAVQKGDTAQAMY----YIRQAIRA---EPKDISLRIHLASFYVE---------IGDYEKAAESYEQIQKLFPDNV--D  171 (687)
Q Consensus       111 -~~~~~g~~~~A~~----~~~~a~~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~~~~p~~~--~  171 (687)
                       +....|++++|.+    .|++++..   +|.+..+|...+.....         .|+++.|..+|+++++ .|.+.  .
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~  166 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQ  166 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHH
Confidence             4456688777665    77777764   56778888888887765         7889999999999998 56532  2


Q ss_pred             HHHHHHHH---------------------------------------------------------------HHHc-----
Q 005632          172 ATKTGAQL---------------------------------------------------------------FLKC-----  183 (687)
Q Consensus       172 ~~~~la~~---------------------------------------------------------------~~~~-----  183 (687)
                      .+......                                                               ....     
T Consensus       167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~  246 (530)
T 2ooe_A          167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR  246 (530)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence            22111110                                                               0000     


Q ss_pred             -CCh----HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-------cchHH-------HHHHHHHHHHH-HhccCCCch
Q 005632          184 -GQT----ARSIGILEEYLKVHPSDADLSVIDLLVAILME-------NNAYE-------KTLQHIEHAQI-VRFSGKELP  243 (687)
Q Consensus       184 -g~~----~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~~~-~~~~~~~~~  243 (687)
                       ++.    ..++..|++++...|.++.  +|..+|.++..       .|+++       +|+..|++++. .    .|..
T Consensus       247 ~~~~~~~~~~a~~~y~~al~~~p~~~~--~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~----~p~~  320 (530)
T 2ooe_A          247 TEDQTLITKRVMFAYEQCLLVLGHHPD--IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----LKKN  320 (530)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----CSSC
T ss_pred             CCcchhHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----Cccc
Confidence             111    2556678888888887765  67788887775       67766       78888888886 5    5667


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHH
Q 005632          244 LKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAEC  323 (687)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~  323 (687)
                      ..++..++.++...|++++|...|++++...|.....+|..++.++...|++++|...|++++.. .|.....+...+.+
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~~~~~~~~~~~a~~  399 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-ARTRHHVYVTAALM  399 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cCCchHHHHHHHHH
Confidence            78888888888888888888888888887766422357888888888888888888888888876 55566666655554


Q ss_pred             -HHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHH
Q 005632          324 -YLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCH  402 (687)
Q Consensus       324 -~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~  402 (687)
                       +...|++++|...|+++++..|+++.++..++.++...|+.++|..+|++++...|.++.        ....++...+.
T Consensus       400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~--------~~~~lw~~~~~  471 (530)
T 2ooe_A          400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--------KSGEIWARFLA  471 (530)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG--------GCHHHHHHHHH
T ss_pred             HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH--------HHHHHHHHHHH
Confidence             345788888888888888888888888888888888888888888888888876554331        01235566677


Q ss_pred             HHHHcCCchHHHHHHHHHHHHhh
Q 005632          403 IYRAKGMPEDFVDAIFPLVCESL  425 (687)
Q Consensus       403 ~~~~~g~~~~A~~~~~~~~~~~~  425 (687)
                      .....|+.+.+..++.++++..+
T Consensus       472 ~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          472 FESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCc
Confidence            77778888888888888777665

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=3.4e-26  Score=212.03  Aligned_cols=200  Identities=21%  Similarity=0.260  Sum_probs=154.6

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      |++...++..|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45566777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          111 FAVQK-----------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       111 ~~~~~-----------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      ++...           |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            88888           888888888888888888888888888888888888888888888888888 788888888888


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632          180 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ  233 (687)
Q Consensus       180 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  233 (687)
                      +...|++++|+..|+++++.+|++..  ++..+|.++...|++++|+..++++-
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLD--LRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTC---------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            88888888888888888888888765  67788888888888888888877653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=1.8e-24  Score=209.56  Aligned_cols=277  Identities=13%  Similarity=0.116  Sum_probs=196.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA  119 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  119 (687)
                      ....+..|+|++|+..++++...+|++ .+....++.+|+..|++++|+..++.   .+|....++..++..+...|+++
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence            566778899999999988877777766 45778888899999999999887755   25556777888888888888999


Q ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632          120 QAMYYIRQAIRA--EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL  197 (687)
Q Consensus       120 ~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  197 (687)
                      +|+..+++++..  +|+++.+++.+|.++...|++++|+..+++     |+++.++..+|.++..+|++++|+..+++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~  157 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQ  157 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999988875  588888899999999999999999988887     7888888889999999999999999999988


Q ss_pred             HhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchh
Q 005632          198 KVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID  277 (687)
Q Consensus       198 ~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  277 (687)
                      +.+|++........+..++...|++++|+..|++++..    .|.+..++..+|.++...|++++|+..|++++..+|. 
T Consensus       158 ~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-  232 (291)
T 3mkr_A          158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-  232 (291)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             hhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence            88887642111111223333457777777777777776    5555666666666666666666666666666665553 


Q ss_pred             hHHHHHHHHHHHHhcCChHH-HHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHH
Q 005632          278 HADLITEVADTLMSLGHSNS-ALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIM  335 (687)
Q Consensus       278 ~~~~~~~la~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  335 (687)
                      ++.++..+|.++...|++.+ +..++++++.. .|+++.+.    .+..+.+.|+++..
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-~P~~~~~~----d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-HRSHPFIK----EYRAKENDFDRLVL  286 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHH----HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCCChHHH----HHHHHHHHHHHHHH
Confidence            55556666666666665544 34555555554 55555433    23334444444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=2.9e-25  Score=205.79  Aligned_cols=200  Identities=17%  Similarity=0.204  Sum_probs=167.6

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 005632          145 FYVEI-----------GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLV  213 (687)
Q Consensus       145 ~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la  213 (687)
                      ++...           |++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++.+ +++.  ++..+|
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~--~~~~la  158 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE--IRSALA  158 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH--HHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH--HHHHHH
Confidence            99999           999999999999999999999999999999999999999999999999988 5543  788899


Q ss_pred             HHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          214 AILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       214 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      .++...|++++|+..|+++++.    .|....++..+|.++...|++++|+..++++-
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQ----APKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999999999988    77788888888888888888888888887753

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=4.1e-25  Score=213.62  Aligned_cols=251  Identities=12%  Similarity=0.078  Sum_probs=207.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC----HHHHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD----SALWKQLLT  110 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~  110 (687)
                      ..++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+    ..++..+|.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999998 4433    445899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  190 (687)
                      ++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|......+++++|+
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999995555566999999


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHHcch---HHHHHHHHHHHHHHhccCCC----chHHHHHHHHHHHHHcCCHHHH
Q 005632          191 GILEEYLKVHPSDADLSVIDLLVAILMENNA---YEKTLQHIEHAQIVRFSGKE----LPLKLKVKAGICYLRLGNMEKA  263 (687)
Q Consensus       191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A  263 (687)
                      ..++++++.+|++..  ++..+|.++...|+   +++|+..++++++.....+.    ....++..+|.++...|++++|
T Consensus       163 ~~~~~a~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          163 SSFVKVLELKPNIYI--GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHSTTCHH--HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCccchH--HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999865  78889999999998   88899999999987421111    0224555666666666666666


Q ss_pred             HHHHHHHhhhCchhhHHHHHHHHHHH
Q 005632          264 EILFADLQWKNAIDHADLITEVADTL  289 (687)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~la~~~  289 (687)
                      +.++++++..+|. ++.++..++.+.
T Consensus       241 ~~~~~~al~~~p~-~~~a~~~l~~~~  265 (272)
T 3u4t_A          241 DAAWKNILALDPT-NKKAIDGLKMKL  265 (272)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHC---
T ss_pred             HHHHHHHHhcCcc-HHHHHHHhhhhh
Confidence            6666666666553 555555444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.2e-24  Score=204.61  Aligned_cols=240  Identities=16%  Similarity=0.082  Sum_probs=191.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005632          101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN-------VDAT  173 (687)
Q Consensus       101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~  173 (687)
                      .+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|++       +.++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            34566667777777777777777777777766 666677777777777777777777777777766654       5677


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632          174 KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC  253 (687)
Q Consensus       174 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (687)
                      ..+|.++...|++++|+..+++++...|.          +.++...|++++|+..+++++..    .|....++..+|.+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~  148 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------ADILTKLRNAEKELKKAEAEAYV----NPEKAEEARLEGKE  148 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch----------hHHHHHHhHHHHHHHHHHHHHHc----CcchHHHHHHHHHH
Confidence            77777777777777777777777777665          24466677888888888888887    77778888888888


Q ss_pred             HHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHH
Q 005632          254 YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHA  333 (687)
Q Consensus       254 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  333 (687)
                      +...|++++|+..+++++...|. ++.++..+|.++...|++++|+..+++++.. .|+++.++..+|.++...|++++|
T Consensus       149 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          149 YFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhhHHHH
Confidence            88888888888888888888775 7888999999999999999999999999887 788999999999999999999999


Q ss_pred             HHHHHHHHHhc------CCCHHHHHHHHHH
Q 005632          334 IMFFYKALDRF------EDNIDARLTLASL  357 (687)
Q Consensus       334 ~~~~~~al~~~------p~~~~~~~~la~~  357 (687)
                      +..|+++++.+      |++..++..++.+
T Consensus       227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          227 LETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999998      8888887777654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.7e-24  Score=206.02  Aligned_cols=240  Identities=13%  Similarity=0.118  Sum_probs=212.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-------HHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-------SALW  105 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~  105 (687)
                      .+..++.+|..++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..+.+++...|++       +.++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            56778889999999999999999999999999 889999999999999999999999999999988876       7889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632          106 KQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ  185 (687)
Q Consensus       106 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  185 (687)
                      ..+|.++...|++++|+..|++++...|.        +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999886        4567778889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHH
Q 005632          186 TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEI  265 (687)
Q Consensus       186 ~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  265 (687)
                      +++|+..+++++..+|.+..  ++..+|.++...|++++|+..+++++..    .|....++..+|.++...|++++|+.
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDAR--GYSNRAAALAKLMSFPEAIADCNKAIEK----DPNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999998764  7889999999999999999999999998    77778888889999999999999999


Q ss_pred             HHHHHhhhCc-----hhhHHHHHHHHH
Q 005632          266 LFADLQWKNA-----IDHADLITEVAD  287 (687)
Q Consensus       266 ~~~~~~~~~~-----~~~~~~~~~la~  287 (687)
                      .+++++...|     +.+..++..++.
T Consensus       229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          229 TLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            9998887762     124555544443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.93  E-value=6.2e-24  Score=205.82  Aligned_cols=277  Identities=9%  Similarity=0.039  Sum_probs=240.4

Q ss_pred             HHHHHcCChHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           76 LAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEK  154 (687)
Q Consensus        76 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~  154 (687)
                      ...+..|+|.+|+..++++...+|++ .+....++.+|...|++++|+..++.   .+|.+..++..++..+...|++++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence            45678899999999999998888887 46778899999999999999998866   356667788899999999999999


Q ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632          155 AAESYEQIQKL--FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA  232 (687)
Q Consensus       155 A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  232 (687)
                      |++.+++++..  +|+++.+++.+|.++...|++++|+..+++     |.+..  ++..+|.++...|++++|+..++++
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~--~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE--CMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH--HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999876  699999999999999999999999999998     66654  7889999999999999999999999


Q ss_pred             HHHhccCCCchHHHHHHHH--HHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC
Q 005632          233 QIVRFSGKELPLKLKVKAG--ICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG  310 (687)
Q Consensus       233 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  310 (687)
                      +..    .|.........+  .++...|++++|+..|++++...|. ++.++..+|.++...|++++|+..|++++.. .
T Consensus       157 ~~~----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-~  230 (291)
T 3mkr_A          157 QDQ----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDK-D  230 (291)
T ss_dssp             HHH----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred             Hhh----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence            998    554443333333  3333458999999999999999885 8999999999999999999999999999988 8


Q ss_pred             CCcHHHHHHHHHHHHHhhcHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632          311 TDNGYLYLKLAECYLSLKERAH-AIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS  372 (687)
Q Consensus       311 ~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  372 (687)
                      |+++.++.++|.++...|++.+ +..+++++++.+|+++.+.    .+..+.+.++++..-|.
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~~  289 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQYA  289 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHcC
Confidence            9999999999999999999976 5789999999999998765    45667778888876664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.93  E-value=1.4e-24  Score=209.94  Aligned_cols=260  Identities=12%  Similarity=-0.042  Sum_probs=184.6

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD----ISLRIHL  142 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l  142 (687)
                      +++.++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+    ..++..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            3567788888888888888888888888888888888888888888888888888888888888 3333    3447888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY  222 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~  222 (687)
                      |.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.+..  ++..+|......+++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK--VFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH--HHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH--HHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888777664  677777444445578


Q ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHH
Q 005632          223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN---MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL  299 (687)
Q Consensus       223 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  299 (687)
                      ++|+..++++++.    .|....++..+|.++...|+   +++|+..+++++..... .+..                  
T Consensus       159 ~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~------------------  215 (272)
T 3u4t_A          159 VKADSSFVKVLEL----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-GGAK------------------  215 (272)
T ss_dssp             HHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-GGGG------------------
T ss_pred             HHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-cccc------------------
Confidence            8888888887777    55556666666766666666   55666666665543211 0000                  


Q ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 005632          300 KYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE  361 (687)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  361 (687)
                               ..+....++..+|.++...|++++|+.+|+++++++|+++.++-.++.+....
T Consensus       216 ---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          216 ---------YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             ---------GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred             ---------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence                     00002246667777777778888888888888888887777777776655443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=224.02  Aligned_cols=304  Identities=16%  Similarity=0.126  Sum_probs=200.8

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCC
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPK  100 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~  100 (687)
                      ......++..|..++..|++++|+..|++++...|.++    .++..+|.++...|++++|+.++++++.+      .|.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            45667788889999999999999999999999888874    57888889999999999999988888766      344


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHH
Q 005632          101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGD--------------------YEK  154 (687)
Q Consensus       101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~  154 (687)
                      ...++..+|.++...|++++|+.++++++...|..      ..++..+|.++...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            46677788888888888888888888887765432      3467777777777777                    777


Q ss_pred             HHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHH
Q 005632          155 AAESYEQIQKLF------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEK  224 (687)
Q Consensus       155 A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~  224 (687)
                      |+..+.+++...      |....++..+|.++...|++++|+..+++++...|....    ..++..+|.++...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            777776666541      122344555555555566666666655555554433222    1134455555555555555


Q ss_pred             HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632          225 TLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF  304 (687)
Q Consensus       225 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  304 (687)
                      |+.++++++...+...                                 .+.....++..+|.++...|++++|+.++++
T Consensus       246 A~~~~~~al~~~~~~~---------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  292 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLK---------------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK  292 (406)
T ss_dssp             HHHHHHHHHHHHHHTT---------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc---------------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            5555555554421110                                 0111245556666666666666666666666


Q ss_pred             hhhcc-----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHH
Q 005632          305 LETNA-----GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE------DNIDARLTLASLLLEEAKEEEA  367 (687)
Q Consensus       305 ~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A  367 (687)
                      ++...     .+....++..+|.++...|++++|+.++++++++.+      ....++..++.++...|+...+
T Consensus       293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  366 (406)
T 3sf4_A          293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST  366 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence            55441     111256777888888888888888888888887743      2356777788888888876443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.93  E-value=7.2e-25  Score=226.82  Aligned_cols=347  Identities=14%  Similarity=0.090  Sum_probs=268.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh---HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH---KSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      +..|..++..|++++|+..|+++.+.  +++.+++.+|.+|...|++   ++|+.+|+++++.   ++.+++.+|.++..
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence            45688999999999999999999876  5788999999999999999   9999999999976   77889999997777


Q ss_pred             cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 005632          115 KG-----DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA---AESYEQIQKLFPDNVDATKTGAQLFLKCGQT  186 (687)
Q Consensus       115 ~g-----~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~  186 (687)
                      .+     ++++|+.+|++++..  .++.+++.+|.+|...+...++   .+.+.++..  +.++.+++.+|.+|...+.+
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTY  157 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCG
T ss_pred             CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCc
Confidence            76     889999999999985  4555899999999988765544   444444443  34678999999999999987


Q ss_pred             HHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHcc---hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc----C
Q 005632          187 ARSIGILEEYLKV-HPSDADLSVIDLLVAILMENN---AYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL----G  258 (687)
Q Consensus       187 ~~A~~~~~~~~~~-~p~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~  258 (687)
                      +++.......... ...++.  +++.+|.++...|   ++++|+.+|+++...    .+.....++.+|.+|...    +
T Consensus       158 ~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~~a~~~~~Lg~~y~~g~~~~~  231 (452)
T 3e4b_A          158 DQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTVTAQRVDSVARVLGDATLGTP  231 (452)
T ss_dssp             GGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCSCHHHHHHHHHHHTCGGGSSC
T ss_pred             ccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHhCCCCCCC
Confidence            7777664444433 223333  7889999999999   999999999999998    777777789999999766    7


Q ss_pred             CHHHHHHHHHHHhhhCchhhHHHHHHHHHH-H--HhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhh-----cH
Q 005632          259 NMEKAEILFADLQWKNAIDHADLITEVADT-L--MSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLK-----ER  330 (687)
Q Consensus       259 ~~~~A~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~  330 (687)
                      ++++|+.+|+++.   + .++.+++.+|.+ +  ...+++++|+.+|+++...   .++.+++.+|.+|. .|     ++
T Consensus       232 d~~~A~~~~~~aa---~-g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~---g~~~A~~~Lg~~y~-~G~g~~~d~  303 (452)
T 3e4b_A          232 DEKTAQALLEKIA---P-GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA---DQPRAELLLGKLYY-EGKWVPADA  303 (452)
T ss_dssp             CHHHHHHHHHHHG---G-GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH-HCSSSCCCH
T ss_pred             CHHHHHHHHHHHc---C-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHH-cCCCCCCCH
Confidence            9999999999987   4 489999999998 4  5789999999999998854   58899999999998 66     99


Q ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHH
Q 005632          331 AHAIMFFYKALDRFEDNIDARLTLASLLLE----EAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA  406 (687)
Q Consensus       331 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  406 (687)
                      ++|+.+|+++.   |+++.+.+.||.+|..    ..++++|+.+|+++.+...  +            .+.+.+|.+|..
T Consensus       304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~------------~A~~~Lg~~y~~  366 (452)
T 3e4b_A          304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--N------------SADFAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--T------------THHHHHHHHHHS
T ss_pred             HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--H------------HHHHHHHHHHHh
Confidence            99999999998   8999999999999987    3499999999999887543  2            388999999974


Q ss_pred             ----cCCchHHHHHHHHHHHHh
Q 005632          407 ----KGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       407 ----~g~~~~A~~~~~~~~~~~  424 (687)
                          ..++.+|..+|....+..
T Consensus       367 G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          367 GKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             CTTBCCCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC
Confidence                458899999999988654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.8e-24  Score=222.50  Aligned_cols=321  Identities=13%  Similarity=0.101  Sum_probs=195.5

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKDIS  137 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~  137 (687)
                      ...++.+|.++...|++++|+.+|++++...|.++    .++..+|.++...|++++|+.++++++...      |....
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            34455556666666666666666666665555542    345555555555555555555555555431      22233


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHH
Q 005632          138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLV  213 (687)
Q Consensus       138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la  213 (687)
                      ++..+|.++...|++++|+..+++++...                                  |....    ..++..+|
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~~~~~~~l~  134 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDIS----------------------------------RELNDKVGEARALYNLG  134 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------------HHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------------HhcccccchHHHHHHHH
Confidence            44445555555555555555555544443                                  32211    12455566


Q ss_pred             HHHHHcch--------------------HHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          214 AILMENNA--------------------YEKTLQHIEHAQIVRFS--GKELPLKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       214 ~~~~~~~~--------------------~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      .++...|+                    +++|+..+++++.....  +.+....++..+|.++...|++++|+..+++++
T Consensus       135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  214 (406)
T 3sf4_A          135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL  214 (406)
T ss_dssp             HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred             HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            66666666                    66666666666655321  123344567777777777777777777777766


Q ss_pred             hhCch-----hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC------cHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 005632          272 WKNAI-----DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD------NGYLYLKLAECYLSLKERAHAIMFFYKA  340 (687)
Q Consensus       272 ~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a  340 (687)
                      ...+.     ....++..+|.++...|++++|+.++++++.. .+.      ...++..+|.++...|++++|+.+|+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            54332     23447788888888888888888888887765 222      2678899999999999999999999999


Q ss_pred             HHhcCCC------HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCC-CCCChhhhhHHHHHHHHHHHHHcCCchHH
Q 005632          341 LDRFEDN------IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNS-DKSNPWWLNEKIIMKLCHIYRAKGMPEDF  413 (687)
Q Consensus       341 l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A  413 (687)
                      ++..+..      ..++..+|.++...|++++|+.+++++++..+..... .....+..-..++..+|..+.......++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~  373 (406)
T 3sf4_A          294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE  373 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence            9986644      6788999999999999999999999988764433221 11223344557888999887777777777


Q ss_pred             HHHHHHHHHH
Q 005632          414 VDAIFPLVCE  423 (687)
Q Consensus       414 ~~~~~~~~~~  423 (687)
                      ...+...++.
T Consensus       374 ~~~~~~~l~~  383 (406)
T 3sf4_A          374 NTEIDSSLNG  383 (406)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHh
Confidence            7776666544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=3.8e-23  Score=212.95  Aligned_cols=283  Identities=15%  Similarity=0.106  Sum_probs=192.5

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCC
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP----ETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPK  100 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~  100 (687)
                      +.....++..|..++..|++++|+..|+++++..|+++    .++..+|.++...|++++|+.+|++++..      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            35566777888999999999999999999999888876    47888899999999999999999888877      466


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 005632          101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISLRIHLASFYVEIGD-----------------YEKAAE  157 (687)
Q Consensus       101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~  157 (687)
                      ...++..+|.++...|++++|+.++++++..      .|....++..+|.++...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            6777888888888888888888888888876      34455677888888888888                 778887


Q ss_pred             HHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHH
Q 005632          158 SYEQIQKLFP------DNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQ  227 (687)
Q Consensus       158 ~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~  227 (687)
                      ++++++++.+      ....++..+|.++...|++++|+.++++++...+....    ..++..+|.++...|++++|+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            7777776532      22346667777777777777777777777666544322    1245566666666666666666


Q ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 005632          228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET  307 (687)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  307 (687)
                      ++++++...+.....                                 .....++..+|.++...|++++|+.++++++.
T Consensus       285 ~~~~al~~~~~~~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  331 (411)
T 4a1s_A          285 HYKRTLALAVELGER---------------------------------EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA  331 (411)
T ss_dssp             HHHHHHHHHHHTTCH---------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCH---------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666666653211110                                 01233444455555555555555555554443


Q ss_pred             cc-----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632          308 NA-----GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED  346 (687)
Q Consensus       308 ~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  346 (687)
                      ..     .+....++..+|.++...|++++|..+|++++++.+.
T Consensus       332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            21     1123456666777777777777777777777766653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.91  E-value=1.5e-23  Score=217.04  Aligned_cols=317  Identities=15%  Similarity=0.121  Sum_probs=233.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT---AQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..+|..++..|++++|+..|+++.+.  +++.+++.+|.++...|++   ++|+.+|+++++.   ++.+++.+|.++..
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence            45789999999999999999999765  5678899999999999998   9999999999976   77889999997777


Q ss_pred             cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcchH
Q 005632          149 IG-----DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH-PSDADLSVIDLLVAILMENNAY  222 (687)
Q Consensus       149 ~g-----~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~la~~~~~~~~~  222 (687)
                      .+     ++++|+.+|+++++.  .++.+++.+|.+|...+..+++...++...... +.++.  +++.+|.+|...+.+
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~--a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPE--AGLAQVLLYRTQGTY  157 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTT--HHHHHHHHHHHHTCG
T ss_pred             CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHH--HHHHHHHHHHcCCCc
Confidence            66     889999999999985  455689999999998877655544443333322 22333  688999999999866


Q ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhc----CCh
Q 005632          223 EKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG---NMEKAEILFADLQWKNAIDHADLITEVADTLMSL----GHS  295 (687)
Q Consensus       223 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~  295 (687)
                      +++............   ...+.+++.+|.++...|   ++++|+..|+++....+. ....++.+|.+|...    +++
T Consensus       158 ~~~~~~a~~~~~~a~---~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          158 DQHLDDVERICKAAL---NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             GGGHHHHHHHHHHHT---TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred             ccCHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence            655555444333322   122338899999999999   999999999999988775 777779999999766    799


Q ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHH-H--HHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHH
Q 005632          296 NSALKYYHFLETNAGTDNGYLYLKLAEC-Y--LSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA-----KEEEA  367 (687)
Q Consensus       296 ~~A~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A  367 (687)
                      ++|+.+|+++.    |+++.+++.+|.+ +  ...+++++|+.+|+++.+.  +++.+++.+|.+|. .|     ++++|
T Consensus       234 ~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          234 KTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            99999999987    6788999999998 4  5788999999999999864  58999999999998 66     99999


Q ss_pred             HHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHH----cCCchHHHHHHHHHHHH
Q 005632          368 ITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRA----KGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       368 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~  423 (687)
                      +.+|+++.   +.++            .+++.+|.+|..    ..++++|+.+|++..+.
T Consensus       307 ~~~~~~Aa---~g~~------------~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          307 EAHFEKAV---GREV------------AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             HHHHHTTT---TTCH------------HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHh---CCCH------------HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            99999998   4433            599999999976    33888898888877643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.91  E-value=3.9e-23  Score=195.90  Aligned_cols=220  Identities=14%  Similarity=0.090  Sum_probs=181.6

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      ......++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   99 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN   99 (243)
T ss_dssp             ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  190 (687)
                      ++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 005632          191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR  256 (687)
Q Consensus       191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  256 (687)
                      ..+++++...|.+..  ++..+|.++...|++++|+..+++++..    .|....++..++.+...
T Consensus       180 ~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          180 SQFAAVTEQDPGHAD--AFYNAGVTYAYKENREKALEMLDKAIDI----QPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHHHHHCTTCHH--HHHHHHHHHHHTTCTTHHHHHHHHHHHH----CTTCHHHHHHHTC----
T ss_pred             HHHHHHHHhCcccHH--HHHHHHHHHHHccCHHHHHHHHHHHHcc----CcchHHHHHHHHHHHhh
Confidence            999999999998765  7889999999999999999999999998    67777777666655443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.91  E-value=2.7e-23  Score=214.11  Aligned_cols=283  Identities=15%  Similarity=0.116  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS----ALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISL  138 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~  138 (687)
                      ..++.+|..+...|++++|+..|++++...|+++    .++..+|.++...|++++|+.++++++..      .|....+
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            3445555555555555555555555555555544    34555555555555555555555555544      2333344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632          139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME  218 (687)
Q Consensus       139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~  218 (687)
                      +..+|.++...|++++|+..|++++...+...              +              .|.  ...++..+|.++..
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~--------------~~~--~~~~~~~l~~~~~~  178 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLG--------------D--------------RLS--EGRALYNLGNVYHA  178 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------C--------------HHH--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--------------c--------------hHH--HHHHHHHHHHHHHH
Confidence            44455555555555555555554444311000              0              111  11245556666666


Q ss_pred             cch-----------------HHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch---
Q 005632          219 NNA-----------------YEKTLQHIEHAQIVRF--SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI---  276 (687)
Q Consensus       219 ~~~-----------------~~~A~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---  276 (687)
                      .|+                 +++|+.++++++....  .+.+....++..+|.++...|++++|+.++++++...+.   
T Consensus       179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (411)
T 4a1s_A          179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD  258 (411)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence            666                 6666666666665432  112334456777777777777777777777777665432   


Q ss_pred             --hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC--C---CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC--
Q 005632          277 --DHADLITEVADTLMSLGHSNSALKYYHFLETNAG--T---DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN--  347 (687)
Q Consensus       277 --~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  347 (687)
                        ....++..+|.++...|++++|+.++++++....  .   ....++..+|.++...|++++|+.++++++...+..  
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  338 (411)
T 4a1s_A          259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD  338 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence              1234788889999999999999999988876521  1   236788999999999999999999999999986533  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCccc
Q 005632          348 ----IDARLTLASLLLEEAKEEEAITLLSPPKDLDSLD  381 (687)
Q Consensus       348 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  381 (687)
                          ..++..+|.++...|++++|+.++++++...+..
T Consensus       339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence                5688899999999999999999999999987764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.91  E-value=6.5e-23  Score=204.78  Aligned_cols=281  Identities=15%  Similarity=0.121  Sum_probs=182.3

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCChHHHHHHHHHHhcc------CCCCH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL----PETYNTLGLAHSALGNHKSAFDFYVIAAHL------SPKDS  102 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~  102 (687)
                      +...++..|..++..|++++|+..|+++++..|++    ..++..+|.++...|++++|+.++++++..      .|...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            45677888999999999999999999999998887    467888899999999999999999888776      34456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHH
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGD--------------------YEKAA  156 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~  156 (687)
                      .++..+|.++...|++++|+..+++++...|..      ..++..+|.++...|+                    +++|+
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            677888888888888888888888887765432      2367777778877777                    77777


Q ss_pred             HHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHH
Q 005632          157 ESYEQIQKLF------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTL  226 (687)
Q Consensus       157 ~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~  226 (687)
                      ..+++++...      +....++..+|.++...|++++|+..+++++...+....    ..++..+|.++...|++++|+
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  243 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7777766542      122345556666666666666666666666554332221    123445555555555555555


Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 005632          227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLE  306 (687)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  306 (687)
                      .++++++...+....                                 +.....++..+|.++...|++++|+.++++++
T Consensus       244 ~~~~~al~~~~~~~~---------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          244 EYYKKTLLLARQLKD---------------------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHHHHHHHHHTTC---------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcc---------------------------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            555555544221100                                 11124445555666666666666666665554


Q ss_pred             hcc-----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632          307 TNA-----GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED  346 (687)
Q Consensus       307 ~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  346 (687)
                      ...     .+....++..+|.++...|++++|..++++++++.+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            431     1112446667777777777777777777777776554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.91  E-value=3.7e-23  Score=200.18  Aligned_cols=250  Identities=11%  Similarity=0.027  Sum_probs=168.7

Q ss_pred             HhcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           45 YAYGNFEQAISLLKEVVRLS----PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      ...|++++|+..|+++++..    |.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            34577888888888887763    44567778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      |+.+|++++..+|.++.++..+|.++...|++++|+..|+++++..|+++.....++.. ...|++++|+..+++++...
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcC
Confidence            88888888888887777888888888888888888888888888887777655544433 55577777777777777777


Q ss_pred             CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHH
Q 005632          201 PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHAD  280 (687)
Q Consensus       201 p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  280 (687)
                      |.+..   ...++.++...++.++|+..+.+++...+...                                   +..+.
T Consensus       175 ~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------------------------~~~~~  216 (275)
T 1xnf_A          175 DKEQW---GWNIVEFYLGNISEQTLMERLKADATDNTSLA-----------------------------------EHLSE  216 (275)
T ss_dssp             CCCST---HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-----------------------------------HHHHH
T ss_pred             CcchH---HHHHHHHHHHhcCHHHHHHHHHHHhccccccc-----------------------------------ccccH
Confidence            76653   23466666666666777777666654411101                                   11345


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHH
Q 005632          281 LITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFF  337 (687)
Q Consensus       281 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  337 (687)
                      .+..+|.++...|++++|+..|++++.. .|.+..   ..+.++...|++++|++.|
T Consensus       217 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~---~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          217 TNFYLGKYYLSLGDLDSATALFKLAVAN-NVHNFV---EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCTTCH---HHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CchhHH---HHHHHHHHHHHHHhhHHHH
Confidence            5566666666666666666666666654 343322   2245556666666666655

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.90  E-value=2.4e-22  Score=181.29  Aligned_cols=171  Identities=19%  Similarity=0.215  Sum_probs=143.6

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      ++..++..|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            44556777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      ...++++.|...+.+++..+|.+..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCCC
Q 005632          193 LEEYLKVHPSD  203 (687)
Q Consensus       193 ~~~~~~~~p~~  203 (687)
                      |+++++.+|++
T Consensus       164 ~~~al~~~p~~  174 (184)
T 3vtx_A          164 FKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHTTHHH
T ss_pred             HHHHHhCCccC
Confidence            88888887764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.90  E-value=1.8e-22  Score=201.60  Aligned_cols=276  Identities=15%  Similarity=0.126  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI----SLRIHLASFYVEIGDYEKAAESYEQIQKL------FPDNVDATK  174 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~  174 (687)
                      +...|..+...|++++|+..|+++++..|+++    .++..+|.++...|++++|+..+++++..      .|....++.
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   87 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            44445555555555555555555555555552    34555555555555555555555555544      222345566


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcch--------------------HHHHHHHHH
Q 005632          175 TGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNA--------------------YEKTLQHIE  230 (687)
Q Consensus       175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~--------------------~~~A~~~~~  230 (687)
                      .+|.++...|++++|+..+++++...+....    ..++..+|.++...|+                    +++|+..++
T Consensus        88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  167 (338)
T 3ro2_A           88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE  167 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            6666666666666666666666665443322    2356677777777777                    788888887


Q ss_pred             HHHHHhc--cCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-----hhHHHHHHHHHHHHhcCChHHHHHHHH
Q 005632          231 HAQIVRF--SGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALKYYH  303 (687)
Q Consensus       231 ~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~  303 (687)
                      +++....  .+.+....++..+|.++...|++++|+..+++++...+.     ....++..+|.++...|++++|+..++
T Consensus       168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7776532  122334567778888888888888888888887764332     234478899999999999999999999


Q ss_pred             HhhhccC--C---CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632          304 FLETNAG--T---DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN------IDARLTLASLLLEEAKEEEAITLLS  372 (687)
Q Consensus       304 ~~~~~~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~  372 (687)
                      +++....  +   ....++..+|.++...|++++|+.+++++++..+..      ..++..+|.++...|++++|..+++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            8876521  1   126788999999999999999999999999886543      5588899999999999999999999


Q ss_pred             CCCcCCcc
Q 005632          373 PPKDLDSL  380 (687)
Q Consensus       373 ~a~~~~~~  380 (687)
                      ++++..+.
T Consensus       328 ~a~~~~~~  335 (338)
T 3ro2_A          328 KHLEISRE  335 (338)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHHh
Confidence            88877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.90  E-value=3.2e-20  Score=202.63  Aligned_cols=326  Identities=14%  Similarity=0.095  Sum_probs=266.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632           40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA  119 (687)
Q Consensus        40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  119 (687)
                      .|..+...|.+++|..+|+++-    ....+   +...+...|++++|.++++++     +.+.+|+.+|.++...|+++
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence            3899999999999999999972    11111   233344889999999999876     56899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632          120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  199 (687)
                      +|+..|.++     +++..+..++.++...|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.|.    .
T Consensus      1123 EAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~ 1191 (1630)
T 1xi4_A         1123 EAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----N 1191 (1630)
T ss_pred             HHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----h
Confidence            999999886     78999999999999999999999999999998744 3334469999999999885 44332    2


Q ss_pred             CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhH
Q 005632          200 HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHA  279 (687)
Q Consensus       200 ~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  279 (687)
                      .+...   .+..+|..+...|+|++|..+|.++-            .|..++.++.+.|++++|++.++++      .+.
T Consensus      1192 ~~n~a---d~~~iGd~le~eg~YeeA~~~Y~kA~------------ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A         1192 GPNNA---HIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred             CCCHH---HHHHHHHHHHhcCCHHHHHHHHHhhh------------HHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence            33332   56789999999999999999999962            4788999999999999999999998      367


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 005632          280 DLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLL  359 (687)
Q Consensus       280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  359 (687)
                      .+|...+.++...|++..|..+...+     ..+++.+..++..|...|.+++|+.++++++.++|.+...+..++.++.
T Consensus      1251 ~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A         1251 RTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence            89999999999999999999988542     3356667789999999999999999999999999999999988888877


Q ss_pred             Hc--CCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 005632          360 EE--AKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLV  421 (687)
Q Consensus       360 ~~--g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  421 (687)
                      +-  ++..+++++|....+..+.-.       +-.....|..+..+|.+-|+++.|+..+..-.
T Consensus      1326 Ky~peklmEhlk~f~~rini~k~~r-------~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A         1326 KFKPQKMREHLELFWSRVNIPKVLR-------AAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred             hCCHHHHHHHHHHHHHhcccchHhH-------HHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence            64  678899999988777655211       11133578899999999999999976554433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=5.4e-22  Score=191.94  Aligned_cols=251  Identities=13%  Similarity=0.047  Sum_probs=186.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHhccC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632           75 GLAHSALGNHKSAFDFYVIAAHLS----PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus        75 ~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      +......|++++|+..|++++...    |.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence            333445678888999998888863    4567788888888888899999999998888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHH
Q 005632          151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIE  230 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~  230 (687)
                      ++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|++..  .. ....+....|++++|+..+.
T Consensus        92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~-~~~~~~~~~~~~~~A~~~~~  168 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--RS-LWLYLAEQKLDEKQAKEVLK  168 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HH-HHHHHHHHHHCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH--HH-HHHHHHHHhcCHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888763  22 22233455577777777777


Q ss_pred             HHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc-
Q 005632          231 HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA-  309 (687)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-  309 (687)
                      +++..    .+..... ..+                                   +.++...++.++|+..+++++... 
T Consensus       169 ~~~~~----~~~~~~~-~~~-----------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~  208 (275)
T 1xnf_A          169 QHFEK----SDKEQWG-WNI-----------------------------------VEFYLGNISEQTLMERLKADATDNT  208 (275)
T ss_dssp             HHHHH----SCCCSTH-HHH-----------------------------------HHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred             HHHhc----CCcchHH-HHH-----------------------------------HHHHHHhcCHHHHHHHHHHHhcccc
Confidence            77666    2222111 123                                   333444444455555555444331 


Q ss_pred             --CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhc
Q 005632          310 --GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLL  371 (687)
Q Consensus       310 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  371 (687)
                        .|.++.++..+|.++...|++++|+..|+++++.+|++...   .+.++...|++++|++.+
T Consensus       209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence              12346789999999999999999999999999999977543   377888999999999887

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=1.8e-21  Score=185.65  Aligned_cols=200  Identities=13%  Similarity=0.073  Sum_probs=186.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIR--AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG  191 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  191 (687)
                      ..|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999  7888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          192 ILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       192 ~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      .+++++...|.+..  ++..++.++...|++++|..++++++..
T Consensus       197 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          197 YYDLFAQGGGQNAR--SLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHTTSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999887765  6888999999999999999999999988

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.90  E-value=3.7e-22  Score=189.20  Aligned_cols=217  Identities=13%  Similarity=0.084  Sum_probs=161.6

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      .+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            45678888999999999999999999999988988889999999999999999999999999998888888889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHH
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL  226 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~  226 (687)
                      ...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..  ++..+|.++...|++++|+
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE--ARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCCHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH--HHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999988888888888888888889999999888888888887664  6778888888888888888


Q ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632          227 QHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM  290 (687)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  290 (687)
                      ..+++++..    .+....++..+|.++...|++++|+..+++++...|. ++.++..++.+..
T Consensus       180 ~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l~~  238 (243)
T 2q7f_A          180 SQFAAVTEQ----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHH----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHHHTC---
T ss_pred             HHHHHHHHh----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHHHHHHHh
Confidence            888888877    5556667777777777777777777777777776664 5555555554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.90  E-value=4.4e-21  Score=179.24  Aligned_cols=203  Identities=14%  Similarity=0.068  Sum_probs=168.5

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      |.++..++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            45666777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632          111 FAVQK-GDTAQAMYYIRQAIR--AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA  187 (687)
Q Consensus       111 ~~~~~-g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  187 (687)
                      ++... |++++|+..+++++.  ..|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            88888 888888888888888  556667888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          188 RSIGILEEYLKVHP-SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       188 ~A~~~~~~~~~~~p-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      +|+..+++++...| .+..  .+..++.++...|++++|..+++.+...
T Consensus       165 ~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQAD--DLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            88888888888888 6554  5667777778888888888888887766

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.89  E-value=1.2e-21  Score=176.67  Aligned_cols=168  Identities=13%  Similarity=0.122  Sum_probs=157.6

Q ss_pred             CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632           66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus        66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      +++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632          146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT  225 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A  225 (687)
                      +...++++.|...+.+++...|.++.++..+|.++...|++++|+..|+++++.+|.+..  ++..+|.++...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR--AYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh--HHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999998875  788999999999999999


Q ss_pred             HHHHHHHHHH
Q 005632          226 LQHIEHAQIV  235 (687)
Q Consensus       226 ~~~~~~~~~~  235 (687)
                      +..|+++++.
T Consensus       161 ~~~~~~al~~  170 (184)
T 3vtx_A          161 VKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999999988

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.89  E-value=1.5e-20  Score=181.44  Aligned_cols=230  Identities=13%  Similarity=0.076  Sum_probs=130.6

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAMYYIRQAIRAEPKDISLRI  140 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~  140 (687)
                      |+++.+++.+|.++...|++++|+.+|+++++  |+++.++..+|.++..    .+++++|+.+|+++++.+  ++.+++
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~   78 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH   78 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            45555666666666666666666666666655  4555556666666665    666666666666655543  455555


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHH
Q 005632          141 HLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLL  212 (687)
Q Consensus       141 ~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l  212 (687)
                      .+|.++..    .+++++|+..|+++++.  +++.++..+|.+|..    .+++++|+.+|+++++..+    ..++..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND----GDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----HHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc----HHHHHHH
Confidence            55555555    55555555555555554  245555555555555    5555555555555555431    1234455


Q ss_pred             HHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHH
Q 005632          213 VAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT  288 (687)
Q Consensus       213 a~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~  288 (687)
                      |.++..    .+++++|+.+|+++++                                      ..   .+.++..+|.+
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~--------------------------------------~~---~~~a~~~lg~~  191 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACD--------------------------------------LK---DSPGCFNAGNM  191 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHH--------------------------------------TT---CHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHH--------------------------------------CC---CHHHHHHHHHH
Confidence            555554    4455555555544443                                      31   34555566666


Q ss_pred             HHh----cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhcCCCH
Q 005632          289 LMS----LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS----LKERAHAIMFFYKALDRFEDNI  348 (687)
Q Consensus       289 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~  348 (687)
                      +..    .+++++|+.+|++++.. .  .+.+++.+|.+|..    .+++++|+.+|+++++..|++.
T Consensus       192 ~~~g~~~~~~~~~A~~~~~~a~~~-~--~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          192 YHHGEGATKNFKEALARYSKACEL-E--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             HHHTCSSCCCHHHHHHHHHHHHHT-T--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHhC-C--CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            666    66666666666666644 2  25566667777766    6677777777777777666543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.89  E-value=1.7e-20  Score=181.05  Aligned_cols=228  Identities=16%  Similarity=0.107  Sum_probs=207.4

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHhccCCCCHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA----LGNHKSAFDFYVIAAHLSPKDSALWK  106 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~  106 (687)
                      +.+...++..|..++..|++++|+.+|+++++  |+++.+++.+|.++..    .+++++|+.+|+++++.+  ++.++.
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~   78 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCH   78 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            34567788999999999999999999999998  7889999999999999    999999999999999875  789999


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632          107 QLLTFAVQ----KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGAQ  178 (687)
Q Consensus       107 ~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  178 (687)
                      .+|.++..    .+++++|+.+|+++++.  +++.++..+|.+|..    .+++++|+.+|+++++..  ++.++..+|.
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~  154 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence            99999999    99999999999999987  489999999999999    999999999999999975  6889999999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHH
Q 005632          179 LFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKA  250 (687)
Q Consensus       179 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  250 (687)
                      ++..    .+++++|+..|+++++..+    ..++..+|.++..    .+++++|+.+++++++.    .+  ..++..+
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~--~~a~~~l  224 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----EN--GGGCFNL  224 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----TC--HHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC----CC--HHHHHHH
Confidence            9999    9999999999999998743    2478899999999    99999999999999987    33  6778889


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHhhhCch
Q 005632          251 GICYLR----LGNMEKAEILFADLQWKNAI  276 (687)
Q Consensus       251 ~~~~~~----~~~~~~A~~~~~~~~~~~~~  276 (687)
                      |.++..    .+++++|+.+|++++...|.
T Consensus       225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence            999998    89999999999998887664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.89  E-value=2.7e-21  Score=196.76  Aligned_cols=312  Identities=11%  Similarity=0.028  Sum_probs=242.9

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CchHHH--HHH--HHHHHHcCChHHHH-----------HHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP---NLPETY--NTL--GLAHSALGNHKSAF-----------DFYV   92 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~--~~l--~~~~~~~g~~~~A~-----------~~~~   92 (687)
                      +..+...+.....+...+++++|..+++++.+.-+   .+...+  +.+  .......+++..+.           +.++
T Consensus         9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~   88 (383)
T 3ulq_A            9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLL   88 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHH
Confidence            34688899999999999999999999999866432   244433  222  22222334444444           5555


Q ss_pred             HHhccCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632           93 IAAHLSPKDSA------LWKQLLTFAVQKGDTAQAMYYIRQAIRA---EPK---DISLRIHLASFYVEIGDYEKAAESYE  160 (687)
Q Consensus        93 ~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~  160 (687)
                      ++-. .|....      .++.+|.++...|++++|+.+|++++..   .++   ...++..+|.++...|++++|+.+++
T Consensus        89 ~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~  167 (383)
T 3ulq_A           89 EIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYAR  167 (383)
T ss_dssp             HHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5432 232222      3445899999999999999999999986   233   35789999999999999999999999


Q ss_pred             HHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHH
Q 005632          161 QIQKLFPDN-------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHI  229 (687)
Q Consensus       161 ~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~  229 (687)
                      +++++.+..       ..++..+|.++...|++++|+..++++++..+...+    ..++..+|.++...|++++|+.++
T Consensus       168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  247 (383)
T 3ulq_A          168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF  247 (383)
T ss_dssp             HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999885433       457889999999999999999999999988654432    236889999999999999999999


Q ss_pred             HHHHHHhcc-CC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc----hhhHHHHHHHHHHHHhcCC---hHHHHH
Q 005632          230 EHAQIVRFS-GK-ELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA----IDHADLITEVADTLMSLGH---SNSALK  300 (687)
Q Consensus       230 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~  300 (687)
                      ++++..... .. +....++..+|.++...|++++|+.++++++...+    +.....+..++.++...|+   +.+|+.
T Consensus       248 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~  327 (383)
T 3ulq_A          248 KRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFD  327 (383)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            999986432 13 66788899999999999999999999999876532    1233346779999999999   888888


Q ss_pred             HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 005632          301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE  345 (687)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  345 (687)
                      .+++..  ..+....++..+|.+|...|++++|..+|++++++..
T Consensus       328 ~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          328 FLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            888763  2456677888999999999999999999999998754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.89  E-value=7.1e-21  Score=177.86  Aligned_cols=212  Identities=16%  Similarity=0.061  Sum_probs=167.0

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      ..|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 005632          143 ASFYVEI-GDYEKAAESYEQIQK--LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN  219 (687)
Q Consensus       143 a~~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~  219 (687)
                      |.++... |++++|+..++++++  ..|.+..++..+|.++...|++++|+..++++++..|.+..  ++..+|.++...
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~  160 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP--AFKELARTKMLA  160 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch--HHHHHHHHHHHc
Confidence            8888888 888888888888888  55666778888888888888888888888888888877654  677888888888


Q ss_pred             chHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632          220 NAYEKTLQHIEHAQIVRFSGKE-LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL  281 (687)
Q Consensus       220 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  281 (687)
                      |++++|+..+++++..    .| .....+..++.++...|+.++|..+++.+....|. ++.+
T Consensus       161 ~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~  218 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSR----VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY-SEEL  218 (225)
T ss_dssp             TCHHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             CCHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHH
Confidence            8888888888888777    44 55556666777777777777777777777666553 4443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.89  E-value=3.7e-21  Score=183.42  Aligned_cols=212  Identities=14%  Similarity=0.107  Sum_probs=172.2

Q ss_pred             hCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632           63 LSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH  141 (687)
Q Consensus        63 ~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  141 (687)
                      .+|.+ +.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  110 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN  110 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence            34554 67788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 005632          142 LASFYVEIGDYEKAAESYEQIQK--LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN  219 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~  219 (687)
                      +|.++...|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..+++++...|.+..  ++..+|.++...
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~  188 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS--VALEMADLLYKE  188 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHT
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHc
Confidence            88888888888888888888888  77777888888888888888888888888888888887654  677888888888


Q ss_pred             chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHH
Q 005632          220 NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADL  281 (687)
Q Consensus       220 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  281 (687)
                      |++++|+..+++++..    .+.....+..++.++...|++++|...+++++...|. ++..
T Consensus       189 g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~  245 (252)
T 2ho1_A          189 REYVPARQYYDLFAQG----GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG-SLEY  245 (252)
T ss_dssp             TCHHHHHHHHHHHHTT----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-SHHH
T ss_pred             CCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-CHHH
Confidence            8888888888888776    5566667777777777888888888888777776664 4433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=5.1e-22  Score=206.80  Aligned_cols=216  Identities=11%  Similarity=0.014  Sum_probs=167.2

Q ss_pred             CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632           82 GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT-AQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE  160 (687)
Q Consensus        82 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  160 (687)
                      +.+++++..+.......|.+..+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3466777777777777777777777777777777777 778777877777777777777777877777788888888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc--------chHH
Q 005632          161 QIQKLFPDNVDATKTGAQLFLKC---------GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN--------NAYE  223 (687)
Q Consensus       161 ~~~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~--------~~~~  223 (687)
                      ++++.+|+ ..++..+|.++...         |++++|+..|+++++.+|++..  ++..+|.++...        |+++
T Consensus       162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR--SWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHhhccccchHH
Confidence            87777777 57777777777777         7778888888888777777664  677777777777        7788


Q ss_pred             HHHHHHHHHHHHhccCCC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHH
Q 005632          224 KTLQHIEHAQIVRFSGKE---LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK  300 (687)
Q Consensus       224 ~A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  300 (687)
                      +|+..|++++..    .|   ....+++.+|.++...|++++|+..|++++...|. ++.++..++.++...|++++|+.
T Consensus       239 ~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          239 QALSAYAQAEKV----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHH----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888877    56   67777788888888888888888888887777774 77778888888888888888887


Q ss_pred             HHHHh
Q 005632          301 YYHFL  305 (687)
Q Consensus       301 ~~~~~  305 (687)
                      .+.++
T Consensus       314 ~~~~~  318 (474)
T 4abn_A          314 SKGKT  318 (474)
T ss_dssp             HTTTC
T ss_pred             Hhccc
Confidence            77654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.88  E-value=6.3e-19  Score=192.60  Aligned_cols=456  Identities=14%  Similarity=0.075  Sum_probs=309.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           40 EASLQYAYGNFEQAISLLKEVVRLSPN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      .+..+...|.+.+|+++|++++ ..|.    +......++.+..+. +..+..++..+.-..+      ...+|.++...
T Consensus       991 ~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai~l 1062 (1630)
T 1xi4_A          991 TVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAISN 1062 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHHhC
Confidence            3566779999999999999999 4444    444444455555544 3444444444432211      23489999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632          116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEE  195 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  195 (687)
                      |.+++|...|+++-    ....   .+...+...|++++|+++++++     +.+.+|+.+|..+...|++++|+..|.+
T Consensus      1063 glyEEAf~IYkKa~----~~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFD----VNTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             CCHHHHHHHHHHcC----CHHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            99999999999973    1111   2233345889999999999876     6689999999999999999999999987


Q ss_pred             HHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632          196 YLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       196 ~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  275 (687)
                      +     +++.  .+..++.++...|++++|+++|..+.+.    . ....+...+|.+|.+.+++++ +..|.   . .+
T Consensus      1131 A-----dD~s--ay~eVa~~~~~lGkyEEAIeyL~mArk~----~-~e~~Idt~LafaYAKl~rlee-le~fI---~-~~ 1193 (1630)
T 1xi4_A         1131 A-----DDPS--SYMEVVQAANTSGNWEELVKYLQMARKK----A-RESYVETELIFALAKTNRLAE-LEEFI---N-GP 1193 (1630)
T ss_pred             c-----CChH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh----c-ccccccHHHHHHHHhhcCHHH-HHHHH---h-CC
Confidence            5     4443  6889999999999999999999999887    2 122223359999999999885 44332   1 22


Q ss_pred             hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 005632          276 IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLA  355 (687)
Q Consensus       276 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  355 (687)
                        +...+..+|..+...|+|++|..+|.++         ..|..+|.++.++|++++|++.++++     .+..+|...+
T Consensus      1194 --n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~ 1257 (1630)
T 1xi4_A         1194 --NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVC 1257 (1630)
T ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHH
Confidence              3456668999999999999999999875         47889999999999999999999998     5679999999


Q ss_pred             HHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhh
Q 005632          356 SLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVK  435 (687)
Q Consensus       356 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  435 (687)
                      .++...|++..|..+... +...|               +.+..++..|...|.+++|+..++..+..- ..+...-.. 
T Consensus      1258 ~acve~~Ef~LA~~cgl~-Iiv~~---------------deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE- 1319 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLH-IVVHA---------------DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE- 1319 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHh-hhcCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH-
Confidence            999999999999998874 43344               366799999999999999999998876432 100000000 


Q ss_pred             hhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhh
Q 005632          436 VKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQ  515 (687)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  515 (687)
                                                  +..........+.              .|.+..+.                 
T Consensus      1320 ----------------------------LaiLyaKy~pekl--------------mEhlk~f~----------------- 1340 (1630)
T 1xi4_A         1320 ----------------------------LAILYSKFKPQKM--------------REHLELFW----------------- 1340 (1630)
T ss_pred             ----------------------------HHHHHHhCCHHHH--------------HHHHHHHH-----------------
Confidence                                        0000000000000              01111111                 


Q ss_pred             hhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc------cCchhhHHHHHHhhhhhhcccCCC
Q 005632          516 EAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYN------ILPLEKKEELRSLGAKMAYDSTDP  589 (687)
Q Consensus       516 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~  589 (687)
                         ...-++.++..-+...+...++.+|.+-|+++.|+...-........      .+.+..+.++.+-.+..++  ++.
T Consensus      1341 ---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~ 1415 (1630)
T 1xi4_A         1341 ---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFK 1415 (1630)
T ss_pred             ---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhC
Confidence               12223446677788888999999999999999997765444333111      0111223344444444333  666


Q ss_pred             cchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHH
Q 005632          590 NHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLR  638 (687)
Q Consensus       590 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  638 (687)
                      ..++..+..++...-+...+..+    +...++    ++-...|+..+.
T Consensus      1416 P~~lndLl~~l~~rlD~~R~V~l----~~~~~~----l~lik~yl~~vq 1456 (1630)
T 1xi4_A         1416 PLLLNDLLMVLSPRLDHTRAVNY----FSKVKQ----LPLVKPYLRSVQ 1456 (1630)
T ss_pred             hHHHHHHHHHhhhcCChHHHHHH----HHHcCC----hHHhHHHHHHHH
Confidence            67777777777655454444433    455555    444455555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=4.8e-21  Score=188.10  Aligned_cols=222  Identities=10%  Similarity=0.015  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHc
Q 005632           51 EQAISLLKEVVRLSPNLPETYNTLGLAHSA-------LGNH-------KSAFDFYVIAAH-LSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  115 (687)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            566666666666666666666666666553       3554       556666666665 4555555666666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHH
Q 005632          116 GDTAQAMYYIRQAIRAEPKDIS-LRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK-CGQTARSIGIL  193 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  193 (687)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..++...+.+... .|++++|+..|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6666666666666665555554 555555555555566666666666655555555555444443322 45555555555


Q ss_pred             HHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632          194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE-LPLKLKVKAGICYLRLGNMEKAEILFADLQW  272 (687)
Q Consensus       194 ~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  272 (687)
                      +++++.+|+++.  +|..++.++...|++++|...|++++...+ .+| ....++..++..+...|+++.|..++++++.
T Consensus       193 ~~al~~~p~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          193 ELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555555443  455555555555555555555555554300 011 2334444444444445555555555555444


Q ss_pred             hCc
Q 005632          273 KNA  275 (687)
Q Consensus       273 ~~~  275 (687)
                      ..|
T Consensus       270 ~~p  272 (308)
T 2ond_A          270 AFR  272 (308)
T ss_dssp             HTT
T ss_pred             Hcc
Confidence            444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=9.8e-21  Score=185.91  Aligned_cols=253  Identities=13%  Similarity=0.021  Sum_probs=218.4

Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 005632           85 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQ-------KGDT-------AQAMYYIRQAIR-AEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        85 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~  149 (687)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            578899999999999999999999999874       5886       999999999999 7999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-cchHHHHHH
Q 005632          150 GDYEKAAESYEQIQKLFPDNVD-ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME-NNAYEKTLQ  227 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~-~~~~~~A~~  227 (687)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.+..  ++...+.+... .|++++|..
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--VYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999887 9999999999999999999999999999998754  55555555433 799999999


Q ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---CchhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005632          228 HIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK---NAIDHADLITEVADTLMSLGHSNSALKYYHF  304 (687)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  304 (687)
                      .|+++++.    .|....++..++.++...|++++|+.+|++++..   .|.....+|..++..+...|++++|..++++
T Consensus       191 ~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          191 IFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999    6677899999999999999999999999999985   3334788999999999999999999999999


Q ss_pred             hhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 005632          305 LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS  356 (687)
Q Consensus       305 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  356 (687)
                      ++.. .|+++.... ++.+.   .++        +.+.+.|+++.++..||.
T Consensus       267 a~~~-~p~~~~~~~-~~~~~---~r~--------~~l~~~P~~~~~ln~lgY  305 (308)
T 2ond_A          267 RFTA-FREEYEGKE-TALLV---DRY--------KFMDLYPCSASELKALGY  305 (308)
T ss_dssp             HHHH-TTTTTSSCH-HHHHH---TTT--------CBTTBCSSCHHHHHTTTC
T ss_pred             HHHH-cccccccch-HHHHH---HHH--------HhcccCCCCHHHHHhcCC
Confidence            9987 565433221 13332   222        677889999998887764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=4.8e-21  Score=179.43  Aligned_cols=210  Identities=15%  Similarity=0.178  Sum_probs=187.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP-NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      +...++..|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|++++..+|++..++..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            447889999999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEPKDI-------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKTGAQLFLK  182 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~  182 (687)
                      +...|++++|+..++++++.+|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.++..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            9999999999999999999999998       66999999999999999999999999999999  99999999999977


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 005632          183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL  255 (687)
Q Consensus       183 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (687)
                      .|     ...++++....+....    ...+......+.+++|+.+++++++.    .|.+..+...++.+..
T Consensus       166 ~~-----~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~a~~l----~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          166 NG-----ADVLRKATPLASSNKE----KYASEKAKADAAFKKAVDYLGEAVTL----SPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HH-----HHHHHHHGGGTTTCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHT
T ss_pred             HH-----HHHHHHHHhcccCCHH----HHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHH
Confidence            65     4456666666655532    23455566778899999999999999    7777777777776643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.87  E-value=6.5e-21  Score=198.48  Aligned_cols=217  Identities=13%  Similarity=0.041  Sum_probs=204.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY-EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      +.+++++..++......|.+..+++.+|.++...|++ ++|+..|+++++.+|+++.++..+|.+|...|++++|+..|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3467888899999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHc---------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc--------
Q 005632          195 EYLKVHPSDADLSVIDLLVAILMEN---------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL--------  257 (687)
Q Consensus       195 ~~~~~~p~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  257 (687)
                      ++++.+|+ .  .++..+|.++...         |++++|+..|+++++.    .|....++..+|.++...        
T Consensus       162 ~al~~~p~-~--~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~  234 (474)
T 4abn_A          162 GALTHCKN-K--VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGRSWYILGNAYLSLYFNTGQNP  234 (474)
T ss_dssp             HHHTTCCC-H--HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHhhCCC-H--HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence            99999998 3  4899999999999         9999999999999999    888899999999999999        


Q ss_pred             CCHHHHHHHHHHHhhhCch--hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHH
Q 005632          258 GNMEKAEILFADLQWKNAI--DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIM  335 (687)
Q Consensus       258 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  335 (687)
                      |++++|+..|++++...|.  .++.++..+|.++...|++++|+..|++++.. .|+++.++..++.++...|++++|+.
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998872  48999999999999999999999999999988 89999999999999999999999999


Q ss_pred             HHHHH
Q 005632          336 FFYKA  340 (687)
Q Consensus       336 ~~~~a  340 (687)
                      .+.+.
T Consensus       314 ~~~~~  318 (474)
T 4abn_A          314 SKGKT  318 (474)
T ss_dssp             HTTTC
T ss_pred             Hhccc
Confidence            88776

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.87  E-value=6.8e-21  Score=205.41  Aligned_cols=173  Identities=19%  Similarity=0.208  Sum_probs=150.2

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL  108 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  108 (687)
                      ..|.++..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34667788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                      |.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++...|++++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCC
Q 005632          189 SIGILEEYLKVHP  201 (687)
Q Consensus       189 A~~~~~~~~~~~p  201 (687)
                      |++.+++++++.|
T Consensus       164 A~~~~~kal~l~~  176 (723)
T 4gyw_A          164 YDERMKKLVSIVA  176 (723)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCh
Confidence            8888888887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=8.2e-21  Score=204.80  Aligned_cols=172  Identities=20%  Similarity=0.232  Sum_probs=165.6

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      ..|++++++..+|.++..+|++++|+.+|+++++++|++..++..+|.++..+|++++|+..|+++++++|++..++.++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY  222 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~  222 (687)
                      |.++..+|++++|++.|+++++++|++..++.++|.++...|++++|+..|+++++++|++..  ++..+|.++...|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~--a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD--AYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHhhhhhHHHhcccH
Confidence            999999999999999999999999999999999999999999999999999999999999876  799999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 005632          223 EKTLQHIEHAQIVR  236 (687)
Q Consensus       223 ~~A~~~~~~~~~~~  236 (687)
                      ++|++.++++++..
T Consensus       162 ~~A~~~~~kal~l~  175 (723)
T 4gyw_A          162 TDYDERMKKLVSIV  175 (723)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999873

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.86  E-value=3.2e-20  Score=173.77  Aligned_cols=212  Identities=15%  Similarity=0.058  Sum_probs=184.4

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP-KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA  143 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  143 (687)
                      +.++..++.+|.+++..|++++|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            55789999999999999999999999999999998 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CCcHHHHHHHHH
Q 005632          144 SFYVEIGDYEKAAESYEQIQKLFPDNV-------DATKTGAQLFLKCGQTARSIGILEEYLKVHPS--DADLSVIDLLVA  214 (687)
Q Consensus       144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~~la~  214 (687)
                      .++...|++++|+..|+++++.+|+++       .++..+|.++...|++++|+..|+++++.+|+  +..  ++..+|.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD--ALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH--HHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH--HHHHHHH
Confidence            999999999999999999999999998       66999999999999999999999999999998  654  7899999


Q ss_pred             HHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632          215 ILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLM  290 (687)
Q Consensus       215 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  290 (687)
                      ++...|+.     .++++...    .+....  ...+......+.+++|+..+++++...|. ++.+...++.+..
T Consensus       162 ~~~~~~~~-----~~~~a~~~----~~~~~~--~~~~~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i~~  225 (228)
T 4i17_A          162 LFYNNGAD-----VLRKATPL----ASSNKE--KYASEKAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHH-----HHHHHGGG----TTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred             HHHHHHHH-----HHHHHHhc----ccCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH
Confidence            99877653     34455444    222221  22344455677899999999999999885 7888887777653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.85  E-value=2.6e-20  Score=189.53  Aligned_cols=310  Identities=12%  Similarity=0.040  Sum_probs=238.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCC---CCHHHH--HHH--HHHHHHcCCHHHHH-----------HHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSP---KDSALW--KQL--LTFAVQKGDTAQAM-----------YYIRQAI  129 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~a~  129 (687)
                      ......-...++..+++++|...++.+.+.-+   .+....  +.+  .+.....++++.+.           ..++++-
T Consensus        12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~   91 (383)
T 3ulq_A           12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID   91 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence            34445555667789999999999988865422   234333  222  22233334444444           5555543


Q ss_pred             HhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632          130 RAEPKDIS------LRIHLASFYVEIGDYEKAAESYEQIQKL---FPD---NVDATKTGAQLFLKCGQTARSIGILEEYL  197 (687)
Q Consensus       130 ~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~  197 (687)
                      . .|....      .++.+|.++...|++++|+..|++++++   .++   ...++..+|.++...|++++|+..+++++
T Consensus        92 ~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al  170 (383)
T 3ulq_A           92 K-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY  170 (383)
T ss_dssp             H-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             h-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3 333322      3445999999999999999999999987   233   45789999999999999999999999999


Q ss_pred             HhCCCCCc-----HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632          198 KVHPSDAD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KELPLKLKVKAGICYLRLGNMEKAEILFADL  270 (687)
Q Consensus       198 ~~~p~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  270 (687)
                      +..+....     ..++..+|.++...|++++|+.++++++...+..  .+....++..+|.++...|++++|+.+++++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            98655443     2468899999999999999999999999885432  2334468899999999999999999999999


Q ss_pred             hh-----hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc----CCCcHHHHHHHHHHHHHhhc---HHHHHHHHH
Q 005632          271 QW-----KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA----GTDNGYLYLKLAECYLSLKE---RAHAIMFFY  338 (687)
Q Consensus       271 ~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~~~~  338 (687)
                      +.     ...+....++..+|.++...|++++|+.++++++...    ++.....+..+|.++...|+   +.+|+..++
T Consensus       251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~  330 (383)
T 3ulq_A          251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE  330 (383)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            88     4523478899999999999999999999999988752    23333446779999999999   888888888


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCc
Q 005632          339 KALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDS  379 (687)
Q Consensus       339 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  379 (687)
                      +. ...|....++..+|.++...|++++|..+++++++...
T Consensus       331 ~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          331 SK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            76 44455567888999999999999999999998776543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.85  E-value=4.7e-20  Score=176.55  Aligned_cols=174  Identities=19%  Similarity=0.203  Sum_probs=125.0

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SAL  104 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~  104 (687)
                      +.+...++.+|..++..|+|++|+..|++++..+|++   +.+++.+|.+++..|++++|+..|++++...|++   +.+
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            4466778888888888888888888888888888887   7888888888888888888888888888887743   567


Q ss_pred             HHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q 005632          105 WKQLLTFAVQ--------KGDTAQAMYYIRQAIRAEPKDISLR-----------------IHLASFYVEIGDYEKAAESY  159 (687)
Q Consensus       105 ~~~la~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~  159 (687)
                      ++.+|.++..        .|++++|+..|++++..+|+++.+.                 +.+|.+|...|++++|+..|
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            8888888888        8888888888888888888776554                 44555555555555555555


Q ss_pred             HHHHHhCCC---CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCC
Q 005632          160 EQIQKLFPD---NVDATKTGAQLFLKC----------GQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       160 ~~~~~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      +++++..|+   .+.+++.+|.++...          |++++|+..|+++++..|+++
T Consensus       172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            555555554   234555555555544          555555555555555555543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.85  E-value=2e-20  Score=184.02  Aligned_cols=381  Identities=12%  Similarity=0.053  Sum_probs=198.7

Q ss_pred             HHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632           79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES  158 (687)
Q Consensus        79 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  158 (687)
                      ...|+.++|.+++++.     +++.+|..+|.++...|++++|++.|.++     +++..+...+..+...|++++|+.+
T Consensus        14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            3556677777777766     33457777777777777777777777653     3555677777777777888888887


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc
Q 005632          159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS  238 (687)
Q Consensus       159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  238 (687)
                      ++.+.+..+ ++.+...++.+|.+.|++.++.++++     .|+..   .|..+|..+...|.|++|..+|.++      
T Consensus        84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~---a~~~IGd~~~~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-----GPNNA---HIQQVGDRCYDEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             --------------------------CHHHHTTTTT-----CC-------------------CTTTHHHHHHHT------
T ss_pred             HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence            777776433 35666777777777888877776664     24332   6778888888888888888888865      


Q ss_pred             CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHH
Q 005632          239 GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYL  318 (687)
Q Consensus       239 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  318 (687)
                            ..+..++.++.++|++++|++.++++      .++..|..++.++...|+++.|..+...+.     .+|.-..
T Consensus       149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~  211 (449)
T 1b89_A          149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELE  211 (449)
T ss_dssp             ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHH
T ss_pred             ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHH
Confidence                  24677888888888898898888887      267888999999999999999977665422     2344455


Q ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHhcCCCCcCCc-----ccCCCCCCChhh
Q 005632          319 KLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEE--AKEEEAITLLSPPKDLDS-----LDMNSDKSNPWW  391 (687)
Q Consensus       319 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~  391 (687)
                      .+..+|.+.|++++|+.++++++.+++.+..++..++.++.+-  ++..+.++.|...++..|     ....        
T Consensus       212 ~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~--------  283 (449)
T 1b89_A          212 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH--------  283 (449)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT--------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH--------
Confidence            6888999999999999999999999999999999999888764  688999999999988877     5543        


Q ss_pred             hhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchh
Q 005632          392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKS  471 (687)
Q Consensus       392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (687)
                          +|..+..+|...++++.|+..+..-...+.+-+                                           
T Consensus       284 ----~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~-------------------------------------------  316 (449)
T 1b89_A          284 ----LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG-------------------------------------------  316 (449)
T ss_dssp             ----CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHH-------------------------------------------
T ss_pred             ----HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhH-------------------------------------------
Confidence                778999999999999999765443322211100                                           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHH
Q 005632          472 ELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEE  551 (687)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e  551 (687)
                       ..+.                                                 ++..+.+.+++...+..|.  +...+
T Consensus       317 -~f~~-------------------------------------------------~~~kv~n~elyYkai~fyl--~~~p~  344 (449)
T 1b89_A          317 -QFKD-------------------------------------------------IITKVANVELYYRAIQFYL--EFKPL  344 (449)
T ss_dssp             -HHHH-------------------------------------------------HHHHCSSTHHHHHHHHHHH--HHCGG
T ss_pred             -HHHH-------------------------------------------------HHhchhHHHHHHHHHHHHH--hcCHH
Confidence             0000                                                 1234555667777666666  66666


Q ss_pred             HHHHHHHHHH--HhhccCchhhHHHHHHhhhhhhcccCCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcC
Q 005632          552 ASEIINLSMR--LAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGK  622 (687)
Q Consensus       552 A~~~l~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  622 (687)
                      ++.-+..++.  +++.       .     .....-..|+..-...+++.+.  +-++..+-..+..++...++
T Consensus       345 ~l~~ll~~l~~~ld~~-------r-----~v~~~~~~~~l~l~~~yl~~v~--~~n~~~vnealn~l~ieeed  403 (449)
T 1b89_A          345 LLNDLLMVLSPRLDHT-------R-----AVNYFSKVKQLPLVKPYLRSVQ--NHNNKSVNESLNNLFITEED  403 (449)
T ss_dssp             GHHHHHHHHGGGCCHH-------H-----HHHHHHHTTCTTTTHHHHHHHH--TTCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccCcH-------H-----HHHHHHHcCCcHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhhh
Confidence            7777777762  2222       1     1233346688888888887775  34677888899999999888

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.84  E-value=1.6e-18  Score=175.67  Aligned_cols=304  Identities=12%  Similarity=0.019  Sum_probs=219.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch-----HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC------HH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP-----ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SA  103 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~  103 (687)
                      ...+..|..++..|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|..      ..
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   94 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3456678889999999999999999999877543     267888999999999999999999998875432      23


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CH
Q 005632          104 LWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-----NV  170 (687)
Q Consensus       104 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~  170 (687)
                      ++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...+.     ..
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            46788999999999999999999988764        233456778899999999999999999999988764     24


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--Cc-HHHH--HHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHH
Q 005632          171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSD--AD-LSVI--DLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLK  245 (687)
Q Consensus       171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~-~~~~--~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  245 (687)
                      .++..+|.++...|++++|...+++++...+..  .. +...  ...+.++...|++++|..++++++...+........
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            567788889999999999999999888764332  11 1111  134455778889999988888877652211112233


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhhCch-----hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHH
Q 005632          246 LKVKAGICYLRLGNMEKAEILFADLQWKNAI-----DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKL  320 (687)
Q Consensus       246 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  320 (687)
                      .+..++.++...|++++|...+++++...+.     ....++..++.++...|++++|...+++++....+      ...
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~  328 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGF  328 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccH
Confidence            5667888888888888888888887654321     23346777888888888888888888887765211      011


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632          321 AECYLSLKERAHAIMFFYKALDRFED  346 (687)
Q Consensus       321 a~~~~~~g~~~~A~~~~~~al~~~p~  346 (687)
                      ...+...|  +.....++..+...|.
T Consensus       329 ~~~~~~~g--~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          329 ISHFVIEG--EAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             CHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred             HHHHHHcc--HHHHHHHHHHHhCCCC
Confidence            12333344  5666677777777765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=2.2e-20  Score=184.13  Aligned_cols=175  Identities=18%  Similarity=0.231  Sum_probs=149.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc
Q 005632           26 SKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL   97 (687)
Q Consensus        26 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   97 (687)
                      .....|..+..++..|..++..|++++|+.+|+++++.        .|..+.++..+|.++...|++++|+.++++++..
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34455677888899999999999999999999999984        5667889999999999999999999999999877


Q ss_pred             --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632           98 --------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHLASFYVEIGDYEKAAESYEQ  161 (687)
Q Consensus        98 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~  161 (687)
                              .|....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+|++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  178 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR  178 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                    35567788899999999999999999999998864        44566788899999999999999999999


Q ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          162 IQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       162 ~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      ++..        .|....++..+|.++...|++++|+..+++++...
T Consensus       179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9887        55566778888888988999999998888888753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.84  E-value=5.3e-20  Score=181.39  Aligned_cols=256  Identities=14%  Similarity=0.102  Sum_probs=145.1

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE---  132 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---  132 (687)
                      +|..+.++..+|.++...|++++|+.+|++++.+        .|....++..+|.++...|++++|+.++++++...   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4455666777777777777777777777777763        45555666677777777777777777777776652   


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632          133 -----PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF--------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       133 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  199 (687)
                           |....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++..
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 3334556666666666666666666666666553        333445555666666666666666666665555


Q ss_pred             --------CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          200 --------HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       200 --------~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                              .|..  ..++..+|.++...|++++|+.++++++...+.    ..     .       +......       
T Consensus       183 ~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~-----~-------~~~~~~~-------  237 (311)
T 3nf1_A          183 YQTKLGPDDPNV--AKTKNNLASCYLKQGKFKQAETLYKEILTRAHE----RE-----F-------GSVDDEN-------  237 (311)
T ss_dssp             HHHTSCTTCHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HH-----H-------C-------------
T ss_pred             HHHHhCCCCHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hc-----C-------CCCCcch-------
Confidence                    1111  124455555555555555555555555544110    00     0       0000000       


Q ss_pred             hhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC
Q 005632          272 WKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED  346 (687)
Q Consensus       272 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  346 (687)
                       .........+...+..+...+.+.+|...+..+... .|..+.++..+|.+|...|++++|+.+|++++++.|.
T Consensus       238 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          238 -KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             -HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence             000012333444455556667777788888777765 6778889999999999999999999999999988775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.84  E-value=6.5e-19  Score=178.65  Aligned_cols=312  Identities=12%  Similarity=0.010  Sum_probs=230.2

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHH----HcCChHHHH---------HHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSP---NLPETYNTLGLAHS----ALGNHKSAF---------DFYVIA   94 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~----~~g~~~~A~---------~~~~~a   94 (687)
                      ++.+...+..=..+...+++++|..+++++....+   .+..+++..+...+    ..+.+..+.         ..++++
T Consensus         9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i   88 (378)
T 3q15_A            9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI   88 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence            45677888888888999999999999999866432   23444432222222    122322222         444443


Q ss_pred             hccC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632           95 AHLS-PKD----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP------KDISLRIHLASFYVEIGDYEKAAESYEQIQ  163 (687)
Q Consensus        95 l~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  163 (687)
                      -... +.+    ...++..|..+...|++++|+..|++++...+      ....++..+|.++...|+++.|+.++++++
T Consensus        89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al  168 (378)
T 3q15_A           89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL  168 (378)
T ss_dssp             HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            3221 111    12466789999999999999999999988632      235678899999999999999999999999


Q ss_pred             HhCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC----cHHHHHHHHHHHHHcchHHHHHHHHHHH
Q 005632          164 KLFPD-------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA----DLSVIDLLVAILMENNAYEKTLQHIEHA  232 (687)
Q Consensus       164 ~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~  232 (687)
                      +..+.       ...++..+|.++...|++++|+..++++++..+...    ...++..+|.++...|++++|+.+++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            87543       245678999999999999999999999988643221    1246788999999999999999999999


Q ss_pred             HHHhcc-CCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc----hhhHHHHHHHHHHHHhcCC---hHHHHHHHHH
Q 005632          233 QIVRFS-GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA----IDHADLITEVADTLMSLGH---SNSALKYYHF  304 (687)
Q Consensus       233 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~  304 (687)
                      +..... ..+....++..+|.++...|++++|+.++++++...+    +.....+..++.++...++   +.+|+..+++
T Consensus       249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~  328 (378)
T 3q15_A          249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK  328 (378)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            985321 2555678889999999999999999999999877532    1234456777888888888   8888888876


Q ss_pred             hhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc
Q 005632          305 LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF  344 (687)
Q Consensus       305 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  344 (687)
                      ...  .+....++..+|.+|...|++++|..+|+++++..
T Consensus       329 ~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          329 KNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            431  35566778889999999999999999999988764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.84  E-value=2.4e-19  Score=171.57  Aligned_cols=201  Identities=13%  Similarity=0.074  Sum_probs=159.8

Q ss_pred             HHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 005632           61 VRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD--  135 (687)
Q Consensus        61 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~--  135 (687)
                      ...+|.++..++.+|..++..|++++|+..|++++...|++   +.+++.+|.++...|++++|+..|++++..+|++  
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            34678899999999999999999999999999999999998   8999999999999999999999999999998854  


Q ss_pred             -HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCChHHH
Q 005632          136 -ISLRIHLASFYVE--------IGDYEKAAESYEQIQKLFPDNVDAT-----------------KTGAQLFLKCGQTARS  189 (687)
Q Consensus       136 -~~~~~~la~~~~~--------~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~la~~~~~~g~~~~A  189 (687)
                       +.+++.+|.++..        .|++++|+..|+++++.+|+++.+.                 +.+|.+|...|++++|
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence             6789999999999        9999999999999999999886555                 6677778888888888


Q ss_pred             HHHHHHHHHhCCCCCc-HHHHHHHHHHHHHc----------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcC
Q 005632          190 IGILEEYLKVHPSDAD-LSVIDLLVAILMEN----------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLG  258 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~-~~~~~~la~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  258 (687)
                      +..|+++++..|++.. ..++..+|.++...          |++++|+..|++++..+| +.+....+...++.++...+
T Consensus       168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~l~~~~~~~~  246 (261)
T 3qky_A          168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-DSPLLRTAEELYTRARQRLT  246 (261)
T ss_dssp             HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHHH
Confidence            8888888877777542 24677777777766          777777777777777722 22233444555555555555


Q ss_pred             CHHH
Q 005632          259 NMEK  262 (687)
Q Consensus       259 ~~~~  262 (687)
                      +++.
T Consensus       247 ~~~~  250 (261)
T 3qky_A          247 ELEG  250 (261)
T ss_dssp             HHHT
T ss_pred             Hhhh
Confidence            4433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.84  E-value=1.2e-18  Score=166.63  Aligned_cols=252  Identities=9%  Similarity=0.015  Sum_probs=205.4

Q ss_pred             ChhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--ChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALG--NHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      +++....+.........|.+ ++|+..+.+++..+|++..+|...+.++...|  ++++++.++..++..+|++..+|..
T Consensus        29 ~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~  108 (306)
T 3dra_A           29 DEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY  108 (306)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence            56778888888888888887 58999999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHH----HHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632          108 LLTFA----VQK---GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE--KAAESYEQIQKLFPDNVDATKTGAQ  178 (687)
Q Consensus       108 la~~~----~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~la~  178 (687)
                      .+.++    ...   +++++++.++.++++.+|.+..+|...+.+....|.++  ++++.+.++++.+|.+..+|...+.
T Consensus       109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~  188 (306)
T 3dra_A          109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF  188 (306)
T ss_dssp             HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99998    666   78999999999999999999999999999999999988  9999999999999999999999999


Q ss_pred             HHHHcCC------hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHhccCCCchHHHHHHHH
Q 005632          179 LFLKCGQ------TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK-TLQHIEHAQIVRFSGKELPLKLKVKAG  251 (687)
Q Consensus       179 ~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~l~  251 (687)
                      ++...+.      ++++++++++++..+|.+..  +|+.++.++...|+..+ ...++.+++.. ....+.+..++..++
T Consensus       189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S--aW~y~~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~al~~la  265 (306)
T 3dra_A          189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS--TWNYLLGIHERFDRSITQLEEFSLQFVDL-EKDQVTSSFALETLA  265 (306)
T ss_dssp             HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHTTCCGGGGHHHHHTTEEG-GGTEESCHHHHHHHH
T ss_pred             HHHhccccchhhhHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhcCCChHHHHHHHHHHHhc-cCCCCCCHHHHHHHH
Confidence            9988887      88888888888888888875  78888888888777544 33444544443 111244556666667


Q ss_pred             HHHHHcCCHHHHHHHHHHHhh-hCchhhHHHHHHHH
Q 005632          252 ICYLRLGNMEKAEILFADLQW-KNAIDHADLITEVA  286 (687)
Q Consensus       252 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~la  286 (687)
                      .++.+.|+.++|+.+|+.+.. .+|. ....|...+
T Consensus       266 ~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~  300 (306)
T 3dra_A          266 KIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQI  300 (306)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHH
T ss_pred             HHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHH
Confidence            777666777777777777665 3442 555555444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.83  E-value=3.5e-18  Score=173.11  Aligned_cols=278  Identities=15%  Similarity=0.088  Sum_probs=192.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-----ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------I  136 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~  136 (687)
                      ..++..+|.++...|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            35677788888899999999999999888776542     256778888888999999999999888765432      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---
Q 005632          137 SLRIHLASFYVEIGDYEKAAESYEQIQKLF--------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---  205 (687)
Q Consensus       137 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---  205 (687)
                      .++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...+....   
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            336778888888889988888888888764        233456777888888888888888888888887665321   


Q ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCc-hHHHH--HHHHHHHHHcCCHHHHHHHHHHHhhhCchh---hH
Q 005632          206 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL-PLKLK--VKAGICYLRLGNMEKAEILFADLQWKNAID---HA  279 (687)
Q Consensus       206 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~  279 (687)
                      ..++..+|.++...|++++|...+++++......... .....  ...+.++...|++++|...+++++...+..   ..
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            2356778888888888888888888887764321111 11111  133445667788888888777776543321   12


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhhccC--C---CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcC
Q 005632          280 DLITEVADTLMSLGHSNSALKYYHFLETNAG--T---DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFE  345 (687)
Q Consensus       280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  345 (687)
                      ..+..++.++...|++++|...+++++....  +   ....++..+|.++...|++++|...+++++...+
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            2456667777777777777777776654311  1   1223566667777777777777777777766543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.83  E-value=2.6e-19  Score=164.34  Aligned_cols=170  Identities=19%  Similarity=0.249  Sum_probs=141.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHH----------------HHHHHHHcCChHHHHHHHHHHhc
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNT----------------LGLAHSALGNHKSAFDFYVIAAH   96 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~al~   96 (687)
                      ++..++.+|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999                88888888999999999999888


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHH
Q 005632           97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD--YEKAAESYEQIQKLFPDNVDATK  174 (687)
Q Consensus        97 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~  174 (687)
                      ++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+  ...+...+.+++...| ...+++
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~  161 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARY  161 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHH
Confidence            8888888888889988888999999999999988888888888888888876654  4456667776653322 224567


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          175 TGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                      .+|.++...|++++|+..|+++++++|+.
T Consensus       162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          162 RDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            78888888888888888888888888864

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.82  E-value=3.2e-16  Score=166.93  Aligned_cols=442  Identities=10%  Similarity=0.023  Sum_probs=311.0

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 005632           49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD---TAQAMYYI  125 (687)
Q Consensus        49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~  125 (687)
                      ...+-+..|++.+..+|.+...|..+.......++++.+...|++++...|.....|...+......|+   ++.+..+|
T Consensus        47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            456677889999999999999999999999999999999999999999999999999999999999999   99999999


Q ss_pred             HHHHHhCC--CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHH---------H
Q 005632          126 RQAIRAEP--KDISLRIHLASFYVEIGDY--------EKAAESYEQIQKL----FPDNVDATKTGAQLFL---------K  182 (687)
Q Consensus       126 ~~a~~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~~~~~----~p~~~~~~~~la~~~~---------~  182 (687)
                      ++++...|  .++..|..........++.        +.....|++++..    ++.+..+|........         .
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            99999884  6788888877766665553        3344788888764    5666777776665543         3


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH-------------HHHcchHHHHHHHHHHHHHHhc-------cCC--
Q 005632          183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAI-------------LMENNAYEKTLQHIEHAQIVRF-------SGK--  240 (687)
Q Consensus       183 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~-------------~~~~~~~~~A~~~~~~~~~~~~-------~~~--  240 (687)
                      +++.+.+..+|++++.. |......+|......             -....+|+.|...+........       ...  
T Consensus       207 q~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~  285 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ  285 (679)
T ss_dssp             HHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred             HhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence            45678899999999964 544322233221111             1112345555555544322211       000  


Q ss_pred             ------C-------chHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHH-
Q 005632          241 ------E-------LPLKLKVKAGICYLRLG-------NMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSAL-  299 (687)
Q Consensus       241 ------~-------~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-  299 (687)
                            |       .....|..........+       ........|++++...|. .+.+|...+..+...|+.++|. 
T Consensus       286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r  364 (679)
T 4e6h_A          286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT  364 (679)
T ss_dssp             CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred             chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence                  0       11233333333222211       123456778888888775 8888888888888888888886 


Q ss_pred             HHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc-----------CC-----------CHHHHHHHHHH
Q 005632          300 KYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF-----------ED-----------NIDARLTLASL  357 (687)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~la~~  357 (687)
                      .+|++++.. .|.+..+|+.++.+....|+++.|...|++++...           |.           ...+|...+.+
T Consensus       365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~  443 (679)
T 4e6h_A          365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT  443 (679)
T ss_dssp             HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence            888888875 68888888888888888889989998888888752           42           34567778888


Q ss_pred             HHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHhhhhHHHhhhhhh
Q 005632          358 LLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGM-PEDFVDAIFPLVCESLCVEALRQKVKV  436 (687)
Q Consensus       358 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~  436 (687)
                      ..+.|+.+.|..+|.++++..|....           .++...+.+....|+ .+.|.++|+..++..+.          
T Consensus       444 erR~~~l~~AR~vf~~A~~~~~~~~~-----------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~----------  502 (679)
T 4e6h_A          444 MKRIQGLAASRKIFGKCRRLKKLVTP-----------DIYLENAYIEYHISKDTKTACKVLELGLKYFAT----------  502 (679)
T ss_dssp             HHHHHCHHHHHHHHHHHHHTGGGSCT-----------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT----------
T ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCCh-----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC----------
Confidence            88888888888888888766222211           356666666666554 78888888888876532          


Q ss_pred             hhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCchhhhh
Q 005632          437 KRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWHSDDTDDESQQE  516 (687)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  516 (687)
                                                                                                      
T Consensus       503 --------------------------------------------------------------------------------  502 (679)
T 4e6h_A          503 --------------------------------------------------------------------------------  502 (679)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcccCCCcchhHHH
Q 005632          517 AFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCA  596 (687)
Q Consensus       517 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  596 (687)
                                     ...+...++..+...|+.+.|..++++++...+.   .+....++......-...|+.+.+..+.
T Consensus       503 ---------------~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~  564 (679)
T 4e6h_A          503 ---------------DGEYINKYLDFLIYVNEESQVKSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLE  564 (679)
T ss_dssp             ---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             ---------------chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                           1123345666677788899999999998875542   1234556656666666779999999999


Q ss_pred             HHHHhhCCCCchhhHH
Q 005632          597 KYILQLHPYSLSAWNC  612 (687)
Q Consensus       597 ~~~l~~~p~~~~~~~~  612 (687)
                      +.+++..|+++.+-.+
T Consensus       565 ~R~~~~~P~~~~~~~f  580 (679)
T 4e6h_A          565 KRFFEKFPEVNKLEEF  580 (679)
T ss_dssp             HHHHHHSTTCCHHHHH
T ss_pred             HHHHHhCCCCcHHHHH
Confidence            9999999988655443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.82  E-value=9.5e-19  Score=157.74  Aligned_cols=172  Identities=15%  Similarity=0.167  Sum_probs=117.3

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      ....++..|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34445566666666777777777777666666666666666777776777777777777776666666666666666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      ...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|...
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            66677777777777666666666666666666666667777777777666666666666666666666666666666666


Q ss_pred             HHHHHHhCCCCC
Q 005632          193 LEEYLKVHPSDA  204 (687)
Q Consensus       193 ~~~~~~~~p~~~  204 (687)
                      ++++++..|++.
T Consensus       167 ~~~~~~~~~~~~  178 (186)
T 3as5_A          167 FKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHcCCCch
Confidence            666666665554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=5.5e-20  Score=180.83  Aligned_cols=324  Identities=13%  Similarity=0.136  Sum_probs=171.5

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632           45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY  124 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  124 (687)
                      ...|++++|.+++++.     +++.+|..+|.++...|++++|++.|.++     +++..+...+..+...|++++|+.+
T Consensus        14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y   83 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY   83 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            4678899999999998     34579999999999999999999999764     4666899999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          125 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       125 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      ++.+.+..+ ++.+...++.+|.+.|++.++.+.++.     | +..++..+|..+...|.+++|..+|.++       .
T Consensus        84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~  149 (449)
T 1b89_A           84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------S  149 (449)
T ss_dssp             --------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-------T
T ss_pred             HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------h
Confidence            999988544 477788899999999999999888852     4 4469999999999999999999999976       1


Q ss_pred             cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHH
Q 005632          205 DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITE  284 (687)
Q Consensus       205 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  284 (687)
                         .|..++.++...|++++|++.+.++.         ++.+|...+.++...|+++.|..+...+. ..|    +-...
T Consensus       150 ---n~~~LA~~L~~Lg~yq~AVea~~KA~---------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a----d~l~~  212 (449)
T 1b89_A          150 ---NFGRLASTLVHLGEYQAAVDGARKAN---------STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA----DELEE  212 (449)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHT---------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH----HHHHH
T ss_pred             ---hHHHHHHHHHHhccHHHHHHHHHHcC---------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH----hhHHH
Confidence               37799999999999999999999982         45778888999999999999987777643 433    33456


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH--hhcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHH
Q 005632          285 VADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS--LKERAHAIMFFYKALDRFE-----DNIDARLTLASL  357 (687)
Q Consensus       285 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~  357 (687)
                      ++..|.+.|.+++|+.+++.++.. ++....++..+|.+|.+  .++..+.++.|...+.+.|     .+...|..+..+
T Consensus       213 lv~~Yek~G~~eEai~lLe~aL~l-e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l  291 (449)
T 1b89_A          213 LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL  291 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999988 68899999999988875  5678888888888888888     788899999999


Q ss_pred             HHHcCCHHHHHHhcCCCCcC------------CcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          358 LLEEAKEEEAITLLSPPKDL------------DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       358 ~~~~g~~~~A~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      |...++++.|+..+-.....            .+.            +.++++.....|.  +.....+..+...+...
T Consensus       292 y~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~------------n~elyYkai~fyl--~~~p~~l~~ll~~l~~~  356 (449)
T 1b89_A          292 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA------------NVELYYRAIQFYL--EFKPLLLNDLLMVLSPR  356 (449)
T ss_dssp             HHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCS------------STHHHHHHHHHHH--HHCGGGHHHHHHHHGGG
T ss_pred             HHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchh------------HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc
Confidence            99999999999876544322            222            2368888888887  55566666666666443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=3.6e-20  Score=159.84  Aligned_cols=144  Identities=15%  Similarity=0.124  Sum_probs=75.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      |..+...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.+|..+|.++...|++++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            33444445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES-YEQIQKLFPDNVDATKTGAQLFLKCG  184 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~la~~~~~~g  184 (687)
                      |+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus        84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            55555555555555555555555555555555444433 34555555555555555555554444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.81  E-value=1.4e-16  Score=169.75  Aligned_cols=472  Identities=10%  Similarity=0.018  Sum_probs=317.6

Q ss_pred             ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 005632           83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD---YEKAAESY  159 (687)
Q Consensus        83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~  159 (687)
                      ...+-+..|++.+..+|.+...|..++......+.++.+...|++++...|.....|...+......|+   ++.+..+|
T Consensus        47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            345667788999999999999999999999999999999999999999999999999999998888888   99999999


Q ss_pred             HHHHHhCC--CCHHHHHHHHHHHHHcCCh----HHH----HHHHHHHHHhCCC-CCc-HHHHHHHHHHHH---------H
Q 005632          160 EQIQKLFP--DNVDATKTGAQLFLKCGQT----ARS----IGILEEYLKVHPS-DAD-LSVIDLLVAILM---------E  218 (687)
Q Consensus       160 ~~~~~~~p--~~~~~~~~la~~~~~~g~~----~~A----~~~~~~~~~~~p~-~~~-~~~~~~la~~~~---------~  218 (687)
                      ++++...|  .++..|..........++.    +++    ...|++++..-+. +.. ..+|........         .
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            99999884  5777888777766666654    333    4677777765433 222 236666666654         2


Q ss_pred             cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHH
Q 005632          219 NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA  298 (687)
Q Consensus       219 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  298 (687)
                      +++.+.+..+|++++.. |  ......++......-...+.. .+...+..                     ...+|..|
T Consensus       207 q~~~~~~R~iy~raL~i-P--~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e---------------------~~~~y~~A  261 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLLCQ-P--MDCLESMWQRYTQWEQDVNQL-TARRHIGE---------------------LSAQYMNA  261 (679)
T ss_dssp             HHHHHHHHHHHHHHTTS-C--CSSHHHHHHHHHHHHHHHCTT-THHHHHHH---------------------HHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhC-c--cHHHHHHHHHHHHHHHhcCcc-hHHHHHHH---------------------hhHHHHHH
Confidence            45677788888888854 2  111122222221111111110 01111111                     01122333


Q ss_pred             HHHHHHh------hhccC------------C-----C--cHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHHhcCC
Q 005632          299 LKYYHFL------ETNAG------------T-----D--NGYLYLKLAECYLSLK-------ERAHAIMFFYKALDRFED  346 (687)
Q Consensus       299 ~~~~~~~------~~~~~------------~-----~--~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~  346 (687)
                      ...+...      +....            |     .  ....|......-...+       ..+.....|++++...|.
T Consensus       262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~  341 (679)
T 4e6h_A          262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF  341 (679)
T ss_dssp             HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence            3333221      11000            1     0  1234444433322221       134567889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHH-HhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Q 005632          347 NIDARLTLASLLLEEAKEEEAI-TLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESL  425 (687)
Q Consensus       347 ~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  425 (687)
                      +++.|+..+..+...|+.++|. .+|++++...|.+.            .++...+.+....|++++|.+.|.+++....
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~------------~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~  409 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA------------VLAFSLSEQYELNTKIPEIETTILSCIDRIH  409 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999997 99999998888654            3778899999999999999999999987642


Q ss_pred             hhHHHhhhhhhhhhhhhhhhhhHhhhccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 005632          426 CVEALRQKVKVKRRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALAKAAGVEWH  505 (687)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (687)
                      ..-..   .           ..      ..|...            .....                             
T Consensus       410 ~~~~~---~-----------~~------~~p~~~------------~~~~~-----------------------------  428 (679)
T 4e6h_A          410 LDLAA---L-----------ME------DDPTNE------------SAINQ-----------------------------  428 (679)
T ss_dssp             HHHHH---H-----------HH------HSTTCH------------HHHHH-----------------------------
T ss_pred             HHhhh---h-----------hh------ccCcch------------hhhhh-----------------------------
Confidence            11000   0           00      000000            00000                             


Q ss_pred             CCCCCchhhhhhccCCCCCcccCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCchhhHHHHHHhhhhhhcc
Q 005632          506 SDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIINLSMRLAYNILPLEKKEELRSLGAKMAYD  585 (687)
Q Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~eA~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~  585 (687)
                                            .......+.+.++.+..+.|..+.|..++.+|+...+..     ...+....+.+-+.
T Consensus       429 ----------------------~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-----~~~lyi~~A~lE~~  481 (679)
T 4e6h_A          429 ----------------------LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-----TPDIYLENAYIEYH  481 (679)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-----CTHHHHHHHHHHHT
T ss_pred             ----------------------hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHH
Confidence                                  001122355677778888899999999999998752211     12333333444444


Q ss_pred             c-CCCcchhHHHHHHHhhCCCCchhhHHHHHHHHHhcCCcccccchHHHHHHHHhhCCC---CCCccceeccccccccch
Q 005632          586 S-TDPNHGFDCAKYILQLHPYSLSAWNCYYKVLSRMGKINSKHSKHSKFIRYLRAKYKD---CVPPIIISGHQFTMASHH  661 (687)
Q Consensus       586 ~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~~g~~~~~~~~~  661 (687)
                      . ++.+.|..++...++..|+++..|..++......|+    ...+...+.+++...|+   ...++......-...|+.
T Consensus       482 ~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~----~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~  557 (679)
T 4e6h_A          482 ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE----ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL  557 (679)
T ss_dssp             TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred             hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence            4 558999999999999999999999999999999998    78999999999998884   344555666666678999


Q ss_pred             HHHHHHHHHHHhhCCCChhhhh
Q 005632          662 QDAARCYLEAYKLLPENPLINL  683 (687)
Q Consensus       662 ~~A~~~~~~a~~~~P~~p~~~l  683 (687)
                      +.+...+.++.+..|++|-+.+
T Consensus       558 ~~~~~v~~R~~~~~P~~~~~~~  579 (679)
T 4e6h_A          558 NSVRTLEKRFFEKFPEVNKLEE  579 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCcHHHH
Confidence            9999999999999999876654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.81  E-value=1.3e-19  Score=156.38  Aligned_cols=147  Identities=18%  Similarity=0.131  Sum_probs=134.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 005632           73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY  152 (687)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~  152 (687)
                      .||.++...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+.+|+++++++|+++.++..+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            47888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCCCcHHHHHHHHHHHHHcch
Q 005632          153 EKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGI-LEEYLKVHPSDADLSVIDLLVAILMENNA  221 (687)
Q Consensus       153 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~~~la~~~~~~~~  221 (687)
                      ++|+..|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.  ++..++.++...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~--~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA--VYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH--HHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH--HHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999887765 5999999999886  68888888887775

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=2.3e-19  Score=195.29  Aligned_cols=188  Identities=12%  Similarity=0.040  Sum_probs=118.2

Q ss_pred             HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHh--------ccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632           62 RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAA--------HLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEP  133 (687)
Q Consensus        62 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  133 (687)
                      ..+|+++.+++..|   ...|++++|+..+++++        ..+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            55666666655555   55666666666666666        55666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHH
Q 005632          134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLV  213 (687)
Q Consensus       134 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la  213 (687)
                      ++..+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|++..  +++.+|
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~--a~~~lg  541 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS--AAFGLA  541 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH--HHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH--HHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666 6666666666666554  566666


Q ss_pred             HHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCC
Q 005632          214 AILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN  259 (687)
Q Consensus       214 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  259 (687)
                      .++...|++++|+..|+++++.    +|....+++.+|.++...++
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPT----SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTT----STTHHHHHHHHHHHTC----
T ss_pred             HHHHHcCCHHHHHHHHHhhccc----CcccHHHHHHHHHHHHccCC
Confidence            6666666666666666666666    56666666666666655443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.80  E-value=1.7e-17  Score=168.13  Aligned_cols=240  Identities=10%  Similarity=-0.016  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC----cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC---chH
Q 005632          172 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA----DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE---LPL  244 (687)
Q Consensus       172 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~  244 (687)
                      .++..|..+...|++++|+..+++++...+...    ...++..+|.++...|++++|+.++++++..++....   ...
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            455667777777777777777777776533221    1235667777777777777777777777776543222   235


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-----chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc----cCCCcHH
Q 005632          245 KLKVKAGICYLRLGNMEKAEILFADLQWKN-----AIDHADLITEVADTLMSLGHSNSALKYYHFLETN----AGTDNGY  315 (687)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~  315 (687)
                      .++..+|.++...|++++|+..+++++...     +.....++..+|.++...|++++|+.++++++..    ..|..+.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            566777777888888888887777776532     2234567788888888888888888888888762    2566688


Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCC---HHHHHHhcCCCCcCCcccCCCCCC
Q 005632          316 LYLKLAECYLSLKERAHAIMFFYKALDRFE-----DNIDARLTLASLLLEEAK---EEEAITLLSPPKDLDSLDMNSDKS  387 (687)
Q Consensus       316 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~  387 (687)
                      ++..+|.++...|++++|+.++++++++.+     ........++.++...|+   +.+|+.++++.... +        
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~-~--------  333 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLH-A--------  333 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCH-H--------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCCh-h--------
Confidence            899999999999999999999999998844     334556677888888888   88888888863221 1        


Q ss_pred             ChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          388 NPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       388 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                          ....++..+|.+|...|++++|...+.+.++..
T Consensus       334 ----~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          334 ----YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                123578899999999999999999999988654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.80  E-value=2.1e-18  Score=167.62  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=83.3

Q ss_pred             HHHHHHcCChHHHHHHHHHHhccCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 005632           75 GLAHSALGNHKSAFDFYVIAAHLSPK------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------ISLRIHL  142 (687)
Q Consensus        75 ~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l  142 (687)
                      |.+|...|++++|+.+|.+++.+.+.      ...++..+|.+|...|++++|+.+|++++.+.|..      ..++..+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44555566666666666666555321      13455566666666666666666666665554322      2345555


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-----HHHH
Q 005632          143 ASFYVEI-GDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-----SVID  210 (687)
Q Consensus       143 a~~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~~  210 (687)
                      |.+|... |++++|+.+|++++++.|.+      ..++..+|.++..+|++++|+..|++++...|.+...     .++.
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            5555553 55555555555555554432      2344455555555555555555555555555443321     1234


Q ss_pred             HHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          211 LLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       211 ~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      .+|.++...|++++|+..|++++.+
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4455555555555555555555444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.80  E-value=3e-17  Score=157.06  Aligned_cols=237  Identities=7%  Similarity=-0.039  Sum_probs=177.8

Q ss_pred             HcCC-hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---
Q 005632           80 ALGN-HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG--DTAQAMYYIRQAIRAEPKDISLRIHLASFY----VEI---  149 (687)
Q Consensus        80 ~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~----~~~---  149 (687)
                      ..|. .++|+..+.+++.++|++..+|...+.++...|  ++++++.++.+++..+|.+..+|...+.++    ...   
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           44 KAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence            3444 468999999999999999999999999999999  999999999999999999999999999888    666   


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch------
Q 005632          150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA--RSIGILEEYLKVHPSDADLSVIDLLVAILMENNA------  221 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~------  221 (687)
                      +++++++..+.++++.+|.+..+|...+.++...|.++  +++..++++++.+|.+..  +|...+.+....+.      
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s--AW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS--AWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHSSGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhccccchhhh
Confidence            78999999999999999999999999999999999988  999999999999998875  78888888888776      


Q ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHH
Q 005632          222 YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK-AEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALK  300 (687)
Q Consensus       222 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  300 (687)
                      ++++++++++++..    +|.+..+|..++.++...|+..+ ....+.+++...                          
T Consensus       202 ~~eEl~~~~~aI~~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~--------------------------  251 (306)
T 3dra_A          202 IDEELNYVKDKIVK----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE--------------------------  251 (306)
T ss_dssp             HHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG--------------------------
T ss_pred             HHHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc--------------------------
Confidence            77777777777777    66666666666666666665333 223333333221                          


Q ss_pred             HHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q 005632          301 YYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALD-RFEDNIDARLTLA  355 (687)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la  355 (687)
                             ...+.++.++..++.++...|+.++|+++|+.+.+ .+|-....|...+
T Consensus       252 -------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          252 -------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             -------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             -------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence                   00244455555555555555555555555555554 4555555554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.80  E-value=4.4e-18  Score=158.41  Aligned_cols=186  Identities=12%  Similarity=0.035  Sum_probs=133.0

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH---HHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA---LWK  106 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  106 (687)
                      ....++.+|..++..|+|++|+..|++++...|.++   .+++.+|.+++..|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            345688999999999999999999999999998764   68999999999999999999999999999998764   788


Q ss_pred             HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632          107 QLLTFAVQ------------------KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus       107 ~la~~~~~------------------~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                      .+|.++..                  .|++++|+..|+++++.+|+++.+...+..+....+                 .
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~  145 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------R  145 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------H
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------H
Confidence            89998876                  456666666666666666666543321111000000                 0


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          169 NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       169 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      .......+|.++...|++++|+..|+++++..|+++. ..++..+|.++...|++++|+..++++...
T Consensus       146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            0112245666777777777777777777777766542 135666777777777777777777766655

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.80  E-value=1.2e-18  Score=189.69  Aligned_cols=187  Identities=13%  Similarity=-0.007  Sum_probs=136.4

Q ss_pred             HhcCCHHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           45 YAYGNFEQAISLLKEVV--------RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      +..|++++|++.|++++        +.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            66777777777777777        7777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY  196 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  196 (687)
                      ++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++++|++..+++++|.++...|++++|+..|+++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            77778777777777777777777777777777777777 77777777777777777777777777777777777777777


Q ss_pred             HHhCCCCCcHHHHHHHHHHHHHcchHHHH-HHHHHHHHH
Q 005632          197 LKVHPSDADLSVIDLLVAILMENNAYEKT-LQHIEHAQI  234 (687)
Q Consensus       197 ~~~~p~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~  234 (687)
                      ++.+|++..  ++..+|.++...++.+++ ...++++..
T Consensus       561 l~l~P~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~A~~  597 (681)
T 2pzi_A          561 PPTSRHFTT--ARLTSAVTLLSGRSTSEVTEEQIRDAAR  597 (681)
T ss_dssp             CTTSTTHHH--HHHHHHHHTC-------CCHHHHHHHHH
T ss_pred             cccCcccHH--HHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence            777777654  566777777666654433 344444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.79  E-value=1.1e-17  Score=150.65  Aligned_cols=169  Identities=15%  Similarity=0.184  Sum_probs=160.6

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      ....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHH
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL  226 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~  226 (687)
                      ...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+..  ++..+|.++...|++++|+
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK--VHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998764  7889999999999999999


Q ss_pred             HHHHHHHHHhc
Q 005632          227 QHIEHAQIVRF  237 (687)
Q Consensus       227 ~~~~~~~~~~~  237 (687)
                      .++++++...+
T Consensus       165 ~~~~~~~~~~~  175 (186)
T 3as5_A          165 PHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHcCC
Confidence            99999998844

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=2.2e-18  Score=158.12  Aligned_cols=166  Identities=13%  Similarity=0.095  Sum_probs=116.7

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ----------------LLTFAVQKGDTAQAMYYIRQAIR  130 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~a~~  130 (687)
                      +++.++..|..++..|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45678888899999999999999999999999988888888                77777777777777777777777


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCCCCcHHH
Q 005632          131 AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ--TARSIGILEEYLKVHPSDADLSV  208 (687)
Q Consensus       131 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~  208 (687)
                      .+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+  ...+...+.+++...|  .. .+
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~a  159 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK--MQ-YA  159 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH--HH-HH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc--hh-HH
Confidence            7777777777777777777777777777777777777777777777777665543  3344455555432221  11 24


Q ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          209 IDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       209 ~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      ++.+|.++...|++++|+..|+++++.
T Consensus       160 ~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          160 RYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            555666666667777777777777666

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.78  E-value=4.1e-18  Score=165.16  Aligned_cols=224  Identities=16%  Similarity=0.113  Sum_probs=160.1

Q ss_pred             HhcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhcc--------CCCCHHHHHHH
Q 005632           45 YAYGNFEQAISLLKEVVRL--------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL--------SPKDSALWKQL  108 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l  108 (687)
                      ...|++++|+..|+++++.        +|..+.++..+|.++...|++++|+.+|++++..        .|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4578888888888888873        3557788999999999999999999999999977        36667789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRA--------EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL--------FPDNVDA  172 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~  172 (687)
                      |.++...|++++|+.++++++..        +|....++..+|.++...|++++|+.+++++++.        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999987        4556778999999999999999999999999988        6666788


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH---hccCC
Q 005632          173 TKTGAQLFLKCGQTARSIGILEEYLKV---------HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV---RFSGK  240 (687)
Q Consensus       173 ~~~la~~~~~~g~~~~A~~~~~~~~~~---------~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~  240 (687)
                      +..+|.++...|++++|+..+++++..         .+....  .+..++..+...+....+.. +..+...   .....
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  248 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKP--IWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDS  248 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCC--HHHHHHHHHHTTCCCCC-------------CCCCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHH--HHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCC
Confidence            889999999999999999999999876         233332  44555555444433322222 1111111   11122


Q ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          241 ELPLKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       241 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      +....++..+|.++...|++++|+.++++++
T Consensus       249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  279 (283)
T 3edt_B          249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCAS  279 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334444555555555555555555555544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.77  E-value=5.6e-18  Score=164.65  Aligned_cols=199  Identities=15%  Similarity=0.065  Sum_probs=161.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC------HHH
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPN------LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SAL  104 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~  104 (687)
                      +-..|.++...|++++|+..|++++...+.      .+.++..+|.+|...|++++|+.+|++++.+.|..      ..+
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334477888999999999999999987432      26789999999999999999999999999987643      467


Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Q 005632          105 WKQLLTFAVQK-GDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD------  171 (687)
Q Consensus       105 ~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------  171 (687)
                      +..+|.+|... |++++|+.+|++++++.|..      ..++..+|.++..+|++++|+.+|+++++..|++..      
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  199 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            88999999996 99999999999999988754      467899999999999999999999999999887643      


Q ss_pred             -HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHH--HcchHHHHHHHHHHHHHH
Q 005632          172 -ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL---SVIDLLVAILM--ENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       172 -~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~la~~~~--~~~~~~~A~~~~~~~~~~  235 (687)
                       ++..+|.++...|++++|+..|++++.++|+....   ..+..++..+.  ..+++++|+..|++++..
T Consensus       200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence             67899999999999999999999999999986542   12334444443  346677777777776655

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.77  E-value=5.7e-16  Score=148.72  Aligned_cols=234  Identities=9%  Similarity=0.063  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC----------hHHHHHHHHHHhccCCCCHHH
Q 005632           36 KMLGEASLQYAYGNFE-QAISLLKEVVRLSPNLPETYNTLGLAHSALGN----------HKSAFDFYVIAAHLSPKDSAL  104 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~  104 (687)
                      .+..........|+++ +|+..+.+++..+|++..+|...+.+....+.          +++++.++..++..+|.+..+
T Consensus        31 ~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~a  110 (331)
T 3dss_A           31 SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT  110 (331)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHH
Confidence            3344455556788887 79999999999999999999999999988776          689999999999999999999


Q ss_pred             HHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632          105 WKQLLTFAVQKGD--TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD-YEKAAESYEQIQKLFPDNVDATKTGAQLFL  181 (687)
Q Consensus       105 ~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  181 (687)
                      |...+.++...|+  +++++.++.++++.+|.+..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++.
T Consensus       111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          111 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999994  8999999999999999999999999999999998 699999999999999999999999999988


Q ss_pred             Hc--------------CChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-----------chHHHHHHHHHHHHHHh
Q 005632          182 KC--------------GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN-----------NAYEKTLQHIEHAQIVR  236 (687)
Q Consensus       182 ~~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~~~~~~  236 (687)
                      ..              +.++++++++.+++..+|++..  +|+.+..++...           +.++++++.+.++++. 
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S--aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-  267 (331)
T 3dss_A          191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-  267 (331)
T ss_dssp             HHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-
Confidence            87              4588999999999999999876  676665555554           4567777777777777 


Q ss_pred             ccCCCchHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhhCc
Q 005632          237 FSGKELPLKLKVKAGICYL---RLGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       237 ~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~  275 (687)
                         .|.....+..++.+..   ..|..++....+.+++..+|
T Consensus       268 ---~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp  306 (331)
T 3dss_A          268 ---EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  306 (331)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred             ---CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence               4444443333332221   13445555556666555555

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.76  E-value=8.1e-18  Score=139.87  Aligned_cols=117  Identities=21%  Similarity=0.253  Sum_probs=69.6

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      ++|+.++.+..+|..++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+++.+++.+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            45555555555666666666666666666666666666566666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      |.++..+|++++|+..|+++++++|++..++..++.+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            6666666666666666666666666665555555543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.76  E-value=5.1e-18  Score=151.25  Aligned_cols=163  Identities=16%  Similarity=0.139  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH-
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV-  113 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-  113 (687)
                      ..++..|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. 
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH   85 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence            34667778888888888888888888888888888888888888888888888888888887777 6665555554432 


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN--VDATKTGAQLFLKCGQTARSIG  191 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~~  191 (687)
                      ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..++.++...|+.++|+.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            22333456777777777777777777777777777777777777777777777764  4577777777777777777777


Q ss_pred             HHHHHHH
Q 005632          192 ILEEYLK  198 (687)
Q Consensus       192 ~~~~~~~  198 (687)
                      .|++++.
T Consensus       166 ~y~~al~  172 (176)
T 2r5s_A          166 KYRRQLY  172 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.76  E-value=5.6e-18  Score=150.96  Aligned_cols=171  Identities=13%  Similarity=0.048  Sum_probs=150.8

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA  143 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  143 (687)
                      +|...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++.....++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            4556678899999999999999999999999999999999999999999999999999999999999999 887766666


Q ss_pred             HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632          144 SFYV-EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY  222 (687)
Q Consensus       144 ~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~  222 (687)
                      .+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.....++..++.++...|+.
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence            5533 333445689999999999999999999999999999999999999999999999875445788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 005632          223 EKTLQHIEHAQIV  235 (687)
Q Consensus       223 ~~A~~~~~~~~~~  235 (687)
                      ++|+..|++++..
T Consensus       161 ~~A~~~y~~al~~  173 (176)
T 2r5s_A          161 NAIASKYRRQLYS  173 (176)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH
Confidence            9999999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.75  E-value=4.4e-17  Score=157.58  Aligned_cols=165  Identities=15%  Similarity=0.055  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      +...++..|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+........+..+
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            33444444444555555555555555555555555555555555555555555555555555444444333333344444


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN--VDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~g~~~~A~  190 (687)
                      ...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|++  ..++..++.++...|+.++|.
T Consensus       196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            444444444455555555555555555555555555555555555555555554444  444444455554445544444


Q ss_pred             HHHHHHH
Q 005632          191 GILEEYL  197 (687)
Q Consensus       191 ~~~~~~~  197 (687)
                      ..|++++
T Consensus       276 ~~~r~al  282 (287)
T 3qou_A          276 SXYRRQL  282 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.75  E-value=6.7e-17  Score=150.38  Aligned_cols=193  Identities=11%  Similarity=0.002  Sum_probs=143.3

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS---LRI  140 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~  140 (687)
                      .+..++.+|..++..|++++|+..|++++...|.+   ..+++.+|.++...|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            46788999999999999999999999999988876   478999999999999999999999999999998864   788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH--------------
Q 005632          141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--------------  206 (687)
Q Consensus       141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------------  206 (687)
                      .+|.++...|..                ....+..++..+...|++++|+..|+++++..|++...              
T Consensus        83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence            899888764311                01112223333333444444444444444444444321              


Q ss_pred             -HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch
Q 005632          207 -SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI  276 (687)
Q Consensus       207 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  276 (687)
                       .....+|.++...|++++|+..|+++++.+|. .+....++..+|.++...|++++|+..++.+....|.
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence             12357899999999999999999999999432 2334588999999999999999999999998877664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.74  E-value=2.6e-17  Score=159.48  Aligned_cols=155  Identities=16%  Similarity=0.163  Sum_probs=129.8

Q ss_pred             HHcCChHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Q 005632           79 SALGNHKSAFDFYVIAAHL--------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE--------PKDISLRIHL  142 (687)
Q Consensus        79 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l  142 (687)
                      ...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.++++++...        |....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3467788888888887763        35667889999999999999999999999999873        5556789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCCcH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKL--------FPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV--------HPSDADL  206 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~  206 (687)
                      |.++...|++++|+.+|++++..        .|....++..+|.++...|++++|+..+++++..        .|..  .
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~  169 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--A  169 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--H
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--H
Confidence            99999999999999999999987        3556788899999999999999999999999887        3322  2


Q ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          207 SVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       207 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      .++..+|.++...|++++|+.++++++..
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46788999999999999999999998876

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.74  E-value=5.5e-16  Score=149.31  Aligned_cols=192  Identities=14%  Similarity=0.101  Sum_probs=173.2

Q ss_pred             CCChhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWK  106 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~  106 (687)
                      ..+++....+..-......+.+ ++|+..+.+++..+|++..+|...+.++...| .+++++.++..++..+|++..+|.
T Consensus        48 ~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~  127 (349)
T 3q7a_A           48 MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH  127 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             eeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH
Confidence            3456777777766666666655 68999999999999999999999999999999 599999999999999999999999


Q ss_pred             HHHHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHH
Q 005632          107 QLLTFAVQK-G-DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYE--------KAAESYEQIQKLFPDNVDATKTG  176 (687)
Q Consensus       107 ~la~~~~~~-g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~l  176 (687)
                      ..+.++... + ++++++.++.++++.+|.+..+|...+.+....|.++        ++++++.++++.+|.+..+|...
T Consensus       128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R  207 (349)
T 3q7a_A          128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWR  207 (349)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999988 8 8999999999999999999999999999999888887        99999999999999999999999


Q ss_pred             HHHHHHcCC-------hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchH
Q 005632          177 AQLFLKCGQ-------TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAY  222 (687)
Q Consensus       177 a~~~~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~  222 (687)
                      +.++...+.       ++++++++++++..+|++..  +|+.+..++...|..
T Consensus       208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S--aW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS--AWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCC
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHhcCCC
Confidence            999999887       78999999999999999876  788888877776653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.74  E-value=8.7e-17  Score=155.50  Aligned_cols=172  Identities=11%  Similarity=0.028  Sum_probs=157.0

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA  143 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  143 (687)
                      .|.++..++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            48888999999999999999999999999999999999999999999999999999999999999999997777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHH
Q 005632          144 SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYE  223 (687)
Q Consensus       144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~  223 (687)
                      ..+...++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|.++++.+|++.+..++..++.++...|+.+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            77888899999999999999999999999999999999999999999999999999998855558889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 005632          224 KTLQHIEHAQIV  235 (687)
Q Consensus       224 ~A~~~~~~~~~~  235 (687)
                      +|...|++++..
T Consensus       273 ~a~~~~r~al~~  284 (287)
T 3qou_A          273 ALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            999999988764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.73  E-value=7.6e-17  Score=133.96  Aligned_cols=118  Identities=14%  Similarity=0.163  Sum_probs=111.5

Q ss_pred             CCChh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           29 KLSPG-VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        29 ~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      .++|+ +..+..+|..++..|+|++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+++.+|+.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            35554 56677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      +|.++...|++++|+..|+++++++|++..++..++.++
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999988764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.72  E-value=1.8e-16  Score=169.95  Aligned_cols=165  Identities=16%  Similarity=0.128  Sum_probs=141.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632           47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIR  126 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  126 (687)
                      .|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCC
Q 005632          127 QAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC---GQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       127 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~  203 (687)
                      ++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++...   |++++|+..++++++.+|.+
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999999999998


Q ss_pred             CcHHHHHHHH
Q 005632          204 ADLSVIDLLV  213 (687)
Q Consensus       204 ~~~~~~~~la  213 (687)
                      ..  .+..++
T Consensus       162 ~~--~~~~l~  169 (568)
T 2vsy_A          162 VE--PFAFLS  169 (568)
T ss_dssp             SC--HHHHTT
T ss_pred             cC--hHHHhC
Confidence            76  444544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=2.3e-17  Score=141.06  Aligned_cols=113  Identities=15%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632           57 LKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI  136 (687)
Q Consensus        57 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  136 (687)
                      +++++..+|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|..+|.++...|++++|+.+|++++.++|+++
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            34444445555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632          137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       137 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      .+++.+|.++...|++++|+..|++++++.|+.
T Consensus       105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            555555555555555555555555555555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.71  E-value=2.5e-15  Score=144.75  Aligned_cols=266  Identities=9%  Similarity=0.009  Sum_probs=191.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ++..+..+....+..++|+.++.+++.++|++..+|...+.++...| .+++++..+.+++..+|++..+|...+.++..
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~  135 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            33333344444556678999999999999999999999999999999 59999999999999999999999999999988


Q ss_pred             c-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632          149 I-G-DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA--------RSIGILEEYLKVHPSDADLSVIDLLVAILME  218 (687)
Q Consensus       149 ~-g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~  218 (687)
                      . + ++++++..+.++++.+|.+..+|...+.++...|.++        +++..++++++.+|.+..  +|...+.++..
T Consensus       136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S--AW~~R~~lL~~  213 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS--AWGWRWYLRVS  213 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHTT
T ss_pred             hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHh
Confidence            8 7 8999999999999999999999999999998888888        899999999999998875  78899998888


Q ss_pred             cch-------HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHh
Q 005632          219 NNA-------YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMS  291 (687)
Q Consensus       219 ~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~  291 (687)
                      .+.       ++++++++++++..    +|.+..+|..+..++...|....  .++...   -|...+.+...       
T Consensus       214 l~~~~~~~~~~~eELe~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~~~~--~~~~~~---~~~~~~~~~~~-------  277 (349)
T 3q7a_A          214 RPGAETSSRSLQDELIYILKSIHL----IPHNVSAWNYLRGFLKHFSLPLV--PILPAI---LPYTASKLNPD-------  277 (349)
T ss_dssp             STTCCCCHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCSG--GGHHHH---GGGTC-------------
T ss_pred             ccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCCcc--cccccc---ccccccccccc-------
Confidence            876       68888888888888    78888888777777766665300  000000   00000000000       


Q ss_pred             cCChHHHHHHHHHhhhc-----cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHH-HhcCCCHHHHHHHHH
Q 005632          292 LGHSNSALKYYHFLETN-----AGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL-DRFEDNIDARLTLAS  356 (687)
Q Consensus       292 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~  356 (687)
                         ...-......+...     ..+..+.++..++.+|...|+.++|.+.++.+. +.+|-....|...+.
T Consensus       278 ---~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          278 ---IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             ---chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence               00111111111111     124566777777777777777777777777765 556766666655443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.70  E-value=5.4e-17  Score=138.69  Aligned_cols=118  Identities=12%  Similarity=0.030  Sum_probs=111.2

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           87 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF  166 (687)
Q Consensus        87 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  166 (687)
                      +-..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            33557888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          167 PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       167 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      |+++.+++.+|.++..+|++++|+..|+++++..|+.+
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999998764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.70  E-value=2.2e-14  Score=137.72  Aligned_cols=247  Identities=11%  Similarity=0.063  Sum_probs=195.8

Q ss_pred             HcCChH-HHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           80 ALGNHK-SAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD----------TAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        80 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..|.++ +|+.++.+++..+|++..+|...+.++...+.          +++++.++..++..+|.+..+|...+.++..
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~  120 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  120 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence            456655 89999999999999999999999999987776          6899999999999999999999999999999


Q ss_pred             cCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc------
Q 005632          149 IGD--YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ-TARSIGILEEYLKVHPSDADLSVIDLLVAILMEN------  219 (687)
Q Consensus       149 ~g~--~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~------  219 (687)
                      .|.  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.++++.+|.+..  +|..++.++...      
T Consensus       121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S--AW~~R~~ll~~l~~~~~~  198 (331)
T 3dss_A          121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDS  198 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH--HHHHHHHHHHHHSCCC--
T ss_pred             cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHhhhcccc
Confidence            994  8999999999999999999999999999999998 59999999999999999876  788998888776      


Q ss_pred             --------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHH
Q 005632          220 --------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRL-GNMEKAEILFADLQWKNAIDHADLITEVADTLM  290 (687)
Q Consensus       220 --------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~  290 (687)
                              +.++++++++.+++..    +|.+..+|+.+..++... |.                . ...        ..
T Consensus       199 ~~~~~~~~~~~~eEle~~~~ai~~----~P~d~SaW~Y~r~ll~~~~~~----------------~-~~~--------~~  249 (331)
T 3dss_A          199 GPQGRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGAGSGR----------------C-ELS--------VE  249 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHSSSCG----------------G-GCC--------HH
T ss_pred             ccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccCc----------------c-ccc--------hH
Confidence                    5677777778777777    666666665444433322 10                0 000        01


Q ss_pred             hcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHH---HhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005632          291 SLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYL---SLKERAHAIMFFYKALDRFEDNIDARLTLASLL  358 (687)
Q Consensus       291 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  358 (687)
                      ..+.++++++.++++++. .|++...+..++.+..   ..|..++...++.++++++|....-|..+...+
T Consensus       250 ~~~~l~~el~~~~elle~-~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          250 KSTVLQSELESCKELQEL-EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh-CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            123467888888888877 6777666555554332   246778899999999999998877776665443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.67  E-value=2.1e-16  Score=147.07  Aligned_cols=202  Identities=10%  Similarity=0.010  Sum_probs=156.3

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHH-------HHHHHHcCChHHHHHHHHHHhccCCCCH-
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTL-------GLAHSALGNHKSAFDFYVIAAHLSPKDS-  102 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~p~~~-  102 (687)
                      .+....+|..|.-+ ..+++..|.+.|.+++..+|+.+++|..+       +.++...+...+++..+++.+.+.|... 
T Consensus         4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~   82 (282)
T 4f3v_A            4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN   82 (282)
T ss_dssp             HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred             hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence            35667788888876 68999999999999999999999999999       8899999999999999999998777543 


Q ss_pred             --------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632          103 --------------------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI  162 (687)
Q Consensus       103 --------------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  162 (687)
                                          .+...++.++...|++++|...|..++...|.+. +.+.+|.++...+++++|+..|+.+
T Consensus        83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a  161 (282)
T 4f3v_A           83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSA  161 (282)
T ss_dssp             CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTG
T ss_pred             hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence                                3444577788888888888888888877777777 7888888888888888888888766


Q ss_pred             HHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          163 QKLFPDN--VDATKTGAQLFLKCGQTARSIGILEEYLKVH--PSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       163 ~~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      ....+..  ..+++.+|.++..+|++++|+..|++++...  |.. ...+++.+|.++..+|+.++|...|++++..
T Consensus       162 ~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          162 GKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            5542111  3467788888888888888888888877432  221 1236677788888888888888888888777

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.67  E-value=2.6e-15  Score=146.98  Aligned_cols=165  Identities=10%  Similarity=0.096  Sum_probs=90.3

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632           46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA-LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY  124 (687)
Q Consensus        46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  124 (687)
                      ..|++++|.++++++.+..+..          ++. .+++++|..+|.++              |.++...|++++|+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence            4567778888888777765531          111 46777777777665              4566677777777777


Q ss_pred             HHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHH
Q 005632          125 IRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--N----VDATKTGAQLFLKCGQTARSIGI  192 (687)
Q Consensus       125 ~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~  192 (687)
                      |.+++.+.+..      ..++..+|.+|...|++++|+.+|++++++.+.  +    ..++..+|.+|.. |++++|+.+
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            77777654321      234555566666666666666666665554321  1    2334445555544 555555555


Q ss_pred             HHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          193 LEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       193 ~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      |++++.+.|....    ..++..+|.++...|++++|+.+|++++..
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5555544332211    123444444444445555555444444444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.66  E-value=2e-16  Score=135.76  Aligned_cols=116  Identities=15%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632           90 FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus        90 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      .|++++.++|++...++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          170 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       170 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      +.+++.+|.++...|++++|+..|+++++..|+++.
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            555555555555555555555555555555444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.66  E-value=1.1e-15  Score=131.12  Aligned_cols=122  Identities=14%  Similarity=0.122  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632           52 QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA  131 (687)
Q Consensus        52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  131 (687)
                      .+-..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.+
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34456889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632          132 EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT  173 (687)
Q Consensus       132 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  173 (687)
                      +|+++.+++.+|.++...|++++|+..|++++++.|+++...
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            999999999999999999999999999999999998876543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.66  E-value=1.3e-15  Score=141.67  Aligned_cols=211  Identities=10%  Similarity=-0.000  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCCCc------
Q 005632          139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG-------AQLFLKCGQTARSIGILEEYLKVHPSDAD------  205 (687)
Q Consensus       139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------  205 (687)
                      ++..|..+ ..+++..|...|.+++..+|+..++|..+       +.++...++..+++..+.+.+.+.|....      
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~   88 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG   88 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence            34444454 57888888889999999999888888888       78888888888888888888887665422      


Q ss_pred             -------------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632          206 -------------LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW  272 (687)
Q Consensus       206 -------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  272 (687)
                                   ..+...++.++...|+|++|.+.|..+...    .|... ..+.+|.++.+.+++++|+..|+.+..
T Consensus        89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~  163 (282)
T 4f3v_A           89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK  163 (282)
T ss_dssp             TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred             CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence                         124556889999999999999999988765    67667 899999999999999999999998765


Q ss_pred             hCchh-hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CC-cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632          273 KNAID-HADLITEVADTLMSLGHSNSALKYYHFLETNAG-TD-NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID  349 (687)
Q Consensus       273 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  349 (687)
                      ..++. ...+++.+|.++...|++++|+.+|+++..... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..
T Consensus       164 ~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~  242 (282)
T 4f3v_A          164 WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK  242 (282)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred             cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence            43221 246899999999999999999999999985533 55 6789999999999999999999999999999999 87


Q ss_pred             HHHHHHH
Q 005632          350 ARLTLAS  356 (687)
Q Consensus       350 ~~~~la~  356 (687)
                      +...|..
T Consensus       243 ~~~aL~~  249 (282)
T 4f3v_A          243 VAAALKD  249 (282)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            7766643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.66  E-value=8.2e-15  Score=143.38  Aligned_cols=173  Identities=13%  Similarity=0.125  Sum_probs=130.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC------HHHHHHHHHHHHHcCCHHH
Q 005632           47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~  120 (687)
                      .+++++|+..|.++              |.+|...|++++|+.+|.+++.+.+..      ..++..+|.+|...|++++
T Consensus        29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   94 (307)
T 2ifu_A           29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPE   94 (307)
T ss_dssp             SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence            46777777777765              567777888888888888888765422      4567788888888888888


Q ss_pred             HHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHH
Q 005632          121 AMYYIRQAIRAEPK--D----ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       121 A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~  188 (687)
                      |+.+|++++.+.+.  +    ..++..+|.+|.. |++++|+.+|++++.+.|..      ..++..+|.++..+|++++
T Consensus        95 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  173 (307)
T 2ifu_A           95 AVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE  173 (307)
T ss_dssp             GHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHH
Confidence            88888888876432  2    3567788888887 88888888888888876543      4677888888888888888


Q ss_pred             HHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          189 SIGILEEYLKVHPSDAD----LSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       189 A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      |+..|++++.+.|.+..    ...+..+|.++...|++++|+..|++++ .
T Consensus       174 A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~  223 (307)
T 2ifu_A          174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S  223 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence            88888888887655432    2256677778888888888888888888 6

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.66  E-value=1.8e-15  Score=162.08  Aligned_cols=165  Identities=12%  Similarity=0.068  Sum_probs=136.0

Q ss_pred             cCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632           81 LGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE  160 (687)
Q Consensus        81 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  160 (687)
                      .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc---chHHHHHHHHHHHHHHhc
Q 005632          161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN---NAYEKTLQHIEHAQIVRF  237 (687)
Q Consensus       161 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~  237 (687)
                      ++++.+|++..++..+|.++...|++++|+..++++++.+|++..  ++..++.++...   |++++|+..++++++.  
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~--  157 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY--ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ--  157 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH--
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhhccccHHHHHHHHHHHHhc--
Confidence            999999999999999999999999999999999999999998875  788999999999   9999999999999998  


Q ss_pred             cCCCchHHHHHHHH
Q 005632          238 SGKELPLKLKVKAG  251 (687)
Q Consensus       238 ~~~~~~~~~~~~l~  251 (687)
                        .+.....+..++
T Consensus       158 --~p~~~~~~~~l~  169 (568)
T 2vsy_A          158 --GVGAVEPFAFLS  169 (568)
T ss_dssp             --TCCCSCHHHHTT
T ss_pred             --CCcccChHHHhC
Confidence              444444444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=1.1e-14  Score=133.76  Aligned_cols=175  Identities=14%  Similarity=0.058  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005632           51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG----DTAQAMYYIR  126 (687)
Q Consensus        51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~  126 (687)
                      .+|+..|+++.+.  .++.+++.+|.+|...+++++|+.+|+++++.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3578888888875  68999999999999999999999999999864  678999999999988 6    8999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 005632          127 QAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLK----CGQTARSIGILEEY  196 (687)
Q Consensus       127 ~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~~~  196 (687)
                      ++.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..|  .++.+++.+|.+|..    .+++++|+.+|+++
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9965  5789999999999987    8899999999999998877  358999999999998    88999999999999


Q ss_pred             HHhCCCCCcHHHHHHHHHHHHHc-c-----hHHHHHHHHHHHHHH
Q 005632          197 LKVHPSDADLSVIDLLVAILMEN-N-----AYEKTLQHIEHAQIV  235 (687)
Q Consensus       197 ~~~~p~~~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~~~~~  235 (687)
                      .+. |.++.  +++.+|.+|... |     ++++|+.+|+++.+.
T Consensus       156 ~~~-~~~~~--a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          156 SSL-SRTGY--AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHT-SCTTH--HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHc-CCCHH--HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            988 44544  688999998764 3     899999999999877

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.65  E-value=3.8e-17  Score=161.66  Aligned_cols=185  Identities=14%  Similarity=0.152  Sum_probs=161.7

Q ss_pred             cCCHHHHHHHHHH----HHHhCCCchHHHHHHHHHHH------------HcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           47 YGNFEQAISLLKE----VVRLSPNLPETYNTLGLAHS------------ALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        47 ~g~~~~A~~~~~~----~l~~~p~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      .+.+++|+..++.    ++.+.|..  ++...|....            ..+++++|+..+++++...|....++..+|.
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~  155 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT  155 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence            4467888888887    77778875  4555554432            4567888888888888888999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKT  175 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  175 (687)
                      +++..|++++|+..|++++...|.+               ..++.++|.++...|++++|+..|+++++++|+++.+++.
T Consensus       156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  235 (336)
T 1p5q_A          156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR  235 (336)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            9999999999999999999999998               6899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH-HHHHHHHHHH
Q 005632          176 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT-LQHIEHAQIV  235 (687)
Q Consensus       176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~  235 (687)
                      +|.++..+|++++|+..|+++++++|++..  ++..++.++...|++++| ...|++++..
T Consensus       236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQKVLQLYPNNKA--AKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999875  788999999999999998 4567776654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.64  E-value=7.7e-16  Score=148.21  Aligned_cols=196  Identities=9%  Similarity=0.029  Sum_probs=134.0

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF  111 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  111 (687)
                      ..+..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34566777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG  191 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  191 (687)
                      +...|++++|+..|+++++++|+++..+........   ...++...........|.++.+...++.++  .|++++|+.
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~  156 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELE  156 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence            888888888888888888877755322111111111   112222223333345566666666666554  577778888


Q ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHHc-chHHHHHHHHHHHHH
Q 005632          192 ILEEYLKVHPSDADLSVIDLLVAILMEN-NAYEKTLQHIEHAQI  234 (687)
Q Consensus       192 ~~~~~~~~~p~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~  234 (687)
                      .++++++.+|++..  ....++.++... +.+++|...|.++..
T Consensus       157 ~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          157 ECQRNHEGHEDDGH--IRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             TTSGGGTTTSCHHH--HTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHhhhccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            88777777776543  344455555544 566777777776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.64  E-value=1.5e-14  Score=122.20  Aligned_cols=132  Identities=25%  Similarity=0.443  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      +++.+|.++...|++++|+..+++++...|.+...+..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            34444455555555555555555554444444444555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 005632          150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHP  201 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  201 (687)
                      |++++|+..+++++...|.++.++..+|.++...|++++|...+++++..+|
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            5555555555555555555555555555555555555555555555554444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.63  E-value=5.7e-16  Score=153.21  Aligned_cols=154  Identities=13%  Similarity=0.082  Sum_probs=144.2

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---------------HHHHHHHHH
Q 005632           46 AYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---------------SALWKQLLT  110 (687)
Q Consensus        46 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~  110 (687)
                      ..+++++|+..+++++..+|.++.++..+|.+++..|++++|+..|++++.+.|.+               ..++..+|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999998               689999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS-  189 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A-  189 (687)
                      ++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++| 
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHHHh
Q 005632          190 IGILEEYLKV  199 (687)
Q Consensus       190 ~~~~~~~~~~  199 (687)
                      ...|.+++..
T Consensus       285 ~~~~~~~~~~  294 (336)
T 1p5q_A          285 KKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4567766543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.63  E-value=9.1e-16  Score=131.00  Aligned_cols=116  Identities=15%  Similarity=0.040  Sum_probs=62.2

Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632           90 FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus        90 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      .|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          170 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       170 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      +.+++.+|.++...|++++|+..|++++...|+++.
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            555555555555555555555555555555554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.63  E-value=2.7e-14  Score=120.68  Aligned_cols=134  Identities=25%  Similarity=0.481  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      .++..|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632          116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      |++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|++
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999999999999999999998863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.62  E-value=2.6e-15  Score=144.49  Aligned_cols=103  Identities=14%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632           66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus        66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      .++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++..+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC
Q 005632          146 YVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                      +...|++++|+..|+++++++|+
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~  104 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKE  104 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc
Confidence            55555555555555555555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.61  E-value=6.3e-15  Score=125.76  Aligned_cols=125  Identities=17%  Similarity=0.166  Sum_probs=111.1

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632           55 SLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK  134 (687)
Q Consensus        55 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  134 (687)
                      ..|++++..+|+++..++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          135 DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       135 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      ++.+++.+|.++...|++++|+..|++++++.|+++........+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999999999999999887665444443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.6e-14  Score=119.19  Aligned_cols=114  Identities=12%  Similarity=0.072  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34455555666666666666666666666666666666666666666666666666666666666665555556666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAE------PKDISLRIHLASFY  146 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~  146 (687)
                      ...|++++|+..|++++..+      |.+..++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            66666666666666655555      55555555554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.5e-14  Score=119.31  Aligned_cols=118  Identities=13%  Similarity=0.084  Sum_probs=95.2

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      |..+..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            34567778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 005632          145 FYVEIGDYEKAAESYEQIQKLF------PDNVDATKTGAQLFLK  182 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~  182 (687)
                      ++...|++++|+..|+++++++      |.+..++..++.+...
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            8888888888888888888888      7777777777666543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.60  E-value=6.3e-15  Score=131.37  Aligned_cols=130  Identities=22%  Similarity=0.246  Sum_probs=108.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHH-HHHcCCH--HH
Q 005632           44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF-AVQKGDT--AQ  120 (687)
Q Consensus        44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~  120 (687)
                      +...|++++|+..+++++..+|.++.+++.+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45678889999999999999999999999999999999999999999999998888888888888888 7788888  88


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDAT  173 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  173 (687)
                      |+..+++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++...
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            88888888888888888888888888888888888888888888888775443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.59  E-value=5e-14  Score=129.86  Aligned_cols=134  Identities=13%  Similarity=0.134  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      +...++..|..++..|++++|+..|++++  +| ++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            44567778888888888888888888875  33 6778888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDI----------------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      ...|++++|+..|+++++..|.+.                .+++.+|.++...|++++|+..|+++++..|++
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            888888888888888888777665                788888888888888888888888888888866

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.59  E-value=8e-14  Score=127.90  Aligned_cols=179  Identities=18%  Similarity=0.125  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 005632           85 KSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG----DYEKAAESYE  160 (687)
Q Consensus        85 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~  160 (687)
                      .+|+.+|+++.+.  .++.+++.+|.++...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3567778888764  67888888888888888888888888888774  578888888888887 6    7888888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHH
Q 005632          161 QIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHA  232 (687)
Q Consensus       161 ~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~  232 (687)
                      ++.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..|.+....+++.+|.+|..    .+++++|+.+|+++
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            8854  4678888888888877    788888888888888776632112367788888888    77888888888888


Q ss_pred             HHHhccCCCchHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhhhCc
Q 005632          233 QIVRFSGKELPLKLKVKAGICYLRL-G-----NMEKAEILFADLQWKNA  275 (687)
Q Consensus       233 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~~  275 (687)
                      ...     +....+++.+|.+|... |     ++++|+.+|+++.....
T Consensus       156 ~~~-----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          156 SSL-----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHT-----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHc-----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            765     22344677778777654 2     77888888887766543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.58  E-value=1.5e-13  Score=133.55  Aligned_cols=175  Identities=10%  Similarity=0.037  Sum_probs=139.4

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-  135 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-  135 (687)
                      .+|.....+...+..+...|++++|+..+.+++...|...      ..+..+|.++...|++++|+..+++++...+.. 
T Consensus        70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  149 (293)
T 2qfc_A           70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI  149 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred             cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence            3455566777888888999999999999999888776543      335668888888899999999999998765433 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          136 -----ISLRIHLASFYVEIGDYEKAAESYEQIQ---KLFPDNV----DATKTGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       136 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                           ..++..+|.+|...|++++|+.+|++++   +..|++.    .++.++|.+|..+|++++|+.++++++...+..
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~  229 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence                 5578889999999999999999999998   4456543    578899999999999999999999998764321


Q ss_pred             ----CcHHHHHHHHHHHHHcchHHHH-HHHHHHHHHHhc
Q 005632          204 ----ADLSVIDLLVAILMENNAYEKT-LQHIEHAQIVRF  237 (687)
Q Consensus       204 ----~~~~~~~~la~~~~~~~~~~~A-~~~~~~~~~~~~  237 (687)
                          ....++..+|.++...|++++| ..++++++....
T Consensus       230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                1135788999999999999999 777999887743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=6.3e-14  Score=147.58  Aligned_cols=186  Identities=10%  Similarity=0.089  Sum_probs=165.1

Q ss_pred             HHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC----------hHHHHHHHHHHhccCCCCHHHH
Q 005632           37 MLGEASLQYAYGNF-EQAISLLKEVVRLSPNLPETYNTLGLAHSALGN----------HKSAFDFYVIAAHLSPKDSALW  105 (687)
Q Consensus        37 ~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~  105 (687)
                      ...........|++ ++|+..+++++..+|++..+|+..+.++...|+          +++++.++++++..+|++..+|
T Consensus        31 ~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW  110 (567)
T 1dce_A           31 ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTW  110 (567)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            33344445556665 577999999999999999999999999999998          9999999999999999999999


Q ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          106 KQLLTFAVQKG--DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG-DYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       106 ~~la~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      ...+.++...|  ++++++.++.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++..
T Consensus       111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            99999999999  7799999999999999999999999999999999 89999999999999999999999999999888


Q ss_pred             c--------------CChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632          183 C--------------GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK  224 (687)
Q Consensus       183 ~--------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~  224 (687)
                      .              +.++++++++.+++..+|++..  +|+.++.++...+++++
T Consensus       191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s--aW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS--AWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH--HHHHHHHHHSCCCCCSC
T ss_pred             hcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc--HHHHHHHHHhcCCCccc
Confidence            5              4568888888888888888875  78888888877776544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.57  E-value=1.2e-13  Score=121.57  Aligned_cols=130  Identities=16%  Similarity=0.170  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666655555556666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHL--ASFYVEIGDYEKAAESYEQIQ  163 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~  163 (687)
                      ..|++++|+.+|++++..+|.+..++..+  +..+...|++++|+..+.+..
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            66666666666666655555555554332  222455555555555555443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.56  E-value=3.3e-13  Score=127.23  Aligned_cols=246  Identities=13%  Similarity=0.083  Sum_probs=132.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNL-PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTA  119 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  119 (687)
                      .+..|-.|+|..++....   +..|.+ ....+.+.++|+.+|++...       .. .+....+...++..+.  ++  
T Consensus        20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~~~~--~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQFLD--TK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHHHHT--TT--
T ss_pred             HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHHHhc--cc--
Confidence            556677888888777433   233332 23555666777777776631       11 1112223333343331  22  


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632          120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP--DNVDATKTGAQLFLKCGQTARSIGILEEYL  197 (687)
Q Consensus       120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  197 (687)
                       |+..+++.+...+.+...+..+|.++...|++++|+..+.+.+..+|  .+.+++..++.++..+|+.+.|.+.++++.
T Consensus        85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             66666666665545555566777777777777777777777766665  566667777777777777777777777766


Q ss_pred             HhCCC-----CCcHHHHHHHH--HHHHHcc--hHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHcCCHHHHHHH
Q 005632          198 KVHPS-----DADLSVIDLLV--AILMENN--AYEKTLQHIEHAQIVRFSGKEL--PLKLKVKAGICYLRLGNMEKAEIL  266 (687)
Q Consensus       198 ~~~p~-----~~~~~~~~~la--~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~  266 (687)
                      +.+|+     +.   +...++  ++....|  ++.+|...|+++...    .|.  ....++.   ++..+|++++|...
T Consensus       164 ~~~~d~~~~~d~---~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln---~~~~~g~~~eAe~~  233 (310)
T 3mv2_B          164 NAIEDTVSGDNE---MILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLN---LHLQQRNIAEAQGI  233 (310)
T ss_dssp             HHSCHHHHHHHH---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHH---HHHHHTCHHHHHHH
T ss_pred             hcCccccccchH---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHH---HHHHcCCHHHHHHH
Confidence            66662     22   233333  2244444  666666666665544    222  1112222   55556666666666


Q ss_pred             HHHHhhhCc---------hhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHH
Q 005632          267 FADLQWKNA---------IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGY  315 (687)
Q Consensus       267 ~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  315 (687)
                      ++.++...|         ++++.++.+++.+....|+  +|.++++++... .|+++.
T Consensus       234 L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-~P~hp~  288 (310)
T 3mv2_B          234 VELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-DHEHAF  288 (310)
T ss_dssp             HHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-TCCCHH
T ss_pred             HHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-CCCChH
Confidence            655444321         1244444444444444444  444444444443 444443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.56  E-value=1.6e-13  Score=120.74  Aligned_cols=128  Identities=20%  Similarity=0.179  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..++.+|.+++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++..
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTG--AQLFLKCGQTARSIGILEEY  196 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~  196 (687)
                      .|++++|+..|+++++.+|.+..++..+  +..+...|++++|+..+.+.
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5555555555555555555554444222  22244444444444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.56  E-value=2.1e-13  Score=125.64  Aligned_cols=134  Identities=11%  Similarity=0.083  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      ...++.+|.++...|++++|+..|++++  +| ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            3467889999999999999999999996  33 68899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNV----------------DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      ..|++++|+..|+++++..|.+.                .+++.+|.++...|++++|+..+++++...|++.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            99999999999999999888766                8999999999999999999999999999998764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.56  E-value=8.3e-14  Score=117.30  Aligned_cols=123  Identities=11%  Similarity=0.052  Sum_probs=85.1

Q ss_pred             CCCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           28 NKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      ...+.....++..|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+.++++++..+|.+..++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            34455666666777777777777777777777777777777777777777777777777777777777777766667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      +|.++...|++++|+.++++++..+|.+..++..++.++...|
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            7777777777777777777777666666666666666666554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.56  E-value=1e-13  Score=116.72  Aligned_cols=122  Identities=20%  Similarity=0.193  Sum_probs=101.0

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLA  143 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la  143 (687)
                      .|.++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.++++++..+|.++.++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            35567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632          144 SFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ  185 (687)
Q Consensus       144 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  185 (687)
                      .++...|++++|+..|+++++.+|.+..++..++.++...|+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            888888888888888888888888888888888888777653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.55  E-value=9e-14  Score=116.63  Aligned_cols=117  Identities=19%  Similarity=0.241  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      ...++..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+.++.+++..+|+++.++..+|.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      ..|++++|+.++++++..+|+++.++..++.++...|
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            4444444444444444444444444444444444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.55  E-value=8.4e-14  Score=124.02  Aligned_cols=128  Identities=14%  Similarity=0.201  Sum_probs=118.5

Q ss_pred             HHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HH
Q 005632           78 HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF-YVEIGDY--EK  154 (687)
Q Consensus        78 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~--~~  154 (687)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999 8899998  99


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          155 AAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       155 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      |+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999999999876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.55  E-value=9.9e-15  Score=132.72  Aligned_cols=146  Identities=13%  Similarity=0.013  Sum_probs=94.9

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH----------------HHHHHH
Q 005632           45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS----------------ALWKQL  108 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l  108 (687)
                      ...|++++|.+.+.......+..+..+..+|.+++..|++++|+..|.+++...|.++                .++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL   94 (198)
T ss_dssp             -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence            3455566666665555555555566666677777777777777777777776666654                666777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                      |.++...|++++|+.++++++..+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++..+
T Consensus        95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A           95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777766666665


Q ss_pred             HH
Q 005632          189 SI  190 (687)
Q Consensus       189 A~  190 (687)
                      +.
T Consensus       175 ~~  176 (198)
T 2fbn_A          175 KD  176 (198)
T ss_dssp             --
T ss_pred             HH
Confidence            55

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.55  E-value=5.5e-13  Score=125.79  Aligned_cols=275  Identities=10%  Similarity=-0.026  Sum_probs=204.2

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      +|+.++.+ .-.+..|+|..++.-..+   ..|.+ ......+.+++..+|++....        ..+....+...++..
T Consensus        13 ~~~~lf~i-kn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~   80 (310)
T 3mv2_B           13 DPMDYFNI-KQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQF   80 (310)
T ss_dssp             --CCTHHH-HHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHH
T ss_pred             CcHHHHHH-HHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHH
Confidence            45555554 345678999999985443   33333 345666788899999887421        122233355555554


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632          146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT  225 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A  225 (687)
                      +.  ++   |+..+++.+...+.+..++..+|.++...|++++|+..+.+.+..+|......++..++.++...|+.+.|
T Consensus        81 ~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A  155 (310)
T 3mv2_B           81 LD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA  155 (310)
T ss_dssp             HT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence            42  32   89999999887666777788999999999999999999999988887333334788999999999999999


Q ss_pred             HHHHHHHHHHhccCCC------chHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhCch-hhHHHHHHHHHHHHhcCChH
Q 005632          226 LQHIEHAQIVRFSGKE------LPLKLKVKAGICYLRLG--NMEKAEILFADLQWKNAI-DHADLITEVADTLMSLGHSN  296 (687)
Q Consensus       226 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~  296 (687)
                      .+.++++.+.    ++      ....+...-+++.+..|  ++.+|..+|+++....|. ..+..++.   ++...|+++
T Consensus       156 ~k~l~~~~~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~  228 (310)
T 3mv2_B          156 STIFDNYTNA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIA  228 (310)
T ss_dssp             HHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHH
T ss_pred             HHHHHHHHhc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHH
Confidence            9999999888    65      55555555676677777  999999999999888763 12333333   899999999


Q ss_pred             HHHHHHHHhhhcc---------CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 005632          297 SALKYYHFLETNA---------GTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEA  367 (687)
Q Consensus       297 ~A~~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  367 (687)
                      +|...++.+....         .|+++.++.+++.+...+|+  +|.++++++.+..|+++-+.-    ...+...++++
T Consensus       229 eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d----~~~k~~~Fd~~  302 (310)
T 3mv2_B          229 EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH----HQEIDAKFDEL  302 (310)
T ss_dssp             HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHH
Confidence            9999999776541         38899999999999999998  899999999999999986543    22334445555


Q ss_pred             HHhc
Q 005632          368 ITLL  371 (687)
Q Consensus       368 ~~~~  371 (687)
                      ..-|
T Consensus       303 ~~ky  306 (310)
T 3mv2_B          303 VRKY  306 (310)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            5444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.54  E-value=1.4e-13  Score=120.66  Aligned_cols=114  Identities=24%  Similarity=0.250  Sum_probs=79.6

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      +.++..++.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++..+++.+|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44566666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      ++...|++++|+.+|+++++++|++..+++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            7777777777777777777777766665544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.54  E-value=1.6e-14  Score=131.29  Aligned_cols=164  Identities=14%  Similarity=0.052  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-----------  136 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----------  136 (687)
                      +......+.+....|+++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++           
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   83 (198)
T 2fbn_A            4 SHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK   83 (198)
T ss_dssp             ------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH
T ss_pred             cccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence            344455566777788888888888776666667788899999999999999999999999999999887           


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHH
Q 005632          137 -----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDL  211 (687)
Q Consensus       137 -----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~  211 (687)
                           .++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..  ++..
T Consensus        84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~  161 (198)
T 2fbn_A           84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD--IRNS  161 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHH
Confidence                 899999999999999999999999999999999999999999999999999999999999999999875  7889


Q ss_pred             HHHHHHHcchHHHHH-HHHHHHH
Q 005632          212 LVAILMENNAYEKTL-QHIEHAQ  233 (687)
Q Consensus       212 la~~~~~~~~~~~A~-~~~~~~~  233 (687)
                      ++.++...++..++. ..+.+..
T Consensus       162 l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          162 YELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999988888776 4444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.54  E-value=1.7e-13  Score=114.87  Aligned_cols=125  Identities=19%  Similarity=0.158  Sum_probs=119.7

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      .+|.++..++.+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..+++++..+|+++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~   86 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM   86 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA  187 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~  187 (687)
                      |.++...|++++|+..|+++++..|+++.++..++.++...|+++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999998863

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.53  E-value=1.6e-13  Score=133.30  Aligned_cols=168  Identities=11%  Similarity=0.060  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA------LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------IS  137 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~  137 (687)
                      .+...+..++..|++++|...+++++...+..+.      .+..+|.++...|++++|+.++++++...+..      ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            3445577888999999999999999887766554      23358888888899999999999999864432      33


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC----cH
Q 005632          138 LRIHLASFYVEIGDYEKAAESYEQIQKL---FPD----NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA----DL  206 (687)
Q Consensus       138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~  206 (687)
                      ++..+|.+|...|++++|+.+|+++++.   .|.    ...++.++|.+|..+|++++|+.+++++++..+...    ..
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            6889999999999999999999999853   212    245788999999999999999999999998754331    13


Q ss_pred             HHHHHHHHHHHHcc-hHHHHHHHHHHHHHHhc
Q 005632          207 SVIDLLVAILMENN-AYEKTLQHIEHAQIVRF  237 (687)
Q Consensus       207 ~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~  237 (687)
                      .++..+|.++...| .+++|+.++++++....
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~  268 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            57889999999999 57999999999998753

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.53  E-value=7.5e-13  Score=128.54  Aligned_cols=176  Identities=14%  Similarity=0.174  Sum_probs=146.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 005632           99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI------SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN---  169 (687)
Q Consensus        99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---  169 (687)
                      |.....+...+..+...|++++|+..+.++++..|...      ..++.+|.++...|++++|+..+++++...+..   
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  151 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence            34455667788899999999999999999999887654      346678999999999999999999999875543   


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCCCc--HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhcc--C
Q 005632          170 ---VDATKTGAQLFLKCGQTARSIGILEEYL---KVHPSDAD--LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFS--G  239 (687)
Q Consensus       170 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~p~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~  239 (687)
                         ..++..+|.+|...|++++|+.+|++++   ...|++..  ..+++++|.+|...|++++|+.++++++.....  .
T Consensus       152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence               5688999999999999999999999999   44555432  147899999999999999999999999987432  2


Q ss_pred             CCchHHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhC
Q 005632          240 KELPLKLKVKAGICYLRLGNMEKA-EILFADLQWKN  274 (687)
Q Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~  274 (687)
                      ......+++.+|.++...|++++| ..++++++...
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            233578899999999999999999 78899877643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.52  E-value=4e-13  Score=117.81  Aligned_cols=107  Identities=18%  Similarity=0.103  Sum_probs=69.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           99 PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ  178 (687)
Q Consensus        99 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  178 (687)
                      +.+...+..+|.+++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          179 LFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       179 ~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      ++...|++++|+..|+++++++|++..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            666666666666666666666666655

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.51  E-value=8.8e-13  Score=109.42  Aligned_cols=116  Identities=27%  Similarity=0.450  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      +.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            44555556666666666666666666655555555555566666666666666666666666655655555666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC  183 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  183 (687)
                      ..|++++|+..++++++..|+++.++..++.++...
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            666666666666666666666655555555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=2.3e-13  Score=113.14  Aligned_cols=61  Identities=16%  Similarity=0.183  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCC
Q 005632           39 GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP   99 (687)
Q Consensus        39 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   99 (687)
                      .+|..++..|+|++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            3344444444444444444444444444444444444444444444444444444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.50  E-value=1.3e-13  Score=113.37  Aligned_cols=101  Identities=20%  Similarity=0.224  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      .++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46777888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 005632          116 GDTAQAMYYIRQAIRAEPKDI  136 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~  136 (687)
                      |++++|+..++++++.+|++.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            888888888888888777654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.50  E-value=4.1e-13  Score=111.54  Aligned_cols=110  Identities=14%  Similarity=0.154  Sum_probs=99.7

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-------ISLR  139 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~  139 (687)
                      .+.++..+|..++..|++++|+.+|+++++++|+++.++..+|.++..+|++++|+..++++++++|++       ..++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999988765       3578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632          140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGA  177 (687)
Q Consensus       140 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la  177 (687)
                      ..+|.++...|++++|++.|++++...|+ ++....+.
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            89999999999999999999999999885 55554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.50  E-value=2.1e-14  Score=148.39  Aligned_cols=143  Identities=13%  Similarity=0.048  Sum_probs=76.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---------------HHHHHHHHHHH
Q 005632           48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---------------SALWKQLLTFA  112 (687)
Q Consensus        48 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~  112 (687)
                      +++++|+..|+.++...|..+..+..+|.+++..|++++|+..|++++.++|.+               ..++.++|.++
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666667777777777777777777666666665               34444444444


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  190 (687)
                      ..+|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444444444444444444444444444444444444444444444433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.49  E-value=3.7e-13  Score=114.02  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      |.++..++.+|.+++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC
Q 005632          145 FYVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                      ++...|++++|+..|+++++..|+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            444444444444444444444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.49  E-value=1.1e-10  Score=120.98  Aligned_cols=363  Identities=13%  Similarity=0.054  Sum_probs=251.9

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-hHHHHHHHHHHhcc---CCCCHHHHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGN-HKSAFDFYVIAAHL---SPKDSALWKQ  107 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~  107 (687)
                      ..+...+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++..   +|.+...|..
T Consensus        12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~   90 (493)
T 2uy1_A           12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE   90 (493)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence            4677888889889988999999999999999888 77788887777777663 45567788888764   6788899988


Q ss_pred             HHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-------------HHcCCHHHHHHHHHHHHHhCCC-
Q 005632          108 LLTFAV----QKGDTAQAMYYIRQAIRAEPKDISLR-IHLASFY-------------VEIGDYEKAAESYEQIQKLFPD-  168 (687)
Q Consensus       108 la~~~~----~~g~~~~A~~~~~~a~~~~p~~~~~~-~~la~~~-------------~~~g~~~~A~~~~~~~~~~~p~-  168 (687)
                      ....+.    ..|+.+.+...|++++..-+.+..-+ ......-             ...+.+..|...|+.+....+. 
T Consensus        91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~  170 (493)
T 2uy1_A           91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW  170 (493)
T ss_dssp             HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence            887754    34678899999999999533333222 2111111             1123344455555555544332 


Q ss_pred             CHHHHHHHHHHHHHc--CC-----hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC
Q 005632          169 NVDATKTGAQLFLKC--GQ-----TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE  241 (687)
Q Consensus       169 ~~~~~~~la~~~~~~--g~-----~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  241 (687)
                      +...|......-...  |-     .+.....|++++...|..+.  +|...+..+...|+.++|...|++++.. |.+  
T Consensus       171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~--lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~--  245 (493)
T 2uy1_A          171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE--VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG--  245 (493)
T ss_dssp             SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS--
T ss_pred             cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc--
Confidence            344555544443221  11     34567899999999998864  7999999999999999999999999988 422  


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC
Q 005632          242 LPLKLKVKAGICYLRLGNMEKAEILFADLQW---------KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD  312 (687)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  312 (687)
                        ..+++..+..    .+.++....+.....         ..+.....+|...+......++.+.|..+|+++ .. .+.
T Consensus       246 --~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~  317 (493)
T 2uy1_A          246 --MFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGV  317 (493)
T ss_dssp             --SHHHHHHHHH----TTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCC
T ss_pred             --HHHHHHHHhh----cchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCC
Confidence              2233332222    111111111111110         012224567888888888888999999999999 43 334


Q ss_pred             cHHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhh
Q 005632          313 NGYLYLKLAECYLSLK-ERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWW  391 (687)
Q Consensus       313 ~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  391 (687)
                      ....|...|.+....+ +.+.|...|+.+++..|+.++.+...+......|+.+.|..+|+++..    .          
T Consensus       318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~----------  383 (493)
T 2uy1_A          318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----T----------  383 (493)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----B----------
T ss_pred             ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----H----------
Confidence            6677777787777777 599999999999999999999888889999999999999999999832    1          


Q ss_pred             hhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          392 LNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       392 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                        ..++......-...|+.+.+.+.+.+.++..
T Consensus       384 --~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~  414 (493)
T 2uy1_A          384 --SRMWDSMIEYEFMVGSMELFRELVDQKMDAI  414 (493)
T ss_dssp             --HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence              1355666666677799988888888887643

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.49  E-value=1.8e-13  Score=114.71  Aligned_cols=116  Identities=15%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..++..|..++..|+|++|+..|+++++.+|+++..                      .++...|.+..+|.++|.++
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al   67 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEAL   67 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHH
Confidence            45667888888888888888888888888888874332                      01111222333555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          113 VQKGDTAQAMYYIRQAIRA-------EPKDISLR----IHLASFYVEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      ..+|++++|+..|++++++       +|++..+|    +++|.++..+|++++|+..|+++++++|++.
T Consensus        68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            5555555555555555555       66666666    6666666666666666666666666665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.48  E-value=2.6e-13  Score=111.59  Aligned_cols=100  Identities=19%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      .++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            35556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCC
Q 005632          150 GDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~  169 (687)
                      |++++|+..|+++++.+|++
T Consensus        99 g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHhCcCC
Confidence            66666666666666665554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.48  E-value=1.5e-12  Score=106.78  Aligned_cols=112  Identities=15%  Similarity=0.199  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666666666666666666665556666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      ..|++++|+..++++++.+|+++.++..++.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            66666666666666666666555555555544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.48  E-value=2.9e-13  Score=118.38  Aligned_cols=114  Identities=8%  Similarity=0.074  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632           32 PGVTKMLGEASLQYAYGNFEQAISLLKEVVRL------------------SPNLPETYNTLGLAHSALGNHKSAFDFYVI   93 (687)
Q Consensus        32 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   93 (687)
                      ..+..+...|..++..|+|++|+..|++++..                  +|.++.+++.+|.++...|++++|+..+++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45677888899999999999999999999887                  444445555555555555555555555555


Q ss_pred             HhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Q 005632           94 AAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-SLRIHLASF  145 (687)
Q Consensus        94 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~  145 (687)
                      ++.++|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555 334344433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.47  E-value=1.8e-12  Score=106.19  Aligned_cols=114  Identities=18%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      .+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLF  180 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  180 (687)
                      ...|++++|+..++++++.+|+++.++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            7777777777777777777777777777666653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.47  E-value=3.2e-13  Score=113.17  Aligned_cols=115  Identities=12%  Similarity=0.007  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..+..+|..++..|++++|+..|+++++++|+++..                      .++...|.+..+|.++|.++..
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~----------------------~a~~~~~~~a~a~~n~g~al~~   69 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE----------------------EAFDHAGFDAFCHAGLAEALAG   69 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT----------------------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch----------------------hhhhhccchHHHHHHHHHHHHH
Confidence            445555666666666666666666666665554321                      0011112234499999999999


Q ss_pred             cCCHHHHHHHHHHHHHh-------CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc
Q 005632          149 IGDYEKAAESYEQIQKL-------FPDNVDAT----KTGAQLFLKCGQTARSIGILEEYLKVHPSDAD  205 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  205 (687)
                      +|++++|+..|++++++       +|++..+|    +++|.++..+|++++|+..|+++++++|++..
T Consensus        70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            99999999999999999       99999999    99999999999999999999999999998875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.46  E-value=1.1e-13  Score=142.93  Aligned_cols=152  Identities=15%  Similarity=0.145  Sum_probs=135.1

Q ss_pred             HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 005632           80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---------------ISLRIHLAS  144 (687)
Q Consensus        80 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~  144 (687)
                      ..+++++|+..|+.++...|.....+..+|.+++..|++++|+..|++++..+|.+               ..++.++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            44567788888888888889999999999999999999999999999999999998               689999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH
Q 005632          145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK  224 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~  224 (687)
                      ++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..  ++..++.++...+++++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~--a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA--ARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999987  78899999999999988


Q ss_pred             HHHH-HHHHH
Q 005632          225 TLQH-IEHAQ  233 (687)
Q Consensus       225 A~~~-~~~~~  233 (687)
                      +... +.+++
T Consensus       404 a~~~~~~~~f  413 (457)
T 1kt0_A          404 RDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            7753 44443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.46  E-value=6.4e-13  Score=121.27  Aligned_cols=157  Identities=11%  Similarity=0.058  Sum_probs=101.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHcCC
Q 005632           44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAH------LSPKDSALWKQLLTFAVQKGD  117 (687)
Q Consensus        44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~  117 (687)
                      ++..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++.      ..|....++..+|.++...|+
T Consensus         2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            35678888888855544332235677788888888888888888888888877      334455667777777777777


Q ss_pred             HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcC
Q 005632          118 TAQAMYYIRQAIRA---EPKD----ISLRIHLASFYVEIGDYEKAAESYEQIQKLFP--DN----VDATKTGAQLFLKCG  184 (687)
Q Consensus       118 ~~~A~~~~~~a~~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~~la~~~~~~g  184 (687)
                      +++|+.++++++..   .+++    ..++..+|.++...|++++|+..+++++...+  .+    ..++..+|.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777777777775   3322    34566777777777777777777777765422  11    123456666666666


Q ss_pred             ChHHHHHHHHHHHHhC
Q 005632          185 QTARSIGILEEYLKVH  200 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~  200 (687)
                      ++++|+..+++++...
T Consensus       162 ~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          162 NLLEAQQHWLRARDIF  177 (203)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            6666666666666553

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.46  E-value=3.3e-12  Score=105.85  Aligned_cols=118  Identities=23%  Similarity=0.428  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      ....++..|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++..+..+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            36678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG  150 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g  150 (687)
                      ...|++++|+..+++++..+|+++.++..++.++...|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999987654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.46  E-value=4.5e-13  Score=130.10  Aligned_cols=170  Identities=15%  Similarity=0.176  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS------LRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------VDA  172 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~  172 (687)
                      +...+..+...|++++|+..+++++...+..+.      .+..+|.++...|++++|+..|++++...+..      ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            445577889999999999999999998877665      33458999999999999999999999965442      347


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCC--cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC--CCchHH
Q 005632          173 TKTGAQLFLKCGQTARSIGILEEYLKV---HPSDA--DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KELPLK  245 (687)
Q Consensus       173 ~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~  245 (687)
                      +..+|.+|...|++++|+.+|+++++.   .|.+.  ...+++++|.+|...|++++|+.++++++......  ......
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            899999999999999999999999963   22222  22478999999999999999999999999885432  234478


Q ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHhhhC
Q 005632          246 LKVKAGICYLRLGN-MEKAEILFADLQWKN  274 (687)
Q Consensus       246 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~  274 (687)
                      +++.+|.++...|+ +++|+..+++++...
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            99999999999994 699999999987643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.46  E-value=2e-12  Score=109.46  Aligned_cols=106  Identities=15%  Similarity=0.053  Sum_probs=99.2

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           97 LSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG  176 (687)
Q Consensus        97 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  176 (687)
                      .+|.++..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+
T Consensus         4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   83 (137)
T 3q49_B            4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL   83 (137)
T ss_dssp             --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632          177 AQLFLKCGQTARSIGILEEYLKVHPS  202 (687)
Q Consensus       177 a~~~~~~g~~~~A~~~~~~~~~~~p~  202 (687)
                      |.++...|++++|+..|++++...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            99999999999999999999998877

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.45  E-value=6.5e-13  Score=116.16  Aligned_cols=117  Identities=15%  Similarity=0.093  Sum_probs=93.3

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhcc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHL------------------SPKDSALWKQLLTFAVQKGDTAQAMYYIRQA  128 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  128 (687)
                      .+..+..+|..++..|++++|+..|.+++..                  +|....++..+|.++...|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4567889999999999999999999999988                  5566677788888888888888888888888


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q 005632          129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV-DATKTGAQLFLKC  183 (687)
Q Consensus       129 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~la~~~~~~  183 (687)
                      +.++|+++.+++.+|.++...|++++|+..|++++.++|+++ .+...++.+....
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888777 5555565555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.45  E-value=3.4e-12  Score=106.69  Aligned_cols=109  Identities=17%  Similarity=0.111  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHH
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLT  110 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  110 (687)
                      ++..|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            45556666666666666666666666666655   566666666666666666666666666666666   556666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      ++...|++++|+..|++++..+|+++.+......+
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            66666666666666666666666665554444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.8e-12  Score=110.12  Aligned_cols=116  Identities=15%  Similarity=0.133  Sum_probs=87.2

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      +.....++..|..++..|++++|+..|++++..+|++   ..+++.+|.++...|++++|+..+++++..+|+++.++..
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            4566777777888888888888888888888877776   6777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      +|.++...|++++|+.+|++++..+|++..++..++.+.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            777777777777777777777777777777766666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.44  E-value=3.2e-12  Score=106.87  Aligned_cols=114  Identities=14%  Similarity=0.084  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS---ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD---ISLRIHL  142 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l  142 (687)
                      .+++.+|.+++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            4567778888888888888888888888777776   677788888888888888888888888888777   7778888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      |.++...|++++|+..|++++...|+++.+......+...
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            8888888888888888888888888777666555544433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=3.5e-12  Score=109.51  Aligned_cols=120  Identities=15%  Similarity=0.097  Sum_probs=114.0

Q ss_pred             hCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632           63 LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR  139 (687)
Q Consensus        63 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  139 (687)
                      .+|.+...++.+|.+++..|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            467889999999999999999999999999999999987   88999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          140 IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       140 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      +.+|.++...|++++|+..|+++++.+|++..++..++.+...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999888877543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.43  E-value=4.4e-12  Score=115.65  Aligned_cols=157  Identities=12%  Similarity=0.014  Sum_probs=108.9

Q ss_pred             HHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCH
Q 005632           79 SALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA------EPKDISLRIHLASFYVEIGDY  152 (687)
Q Consensus        79 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~g~~  152 (687)
                      +..|++++|...++......+....++..+|.++...|++++|+.++++++..      .|....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45788888888555544433356777888888888888888888888888873      333456677888888888888


Q ss_pred             HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcch
Q 005632          153 EKAAESYEQIQKL---FPDN----VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD----LSVIDLLVAILMENNA  221 (687)
Q Consensus       153 ~~A~~~~~~~~~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~la~~~~~~~~  221 (687)
                      ++|+..+++++..   .+++    ..++..+|.++...|++++|+..+++++...+....    ..++..+|.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8888888888776   3322    355777788888888888888888887765332221    1235677777777888


Q ss_pred             HHHHHHHHHHHHHH
Q 005632          222 YEKTLQHIEHAQIV  235 (687)
Q Consensus       222 ~~~A~~~~~~~~~~  235 (687)
                      +++|+.++++++..
T Consensus       163 ~~~A~~~~~~al~~  176 (203)
T 3gw4_A          163 LLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888777777766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.43  E-value=3.5e-12  Score=134.32  Aligned_cols=174  Identities=10%  Similarity=0.081  Sum_probs=160.8

Q ss_pred             ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q 005632           83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD----------TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG--  150 (687)
Q Consensus        83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g--  150 (687)
                      ..++|+..+.+++..+|++..+|...+.++...|+          +++++..+++++..+|++..+|...+.++...|  
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            34688999999999999999999999999999988          999999999999999999999999999999999  


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc----------
Q 005632          151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG-QTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN----------  219 (687)
Q Consensus       151 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~----------  219 (687)
                      +++++++.+.++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..  +|+.++.++...          
T Consensus       124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s--aW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH--HHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc--HHHHHHHHHHhhcccccccccc
Confidence            7799999999999999999999999999999999 999999999999999999886  799999988874          


Q ss_pred             ----chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHH
Q 005632          220 ----NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEK  262 (687)
Q Consensus       220 ----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  262 (687)
                          +.++++++++.+++..    .|.+..+|+.++.++...+.+++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~----~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHH----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccHHHHHHHHHHHHHHHhh----CCCCccHHHHHHHHHhcCCCccc
Confidence                6789999999999998    78888888888888888777554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.42  E-value=4e-11  Score=123.85  Aligned_cols=200  Identities=14%  Similarity=0.113  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-----------------HHHHHHHHHHHcCChHHHHHHHHHHhccC
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPE-----------------TYNTLGLAHSALGNHKSAFDFYVIAAHLS   98 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~   98 (687)
                      ..+.+|..+...|+|++|++.|.++++..|....                 ++..+|.+|...|++++|.+++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999998886433                 47778888888888888888888777654


Q ss_pred             CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           99 PKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAE------PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF  166 (687)
Q Consensus        99 p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  166 (687)
                      +...      .+...++.++...|++++|+.++++++...      +....++..+|.++...|++.+|+..+++++...
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~  165 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF  165 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            3321      234456666677777888888777776642      2224567777777777777777777777776542


Q ss_pred             ------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-----HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          167 ------PDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-----LSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       167 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                            +....++..++.+|...|++++|...+++++...+....     ...+..+|.++...|++++|..+|.+++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                  223456777777777777777777777777665332211     234556666777777777777777777665

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.39  E-value=2e-12  Score=104.80  Aligned_cols=104  Identities=17%  Similarity=0.154  Sum_probs=50.0

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK--DISLRIHL  142 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l  142 (687)
                      |+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.  +..++..+
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4444444444444444444444444444444444444444444444444444444444444444444444  44444444


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHHhCCC
Q 005632          143 ASFYVEI-GDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus       143 a~~~~~~-g~~~~A~~~~~~~~~~~p~  168 (687)
                      |.++... |++++|++++++++...|.
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            4444444 4444444444444444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.39  E-value=2.9e-12  Score=103.87  Aligned_cols=107  Identities=13%  Similarity=0.170  Sum_probs=99.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 005632           98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--NVDATKT  175 (687)
Q Consensus        98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~  175 (687)
                      +|++...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            57888889999999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHc-CChHHHHHHHHHHHHhCCCCC
Q 005632          176 GAQLFLKC-GQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       176 la~~~~~~-g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      +|.++... |++++|+..+++++...|.++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999988764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.39  E-value=6.3e-13  Score=131.34  Aligned_cols=156  Identities=10%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..+..+|..++..|+|++|+..|++++...|++..        +...|++.++...+.         ..++..+|.++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~  240 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence            4556677788888888888888888888888876541        122333444433321         13678888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL-FLKCGQTARSIG  191 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~-~~~~g~~~~A~~  191 (687)
                      ...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..+++..
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888877 444566777888


Q ss_pred             HHHHHHHhCCCCCc
Q 005632          192 ILEEYLKVHPSDAD  205 (687)
Q Consensus       192 ~~~~~~~~~p~~~~  205 (687)
                      .|.+++...|.+..
T Consensus       321 ~~~~~l~~~p~~~~  334 (338)
T 2if4_A          321 MYKGIFKGKDEGGA  334 (338)
T ss_dssp             --------------
T ss_pred             HHHHhhCCCCCCCC
Confidence            88888888777653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.38  E-value=3.9e-12  Score=106.47  Aligned_cols=98  Identities=9%  Similarity=0.111  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-------HHHHHHH
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-------SALWKQL  108 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l  108 (687)
                      .++..|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+       ..++..+
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444444444444444444444333       3344444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632          109 LTFAVQKGDTAQAMYYIRQAIRAEP  133 (687)
Q Consensus       109 a~~~~~~g~~~~A~~~~~~a~~~~p  133 (687)
                      |.++...|++++|+.+|++++...|
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCC
Confidence            4444444444444444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.38  E-value=1.5e-13  Score=142.48  Aligned_cols=127  Identities=20%  Similarity=0.188  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      +..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|.++.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44556667777777777777777777777777777777778888888888888888888888888877778888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQL--FLKCGQTARSIGILE  194 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~  194 (687)
                      .+|++++|+..|+++++.+|++..++..++.+  +...|++++|+..++
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888888888888888888777777777777  777788888888877

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.38  E-value=4.2e-13  Score=132.60  Aligned_cols=153  Identities=14%  Similarity=0.085  Sum_probs=97.7

Q ss_pred             CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           65 PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        65 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      +..+..+..+|.+++..|++++|+..|++++...|++..        +...|++.++...+.         ..++.++|.
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~  238 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHH
Confidence            445667888888888888999999988888888876541        223444455443332         137899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHH-HHHcchHH
Q 005632          145 FYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI-LMENNAYE  223 (687)
Q Consensus       145 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~-~~~~~~~~  223 (687)
                      ++...|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|++..  ++..++.+ ....+..+
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~--a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA--IRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999876  67788887 44567788


Q ss_pred             HHHHHHHHHHHHh
Q 005632          224 KTLQHIEHAQIVR  236 (687)
Q Consensus       224 ~A~~~~~~~~~~~  236 (687)
                      ++...|.+++...
T Consensus       317 ~a~~~~~~~l~~~  329 (338)
T 2if4_A          317 KQKEMYKGIFKGK  329 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHHhhCCC
Confidence            8999999999883

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.38  E-value=6.8e-12  Score=104.98  Aligned_cols=119  Identities=16%  Similarity=0.142  Sum_probs=110.3

Q ss_pred             CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 005632           66 NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-------ISL  138 (687)
Q Consensus        66 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~  138 (687)
                      ..+..++.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+.++++++...|.+       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999998877       889


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632          139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ  185 (687)
Q Consensus       139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~  185 (687)
                      ++.+|.++...|++++|+..|+++++..| ++.....++.+....++
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 68888888888766543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.37  E-value=1.2e-12  Score=109.36  Aligned_cols=70  Identities=14%  Similarity=0.023  Sum_probs=51.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChH----------HHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           47 YGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHK----------SAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      .+.|++|++.++++++.+|+++++|+.+|.++...++++          +|+..|+++++++|++..+|+.+|.+|...|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            446888888999999999998889988888888887754          6666666666666666666666666665553

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.37  E-value=1.8e-13  Score=141.86  Aligned_cols=135  Identities=16%  Similarity=0.161  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  114 (687)
                      ..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++..
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~   86 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   86 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34556688889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASF--YVEIGDYEKAAESYE-----------QIQKLFPDN  169 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~  169 (687)
                      +|++++|+..|+++++.+|++..++..++.+  +...|++++|++.++           +++...|+.
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999999999999999999988  889999999999999           666666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.36  E-value=2e-12  Score=105.78  Aligned_cols=93  Identities=19%  Similarity=0.223  Sum_probs=53.7

Q ss_pred             cCChHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632           81 LGNHKSAFDFYVIAAHL---SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE  157 (687)
Q Consensus        81 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~  157 (687)
                      .|++++|+..|+++++.   +|+++.++..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            45555566666666655   355555566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCCHHHH
Q 005632          158 SYEQIQKLFPDNVDAT  173 (687)
Q Consensus       158 ~~~~~~~~~p~~~~~~  173 (687)
                      .+++++...|+++.+.
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            6666666666555543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.35  E-value=9.7e-12  Score=124.05  Aligned_cols=140  Identities=14%  Similarity=0.111  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..+..+|..++..|+|++|+..|+++++..|..+                  +..........+|.+..++..+|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777777777777776432211                  001122223355566666666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIG  191 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~  191 (687)
                      ..|++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++++++..
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666667666667777777777777766666666666666666666666666543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.1e-10  Score=120.64  Aligned_cols=206  Identities=13%  Similarity=0.018  Sum_probs=168.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS-----------------ALWKQLLTFAVQKGDTAQAMYYIRQAIR  130 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~a~~  130 (687)
                      |......|..+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|+.++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            56677788999999999999999999998876542                 3578999999999999999999999988


Q ss_pred             hCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632          131 AEPKDI------SLRIHLASFYVEIGDYEKAAESYEQIQKLFP------DNVDATKTGAQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       131 ~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  198 (687)
                      ..+...      .+...++.++...|++++|+.++++++...+      ....++..+|.++...|++++|...+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            655432      3456678888889999999999999987632      2357888999999999999999999999887


Q ss_pred             hCCC----CCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCC-C--chHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          199 VHPS----DADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGK-E--LPLKLKVKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       199 ~~p~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      ....    .....++..++.+|...|++++|...+++++...+... +  .....+..+|.++...|++++|..+|..++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5322    12235788999999999999999999999988743222 2  234667788999999999999999999886


Q ss_pred             hh
Q 005632          272 WK  273 (687)
Q Consensus       272 ~~  273 (687)
                      ..
T Consensus       244 ~~  245 (434)
T 4b4t_Q          244 ES  245 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.34  E-value=1.2e-12  Score=107.24  Aligned_cols=100  Identities=18%  Similarity=0.195  Sum_probs=88.8

Q ss_pred             hcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           46 AYGNFEQAISLLKEVVRL---SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM  122 (687)
Q Consensus        46 ~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  122 (687)
                      ..|++++|+..|+++++.   +|+++.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   58889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHH
Q 005632          123 YYIRQAIRAEPKDISLRIHLASF  145 (687)
Q Consensus       123 ~~~~~a~~~~p~~~~~~~~la~~  145 (687)
                      ..+++++...|+++........+
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999998765444333

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.33  E-value=3.3e-10  Score=117.47  Aligned_cols=335  Identities=9%  Similarity=-0.052  Sum_probs=226.9

Q ss_pred             hcC-CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 005632           46 AYG-NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD-TAQAMY  123 (687)
Q Consensus        46 ~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~  123 (687)
                      ..| +++.|..+|++++...|.               |+++.+...|++++...| +...|..........++ .+....
T Consensus         6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~   69 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE   69 (493)
T ss_dssp             ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred             HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence            456 488999999999999886               889999999999999888 77888888877777663 455677


Q ss_pred             HHHHHHHh---CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-------------HH
Q 005632          124 YIRQAIRA---EPKDISLRIHLASFYV----EIGDYEKAAESYEQIQKLFPDNVDAT-KTGAQLF-------------LK  182 (687)
Q Consensus       124 ~~~~a~~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~-~~la~~~-------------~~  182 (687)
                      .|+.++..   +|.+...|...+..+.    .+|+.+.+...|++++...+.+..-+ ......-             ..
T Consensus        70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~  149 (493)
T 2uy1_A           70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT  149 (493)
T ss_dssp             HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            88888874   6788888888887754    35678899999999999533333222 1111111             11


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-------chHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 005632          183 CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN-------NAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL  255 (687)
Q Consensus       183 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (687)
                      .+.+..|...++.+....+.. ....|......-...       +..+.....|++++..    .|....+|+..+..+.
T Consensus       150 ~~~y~~ar~~y~~~~~~~~~~-s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~  224 (493)
T 2uy1_A          150 LPIFQSSFQRYQQIQPLIRGW-SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAEEVYFFYSEYLI  224 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC-SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHH
Confidence            233445555566555543331 112454444443221       1145577899999998    6777899999999999


Q ss_pred             HcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh-c--------cCCCcHHHHHHHHHHHHH
Q 005632          256 RLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLET-N--------AGTDNGYLYLKLAECYLS  326 (687)
Q Consensus       256 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~~~~~la~~~~~  326 (687)
                      ..|+.+.|..+|++++.. |. ....+...+... +.+   +....+..... .        ..+....+|...+.....
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~-~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r  298 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SD-GMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK  298 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CC-SSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CC-cHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence            999999999999999998 75 555555444331 111   11111111110 0        011234678888888888


Q ss_pred             hhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHH
Q 005632          327 LKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEA-KEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYR  405 (687)
Q Consensus       327 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  405 (687)
                      .++.+.|...|+++ ...+.....+...+.+....| +.+.|..+|+.++...|.++            ..+...+....
T Consensus       299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~------------~~~~~yid~e~  365 (493)
T 2uy1_A          299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST------------LLKEEFFLFLL  365 (493)
T ss_dssp             HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH------------HHHHHHHHHHH
Confidence            99999999999999 433345667777777776666 69999999999998877654            23445567778


Q ss_pred             HcCCchHHHHHHHHH
Q 005632          406 AKGMPEDFVDAIFPL  420 (687)
Q Consensus       406 ~~g~~~~A~~~~~~~  420 (687)
                      ..|+.+.|...|.++
T Consensus       366 ~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          366 RIGDEENARALFKRL  380 (493)
T ss_dssp             HHTCHHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHHHH
Confidence            889999998888876

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.33  E-value=1.4e-11  Score=122.99  Aligned_cols=141  Identities=15%  Similarity=0.170  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      +..+..+|..++..|++++|+..|++++...+..+                  +....+.....+|.+..++.++|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888888888888888888888887654321                  111234444567788899999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHH
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQ  227 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~  227 (687)
                      .+|++++|+.+++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..  ++..++.++...++++++..
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~--~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA--IQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999875  78899999999999988865


Q ss_pred             H
Q 005632          228 H  228 (687)
Q Consensus       228 ~  228 (687)
                      .
T Consensus       363 ~  363 (370)
T 1ihg_A          363 A  363 (370)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.31  E-value=6.2e-12  Score=105.10  Aligned_cols=91  Identities=13%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDT----------AQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        80 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      +.+.+++|+..++++++++|+++++|..+|.++...+++          ++|+..|+++++++|++..+++.+|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            445678888888888888888888888888888877764          4777777777777777777777777777766


Q ss_pred             C-----------CHHHHHHHHHHHHHhCCCCH
Q 005632          150 G-----------DYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       150 g-----------~~~~A~~~~~~~~~~~p~~~  170 (687)
                      |           ++++|+.+|+++++++|++.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            4           56666666666666666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.26  E-value=4.6e-11  Score=104.23  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=12.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRL   63 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~   63 (687)
                      +...|..++..|++++|+..+++++..
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~   38 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLI   38 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            334444444444444444444444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.25  E-value=5.6e-11  Score=103.65  Aligned_cols=136  Identities=16%  Similarity=0.163  Sum_probs=117.7

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS------ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-----  135 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-----  135 (687)
                      ...++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.++++++...+..     
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            356899999999999999999999999998765322      478899999999999999999999999875432     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632          136 -ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS  202 (687)
Q Consensus       136 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  202 (687)
                       ..++..+|.++...|++++|+..+++++...+.      ...++..+|.++...|++++|+..++++++....
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence             567899999999999999999999999987432      2467889999999999999999999999987544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.12  E-value=6.2e-10  Score=90.51  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH  200 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  200 (687)
                      |+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45555555555555555555555555555555555555555555555555555555555555566666666555555555


Q ss_pred             CCCC
Q 005632          201 PSDA  204 (687)
Q Consensus       201 p~~~  204 (687)
                      |...
T Consensus        84 ~~~~   87 (115)
T 2kat_A           84 QSRG   87 (115)
T ss_dssp             HHHT
T ss_pred             cccc
Confidence            5433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.12  E-value=2.7e-10  Score=92.65  Aligned_cols=82  Identities=20%  Similarity=0.144  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632           52 QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA  131 (687)
Q Consensus        52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  131 (687)
                      +|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             CC
Q 005632          132 EP  133 (687)
Q Consensus       132 ~p  133 (687)
                      .|
T Consensus        83 ~~   84 (115)
T 2kat_A           83 AQ   84 (115)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.12  E-value=5.2e-11  Score=96.26  Aligned_cols=94  Identities=15%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC------HHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD------SALWK  106 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~  106 (687)
                      ++..++..|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            445566667777777777777777777777777777777777777777777777777777777777766      66666


Q ss_pred             HHHHHHHHcCCHHHHHHHHH
Q 005632          107 QLLTFAVQKGDTAQAMYYIR  126 (687)
Q Consensus       107 ~la~~~~~~g~~~~A~~~~~  126 (687)
                      .+|.++...|+++.|+..++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            66666666666655554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.10  E-value=4e-10  Score=90.92  Aligned_cols=100  Identities=16%  Similarity=0.091  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC------HHHH
Q 005632          278 HADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN------IDAR  351 (687)
Q Consensus       278 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~  351 (687)
                      ....+..+|.++...|++++|+..|++++.. .|.++.++..+|.++...|++++|+..|+++++++|++      ..++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            5678899999999999999999999999988 89999999999999999999999999999999999999      8899


Q ss_pred             HHHHHHHHHcCCHHHHHHhcCCCCcCC
Q 005632          352 LTLASLLLEEAKEEEAITLLSPPKDLD  378 (687)
Q Consensus       352 ~~la~~~~~~g~~~~A~~~~~~a~~~~  378 (687)
                      ..++.++...|++++|+..+++.....
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~~~~~~  108 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDELPEGY  108 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSSCSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHHhHHHh
Confidence            999999999999999988888765443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.08  E-value=1.2e-09  Score=84.38  Aligned_cols=77  Identities=23%  Similarity=0.431  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      +++.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            33334444444444444444444444433433333444444444444444444444444444443333333333333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.06  E-value=2e-09  Score=83.02  Aligned_cols=85  Identities=26%  Similarity=0.445  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      .+...+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcC
Q 005632          180 FLKCG  184 (687)
Q Consensus       180 ~~~~g  184 (687)
                      +...|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            77654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.00  E-value=1.4e-08  Score=97.42  Aligned_cols=74  Identities=7%  Similarity=-0.089  Sum_probs=45.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          130 RAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       130 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      ..+|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++++.++|...
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            344566666666666666666666666666666666643 44555666666666666666666666666666553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.99  E-value=1.8e-09  Score=84.91  Aligned_cols=72  Identities=19%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          132 EPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       132 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|..
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            344555555555555555555555555555555555555555555555555555555555555555444433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.96  E-value=8.8e-10  Score=86.75  Aligned_cols=90  Identities=21%  Similarity=0.318  Sum_probs=64.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           38 LGEASLQYAYGNFEQAISLLKEVVRLSPNLPE-TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        38 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      +.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|++++.++|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            56677777777777777777777777777777 77777777777777777777777777777777666533        4


Q ss_pred             CHHHHHHHHHHHHHhCCCC
Q 005632          117 DTAQAMYYIRQAIRAEPKD  135 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~  135 (687)
                      .+.+++..|+++...+|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            4556666666666555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.96  E-value=1.5e-08  Score=85.05  Aligned_cols=120  Identities=19%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005632           48 GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAMY  123 (687)
Q Consensus        48 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~  123 (687)
                      +++++|+.+|+++.+...  +.+.  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            467788888888877653  3344  788887777788888888888765  567778888888877    778888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005632          124 YIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGA  177 (687)
Q Consensus       124 ~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la  177 (687)
                      +|+++.+.  .++.+.+.+|.+|..    .+++++|+.+|+++.+.  .++.+...++
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence            88888775  567777888888877    77788888888887776  3445544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.94  E-value=3.3e-09  Score=83.44  Aligned_cols=69  Identities=19%  Similarity=0.168  Sum_probs=38.8

Q ss_pred             CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           64 SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE  132 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  132 (687)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            455555555555555555555555555555555555555555555555555555555555555555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.89  E-value=2.5e-09  Score=84.10  Aligned_cols=67  Identities=15%  Similarity=0.095  Sum_probs=33.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632           73 TLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-LWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR  139 (687)
Q Consensus        73 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  139 (687)
                      ..|.++...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|++++..+|++..++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            3444455555555555555555555555544 555555555555555555555555555555444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.89  E-value=9.7e-09  Score=105.26  Aligned_cols=128  Identities=11%  Similarity=0.039  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCc---hHHHHHHHHHHHHcCChHHHHHHHHHHhcc-----CCCC--
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRL-----SPNL---PETYNTLGLAHSALGNHKSAFDFYVIAAHL-----SPKD--  101 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~--  101 (687)
                      .+..+..+..+|+|++|+.+++++++.     .|++   ...+..+|.+|..+|+|++|+.++++++..     .|++  
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            344555566777777777777777764     2333   345666777777777777777777766654     2333  


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005632          102 -SALWKQLLTFAVQKGDTAQAMYYIRQAIRA-----EPKDIS---LRIHLASFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus       102 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~  164 (687)
                       ...+.+||.+|..+|++++|+.+|++++++     .|+++.   ....++.++..++.+++|...|.++.+
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             334556666666666666666666666652     344432   334555555555556666655555543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.86  E-value=6.8e-08  Score=92.69  Aligned_cols=138  Identities=20%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             ChhHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh----H---HHH-HHHH--HHhcc
Q 005632           31 SPGVTKMLGEASLQYAYGN---FEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH----K---SAF-DFYV--IAAHL   97 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~----~---~A~-~~~~--~al~~   97 (687)
                      ++++..++.+|..++..++   +.+|+.+|+++++.+|+++.++..++.+|.....+    .   .++ ..+.  .++..
T Consensus       193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~  272 (372)
T 3ly7_A          193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE  272 (372)
T ss_dssp             SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence            3444444545555444332   24555555555555555555555555444321100    0   000 0111  11233


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632           98 SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus        98 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      +|.++.++..++..+...|++++|+..+++++.++| +..++..+|.++...|++++|++.|.+++.++|..
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            445555555555555555555555555555555553 23444455555555555555555555555555544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.80  E-value=9.6e-08  Score=80.00  Aligned_cols=111  Identities=18%  Similarity=0.193  Sum_probs=85.1

Q ss_pred             CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 005632           82 GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAE  157 (687)
Q Consensus        82 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~  157 (687)
                      +++++|+.+|+++.+......  .  +|.+|...+..++|+.+|+++.+.  .++.+.+.+|.+|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            467788888888877653333  3  788887777788888888888775  577788888888887    778888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhC
Q 005632          158 SYEQIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEEYLKVH  200 (687)
Q Consensus       158 ~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  200 (687)
                      +|+++.+.  .++.+.+.+|.+|..    .+++++|+.+|+++.+..
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            88888776  567788888888887    778888888888877763

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.76  E-value=2.4e-07  Score=84.91  Aligned_cols=174  Identities=11%  Similarity=0.101  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC---------------------ChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632           51 EQAISLLKEVVRLSPNLPETYNTLGLAHSALG---------------------NHKSAFDFYVIAAHLSPKDSALWKQLL  109 (687)
Q Consensus        51 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~la  109 (687)
                      .-.+.+++-++..+|++...+...|..|..-+                     ++..|...|.++..        |...+
T Consensus        49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~--------y~~ra  120 (301)
T 3u64_A           49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR--------YALSS  120 (301)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred             cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH--------HHHHH
Confidence            44567788888999999887776666554321                     13344555554432        11111


Q ss_pred             HHHHHcCCHHHHHH-----HHHHHH-HhCCCCHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHHhCCC--CH
Q 005632          110 TFAVQKGDTAQAMY-----YIRQAI-RAEPKDISLRIHLASFYVE-----IG------DYEKAAESYEQIQKLFPD--NV  170 (687)
Q Consensus       110 ~~~~~~g~~~~A~~-----~~~~a~-~~~p~~~~~~~~la~~~~~-----~g------~~~~A~~~~~~~~~~~p~--~~  170 (687)
                       +......+.+++.     -+..++ ..+|+++++++..|.+...     .|      ....|...++++++++|+  +.
T Consensus       121 -L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G  199 (301)
T 3u64_A          121 -LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG  199 (301)
T ss_dssp             -HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             -HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence             1111223332222     122333 3567888888877776643     12      357889999999999998  56


Q ss_pred             HHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHc-chHHHHHHHHHHHHHH
Q 005632          171 DATKTGAQLFLKC-----GQTARSIGILEEYLKVHPSD-ADLSVIDLLVAILMEN-NAYEKTLQHIEHAQIV  235 (687)
Q Consensus       171 ~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~  235 (687)
                      .++..+|.+|...     |+.++|..+|+++++++|+. ..  +++..|..++.. |+++++..++++++..
T Consensus       200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id--~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD--HHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH--HHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            7999999999885     99999999999999999975 65  677889988884 9999999999999987

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.74  E-value=1.5e-07  Score=96.44  Aligned_cols=132  Identities=10%  Similarity=-0.059  Sum_probs=97.5

Q ss_pred             HHHHHHcchHHHHHHHHHHHHHH----hccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-------chhhHHH
Q 005632          213 VAILMENNAYEKTLQHIEHAQIV----RFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-------AIDHADL  281 (687)
Q Consensus       213 a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~  281 (687)
                      +..+..+|+|++|+..+++++..    ++++++....++.++|.+|..+|++++|+.++++++...       .++....
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34466788888888888888876    345666777788888888888888888888888765421       1235566


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhc-------cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhc
Q 005632          282 ITEVADTLMSLGHSNSALKYYHFLETN-------AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRF  344 (687)
Q Consensus       282 ~~~la~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  344 (687)
                      +.++|.+|..+|++++|+.+|++++..       .+|....+...++.++..++.+++|...|.++.+..
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888888877654       133445566778888888888888888888876544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.67  E-value=5.5e-07  Score=93.22  Aligned_cols=162  Identities=6%  Similarity=-0.057  Sum_probs=76.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcC---------ChHHHHHHHHHhhhccCCCcHHHHHHHH
Q 005632          251 GICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLG---------HSNSALKYYHFLETNAGTDNGYLYLKLA  321 (687)
Q Consensus       251 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~~~~~~~~~~~~la  321 (687)
                      ...+.+.|+.++|+.+|+++....-..+...|..+..++...+         ..++|.++|+++....-..+..+|..+.
T Consensus        33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI  112 (501)
T 4g26_A           33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA  112 (501)
T ss_dssp             HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            3444444555555555554443322223344444444443322         2345555555554443344455555555


Q ss_pred             HHHHHhhcHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHH
Q 005632          322 ECYLSLKERAHAIMFFYKALDRF-EDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKL  400 (687)
Q Consensus       322 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  400 (687)
                      ..|.+.|++++|..+|++..+.. +-+...+..+...+.+.|+.++|.++++.+.+.....           +..++..+
T Consensus       113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-----------d~~ty~~L  181 (501)
T 4g26_A          113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-----------EEPELAAL  181 (501)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-----------CHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHH
Confidence            55555555555555555554431 1234445555555555555555555555444322111           12355555


Q ss_pred             HHHHHHcCCchHHHHHHHHHHHH
Q 005632          401 CHIYRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       401 a~~~~~~g~~~~A~~~~~~~~~~  423 (687)
                      ..+|.+.|+.++|.+.+.++-+.
T Consensus       182 i~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          182 LKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHh
Confidence            55555555555555555555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.67  E-value=1.3e-07  Score=72.19  Aligned_cols=71  Identities=8%  Similarity=-0.070  Sum_probs=40.1

Q ss_pred             CCCchHHHHHHHHHHHHcCC---hHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632           64 SPNLPETYNTLGLAHSALGN---HKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPK  134 (687)
Q Consensus        64 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  134 (687)
                      +|++++.+..+|.+++..++   .++|...+++++..+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35555555555555554443   455555555555555555555555555555555555555555555555554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.62  E-value=4.6e-06  Score=86.27  Aligned_cols=163  Identities=10%  Similarity=0.040  Sum_probs=76.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhCCCCCcHHHHHH
Q 005632          142 LASFYVEIGDYEKAAESYEQIQKLF-PDNVDATKTGAQLFLKCGQ---------TARSIGILEEYLKVHPSDADLSVIDL  211 (687)
Q Consensus       142 la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~~~~~p~~~~~~~~~~  211 (687)
                      +...+.+.|+.++|++.|+++.+.. +.+...+..+..++...+.         .++|..+|+++....- .++..++..
T Consensus        32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~-~Pd~~tyn~  110 (501)
T 4g26_A           32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV-VPNEATFTN  110 (501)
T ss_dssp             HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-CCCHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence            3344445555555555555554431 1133334334333333222         3445555555444321 111124555


Q ss_pred             HHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHh
Q 005632          212 LVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMS  291 (687)
Q Consensus       212 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~  291 (687)
                      +...+.+.|++++|..+|+++... +  -..+...+..+...+.+.|+.++|..+|+.+.......+...+..+...+.+
T Consensus       111 lI~~~~~~g~~~~A~~l~~~M~~~-g--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          111 GARLAVAKDDPEMAFDMVKQMKAF-G--IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHT-T--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc-C--CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            555555555555555555554433 1  1223344444555555555555555555555444333344555555555555


Q ss_pred             cCChHHHHHHHHHhhhc
Q 005632          292 LGHSNSALKYYHFLETN  308 (687)
Q Consensus       292 ~g~~~~A~~~~~~~~~~  308 (687)
                      .|+.++|.++++++.+.
T Consensus       188 ~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            55555555555555444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.60  E-value=4.9e-07  Score=69.00  Aligned_cols=73  Identities=14%  Similarity=-0.016  Sum_probs=50.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          132 EPKDISLRIHLASFYVEIGD---YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       132 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      +|++++.+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+..++++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            46667777777777665554   56777777777777777777777777777777777777777777777766643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.57  E-value=6.5e-07  Score=73.81  Aligned_cols=92  Identities=8%  Similarity=-0.020  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC---ChHHHHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632           50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSALG---NHKSAFDFYVIAAHLS-P-KDSALWKQLLTFAVQKGDTAQAMYY  124 (687)
Q Consensus        50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~  124 (687)
                      ...+.+.|.+.+..+|.+.++.+.+|+++.+.+   +.++++..++.+++.+ | ...+.++.+|..+++.|+|++|..+
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            345556666666666667777777777777766   5557777777777766 5 4566777777777777777777777


Q ss_pred             HHHHHHhCCCCHHHHHH
Q 005632          125 IRQAIRAEPKDISLRIH  141 (687)
Q Consensus       125 ~~~a~~~~p~~~~~~~~  141 (687)
                      ++++++..|++..+...
T Consensus        94 ~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHCTTCHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHH
Confidence            77777777777665444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.57  E-value=2.1e-06  Score=78.72  Aligned_cols=178  Identities=10%  Similarity=0.004  Sum_probs=124.2

Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632           86 SAFDFYVIAAHLSPKDSALWKQLLTFAVQKG---------------------DTAQAMYYIRQAIRAEPKDISLRIHLAS  144 (687)
Q Consensus        86 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~a~~~~p~~~~~~~~la~  144 (687)
                      -.+..++-.+..+|++.......+..|..-+                     ++..|...|.++...        -..+ 
T Consensus        50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra-  120 (301)
T 3u64_A           50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS-  120 (301)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH-
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH-
Confidence            3456677778889999877665555543221                     233455555554431        1111 


Q ss_pred             HHHHcCCHHHHHH-----HHHH-HHHhCCCCHHHHHHHHHHHHH-----cCC------hHHHHHHHHHHHHhCCCCCcHH
Q 005632          145 FYVEIGDYEKAAE-----SYEQ-IQKLFPDNVDATKTGAQLFLK-----CGQ------TARSIGILEEYLKVHPSDADLS  207 (687)
Q Consensus       145 ~~~~~g~~~~A~~-----~~~~-~~~~~p~~~~~~~~la~~~~~-----~g~------~~~A~~~~~~~~~~~p~~~~~~  207 (687)
                      +......+.+++.     -+.. +-+.+|++++.++..|.+...     .|.      ...|...++++++++|+.....
T Consensus       121 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~Gs  200 (301)
T 3u64_A          121 LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGA  200 (301)
T ss_dssp             HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCH
Confidence            1111223332222     1222 234578888888888776643     133      5789999999999999965555


Q ss_pred             HHHHHHHHHHHc-----chHHHHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHHc-CCHHHHHHHHHHHhhhCch
Q 005632          208 VIDLLVAILMEN-----NAYEKTLQHIEHAQIVRFSGKELP-LKLKVKAGICYLRL-GNMEKAEILFADLQWKNAI  276 (687)
Q Consensus       208 ~~~~la~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~  276 (687)
                      +|..+|.+|...     |+.++|..+|++++++    +|.. ...++..|..+... |+++++..++++++...|.
T Consensus       201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L----nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY----CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH----CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            899999999995     9999999999999999    7764 88999999999884 9999999999999987764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.50  E-value=1.2e-06  Score=72.28  Aligned_cols=89  Identities=12%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005632           86 SAFDFYVIAAHLSPKDSALWKQLLTFAVQKG---DTAQAMYYIRQAIRAE-P-KDISLRIHLASFYVEIGDYEKAAESYE  160 (687)
Q Consensus        86 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~  160 (687)
                      .+.+.|.+.+..+|.+.++.+.+|.++.+.+   +.++++..++.+++.+ | +..+.++.+|..+.+.|+|++|..+++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4444555555555555666666666666655   4446666666666655 4 345566666666666666666666666


Q ss_pred             HHHHhCCCCHHHHH
Q 005632          161 QIQKLFPDNVDATK  174 (687)
Q Consensus       161 ~~~~~~p~~~~~~~  174 (687)
                      ++++..|++..+..
T Consensus        96 ~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           96 GLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHCTTCHHHHH
T ss_pred             HHHhcCCCCHHHHH
Confidence            66666666555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.42  E-value=2.4e-06  Score=67.18  Aligned_cols=76  Identities=12%  Similarity=0.114  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLS-------PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK  106 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  106 (687)
                      +...+..|..++..|+|..|+..|+++++..       +..+.++..+|.+++..|+++.|+..+++++.+.|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4455666666666667777776666666542       224455556666666666666666666666666665555544


Q ss_pred             HHH
Q 005632          107 QLL  109 (687)
Q Consensus       107 ~la  109 (687)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.39  E-value=2.4e-06  Score=86.06  Aligned_cols=84  Identities=8%  Similarity=0.042  Sum_probs=37.4

Q ss_pred             cCCHHHHHHHHHHHHHh-----CCCch---HHHHHHHHHHHHcCChHHHHHHHHHHhcc-----CCCC---HHHHHHHHH
Q 005632           47 YGNFEQAISLLKEVVRL-----SPNLP---ETYNTLGLAHSALGNHKSAFDFYVIAAHL-----SPKD---SALWKQLLT  110 (687)
Q Consensus        47 ~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~  110 (687)
                      .|+|++|+.++++++++     .|+++   ..+..+|.+|..+|+|++|+.++++++..     .|++   ...+.++|.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            34455555555555442     22222   23444455555555555555555544432     1222   223444444


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIR  130 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~  130 (687)
                      +|..+|++++|+.+|+++++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            44444444444444444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.37  E-value=3.6e-06  Score=66.17  Aligned_cols=76  Identities=14%  Similarity=0.098  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLS-------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI  140 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  140 (687)
                      +.-.+.+|..++..|+|..|+.+|++++...       +....++..+|.++...|+++.|+.++++++...|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4455666777777777777777777666542       233455566666666666666666666666666666655554


Q ss_pred             HHH
Q 005632          141 HLA  143 (687)
Q Consensus       141 ~la  143 (687)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.28  E-value=5.6e-06  Score=83.58  Aligned_cols=85  Identities=7%  Similarity=0.085  Sum_probs=43.6

Q ss_pred             HcCChHHHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 005632           80 ALGNHKSAFDFYVIAAHL-----SPKD---SALWKQLLTFAVQKGDTAQAMYYIRQAIRA-----EPKDI---SLRIHLA  143 (687)
Q Consensus        80 ~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~la  143 (687)
                      .+|++++|+..++++++.     .|++   ...+..+|.+|..+|+|++|+.++++++..     .|+++   ..+.++|
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            445555555555555533     1222   233445555555555555555555555542     23333   2355555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH
Q 005632          144 SFYVEIGDYEKAAESYEQIQK  164 (687)
Q Consensus       144 ~~~~~~g~~~~A~~~~~~~~~  164 (687)
                      .+|..+|++++|+.+|+++++
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHH
Confidence            666666666666666655554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.17  E-value=1.7e-05  Score=80.14  Aligned_cols=109  Identities=8%  Similarity=0.006  Sum_probs=60.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCCcH-HHHHH
Q 005632          146 YVEIGDYEKAAESYEQIQKL-----FPDNV---DATKTGAQLFLKCGQTARSIGILEEYLKV-----HPSDADL-SVIDL  211 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~-~~~~~  211 (687)
                      +..+|++++|+..++++++.     .|+++   .++.++|.+|..+|+|++|+.++++++..     .|+++.. ..+++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44556666666666666653     23333   34556666666666666666666666643     2333321 23556


Q ss_pred             HHHHHHHcchHHHHHHHHHHHHHHh----ccCCCchHHHHHHHHHHH
Q 005632          212 LVAILMENNAYEKTLQHIEHAQIVR----FSGKELPLKLKVKAGICY  254 (687)
Q Consensus       212 la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~  254 (687)
                      +|.+|..+|++++|+.++++++.+.    ++++|....+...++.+.
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            6666666666666666666666552    344444444444444433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.16  E-value=8.4e-06  Score=82.08  Aligned_cols=94  Identities=10%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             HcCChHHHHHHHHHHhcc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 005632           80 ALGNHKSAFDFYVIAAHL-----SPKDS---ALWKQLLTFAVQKGDTAQAMYYIRQAIRA-----EPKDI---SLRIHLA  143 (687)
Q Consensus        80 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~---~~~~~la  143 (687)
                      ..|+|++|+..+++++++     .|+++   ..+.++|.+|..+|+|++|+.++++++..     .|+++   ..+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457899999999988864     35544   55778888899999999999999988874     34554   4577888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 005632          144 SFYVEIGDYEKAAESYEQIQKL-----FPDNVDAT  173 (687)
Q Consensus       144 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~  173 (687)
                      .+|..+|++++|+.+|++++++     .|+++.+.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            8888888888888888888875     46666543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.04  E-value=9.1e-05  Score=58.58  Aligned_cols=94  Identities=7%  Similarity=-0.026  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHH---HHHHHHHHhccC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 005632           49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKS---AFDFYVIAAHLS-P-KDSALWKQLLTFAVQKGDTAQAMY  123 (687)
Q Consensus        49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~  123 (687)
                      ....+...|.+.+..++...++.+.+|+++.+..+...   ++.+++..+..+ | ...+.++.+|..+++.|+|++|..
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            44566666777777677777888888888887776665   777887777765 4 455677777777777777777777


Q ss_pred             HHHHHHHhCCCCHHHHHHH
Q 005632          124 YIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus       124 ~~~~a~~~~p~~~~~~~~l  142 (687)
                      +++.+++..|++..+....
T Consensus        96 ~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHH
Confidence            7777777777777665443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.87  E-value=0.00013  Score=57.68  Aligned_cols=87  Identities=11%  Similarity=0.044  Sum_probs=42.1

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632           87 AFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ---AMYYIRQAIRAE-P-KDISLRIHLASFYVEIGDYEKAAESYEQ  161 (687)
Q Consensus        87 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~  161 (687)
                      +...|.+....++....+.+.+|.++....+...   ++..++..+..+ | ..-+.++.+|..+++.|+|++|..+++.
T Consensus        20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~   99 (126)
T 1nzn_A           20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   99 (126)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3344444444444445555555555555444333   555555544443 2 2334455555555555555555555555


Q ss_pred             HHHhCCCCHHHH
Q 005632          162 IQKLFPDNVDAT  173 (687)
Q Consensus       162 ~~~~~p~~~~~~  173 (687)
                      +++..|++..+.
T Consensus       100 lL~~eP~n~QA~  111 (126)
T 1nzn_A          100 LLQTEPQNNQAK  111 (126)
T ss_dssp             HHHHCTTCHHHH
T ss_pred             HHHhCCCCHHHH
Confidence            555555554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.87  E-value=7.7e-05  Score=61.75  Aligned_cols=134  Identities=16%  Similarity=0.092  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------hHHHHHHHHHHHHcCChHHHHHHHHHHhccC---CCC
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNL---------PETYNTLGLAHSALGNHKSAFDFYVIAAHLS---PKD  101 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~  101 (687)
                      ...++.....++..|.|+.|+-....++....++         ..+++.+|..++..|+|..|...|++++...   +..
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            4457888999999999999999999987654322         2378999999999999999999999997653   222


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          102 SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLF  180 (687)
Q Consensus       102 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  180 (687)
                      ......++.    ...+..       ... .+.+.++.+.++.|+...+++.+|+..++.+-.. ...+.+...||.+|
T Consensus       100 ~s~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             ----------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             CCccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence            211111100    000000       011 1345678888888888899988888887764322 24567777777765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.76  E-value=0.00056  Score=55.17  Aligned_cols=53  Identities=13%  Similarity=0.085  Sum_probs=26.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 005632          150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPS  202 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  202 (687)
                      ++.++|.+.|+.+++.......+|...|..-.++|+...|.+.+.+++...|.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            44555555555554444444444555555555555555555555555554444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.62  E-value=0.0016  Score=52.52  Aligned_cols=105  Identities=12%  Similarity=0.067  Sum_probs=48.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhCCCCCc------HHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632          166 FPDNVDATKTGAQLFLKCGQT------ARSIGILEEYLKVHPSDAD------LSVIDLLVAILMENNAYEKTLQHIEHAQ  233 (687)
Q Consensus       166 ~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~p~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~  233 (687)
                      .|++++.|..........|+.      ++-++.|++++..-|....      ..+|...+.. ...++.++|.+.|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            344555555555444444554      4444555555544433211      0122233322 23355555555555555


Q ss_pred             HHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCc
Q 005632          234 IVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  275 (687)
                      ..    ......+|...|....++|+...|..++.+++...|
T Consensus        88 ~~----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           88 AN----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HH----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HH----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            54    222355555555555555555555555555555444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.60  E-value=0.00088  Score=55.50  Aligned_cols=64  Identities=8%  Similarity=0.086  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc-------HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          172 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD-------LSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       172 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      +++.-...++..|.|+.|+-....++....++++       +.++..+|..++..++|..|...|+++++.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            3445555566666677666666665544221111       234566777777777777777777777655

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.27  E-value=0.25  Score=51.80  Aligned_cols=190  Identities=10%  Similarity=-0.005  Sum_probs=104.7

Q ss_pred             HHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhc
Q 005632          213 VAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSL  292 (687)
Q Consensus       213 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~  292 (687)
                      +.......+.+.|...+........-+..........++.-....+...++...+......... .. .....+...+..
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~e~~~r~Alr~  298 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TS-LIERRVRMALGT  298 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HH-HHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hH-HHHHHHHHHHHC
Confidence            3334445577888888877655411111122223333343334445355666666665443332 22 233333344567


Q ss_pred             CChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632          293 GHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS  372 (687)
Q Consensus       293 g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  372 (687)
                      |+++.|..++..+... ....+...+-+|..+...|+.++|..+|+++..  +.+  .+-.++.  .++|..        
T Consensus       299 ~d~~~a~~~~~~l~~~-~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~~~--fYg~lAa--~~Lg~~--------  363 (618)
T 1qsa_A          299 GDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG--FYPMVAA--QRIGEE--------  363 (618)
T ss_dssp             TCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS--HHHHHHH--HHTTCC--------
T ss_pred             CCHHHHHHHHHHcccc-ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--hHHHHHH--HHcCCC--------
Confidence            9999999999776643 345677788899999999999999999998875  332  2222222  223321        


Q ss_pred             CCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632          373 PPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       373 ~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  423 (687)
                        ....+.... ...... .........+..+...|....|...+..+++.
T Consensus       364 --~~~~~~~~~-~~~~~~-~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~  410 (618)
T 1qsa_A          364 --YELKIDKAP-QNVDSA-LTQGPEMARVRELMYWNLDNTARSEWANLVKS  410 (618)
T ss_dssp             --CCCCCCCCC-SCCCCH-HHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --CCCCCCCCC-hhHHhh-hccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence              111110000 000011 11123456677888999999998887777654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.23  E-value=0.0036  Score=49.57  Aligned_cols=73  Identities=7%  Similarity=-0.029  Sum_probs=35.8

Q ss_pred             chHHHHHHHHHHHHcCCh---HHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 005632           67 LPETYNTLGLAHSALGNH---KSAFDFYVIAAHLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLR  139 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  139 (687)
                      .+.+.+.+|+++.+..+.   .+++.+++..+..+|. ..+.++.+|..+.+.|+|++|..+.+.+++..|++..+.
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            344455555555544432   2445555555544442 244455555555555555555555555555555554443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.18  E-value=0.0049  Score=49.52  Aligned_cols=75  Identities=7%  Similarity=-0.040  Sum_probs=45.8

Q ss_pred             chHHHHHHHHHHHHcCCh---HHHHHHHHHHhccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNH---KSAFDFYVIAAHLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH  141 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~  141 (687)
                      .+.+.|.+|+++.+..+.   .+++.+++..+...|. ..+.++.+|..+++.|+|++|..+.+.+++..|++..+...
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            556666666666665543   3566666666665553 44556666666666666666666666666666666555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.03  E-value=0.021  Score=45.88  Aligned_cols=81  Identities=7%  Similarity=-0.011  Sum_probs=58.2

Q ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           99 PKDSALWKQLLTFAVQKGD---TAQAMYYIRQAIRAEPK-DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK  174 (687)
Q Consensus        99 p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  174 (687)
                      ...+.+.+.+|.++....+   ..+++..++..+...|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            3456777777777777764   34677778877777774 4567777888888888888888888888888888776655


Q ss_pred             HHHHH
Q 005632          175 TGAQL  179 (687)
Q Consensus       175 ~la~~  179 (687)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.96  E-value=0.014  Score=46.25  Aligned_cols=74  Identities=8%  Similarity=-0.008  Sum_probs=42.4

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632          101 DSALWKQLLTFAVQKGD---TAQAMYYIRQAIRAEPK-DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATK  174 (687)
Q Consensus       101 ~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  174 (687)
                      .+.+.+.+|.++....+   ..+++..++..+..+|. .-+.++.+|..+.+.|+|++|..+.+.+++..|++..+..
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            34555566666655543   23456666666655552 3455666666666666666666666666666666655443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.17  Score=51.02  Aligned_cols=204  Identities=12%  Similarity=0.079  Sum_probs=106.1

Q ss_pred             CCChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCH
Q 005632           29 KLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVRL------SPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS  102 (687)
Q Consensus        29 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  102 (687)
                      ..++.+...+..+..+ ..|+++.|++.+...-+.      .+....+...+..++...|+++...+.+.-.........
T Consensus        12 D~s~~~~~~~~~~~~l-~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk   90 (445)
T 4b4t_P           12 DYSQILKEEFPKIDSL-AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK   90 (445)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH
T ss_pred             chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH
Confidence            4445666777777765 458899999888655443      233466788888899999999988887765554443333


Q ss_pred             HHHHHHHHHHH----HcCCHHHHHHHHHHHHHh----CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Q 005632          103 ALWKQLLTFAV----QKGDTAQAMYYIRQAIRA----EPK-------DISLRIHLASFYVEIGDYEKAAESYEQIQKL-F  166 (687)
Q Consensus       103 ~~~~~la~~~~----~~g~~~~A~~~~~~a~~~----~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~  166 (687)
                      .+...+.....    .....+.  ......+..    ..+       .......|+.++...|++.+|...+.....- .
T Consensus        91 ~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~  168 (445)
T 4b4t_P           91 LSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY  168 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            33222222111    1111111  111111111    000       1234456777777777777777777776532 1


Q ss_pred             C-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCCc--HHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          167 P-DN----VDATKTGAQLFLKCGQTARSIGILEEYLK---VHPSDAD--LSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       167 p-~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      . .+    .+.+....+++...+++.+|...+.++..   ..+..+.  ...+...|.++...++|.+|-.+|..+...
T Consensus       169 ~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          169 GSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            1 11    35566667777777777777777776532   1222221  123455666777777777777777766654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.69  E-value=0.45  Score=46.55  Aligned_cols=98  Identities=12%  Similarity=0.043  Sum_probs=57.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCC--CC--cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC--CC-chHHHH
Q 005632          175 TGAQLFLKCGQTARSIGILEEYLKVHPS--DA--DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KE-LPLKLK  247 (687)
Q Consensus       175 ~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~-~~~~~~  247 (687)
                      .+|.+|+..|+|.+|...+.++.+.-..  +.  -.+++..-..+|...+++.++...+.++......-  +| ....+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            5677777777777777666666553211  11  12344555666777777777777777766553211  11 233445


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHhh
Q 005632          248 VKAGICYL-RLGNMEKAEILFADLQW  272 (687)
Q Consensus       248 ~~l~~~~~-~~~~~~~A~~~~~~~~~  272 (687)
                      ..-|..+. ..++|..|...|-++..
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            55566666 67777777777666543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.53  E-value=0.3  Score=54.12  Aligned_cols=100  Identities=13%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             HHHHhcCCHHHHHH-HHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           42 SLQYAYGNFEQAIS-LLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        42 ~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      ......+++++|.. ++..    -| +...+..+...+...|.+++|+...+        ++...   .......|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence            34456788888866 4411    11 01222555566667777777775442        22222   233456778887


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632          121 AMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI  162 (687)
Q Consensus       121 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  162 (687)
                      |.+..+.     .+++..|..+|..+...++++.|+.+|.++
T Consensus       671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            7776432     356677778888888888888888777765

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.52  E-value=1  Score=47.23  Aligned_cols=305  Identities=11%  Similarity=0.044  Sum_probs=180.1

Q ss_pred             HHHHHHHhCCCchHHHHHHHHH---HHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632           56 LLKEVVRLSPNLPETYNTLGLA---HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE  132 (687)
Q Consensus        56 ~~~~~l~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  132 (687)
                      .+...+..+|+.|..-......   +.+.+++..-+.++..    .|.+....+..+......|+..+|.....++....
T Consensus        57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~  132 (618)
T 1qsa_A           57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (618)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence            4455566788877654443333   2245666666554433    37788888888888888888877777666665433


Q ss_pred             CCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH-------------HHhCCCCHH----------
Q 005632          133 PKD------------------ISLRIHLASFYVEIGDYEKAAESYEQI-------------QKLFPDNVD----------  171 (687)
Q Consensus       133 p~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~~-------------~~~~p~~~~----------  171 (687)
                      ...                  ++-+.......+..|+...|......+             +..+|.+..          
T Consensus       133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~  212 (618)
T 1qsa_A          133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATD  212 (618)
T ss_dssp             SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCH
T ss_pred             CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCCh
Confidence            211                  222333445555566665554443321             112333221          


Q ss_pred             ---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH--HHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHH
Q 005632          172 ---ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL--SVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKL  246 (687)
Q Consensus       172 ---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  246 (687)
                         ....++.......+.+.|...+.......+-+...  .....++.-....+...++..++.+....    .......
T Consensus       213 ~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  288 (618)
T 1qsa_A          213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----SQSTSLI  288 (618)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----CCCHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc----CCChHHH
Confidence               12223444445568888988888776544332221  12223333334445355677777775543    2222222


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhcc------------CC---
Q 005632          247 KVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNA------------GT---  311 (687)
Q Consensus       247 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------~~---  311 (687)
                      .. .+...++.|+++.|...|..+..... ......+.+|.++...|+.++|..+|+.+....            .+   
T Consensus       289 e~-~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~  366 (618)
T 1qsa_A          289 ER-RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYEL  366 (618)
T ss_dssp             HH-HHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCC
T ss_pred             HH-HHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCC
Confidence            23 33345577999999999988755433 367778899999999999999999998765320            00   


Q ss_pred             ----C----c----HHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcC
Q 005632          312 ----D----N----GYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLS  372 (687)
Q Consensus       312 ----~----~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  372 (687)
                          .    .    ...-...+..+...|....|...+..++...  +..-...++.+....|.+..++....
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~  437 (618)
T 1qsa_A          367 KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI  437 (618)
T ss_dssp             CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence                0    0    0123455667778888888888887776542  34445667777788888887775543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.40  E-value=0.31  Score=54.03  Aligned_cols=99  Identities=9%  Similarity=0.031  Sum_probs=58.8

Q ss_pred             HHHHcCChHHHHH-HHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 005632           77 AHSALGNHKSAFD-FYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA  155 (687)
Q Consensus        77 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A  155 (687)
                      .....+++++|.. .+.    .-|+ ......++..+...|.+++|+...+        ++...+   ......|++++|
T Consensus       608 ~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A  671 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLA  671 (814)
T ss_dssp             HHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHH
Confidence            3345677777765 331    1110 1223556666777777777765542        222222   334567777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632          156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY  196 (687)
Q Consensus       156 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  196 (687)
                      .+..+.     .+++..|..+|..+...++++.|+.+|.++
T Consensus       672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            776432     255677777777777777777777777765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.33  E-value=0.89  Score=44.47  Aligned_cols=190  Identities=12%  Similarity=0.069  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH-----HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC--CHH----
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-----LWKQLLTFAVQ-KGDTAQAMYYIRQAIRAEPK--DIS----  137 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~--~~~----  137 (687)
                      +.+.+|..|...|++++-.+++......-+.-+.     ....+-..+.. -+..+.-++....+++-..+  -..    
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~  100 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666665555554433222111     11222222222 13333344444444432111  111    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCCc--H
Q 005632          138 LRIHLASFYVEIGDYEKAAESYEQIQKLFPD--N----VDATKTGAQLFLKCGQTARSIGILEEYLKVH---PSDAD--L  206 (687)
Q Consensus       138 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~--~  206 (687)
                      .-..+|..|+..|+|.+|...+.+..+....  +    .+++.....+|...+++.++...+.++....   +.++.  .
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            2236899999999999999988888764222  1    3567777888999999999999998886553   12221  2


Q ss_pred             HHHHHHHHHHH-HcchHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHcCC
Q 005632          207 SVIDLLVAILM-ENNAYEKTLQHIEHAQIVRFSGK-ELPLKLKVKAGICYLRLGN  259 (687)
Q Consensus       207 ~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  259 (687)
                      .+...-|..+. ..++|.+|...|-.+...+.... +....+...++.+....++
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence            23455677888 89999999999988877654221 1122333444555555554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.029  Score=59.88  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=71.2

Q ss_pred             cCC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHH--Hc-CChHHHHHHHHHHhcc--------CCCC----------HHH
Q 005632           47 YGN-FEQAISLLKEVVRLSPNLPETYNTLGLAHS--AL-GNHKSAFDFYVIAAHL--------SPKD----------SAL  104 (687)
Q Consensus        47 ~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--~~-g~~~~A~~~~~~al~~--------~p~~----------~~~  104 (687)
                      .|+ ++.|+.++++....+|.... ++..+.+..  .. .+--+|+..+.+.++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            444 57788888888888885433 222222222  11 2233566666555531        1222          123


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632          105 WKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI  162 (687)
Q Consensus       105 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  162 (687)
                      +..-+..+...|+++-|+.+.++++...|.+...|+.|+.+|..+|+|+.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3344666667777888888888888878877778888888888888888777665554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.23  Score=41.98  Aligned_cols=45  Identities=29%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632           45 YAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIA   94 (687)
Q Consensus        45 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   94 (687)
                      ...|+++.|.++.++.     ++...|..+|...+..|+++-|..+|.++
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            4566777776666554     45566666677766777766666666665

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.10  E-value=0.47  Score=39.03  Aligned_cols=118  Identities=16%  Similarity=0.071  Sum_probs=69.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           43 LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAM  122 (687)
Q Consensus        43 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  122 (687)
                      ..++-.+|+.++-+-.-.   .|..++.-..++..++-.|.+..++-.+..     -+...+.+.-+.||....++..|+
T Consensus        11 Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~   82 (242)
T 3kae_A           11 KSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAI   82 (242)
T ss_dssp             HHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777665443322   344456666777777778888777766543     244566666777788888888888


Q ss_pred             HHHHHHHHh-----------------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632          123 YYIRQAIRA-----------------EPKDISL-RIHLASFYVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus       123 ~~~~~a~~~-----------------~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                      .++++.++-                 +|.+.+. +..+|.++...|+-++|+.++.......|-
T Consensus        83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A           83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            888887731                 1222222 334555555555555555555555555554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.00  E-value=1.6  Score=47.58  Aligned_cols=185  Identities=9%  Similarity=0.059  Sum_probs=79.0

Q ss_pred             hcCCHHHHHHHHHHHHHhC-CC----chHHHHHHHHHHHHcCChHHHHHHHHHHhccCC---C---CH----HHHHHHHH
Q 005632           46 AYGNFEQAISLLKEVVRLS-PN----LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP---K---DS----ALWKQLLT  110 (687)
Q Consensus        46 ~~g~~~~A~~~~~~~l~~~-p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~la~  110 (687)
                      ..|+.++++..+.+.+... .+    ...+++.+|.++...+  .+++..+...+..+.   .   ..    .+-..+|.
T Consensus       386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4455555655555544321 11    1224444554443333  345555555543221   0   11    23334555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDI--SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                      ++...++ +++.+.+...+..+....  .+-+.+|.++...|+.+-....+..+.+...++..-...+|..+...|+.+.
T Consensus       464 a~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~  542 (963)
T 4ady_A          464 AAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL  542 (963)
T ss_dssp             HSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred             HhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence            5544443 345555555554322111  2334455555566665444444444443222111112223333345566655


Q ss_pred             HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632          189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ  233 (687)
Q Consensus       189 A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  233 (687)
                      +....+.+...........+...+|..|...|+...-...+..+.
T Consensus       543 ~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~  587 (963)
T 4ady_A          543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV  587 (963)
T ss_dssp             GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence            555555444322111111223344555556666544333554444

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.94  E-value=0.84  Score=49.81  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=11.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHh
Q 005632           72 NTLGLAHSALGNHKSAFDFYVIAA   95 (687)
Q Consensus        72 ~~l~~~~~~~g~~~~A~~~~~~al   95 (687)
                      +....|+..+++.+.+.+.|.+.+
T Consensus       234 ~~a~~~ai~LnD~~li~~if~~l~  257 (963)
T 4ady_A          234 LTLNKVVVNLNDAGLALQLFKKLK  257 (963)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333444455555555555555544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.93  E-value=0.051  Score=59.29  Aligned_cols=110  Identities=10%  Similarity=-0.085  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHH
Q 005632          170 VDATKTGAQLFLKCGQTARSIGILEEYLKV--HPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLK  247 (687)
Q Consensus       170 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  247 (687)
                      ...+..+...|.+.|+.++|..+|..+.+.  ..-.++...|+.+...+.+.|+.++|.+.|+++... +  -..+...+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G--~~PDvvTY  203 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-G--LTPDLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T--CCCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C--CCCcHHHH
Confidence            356788889999999999999999876543  123345558899999999999999999999998765 2  44566777


Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHhhhCchhhHHHH
Q 005632          248 VKAGICYLRLGNM-EKAEILFADLQWKNAIDHADLI  282 (687)
Q Consensus       248 ~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~  282 (687)
                      ..+..++.+.|+. ++|..+|+++....-..+...+
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY  239 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT  239 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhc
Confidence            7888888888874 7888999998776543344333

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.79  E-value=0.65  Score=38.19  Aligned_cols=56  Identities=18%  Similarity=0.235  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ  163 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  163 (687)
                      +.-..++.+++-.|.+..++-.+.+     -+...+.+..+.||....++..|+..++..+
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il   89 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESIL   89 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455555555555443322     2334444445555555555555555555554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.065  Score=57.24  Aligned_cols=115  Identities=13%  Similarity=0.174  Sum_probs=81.5

Q ss_pred             cCC-hHHHHHHHHHHhccCCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------CCCC----------HHH
Q 005632           81 LGN-HKSAFDFYVIAAHLSPKDSALWKQLLTFAV--QK-GDTAQAMYYIRQAIRA--------EPKD----------ISL  138 (687)
Q Consensus        81 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~a~~~--------~p~~----------~~~  138 (687)
                      .++ ++.|+..+++....+|.....+ ..+.+..  .. .+--+|+..+.+.++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            444 5789999999988888754333 2222221  12 2344566666666531        2222          234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632          139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY  196 (687)
Q Consensus       139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  196 (687)
                      +...+..+...|+++-|+.+-+++....|.+...|..|+.+|..+|+|+.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5566778888899999999999999999999999999999999999999998877765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=95.58  E-value=0.1  Score=57.03  Aligned_cols=98  Identities=11%  Similarity=0.023  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhh---hCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHH
Q 005632          246 LKVKAGICYLRLGNMEKAEILFADLQW---KNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAE  322 (687)
Q Consensus       246 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~  322 (687)
                      .+..+...+.+.|+.++|..+|..+..   .....+...|..+...+.+.|+.++|.++|+++....-..+...|..+..
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            444555555666666666666544321   11112555566666666666666666666666655544555556666666


Q ss_pred             HHHHhhc-HHHHHHHHHHHHHh
Q 005632          323 CYLSLKE-RAHAIMFFYKALDR  343 (687)
Q Consensus       323 ~~~~~g~-~~~A~~~~~~al~~  343 (687)
                      ++.+.|+ .++|.++|+++.+.
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHc
Confidence            6666665 34556666665554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.55  E-value=0.49  Score=40.02  Aligned_cols=43  Identities=26%  Similarity=0.375  Sum_probs=19.9

Q ss_pred             HcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632           80 ALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQ  127 (687)
Q Consensus        80 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  127 (687)
                      ..|+++.|.+..+..     ++...|..+|......|+++-|..+|.+
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            344555554444332     2344444444444444444444444444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.54  E-value=0.41  Score=43.35  Aligned_cols=121  Identities=18%  Similarity=0.129  Sum_probs=79.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      ...+++.|+.++|++.+...++.+|.++.....+...++-.|+++.|...++.+.+++|.....-..+-.+.       .
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~   76 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------K   76 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------H
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------H
Confidence            345678889999999999999999999999888888999999999999999998888887644322111110       1


Q ss_pred             HHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005632          121 AMYYIRQAIRA-----EPKDI---SLRIHLASFYVEIGDYEKAAESYEQIQKLFPD  168 (687)
Q Consensus       121 A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  168 (687)
                      |...=..++.-     .+..+   .....-+......|+.++|...-.++++..|.
T Consensus        77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence            11111112210     11111   22333445556678888888888888777654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.40  E-value=2.6  Score=42.42  Aligned_cols=173  Identities=11%  Similarity=0.082  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----hC--chhhH
Q 005632          208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSG--KELPLKLKVKAGICYLRLGNMEKAEILFADLQW----KN--AIDHA  279 (687)
Q Consensus       208 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~  279 (687)
                      +...++.++...|++.+|...+..........  .......+.....++...+++..|...++++..    ..  |.-..
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~  218 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL  218 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence            44567778888888888887777765432211  122345666677777788888888877777532    11  11234


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CCcH---HHHHHHHHHHHHhhc-HHHHHHHHHHHHHhcCC--CHHHHH
Q 005632          280 DLITEVADTLMSLGHSNSALKYYHFLETNAG-TDNG---YLYLKLAECYLSLKE-RAHAIMFFYKALDRFED--NIDARL  352 (687)
Q Consensus       280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~--~~~~~~  352 (687)
                      ..+...|.++...++|.+|..+|..+..... .+++   ......+.++.-+.. ...--....+.. .++.  ....+.
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~-~~~~~~~l~~~~  297 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ-NDNNLKKLESQE  297 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH-HHSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh-hcccccccHHHH
Confidence            4566777888888888888888777664310 1111   111112222221111 111111111111 1221  234566


Q ss_pred             HHHHHHHHc--CCHHHHHHhcCCCCcCCccc
Q 005632          353 TLASLLLEE--AKEEEAITLLSPPKDLDSLD  381 (687)
Q Consensus       353 ~la~~~~~~--g~~~~A~~~~~~a~~~~~~~  381 (687)
                      .+..++...  .+++...+.|...+..++..
T Consensus       298 ~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~  328 (445)
T 4b4t_P          298 SLVKLFTTNELMRWPIVQKTYEPVLNEDDLA  328 (445)
T ss_dssp             HHHHHHHHCCSSSHHHHHHHTCSSTTTCCSS
T ss_pred             HHHHHHHhchHhhhHHHHHHHHHHhcccchh
Confidence            677777653  57889999998887766643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.24  E-value=0.29  Score=48.40  Aligned_cols=60  Identities=8%  Similarity=0.027  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005632          139 RIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLK  198 (687)
Q Consensus       139 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  198 (687)
                      ...++..+...|++.+|+..+..++..+|-+..++..+..++...|+..+|+..|+++-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444566666777777777777777777777777777777777777777777777666543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.19  E-value=0.36  Score=43.74  Aligned_cols=59  Identities=39%  Similarity=0.575  Sum_probs=42.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       112 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      +++.|+.++|+......++.+|.+......+..+++-.|+++.|...++.+.+++|...
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            44567777777777777777777777777777777777777777777777777777654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.12  E-value=0.24  Score=48.95  Aligned_cols=119  Identities=13%  Similarity=0.012  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHH-HHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSA-FDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      +..+...|......|+.+.|...+.+++......+-.-.  .     ...+-.+ ...++..      ...+...++..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~--~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~  181 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--R-----DFQFVEPFATALVED------KVLAHTAKAEAE  181 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--T-----TSTTHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCC--C-----chhHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            344556677777789999999999999988643211100  0     0112111 1112111      123456678888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKL  165 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  165 (687)
                      ...|++.+++..+..++..+|-+..++..+..++...|+..+|+..|+++...
T Consensus       182 l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          182 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.23  E-value=4.1e-06  Score=81.59  Aligned_cols=275  Identities=14%  Similarity=0.049  Sum_probs=189.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005632          100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL  179 (687)
Q Consensus       100 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~  179 (687)
                      +.+..|..+|.++...+...+|++.|-++     +++..+.....+....|++++=+.+++.+.+. -..+.+-..|..+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a  125 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA  125 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence            45677888888888888888888877654     33444555556666788888888888777654 3445555677788


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCC
Q 005632          180 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGN  259 (687)
Q Consensus       180 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  259 (687)
                      |.+.++..+-.+.+.     .|+..+   ....|.-++..|.|+.|.-.|..+-.            +..++.++..+|+
T Consensus       126 yAk~~rL~elEefl~-----~~N~A~---iq~VGDrcf~e~lYeAAKilys~isN------------~akLAstLV~L~~  185 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-----GPNNAH---IQQVGDRCYDEKMYDAAKLLYNNVSN------------FGRLASTLVHLGE  185 (624)
T ss_dssp             HHTSCSSSTTTSTTS-----CCSSSC---THHHHHHHHHSCCSTTSSTTGGGSCC------------CTTTSSSSSSCSG
T ss_pred             HHhhCcHHHHHHHHc-----CCCccc---HHHHHHHHHHccCHHHHHHHHHhCcc------------HHHHHHHHHHHHH
Confidence            888888765444332     355554   45788889999999888776654321            3457778888999


Q ss_pred             HHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005632          260 MEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYK  339 (687)
Q Consensus       260 ~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  339 (687)
                      +..|++..+++      .++..|.....++...+++.-|..+--.++-  +++..   -.+...|...|-+++-+..++.
T Consensus       186 yq~AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv--hadeL---~elv~~YE~~G~f~ELIsLlEa  254 (624)
T 3lvg_A          186 YQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--HADEL---EELINYYQDRGYFEELITMLEA  254 (624)
T ss_dssp             GGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC--CSSCC---SGGGSSSSTTCCCTTSTTTHHH
T ss_pred             HHHHHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcc--cHHHH---HHHHHHHHhCCCHHHHHHHHHH
Confidence            99988877765      3777888899999999999888777655552  33322   1234567889999999999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHH
Q 005632          340 ALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDA  416 (687)
Q Consensus       340 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  416 (687)
                      ++.+...+......||.+|.+- +.++-.+.++.....-. -+.   .-..-.....|-.+..+|..-.+++.|...
T Consensus       255 glglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriN-ipK---viracE~ahLW~ElvfLY~~ydE~DnA~lt  326 (624)
T 3lvg_A          255 ALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVN-IPK---VLRAAEQAHLWAELVFLYDKYEEYDNAIIT  326 (624)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSC-CTT---THHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred             HhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc-HHH---HHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence            9998888999999999988654 45555555553222110 000   000001113567888888888888887543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.15  E-value=0.41  Score=48.19  Aligned_cols=189  Identities=13%  Similarity=0.057  Sum_probs=88.7

Q ss_pred             HHHcchHHHHHHHHHHHHH--Hhc-----cCCCchHHHHHHHHHHHHHcCCHHHHH----------HH----HHHH-hhh
Q 005632          216 LMENNAYEKTLQHIEHAQI--VRF-----SGKELPLKLKVKAGICYLRLGNMEKAE----------IL----FADL-QWK  273 (687)
Q Consensus       216 ~~~~~~~~~A~~~~~~~~~--~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~----------~~----~~~~-~~~  273 (687)
                      +...+++++|..+-...+.  ...     .-+.....+|+..+.++...|+.....          ..    ++.+ +..
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            3455666666665554431  111     113334455666666666666554321          11    1211 223


Q ss_pred             CchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC-CC---cHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCH-
Q 005632          274 NAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG-TD---NGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNI-  348 (687)
Q Consensus       274 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-  348 (687)
                      +.......+..+-+.|...+.++.|..+..+..-... ..   ....++.+|.++..+++|.+|.+++..|+...|.+. 
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence            3444677888999999999999999999998752211 11   245678899999999999999999999999887542 


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 005632          349 ------DARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPL  420 (687)
Q Consensus       349 ------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  420 (687)
                            .++-.+.-+-+-+|+..+-.-+-....+.               ....|+.++.++ +.|+..+....+.+-
T Consensus       306 a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~---------------~L~pY~~Lv~Av-r~GdL~~F~~~L~~h  367 (523)
T 4b4t_S          306 SLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQK---------------SLLPYYHLTKAV-KLGDLKKFTSTITKY  367 (523)
T ss_dssp             CSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHH---------------HHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHH---------------HHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence                  23223333434468765422222211110               113577888887 778887765554443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.84  E-value=0.36  Score=48.62  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             hhHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH-----------hCCCchHHHHHHHHHHHHcCChHHHH----------
Q 005632           32 PGVTKMLGE--ASLQYAYGNFEQAISLLKEVVR-----------LSPNLPETYNTLGLAHSALGNHKSAF----------   88 (687)
Q Consensus        32 ~~~~~~~~~--a~~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~l~~~~~~~g~~~~A~----------   88 (687)
                      |++..++..  -..++..+++++|.++....+.           .++-.+.+|+..+.++...|+.....          
T Consensus       132 pE~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir  211 (523)
T 4b4t_S          132 AEINCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILR  211 (523)
T ss_dssp             -----------------------------------------------------------------------CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHH
Confidence            444444322  3344567777777777665541           12334556666666666666554321          


Q ss_pred             HHHHHHh-----ccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHH
Q 005632           89 DFYVIAA-----HLSPK-DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD-------ISLRIHLASFYVEIGDYEKA  155 (687)
Q Consensus        89 ~~~~~al-----~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~g~~~~A  155 (687)
                      ..+-.++     ..++. ....+..+-+.|...+.+++|..+..++.  .|..       ...++.+|.++..+++|.+|
T Consensus       212 ~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA  289 (523)
T 4b4t_S          212 STMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTA  289 (523)
T ss_dssp             THHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence            1111111     11221 23445566677777777777777777663  3322       23455667777777777777


Q ss_pred             HHHHHHHHHhCCCC
Q 005632          156 AESYEQIQKLFPDN  169 (687)
Q Consensus       156 ~~~~~~~~~~~p~~  169 (687)
                      .+++..++...|.+
T Consensus       290 ~~~L~~A~rkap~~  303 (523)
T 4b4t_S          290 NEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHhCCcc
Confidence            77777777665543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.21  E-value=8.9  Score=44.00  Aligned_cols=197  Identities=12%  Similarity=0.079  Sum_probs=121.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------
Q 005632          141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVH--------------------  200 (687)
Q Consensus       141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------  200 (687)
                      .+...+...+.++-+.+    .....|.++...+.+|.++...|++++|..+|+++..--                    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34555666677765543    445677788888999999999999999999998763210                    


Q ss_pred             C-CCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhh
Q 005632          201 P-SDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL-PLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH  278 (687)
Q Consensus       201 p-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  278 (687)
                      + .......|..+..++...+.++.+++..+.+++..+.+++. ....|..+-..+...|+|++|...+...-...  ..
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r  970 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK  970 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence            0 11112235567788888999999999999999874433322 33467778888899999999988886653221  13


Q ss_pred             HHHHHHHHHHHHhcCC------------hHHHHHHHHHhh-hccC-CCcHHHHHHHHHHHHHhhcHHH-HHHHHHHHHHh
Q 005632          279 ADLITEVADTLMSLGH------------SNSALKYYHFLE-TNAG-TDNGYLYLKLAECYLSLKERAH-AIMFFYKALDR  343 (687)
Q Consensus       279 ~~~~~~la~~~~~~g~------------~~~A~~~~~~~~-~~~~-~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~  343 (687)
                      ...+..+...+++.|.            .++..+.+..-. .... ...+..|..|-..+...|++.. |.-+|+.+.++
T Consensus       971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B          971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence            3444555554554443            333333333211 1101 1223344444555666777665 44567777655

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.17  E-value=2.9  Score=48.02  Aligned_cols=60  Identities=15%  Similarity=0.001  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHHHcCChHHHHHHHHH
Q 005632          136 ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPD-NV----DATKTGAQLFLKCGQTARSIGILEE  195 (687)
Q Consensus       136 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~----~~~~~la~~~~~~g~~~~A~~~~~~  195 (687)
                      +..|.....++...|.++.+++..+.+++..+. +.    ..|..+-..+...|+|++|...+..
T Consensus       899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            344555555666666666666666666655432 22    1344555556666666666555543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.60  E-value=0.57  Score=47.57  Aligned_cols=81  Identities=20%  Similarity=0.061  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLK  182 (687)
Q Consensus       103 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~  182 (687)
                      ..+..+|++......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++..++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            35678899999899999999999999999999999999999999999999999999999988777788888888887765


Q ss_pred             c
Q 005632          183 C  183 (687)
Q Consensus       183 ~  183 (687)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.21  E-value=1  Score=45.81  Aligned_cols=80  Identities=21%  Similarity=0.255  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..+..+|.+......+..|..+|.+|..+.|++...+..||.+....|+.-+|+-+|-+++......+.+..++...+..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            36777888888888888888888888888888888888888888888888888888888888776677787777777654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.19  E-value=0.78  Score=46.03  Aligned_cols=101  Identities=17%  Similarity=0.136  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCc--hHHHH
Q 005632          171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL--PLKLK  247 (687)
Q Consensus       171 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~  247 (687)
                      .++..+|..|...|++++|.+.|.++........ ...++.....++...+++..+...+.++..........  .....
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            3556677777777777777777777665433222 12355566666677777777777777766553221111  11233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHh
Q 005632          248 VKAGICYLRLGNMEKAEILFADLQ  271 (687)
Q Consensus       248 ~~l~~~~~~~~~~~~A~~~~~~~~  271 (687)
                      ...|.++...++|..|...|-.+.
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~  235 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSL  235 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHh
Confidence            344445555556666555555543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.37  E-value=2  Score=43.07  Aligned_cols=100  Identities=4%  Similarity=-0.152  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC-----chhhHHHH
Q 005632          208 VIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKN-----AIDHADLI  282 (687)
Q Consensus       208 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~  282 (687)
                      ++..+|..+...|++++|.+.|.++.... .+......++.....++...+++..+...+.++....     +.......
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKA-ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            45678888888888888888888876652 2334556677777777777788877777777764321     11122334


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          283 TEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       283 ~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      ...|.++...++|.+|...|-.+...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            44555666666777776666655433

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.32  E-value=9.6  Score=35.75  Aligned_cols=23  Identities=4%  Similarity=-0.311  Sum_probs=17.5

Q ss_pred             HHHHHcCCchHHHHHHHHHHHHh
Q 005632          402 HIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       402 ~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      ..|...|+...|...+....++.
T Consensus       196 L~yL~l~n~~~A~~~~~~f~~~~  218 (312)
T 2wpv_A          196 FNYLFISNISFAHESKDIFLERF  218 (312)
T ss_dssp             HHHHHTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHH
Confidence            34567888888888888877665

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.07  E-value=13  Score=35.16  Aligned_cols=139  Identities=14%  Similarity=0.087  Sum_probs=69.5

Q ss_pred             ChhHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccC--CCC----
Q 005632           31 SPGVTKMLGEASLQYAYGNF---EQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS--PKD----  101 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~----  101 (687)
                      +..+...+.+-......|+|   =+|-+.++.+..              =|.+.++|++|++++......-  -..    
T Consensus         9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~--------------Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg   74 (336)
T 3lpz_A            9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAA--------------RYSKQGNWAAAVDILASVSQTLLRSGQGGSG   74 (336)
T ss_dssp             -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHH--------------HHHhhcCHHHHHHHHHHHHHHHHHCCCcchH
Confidence            34566777777788888998   777777765533              3566777777777654432110  000    


Q ss_pred             HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005632          102 SALWKQLLTFAVQKGD--TAQAMYYIRQAIRAEPK-DISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQ  178 (687)
Q Consensus       102 ~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~  178 (687)
                      .+.-..+..+|...+-  -++...-+.+++...|. .++ ...         =..+|+.+-.+.-...-.++..+..+|.
T Consensus        75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~-r~~---------fi~~ai~WS~~~g~~~~Gdp~LH~~ig~  144 (336)
T 3lpz_A           75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPV-RKR---------FVKEMIDWSKKFGDYPAGDPELHHVVGT  144 (336)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHH-HHH---------HHHHHHHHHHHHSSCTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcH-HHH---------HHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence            1111122233333221  12222233333333332 221 000         0122232222211112357788888888


Q ss_pred             HHHHcCChHHHHHHH
Q 005632          179 LFLKCGQTARSIGIL  193 (687)
Q Consensus       179 ~~~~~g~~~~A~~~~  193 (687)
                      .|.+.+++.+|..+|
T Consensus       145 ~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          145 LYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHccCCHHHHHHHH
Confidence            888888888887776

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=83.43  E-value=31  Score=32.62  Aligned_cols=168  Identities=14%  Similarity=0.046  Sum_probs=83.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh---CCC---chHHHHHHHHHHHHcCC--hHHHHHHHHHHhccCCC-CHHHHHHHH
Q 005632           39 GEASLQYAYGNFEQAISLLKEVVRL---SPN---LPETYNTLGLAHSALGN--HKSAFDFYVIAAHLSPK-DSALWKQLL  109 (687)
Q Consensus        39 ~~a~~~~~~g~~~~A~~~~~~~l~~---~p~---~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~-~~~~~~~la  109 (687)
                      ..+.-|.++++|++|++++......   ...   -.+.-..+..+|...+-  -++...-+.+.+...|. .++- ..  
T Consensus        40 Ti~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~--  116 (336)
T 3lpz_A           40 LVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR-KR--  116 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-HH--
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-HH--
Confidence            4577788999999999987665321   111   11222223344444331  12233333333333332 2210 00  


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632          110 TFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       110 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A  189 (687)
                             =..+|+.+-.+.-...-.+++.+..+|..|...+++.+|..+|-.  . ..+.++.+..+-.-+...+     
T Consensus       117 -------fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il--g-~~~s~~~~a~mL~ew~~~~-----  181 (336)
T 3lpz_A          117 -------FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL--G-TKESPEVLARMEYEWYKQD-----  181 (336)
T ss_dssp             -------HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT--S-CTTHHHHHHHHHHHHHHTS-----
T ss_pred             -------HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh--c-CCchHHHHHHHHHHHHHhc-----
Confidence                   012333333331112336799999999999999999999888731  1 1112233322222222221     


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                                .|...+. ........|...++...|...+....+.
T Consensus       182 ----------~~~e~dl-fiaRaVL~yL~l~n~~~A~~~~~~f~~~  216 (336)
T 3lpz_A          182 ----------ESHTAPL-YCARAVLPYLLVANVRAANTAYRIFTSA  216 (336)
T ss_dssp             ----------CGGGHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----------CCccHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                      1222221 1223344567778888888877665553

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.62  E-value=38  Score=31.74  Aligned_cols=49  Identities=12%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVI   93 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   93 (687)
                      ...+...+.+-......|+|=+|-+.++.+...              |.+.+++++|++.+..
T Consensus        10 ~~~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R--------------y~~~~~~~eAidlL~~   58 (312)
T 2wpv_A           10 QAKLAKTLQRFENKIKAGDYYEAHQTLRTIANR--------------YVRSKSYEHAIELISQ   58 (312)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------HHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH--------------HHHhcCHHHHHHHHHH
Confidence            335677777788888889998888888766432              4455666666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	687
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-16
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-12
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-11
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	4e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-12
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	9e-06
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-04
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	4e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	8e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.002
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 2e-17
 Identities = 38/165 (23%), Positives = 69/165 (41%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
            ++      F++A++     + LSPN    +  L   +   G    A D Y  A  L P 
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
               +  L     +KG  A+A      A+R  P       +LA+   E G+ E+A   Y 
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 161 QIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD 205
           +  ++FP+   A    A +  + G+   ++   +E +++ P+ AD
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 5e-17
 Identities = 65/368 (17%), Positives = 116/368 (31%), Gaps = 42/368 (11%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
           +  A  +Y  G+FE A     ++ R  P+       L   H        +  F  +A   
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 98  SPKDSALWKQL----------------------------------LTFAVQKGDTAQAMY 123
           +P  +  +  L                                      V  GD   A+ 
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC 183
               A++  P    +R  L +    +G  E+A   Y +  +  P+   A      +F   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 184 GQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELP 243
           G+   +I   E+ + + P+  D      L  +L E   +++ +     A  +  +   + 
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLD--AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240

Query: 244 LKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYH 303
             L       Y   G ++ A   +            D    +A+ L   G    A   Y+
Sbjct: 241 GNL----ACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYN 295

Query: 304 FLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK 363
                  T    L   LA           A+  + KAL+ F +   A   LAS+L ++ K
Sbjct: 296 TALRLCPTHADSLN-NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354

Query: 364 EEEAITLL 371
            +EA+   
Sbjct: 355 LQEALMHY 362

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 1e-16
 Identities = 33/132 (25%), Positives = 58/132 (43%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A + Y  G  + AI   +  + L P+ P+ Y  L  A    G+   A D Y  A  L P 
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYE 160
            +     L     ++G+  +A+   R+A+   P+  +   +LAS   + G  ++A   Y+
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363

Query: 161 QIQKLFPDNVDA 172
           +  ++ P   DA
Sbjct: 364 EAIRISPTFADA 375

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 40/265 (15%), Positives = 85/265 (32%), Gaps = 42/265 (15%)

Query: 96  HLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
              P  +  W  L      +G+   A+++  +A+  +P  +   I+L +   E   +++A
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222

Query: 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI 215
             +Y +   L P++       A ++ + G    +I      +++ P   D      L   
Sbjct: 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD--AYCNLANA 280

Query: 216 LMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275
           L E  +  +       A  +  +  +    L           GN+E+A  L+        
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNL----ANIKREQGNIEEAVRLY-------- 328

Query: 276 IDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIM 335
                                 AL+ +         +    +  LA       +   A+M
Sbjct: 329 --------------------RKALEVFP--------EFAAAHSNLASVLQQQGKLQEALM 360

Query: 336 FFYKALDRFEDNIDARLTLASLLLE 360
            + +A+       DA   + + L E
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 2e-11
 Identities = 48/233 (20%), Positives = 85/233 (36%), Gaps = 15/233 (6%)

Query: 65  PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYY 124
           PN    ++ LG   +A G    A   +  A  L P     +  L     +     +A+  
Sbjct: 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225

Query: 125 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184
             +A+   P    +  +LA  Y E G  + A ++Y +  +L P   DA    A    + G
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285

Query: 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL 244
             A +       L++ P+ AD   ++ L  I  E    E+ ++    A  V         
Sbjct: 286 SVAEAEDCYNTALRLCPTHAD--SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343

Query: 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAI----DHADLITEVADTLMSLG 293
            L         + G +++A + +     K AI      AD  + + +TL  + 
Sbjct: 344 NL----ASVLQQQGKLQEALMHY-----KEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 25/111 (22%), Positives = 46/111 (41%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK 100
           A+     G+  +A       +RL P   ++ N L       GN + A   Y  A  + P+
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 151
            +A    L +   Q+G   +A+ + ++AIR  P       ++ +   E+ D
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 42/368 (11%), Positives = 99/368 (26%), Gaps = 25/368 (6%)

Query: 318 LKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDL 377
           ++LA       +   A     +   +  DN    L L+S+  +  + + +    +     
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST----- 57

Query: 378 DSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCESLCVEALRQKVKVK 437
            ++  N   +  +  N   + K     +           + P   +     A        
Sbjct: 58  LAIKQNPLLAEAY-SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 116

Query: 438 RRLTKGILQQRTKIYNNLPTDSILCGIRPAAPKSELLVAARARKKIQKKEALKEEKKALA 497
                       +   +L       G    A        A   K I+ +         L 
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 498 KAAGVEWHSDDTDDESQQEAFREPPLPNLLKNEENQCLIIDLCKALASLQRYEEASEIIN 557
                +          ++    +P   +   N         L   L   + ++ A     
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN---------LGNVLKEARIFDRAVAAYL 227

Query: 558 LSMRLAYNILPLEKKEELRSLGAKMAYDSTDPNHGFDCAKYILQLHPYSLSAWNCYYKVL 617
            ++ L+ N         +    A + Y+    +   D  +  ++L P+   A+      L
Sbjct: 228 RALSLSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281

Query: 618 SRMGKINSKHSKHSKFIRYLRAKYKDCVPPIIISGHQFTMASHHQDAARCYLEAYKLLPE 677
              G +      ++  +R            +    +      + ++A R Y +A ++ PE
Sbjct: 282 KEKGSVAEAEDCYNTALRL----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 678 NPLINLKR 685
               +   
Sbjct: 338 FAAAHSNL 345

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 17/115 (14%), Positives = 39/115 (33%)

Query: 3   LINYGGYRKKTRKLNKKRGRRKGSKNKLSPGVTKMLGEASLQYAYGNFEQAISLLKEVVR 62
             N     K+   + +       +          +   A+++   GN E+A+ L ++ + 
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333

Query: 63  LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 117
           + P     ++ L       G  + A   Y  A  +SP  +  +  +     +  D
Sbjct: 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 2e-12
 Identities = 37/251 (14%), Positives = 76/251 (30%), Gaps = 16/251 (6%)

Query: 120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL 179
           Q+  Y+RQA   +      ++  A  +      +     Y+++     +     K    L
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60

Query: 180 FLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMEN-NAYEKTLQHIEHAQIVRFS 238
           +    +    I  L+   K   +     V   L   L      Y + LQ +     V   
Sbjct: 61  WNHAFKNQ--ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLP 118

Query: 239 GKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSA 298
            +    +L    GI   +  +        +      +      +  + D       ++ A
Sbjct: 119 CRVKSSQL----GIISNKQTHTSAIVKPQSSSC---SYICQHCLVHLGDIARYRNQTSQA 171

Query: 299 LKYY-HFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASL 357
             YY H  +      NG  Y +LA    S  +    I ++ +++        A   L   
Sbjct: 172 ESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229

Query: 358 LLEEAKEEEAI 368
           L +  +  + +
Sbjct: 230 LSKALESRDEV 240

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 3e-11
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 2/148 (1%)

Query: 43  LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDS 102
           L+ A G + Q +  L  V  +        + LG+  +   +  +       +     +  
Sbjct: 95  LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC 154

Query: 103 ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQI 162
                L   A  +  T+QA  Y R A +  P +      LA      GD+      Y + 
Sbjct: 155 --LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212

Query: 163 QKLFPDNVDATKTGAQLFLKCGQTARSI 190
             +      A+    +   K  ++   +
Sbjct: 213 IAVKFPFPAASTNLQKALSKALESRDEV 240

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 12/213 (5%)

Query: 52  QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTF 111
           Q+   L++   L  ++ ++        ++    +     Y        + +   K     
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60

Query: 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE-IGDYEKAAESYEQIQKLFPDNV 170
                         +   RA P    ++ +L+ F     G Y +  +    +  +     
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120

Query: 171 DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIE 230
             +     +  K   T+  +               +     L  I    N   +   +  
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVH----LGDIARYRNQTSQAESYYR 176

Query: 231 HAQIVRFSGKELPLKLKVKAGICYLRLGNMEKA 263
           HA  +  S  +   +L     I     G+    
Sbjct: 177 HAAQLVPSNGQPYNQL----AILASSKGDHLTT 205

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 25/174 (14%), Positives = 49/174 (28%), Gaps = 9/174 (5%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
            +    +                   LG           A  +Y  AA L P +   + Q
Sbjct: 134 THTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQ 191

Query: 108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFP 167
           L   A  KGD    ++Y  ++I  +    +   +L     +  +     ++   +     
Sbjct: 192 LAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIK 251

Query: 168 DNVDATKTGAQLFLKCGQT--ARSIGILEEYLKVHPSDADLSVIDL--LVAILM 217
             +   K    ++L       +     LEE  K        +   L  +  I +
Sbjct: 252 AFI---KFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINL 302

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 65.1 bits (158), Expect = 4e-12
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 48  GNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ 107
           G  +QA+ LL E ++ SP      ++        G+ + A +  + +  L P+      Q
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 108 LLTFAVQKGDTAQAM-YYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
           L                     +  E ++++  +   +  +   DYE+ +E   QI++L 
Sbjct: 70  LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129

Query: 167 PDN 169
            + 
Sbjct: 130 QEK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 1/122 (0%)

Query: 112 AVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171
           A+ +G   QA+  + +AI+A PKD SLR          GD+E+A E   Q  KLFP+ + 
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 172 ATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH 231
                  L                   +  ++       +   + M +  YE+  +    
Sbjct: 66  GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS-LVSFNLSMVSQDYEQVSELALQ 124

Query: 232 AQ 233
            +
Sbjct: 125 IE 126

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 1/112 (0%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLS-P 99
             L    G+FE+A   L + ++L P      + L     A    K        A  L   
Sbjct: 37  IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGEN 96

Query: 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD 151
           ++          ++   D  Q      Q      +   L    +   V   D
Sbjct: 97  EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDID 148

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 34/237 (14%), Positives = 64/237 (27%), Gaps = 10/237 (4%)

Query: 125 IRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCG 184
           +      + +   L       Y  +G    A   + Q   + PD  +          + G
Sbjct: 26  LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 85

Query: 185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPL 244
               +    +  L++ P+             L      +     +        +     L
Sbjct: 86  NFDAAYEAFDSVLELDPTYNY--AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 143

Query: 245 KLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 304
                  +   +L   +  E+L    +  +       I E     +S       LK    
Sbjct: 144 ----WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT 199

Query: 305 LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKAL----DRFEDNIDARLTLASL 357
             T+           L + YLSL +   A   F  A+      F ++  A L L+ L
Sbjct: 200 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLL 256

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 2/126 (1%)

Query: 49  NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP--KDSALWK 106
             + A   L    +  PN P     L LA   L   ++                   + +
Sbjct: 120 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVE 179

Query: 107 QLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLF 166
             L    ++    +                    +L  +Y+ +GD + A   ++      
Sbjct: 180 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239

Query: 167 PDNVDA 172
             N   
Sbjct: 240 VHNFVE 245

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 41/319 (12%), Positives = 80/319 (25%), Gaps = 34/319 (10%)

Query: 38  LGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHL 97
             E   +   G+   A+ L +  V+  P   E +  LG   +       A         L
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 98  SPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAE 157
            P +      L      +    QA   +R  +R  P    L           G       
Sbjct: 83  KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP---- 138

Query: 158 SYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILM 217
                          +K      L          +    +++ P+  D  V   L  +  
Sbjct: 139 ---------------SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183

Query: 218 ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAID 277
            +  Y+K +     A  VR +                L  GN  +  +       +    
Sbjct: 184 LSGEYDKAVDCFTAALSVRPNDYL-----LWNKLGATLANGNQSEEAVAAYRRALELQPG 238

Query: 278 HADLITEVADTLMSLGHSNSALKYY----------HFLETNAGTDNGYLYLKLAECYLSL 327
           +      +  + ++LG    A++++                 G  +  ++  L      L
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 298

Query: 328 KERAHAIMFFYKALDRFED 346
            +         + L     
Sbjct: 299 GQSDAYGAADARDLSTLLT 317

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 33/276 (11%), Positives = 76/276 (27%), Gaps = 14/276 (5%)

Query: 134 KDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGIL 193
           +D           ++ GD   A   +E   +  P +++A +       +  Q   +I  L
Sbjct: 17  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76

Query: 194 EEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC 253
              L++ P +    +   +             +          ++    P +        
Sbjct: 77  RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 136

Query: 254 ---------YLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHF 304
                     L      + + LF      +       +      L +L            
Sbjct: 137 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 196

Query: 305 LETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKE 364
              +   ++  L+ KL     +  +   A+  + +AL+     I +R  L    +     
Sbjct: 197 AALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 256

Query: 365 EEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKL 400
            EA+        L++L+M      P      +   +
Sbjct: 257 REAVEHF-----LEALNMQRKSRGPRGEGGAMSENI 287

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 21/174 (12%), Positives = 51/174 (29%)

Query: 69  ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 128
           +     G        +  A   Y  A   +P  +  +       ++     QA+   R+A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR 188
           +  + + +     L    +E+  Y++A  + ++   L  +            L+  +  R
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124

Query: 189 SIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKEL 242
              I E  +             +      E    ++  +  E    +R     +
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (106), Expect = 6e-06
 Identities = 19/202 (9%), Positives = 59/202 (29%), Gaps = 10/202 (4%)

Query: 31  SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDF 90
           SP   ++  + +  +    + +A +     +  +P +   Y    L +  +   + A   
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 91  YVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIG 150
              A  L  +       L    ++     +A+  +++A     +            + I 
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 151 DYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVID 210
             ++     E+       + ++        L   +  R +   +   + H  D       
Sbjct: 121 KKKRWNSIEER-----RIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD-----GH 170

Query: 211 LLVAILMENNAYEKTLQHIEHA 232
           +          ++K +  ++  
Sbjct: 171 IRAQQACIEAKHDKYMADMDEL 192

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 16/146 (10%), Positives = 45/146 (30%), Gaps = 19/146 (13%)

Query: 40  EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSP 99
           E  L     +++ A+        +          +G  ++ L N   A   +  + +   
Sbjct: 11  EGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 100 KDSALWKQLLTFAVQKGDTAQAMYYIRQAI----------------RAEPKDISLRIHLA 143
             +  + Q      Q      A+  +++A+                + +     +  ++A
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 127

Query: 144 SFYVEIGDYEKAAESYEQIQKLFPDN 169
             Y +  +++KA E       +  + 
Sbjct: 128 FMYAKKEEWKKAEEQLALATSMKSEP 153

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 2/136 (1%)

Query: 69  ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 128
           E   T    +    ++++A  FY  A  L+P ++  +       ++      A+    +A
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQL--FLKCGQT 186
           I  + K I      A+  + +G +  A   YE + K+ P + DA     +    +K    
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130

Query: 187 ARSIGILEEYLKVHPS 202
            R+I   E    V  S
Sbjct: 131 ERAIAGDEHKRSVVDS 146

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 7/113 (6%)

Query: 69  ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 128
                LG       +  +A   Y  A  L P +            +KGD  +      +A
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 129 IRAEPKDISLRIH-------LASFYVEIGDYEKAAESYEQIQKLFPDNVDATK 174
           I    ++             + + Y +   Y+ A   Y +            K
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 36/346 (10%), Positives = 75/346 (21%), Gaps = 30/346 (8%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLP-----ETYNTLGLAHSALGNHKSAFDFYVIAA 95
           A +    GN ++A  L K  +   P           + LG      G    +        
Sbjct: 19  AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 78

Query: 96  HLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKA 155
            ++ +       L +         Q    +      +    +          +  +    
Sbjct: 79  QMARQHDVWHYALWSL-------IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 131

Query: 156 AESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAI 215
            E   +I+                     +   S    ++   +                
Sbjct: 132 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG----D 187

Query: 216 LMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNA 275
           L    +    L+++               K++V                   A  ++ N 
Sbjct: 188 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 247

Query: 276 IDHADLITEVADTLMSLGHSNSALKYY-----HFLETNAGTDNGYLYLKLAECYLSLKER 330
                    +A   + LG    A         +       +D     L L + Y     +
Sbjct: 248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307

Query: 331 AHAIMFFYKALD---------RFEDNIDARLTLASLLLEEAKEEEA 367
           + A      AL           F    +A       L++     E 
Sbjct: 308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 353

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 34/241 (14%), Positives = 68/241 (28%), Gaps = 29/241 (12%)

Query: 41  ASLQYAYGNFEQAISLLKEVVRLSPNLP------ETYNTLGLAHSALGNHKSAFDFYVIA 94
           A++         A     +                TY        + GN  +A D    A
Sbjct: 44  ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103

Query: 95  AHLSPKD-------------SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIH 141
             +                   + +  L    +  D  +         ++        I 
Sbjct: 104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK 163

Query: 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLF-------LKCGQTARSIGILE 194
            A      G Y +A++ Y ++ K    N  +  +    F       L       +   L+
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

Query: 195 EYLKVHPSDADLSVIDLLVAIL--MENNAYEKTLQHI-EHAQIVRFSGKELPLKLKVKAG 251
           E     P+ AD    + L +++  +     E+  +H  E    +R    ++ +  K+K  
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKES 283

Query: 252 I 252
           I
Sbjct: 284 I 284

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 3/94 (3%)

Query: 142 LASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTA---RSIGILEEYLK 198
           + +  V + D  K  + ++  +     +       A   ++        + I +LEE L 
Sbjct: 5   VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP 64

Query: 199 VHPSDADLSVIDLLVAILMENNAYEKTLQHIEHA 232
               +     +  L         YEK L+++   
Sbjct: 65  KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 98

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 7e-04
 Identities = 35/269 (13%), Positives = 74/269 (27%), Gaps = 14/269 (5%)

Query: 63  LSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQL-LTFAVQKGDTAQA 121
            S    + Y+            + AF     A  L+  +  +W    +     + D  + 
Sbjct: 38  YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE 97

Query: 122 MYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL 181
           M YI   I  +PK+  +  H       + D  +  E    I      N  A +    +  
Sbjct: 98  MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 157

Query: 182 KCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE 241
           +       +  +++ LK    +    V +    ++     Y          Q        
Sbjct: 158 EFKLWDNELQYVDQLLKEDVRNNS--VWNQRYFVISNTTGYNDRAVLEREVQYTLEM--- 212

Query: 242 LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKY 301
             +KL       +  L  +        D       +  + + ++  +  S       +  
Sbjct: 213 --IKLVPHNESAWNYLKGI------LQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDI 264

Query: 302 YHFLETNAGTDNGYLYLKLAECYLSLKER 330
           Y  +  N   +   +  K  E    L + 
Sbjct: 265 YEDMLENQCDNKEDILNKALELCEILAKE 293

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 21/104 (20%), Positives = 37/104 (35%)

Query: 69  ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQA 128
                 G    ++GN   A   Y  A  L P +  L+        +KGD  +A     + 
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 129 IRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDA 172
           +  +P         A+    +  +E+A  +YE+  K   +N   
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 107

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 1/113 (0%)

Query: 58  KEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGD 117
           KE       L   +  L + +  L  +  A +    A  L   +     +     +   +
Sbjct: 54  KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 113

Query: 118 TAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDY-EKAAESYEQIQKLFPDN 169
              A     + +   P++ + R+ +     +  ++ E+   +Y  + K F + 
Sbjct: 114 FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQ 166

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 9/159 (5%), Positives = 37/159 (23%), Gaps = 30/159 (18%)

Query: 43  LQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSA--------------F 88
              A     + ++    ++  + +   +++        L     +               
Sbjct: 153 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL 212

Query: 89  DFYVIAAHLSPKDSALWKQLLTFAVQ----------------KGDTAQAMYYIRQAIRAE 132
           +    A    P D + W        +                     ++   +++     
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 133 PKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVD 171
              +   I L      +   ++  + +  ++ + P    
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	687
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.88
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.86
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.83
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.82
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.82
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.66
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.62
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.62
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.61
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.6
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.57
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.47
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.43
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.43
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.42
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.4
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.39
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.38
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.37
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.33
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.32
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.04
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.04
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.01
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.9
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.79
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.68
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	98.4
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.02
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.0
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.5
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.47
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.3

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-36  Score=307.22  Aligned_cols=368  Identities=18%  Similarity=0.141  Sum_probs=307.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      ++..|..+++.|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEY  196 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  196 (687)
                      ++++|+..+..+....|.........+......+....+...........+.........+......+....+...+.+.
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence            99999999999999999999888888888888888777777777777777777777777777777788888888888888


Q ss_pred             HHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch
Q 005632          197 LKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI  276 (687)
Q Consensus       197 ~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  276 (687)
                      +...|+...  ++..+|.++...|++++|...+++++..    +|....++..+|.++...|++++|+..++++....+.
T Consensus       162 ~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  235 (388)
T d1w3ba_         162 IETQPNFAV--AWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN  235 (388)
T ss_dssp             HHHCTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred             hccCcchhH--HHHhhcccccccCcHHHHHHHHHHHHHh----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence            777777664  5677788888888888888888888777    6677777777888888888888888888877776664


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 005632          277 DHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLAS  356 (687)
Q Consensus       277 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  356 (687)
                       ....+..+|.++...|++++|+..|++++.. .|+++.++..+|.++...|++++|+..++.++...|.+...+..++.
T Consensus       236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  313 (388)
T d1w3ba_         236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN  313 (388)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence             6777777888888888888888888887776 67778888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh
Q 005632          357 LLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCES  424 (687)
Q Consensus       357 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  424 (687)
                      ++...|++++|++.++++++.+|.++            .+++.+|.+|..+|++++|++.|+++++..
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVFPEFA------------AAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCTTCH------------HHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            88888888888888888877777654            477778888888888888877777766543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=290.84  Aligned_cols=359  Identities=18%  Similarity=0.173  Sum_probs=339.5

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      |.+...++..|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+..+...+|.........+.
T Consensus        30 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1w3ba_          30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAA  109 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccc
Confidence            44567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSI  190 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~  190 (687)
                      .....+....+...........+.........+......+....+...+.+.+...|+++.++..+|.++...|++++|.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  189 (388)
T d1w3ba_         110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI  189 (388)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005632          191 GILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADL  270 (687)
Q Consensus       191 ~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  270 (687)
                      ..+++++..+|++..  ++..+|.++...|++++|+..++++...    .+.....+..+|.++...|++++|+..|+++
T Consensus       190 ~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  263 (388)
T d1w3ba_         190 HHFEKAVTLDPNFLD--AYINLGNVLKEARIFDRAVAAYLRALSL----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRA  263 (388)
T ss_dssp             HHHHHHHHHCTTCHH--HHHHHHHHHHTTTCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHH--HHHHHhhhhhccccHHHHHHHHHHhHHH----hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999875  7889999999999999999999999998    7788888999999999999999999999999


Q ss_pred             hhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHH
Q 005632          271 QWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA  350 (687)
Q Consensus       271 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  350 (687)
                      +...|. ++.++..+|.++...|++++|+..++.+... .|..+..+..+|.++...|++++|+..|+++++.+|+++.+
T Consensus       264 l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  341 (388)
T d1w3ba_         264 IELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             HHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            998885 8999999999999999999999999999987 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCC
Q 005632          351 RLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGM  409 (687)
Q Consensus       351 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  409 (687)
                      +..+|.++...|++++|+..|+++++.+|.++            +++..+|.+|.++|+
T Consensus       342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~------------~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFA------------DAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH------------HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999875            589999999999886

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.7e-26  Score=222.83  Aligned_cols=280  Identities=14%  Similarity=0.095  Sum_probs=198.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ...+..|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++++|++...+..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            34456677777777777777777777777777777777777777777777777777777777777666666677777777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQH  228 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~  228 (687)
                      .|++++|++.+++++...|...............              ...       .........+...+.+.+|+..
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-------~~~~~~~~~~~~~~~~~~a~~~  158 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG--------------AGL-------GPSKRILGSLLSDSLFLEVKEL  158 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhh--------------ccc-------ccchhhHHHHHHhhHHHHHHHH
Confidence            7777777777776666666543221111000000              000       0011122334556778889999


Q ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      +.+++...+  ......++..+|.++...|++++|+..+++++...|. .+.++..+|.++...|++++|+..|+++++.
T Consensus       159 ~~~al~~~p--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  235 (323)
T d1fcha_         159 FLAAVRLDP--TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL  235 (323)
T ss_dssp             HHHHHHHST--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh--cccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHH
Confidence            999888733  2234667888999999999999999999999888875 8899999999999999999999999999987


Q ss_pred             cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHH-----------HHHHHHHHHHcCCHHHHHHhcCC
Q 005632          309 AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDA-----------RLTLASLLLEEAKEEEAITLLSP  373 (687)
Q Consensus       309 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~  373 (687)
                       .|+++.+++.+|.++...|++++|+..|+++++++|++..+           +..++.++...|+.+.+...-.+
T Consensus       236 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~  310 (323)
T d1fcha_         236 -QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  310 (323)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             -hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence             89999999999999999999999999999999999987654           34466666667776655554443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.5e-26  Score=222.95  Aligned_cols=237  Identities=18%  Similarity=0.180  Sum_probs=164.3

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      +....|.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|.++++++|++...+..+|.++
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            44456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIH---------------LASFYVEIGDYEKAAESYEQIQKLFPDN--VDATKT  175 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~---------------la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~  175 (687)
                      ...|++++|+..+++++...|........               ....+...+.+.+|+..|.++++.+|+.  +.++..
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~  177 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG  177 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence            99999999999999999999876432211               1112233344455555555555555442  344445


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 005632          176 GAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL  255 (687)
Q Consensus       176 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (687)
                      +|.++...|++++|+..+++++..+|++..  ++..+|.++...|++++|+..|+++++.    .|....+++.+|.++.
T Consensus       178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~  251 (323)
T d1fcha_         178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYL--LWNKLGATLANGNQSEEAVAAYRRALEL----QPGYIRSRYNLGISCI  251 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhccccccccccccccc--chhhhhhcccccccchhHHHHHHHHHHH----hhccHHHHHHHHHHHH
Confidence            555555555555555555555555555443  4455555555555555555555555555    4444445555555555


Q ss_pred             HcCCHHHHHHHHHHHhhhCc
Q 005632          256 RLGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       256 ~~~~~~~A~~~~~~~~~~~~  275 (687)
                      ..|++++|+..|++++...|
T Consensus       252 ~~g~~~~A~~~~~~al~l~p  271 (323)
T d1fcha_         252 NLGAHREAVEHFLEALNMQR  271 (323)
T ss_dssp             HHTCHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCC
Confidence            55555555555555544433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-21  Score=189.26  Aligned_cols=221  Identities=13%  Similarity=0.107  Sum_probs=193.8

Q ss_pred             CChhHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-ChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           30 LSPGVTKML-GEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG-NHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        30 ~~~~~~~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      .+|+....+ ..|.++...+.+++|+..++++++++|++..+|..+|.++...| ++++|+..+++++..+|++..+|..
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            356655544 56888999999999999999999999999999999999999987 5999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--
Q 005632          108 LLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQ--  185 (687)
Q Consensus       108 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~--  185 (687)
                      +|.++...|++++|+..+.++++.+|++..+|..+|.++...|++++|+..|+++++++|.+..+|..+|.++...+.  
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988877  


Q ss_pred             ----hHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Q 005632          186 ----TARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL  255 (687)
Q Consensus       186 ----~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (687)
                          +++|+..+.+++..+|++..  +|..++.++...| .+++...++.++...+  ......++..++.++.
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~--~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~--~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNES--AWNYLKGILQDRG-LSKYPNLLNQLLDLQP--SHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHTTTC-GGGCHHHHHHHHHHTT--TCCCHHHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchH--HHHHHHHHHHhcC-hHHHHHHHHHHHHhCC--CcCCHHHHHHHHHHHH
Confidence                57899999999999999875  7888888765544 5788888998888733  2233444555555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-21  Score=186.68  Aligned_cols=205  Identities=14%  Similarity=0.077  Sum_probs=153.1

Q ss_pred             HhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           62 RLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG-DTAQAMYYIRQAIRAEPKDISLRI  140 (687)
Q Consensus        62 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~  140 (687)
                      ..+|+..+++..+|.++...+.+++|+..++++++++|++..+|..+|.++...| ++++|+..++++++.+|++..+|.
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3456667788888888888888888888888888888888888888888888776 478888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcc
Q 005632          141 HLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENN  220 (687)
Q Consensus       141 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~  220 (687)
                      .+|.++...|++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++++|.+..  +|+.+|.++...+
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~--a~~~r~~~l~~~~  194 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS--VWNQRYFVISNTT  194 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH--HHHHHHHHHHHTT
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHH--HHHHHHHHHHHcc
Confidence            88888888888888888888888888888888888888888888888888888888888888765  6777877766654


Q ss_pred             h------HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q 005632          221 A------YEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWK  273 (687)
Q Consensus       221 ~------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  273 (687)
                      .      +++|+..+.+++..    .|.+..++..++.++... ..+++...++.++..
T Consensus       195 ~~~~~~~~~~ai~~~~~al~~----~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         195 GYNDRAVLEREVQYTLEMIKL----VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDL  248 (315)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHH
T ss_pred             ccchhhhhHHhHHHHHHHHHh----CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHh
Confidence            4      45666666666666    555555555555543322 234444444444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2e-22  Score=198.32  Aligned_cols=271  Identities=11%  Similarity=0.005  Sum_probs=175.0

Q ss_pred             HHhcCC-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC----------ChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           44 QYAYGN-FEQAISLLKEVVRLSPNLPETYNTLGLAHSALG----------NHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        44 ~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      ....|. .++|+.+++++++.+|+++.+|..++.++...+          ++.+|+.++++++..+|++..+|..+|.++
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~  117 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHH
Confidence            334444 489999999999999999988877777665443          366777777777777777777777777776


Q ss_pred             HHcCC--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632          113 VQKGD--TAQAMYYIRQAIRAEPKDISLR-IHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       113 ~~~g~--~~~A~~~~~~a~~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A  189 (687)
                      ...++  +++|+..+++++..+|.+..++ ...|.++...+.+++|+..++++++.+|.+..++..+|.++...|++++|
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            66553  6777777777777777776664 35566777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005632          190 IGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFAD  269 (687)
Q Consensus       190 ~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  269 (687)
                      +..+++++...|....      ....+...+..++                                      +...+.+
T Consensus       198 ~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~--------------------------------------a~~~~~~  233 (334)
T d1dcea1         198 GPQGRLPENVLLKELE------LVQNAFFTDPNDQ--------------------------------------SAWFYHR  233 (334)
T ss_dssp             SSCCSSCHHHHHHHHH------HHHHHHHHCSSCS--------------------------------------HHHHHHH
T ss_pred             HHHHHHhHHhHHHHHH------HHHHHHHhcchhH--------------------------------------HHHHHHH
Confidence            6665555555443221      1122223333334                                      4444444


Q ss_pred             HhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHH
Q 005632          270 LQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNID  349 (687)
Q Consensus       270 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  349 (687)
                      ++...|. ....+..++.++...|++.+|+..+.+++.. +|.+..++..+|.++...|++++|+.+|+++++++|.+..
T Consensus       234 ~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         234 WLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence            4444442 4444455555555566666666666666654 5666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHH
Q 005632          350 ARLTLASLLLE  360 (687)
Q Consensus       350 ~~~~la~~~~~  360 (687)
                      .|..++..+.-
T Consensus       312 y~~~L~~~~~~  322 (334)
T d1dcea1         312 YLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhH
Confidence            66666655553

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.9e-22  Score=197.18  Aligned_cols=268  Identities=10%  Similarity=0.035  Sum_probs=182.3

Q ss_pred             CChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632           82 GNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG----------DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD  151 (687)
Q Consensus        82 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  151 (687)
                      +..++|+.++++++..+|++..+|...+.++...+          ++++|+.++++++..+|+++.++..+|.++...++
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~  122 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcc
Confidence            33478888888888888888877776666554332          25556666666666666666666666655555443


Q ss_pred             --HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHH
Q 005632          152 --YEKAAESYEQIQKLFPDNVDAT-KTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQH  228 (687)
Q Consensus       152 --~~~A~~~~~~~~~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~  228 (687)
                        +++|+..+.++++.+|.+..++ ...|.++...+.+++|+..+++++..+|.+..  +|..+|.++...|++++|+..
T Consensus       123 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~--a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--SWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH--HHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHhcCHHHHHHH
Confidence              5566666666666666555543 34445555555666666666666555555543  455555555555555555444


Q ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      +.+++..                                      .|. ...    ....+...+..+++...+.+++..
T Consensus       201 ~~~~~~~--------------------------------------~~~-~~~----~~~~~~~l~~~~~a~~~~~~~l~~  237 (334)
T d1dcea1         201 GRLPENV--------------------------------------LLK-ELE----LVQNAFFTDPNDQSAWFYHRWLLG  237 (334)
T ss_dssp             CSSCHHH--------------------------------------HHH-HHH----HHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHhHHh--------------------------------------HHH-HHH----HHHHHHHhcchhHHHHHHHHHHHh
Confidence            4443333                                      221 222    222334556677888888888876


Q ss_pred             cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCCC
Q 005632          309 AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKSN  388 (687)
Q Consensus       309 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  388 (687)
                       .|.....+..++.++...|++.+|+..+.+++..+|.+..++..+|.++...|++++|+++++++++.+|...      
T Consensus       238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~------  310 (334)
T d1dcea1         238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA------  310 (334)
T ss_dssp             -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH------
T ss_pred             -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH------
Confidence             7888888999999999999999999999999999999999999999999999999999999999999999754      


Q ss_pred             hhhhhHHHHHHHH
Q 005632          389 PWWLNEKIIMKLC  401 (687)
Q Consensus       389 ~~~~~~~~~~~la  401 (687)
                      .+|.+....+.+-
T Consensus       311 ~y~~~L~~~~~~e  323 (334)
T d1dcea1         311 AYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHh
Confidence            3555554444443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.1e-20  Score=176.57  Aligned_cols=221  Identities=14%  Similarity=0.090  Sum_probs=159.7

Q ss_pred             CCHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 005632           48 GNFEQAISLLKEVVRLSP----NLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMY  123 (687)
Q Consensus        48 g~~~~A~~~~~~~l~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  123 (687)
                      ++.+.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345667777777776433    3566889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          124 YIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       124 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                      .|+++++++|+++.++..+|.++...|++++|+..|+++++.+|.+......++..+...+..+.+...........+..
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            99999999999999999999999999999999999999999999988888888888888777666666666555555444


Q ss_pred             CcHHHHHHHHHHHH----HcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch
Q 005632          204 ADLSVIDLLVAILM----ENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI  276 (687)
Q Consensus       204 ~~~~~~~~la~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  276 (687)
                      ...    .+...+.    ..+.++.+...+......    .+....+++.+|.++...|++++|+..|++++..+|.
T Consensus       173 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  241 (259)
T d1xnfa_         173 WGW----NIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH  241 (259)
T ss_dssp             THH----HHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred             hhh----hHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            321    1222221    122333333433333333    3344445555666666666666666666666555553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=4.4e-18  Score=169.02  Aligned_cols=301  Identities=15%  Similarity=0.065  Sum_probs=181.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----SALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------I  136 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~  136 (687)
                      ++.....|.+++..|++++|+..+++++...|.+     ..++..+|.++...|++++|+..|++++...+..      .
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            3344444555555555555555555555544443     1234445555555555555555555555432211      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCc---
Q 005632          137 SLRIHLASFYVEIGDYEKAAESYEQIQKLFPD--------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDAD---  205 (687)
Q Consensus       137 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---  205 (687)
                      ..+..++.++...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.++....+....   
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  171 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  171 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence            34455566666666666666666666543211        1234556677777777777777777777766544322   


Q ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCC---chHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCch---hhH
Q 005632          206 LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKE---LPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAI---DHA  279 (687)
Q Consensus       206 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~  279 (687)
                      ...+...+..+...+++.++...+.++.........   ....++...+.++...|++++|...+++++...+.   ...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  251 (366)
T d1hz4a_         172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  251 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence            234556667777777777777777777666432222   23345666777777888888888888877654332   234


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhhc-----cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCC--------
Q 005632          280 DLITEVADTLMSLGHSNSALKYYHFLETN-----AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFED--------  346 (687)
Q Consensus       280 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------  346 (687)
                      ..+..+|.++...|++++|+..+++++..     ..|....++..+|.+|...|++++|+..+++++++.+.        
T Consensus       252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~  331 (366)
T d1hz4a_         252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV  331 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHH
Confidence            45667788888888888888888877643     13445677888888888889988898888888887542        


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHH
Q 005632          347 -NIDARLTLASLLLEEAKEEEAI  368 (687)
Q Consensus       347 -~~~~~~~la~~~~~~g~~~~A~  368 (687)
                       .......+...+...++.+++.
T Consensus       332 ~~~~~~~~~~~~l~~~~~l~e~e  354 (366)
T d1hz4a_         332 IEGEAMAQQLRQLIQLNTLPELE  354 (366)
T ss_dssp             TTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHhcCCChHHH
Confidence             1233344445555556655554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.1e-18  Score=171.46  Aligned_cols=313  Identities=10%  Similarity=0.039  Sum_probs=247.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 005632          101 DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDI-----SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------  169 (687)
Q Consensus       101 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------  169 (687)
                      .++.....|.++...|++++|+..+++++...|++.     .++..+|.++...|++++|+..|+++++..+..      
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            456677789999999999999999999999998763     478889999999999999999999999875432      


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----C-cHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccC-CCc
Q 005632          170 VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD-----A-DLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSG-KEL  242 (687)
Q Consensus       170 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~  242 (687)
                      ..++..++.++...|++..|...+.+++...+..     . ....+..+|.++...|+++.+...+.++....+.. ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence            3567889999999999999999999998753221     1 12356678999999999999999999999874422 233


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhC------chhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccC---CCc
Q 005632          243 PLKLKVKAGICYLRLGNMEKAEILFADLQWKN------AIDHADLITEVADTLMSLGHSNSALKYYHFLETNAG---TDN  313 (687)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~  313 (687)
                      ....+...+..+...+++..+...+.++....      +......+..++.++...|++++|...++++.....   +..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  250 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  250 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence            45667788999999999999999998865432      223456778889999999999999999999886622   223


Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHhcCCCCcCCcccCCCCCC
Q 005632          314 GYLYLKLAECYLSLKERAHAIMFFYKALDR------FEDNIDARLTLASLLLEEAKEEEAITLLSPPKDLDSLDMNSDKS  387 (687)
Q Consensus       314 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  387 (687)
                      ...+..+|.++...|++++|...+++++..      .|....++..+|.++...|++++|++.+++++...+....   .
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~---~  327 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF---I  327 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC---C
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCc---H
Confidence            556778999999999999999999999854      3455778999999999999999999999998876554321   1


Q ss_pred             ChhhhhHHHHHHHHHHHHHcCCchHHHHH
Q 005632          388 NPWWLNEKIIMKLCHIYRAKGMPEDFVDA  416 (687)
Q Consensus       388 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~  416 (687)
                      ..+.........+...+...++.+++...
T Consensus       328 ~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         328 SHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            11122234555666667777888877654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.8e-19  Score=167.84  Aligned_cols=149  Identities=13%  Similarity=0.059  Sum_probs=123.4

Q ss_pred             ChHHHHHHHHHHhccC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005632           83 NHKSAFDFYVIAAHLS----PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAES  158 (687)
Q Consensus        83 ~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  158 (687)
                      +.+.|+..+.+++...    |....+++.+|.+|...|++++|+..|++++.++|+++.++..+|.++...|++++|+..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            4556777777777643    345678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHH
Q 005632          159 YEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQ  233 (687)
Q Consensus       159 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  233 (687)
                      |+++++++|+++.++..+|.++...|++++|+..++++++.+|.+..  ....++..+...+..+.+........
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--RSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH--HHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999998765  44455666666665555544444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.6e-16  Score=126.43  Aligned_cols=114  Identities=15%  Similarity=0.184  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..+..+|..++..|+|++|+..|+++++.+|.++.+|..+|.++...|++++|+..+.+++.++|+++.+|+.+|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            35667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      ..+|++++|+..|+++++.+|+++.++..++.+.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999999999988888887764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.9e-15  Score=131.33  Aligned_cols=134  Identities=13%  Similarity=0.117  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      ++..++.+|..++..|+|++|++.|+++   .|.++.+++.+|.++..+|++++|+..|+++++++|+++.+|..+|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            4556778899999999999999999864   5567889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKD----------------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN  169 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  169 (687)
                      ..+|++++|+..|++++...|.+                ..+++.+|.++...|++++|++.+.+++.+.|..
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999999999999998765543                3567788888888888888888888888877764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-15  Score=127.98  Aligned_cols=124  Identities=15%  Similarity=0.160  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..+..+|..++..|+|++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+|..+|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            45667788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV--EIGDYEKAAE  157 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~--~~g~~~~A~~  157 (687)
                      ..|++++|+..+++++.++|+++.++..++.+..  ..+.+++|+.
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888887777665543  2333444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-15  Score=120.31  Aligned_cols=111  Identities=19%  Similarity=0.160  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      -+...|..++..|++++|+.+|.+++..+|+++.+|..+|.++...|++++|+..+.+++..+|+++.+++.+|.++..+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            34566788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLF  180 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~  180 (687)
                      |++++|+..|+++++.+|+++.++..++.+.
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            8888888888888888888887777776654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.5e-14  Score=137.71  Aligned_cols=162  Identities=14%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 005632           74 LGLAHSALGNHKSAFDFYVIAAHLS------PKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKD------ISLRIH  141 (687)
Q Consensus        74 l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~  141 (687)
                      .|.+|...|++++|+++|.+++++.      +.....+..+|.+|...|++++|+.+|++++.+.+..      ..++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            3566666666677766666666542      1223445566666666666666666666666543322      234555


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH-----HHH
Q 005632          142 LASFYVE-IGDYEKAAESYEQIQKLFPD------NVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL-----SVI  209 (687)
Q Consensus       142 la~~~~~-~g~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~  209 (687)
                      +|.++.. .|++++|++.|++++++.+.      ...++..+|.++..+|++++|+..|++++...+.....     ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            5555533 35666666666665544221      12334555555555555555555555555554443210     123


Q ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHH
Q 005632          210 DLLVAILMENNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       210 ~~la~~~~~~~~~~~A~~~~~~~~~~  235 (687)
                      ...+.++...|+++.|...++++.+.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            34444444455555555555554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=6e-14  Score=134.87  Aligned_cols=224  Identities=10%  Similarity=-0.018  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc--------------CChHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHH
Q 005632           50 FEQAISLLKEVVRLSPNLPETYNTLGLAHSAL--------------GNHKSAFDFYVIAAHL-SPKDSALWKQLLTFAVQ  114 (687)
Q Consensus        50 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~  114 (687)
                      .+.+..+|++++...|.++.+|+..+......              +..++|...|++++.. .|.+...|..++..+..
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45677889999999999999988877655432              2357788888888864 67778888888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDI-SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL-KCGQTARSIGI  192 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~g~~~~A~~~  192 (687)
                      .|+++.|...|++++...|.+. .+|..++......|+++.|...|.++++..|.+...+...+.... ..|+.+.|..+
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            8888888888888888887664 467788888888888888888888888888888888887777654 35788888888


Q ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 005632          193 LEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQW  272 (687)
Q Consensus       193 ~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  272 (687)
                      |++++...|+++.  .|...+......|+++.|..+|++++...+.+......++..........|+.+.+..+++++.+
T Consensus       192 ~e~~l~~~p~~~~--~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         192 FELGLKKYGDIPE--YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHTTCHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8888888888765  67788888888888888888888888763322223345566666666677888888887777766


Q ss_pred             hCc
Q 005632          273 KNA  275 (687)
Q Consensus       273 ~~~  275 (687)
                      ..|
T Consensus       270 ~~~  272 (308)
T d2onda1         270 AFR  272 (308)
T ss_dssp             HTT
T ss_pred             HCc
Confidence            555

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.4e-14  Score=123.79  Aligned_cols=123  Identities=20%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..+...|..++..|+|++|+.+|+++++++|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34556677777888888888888888888888888888888888888888888888888888888887778888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCChHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL--KCGQTARSIG  191 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--~~g~~~~A~~  191 (687)
                      .|++++|+..|++++.++|+++.++..++.+..  ..+.+++|+.
T Consensus        91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888888888888777777766655532  2333444443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1.4e-15  Score=136.73  Aligned_cols=108  Identities=11%  Similarity=0.082  Sum_probs=99.3

Q ss_pred             ChhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHH
Q 005632           31 SPGVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLT  110 (687)
Q Consensus        31 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  110 (687)
                      +|++..+..+|..++..|+|++|+..|++++..+|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            47788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISL  138 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~  138 (687)
                      ++..+|++++|+..|++++.++|++...
T Consensus        81 ~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            9999999999999999999987755433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-15  Score=156.18  Aligned_cols=275  Identities=13%  Similarity=0.028  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 005632          120 QAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKV  199 (687)
Q Consensus       120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  199 (687)
                      +|+++|++++.+.|+.++++..+|.++..+|++++|   |++++..+|+....+...+.+.  ...+..+++.++...+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            566777777777777777777777777777777665   6677777665544433222222  22355667777766654


Q ss_pred             CCCCCc-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhh
Q 005632          200 HPSDAD-LSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDH  278 (687)
Q Consensus       200 ~p~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  278 (687)
                      ...... ......++.+....+.|+.++..+.++...    .+.....+..+|..+...|++++|...+.+++...+   
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---  151 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV----DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC---  151 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------------------------CCHHHHHHH---
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH---
Confidence            322211 112233455666677788888888877777    667777888899999999999999988888775533   


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 005632          279 ADLITEVADTLMSLGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLL  358 (687)
Q Consensus       279 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  358 (687)
                      ..++..+|.++...|++++|+.+|++++.. .|+++..++.+|.++...|++.+|+.+|.+++...|..+.++.+|+.++
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            467889999999999999999999999988 8999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632          359 LEEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       359 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  423 (687)
                      .+..+..++       ........         .-...+..+..++...+.+++..+....++..
T Consensus       231 ~~~~~~~~~-------~~~~~~~~---------~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~  279 (497)
T d1ya0a1         231 SKALESRDE-------VKTKWGVS---------DFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQ  279 (497)
T ss_dssp             HHHTTSCCC-------CCSSCCHH---------HHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred             HHhhhhhhh-------hccccccc---------hHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Confidence            765432211       11111110         01124445555666777777776666655543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.9e-14  Score=122.78  Aligned_cols=131  Identities=11%  Similarity=0.073  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      .++..|..+...|++++|++.|.++   .|.++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            3456799999999999999999864   4567889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 005632          150 GDYEKAAESYEQIQKLFPDN----------------VDATKTGAQLFLKCGQTARSIGILEEYLKVHPSD  203 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  203 (687)
                      |++++|+..|++++...+.+                ..+++++|.++...|++++|+..+.+++...|+.
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999999999999875543                3677888999999999999999999988888764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3.4e-13  Score=129.48  Aligned_cols=222  Identities=13%  Similarity=0.060  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC
Q 005632          120 QAMYYIRQAIRAEPKDISLRIHLASFYVE--------------IGDYEKAAESYEQIQKL-FPDNVDATKTGAQLFLKCG  184 (687)
Q Consensus       120 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~--------------~g~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g  184 (687)
                      .+...|++|+...|.++.+|+..+..+..              .+..++|...|+++++. .|.+...+..++.++...|
T Consensus        34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~  113 (308)
T d2onda1          34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM  113 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            34455666666666666666555554332              23356777888888864 6777777888888888888


Q ss_pred             ChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-HcCCHHHH
Q 005632          185 QTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYL-RLGNMEKA  263 (687)
Q Consensus       185 ~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A  263 (687)
                      +++.|...|++++...|.+.. .+|..++......|+++.|...|++++..    .|.....+...+.... ..|+.+.|
T Consensus       114 ~~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~----~~~~~~~~~~~a~~e~~~~~~~~~a  188 (308)
T d2onda1         114 KYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKARED----ARTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             CHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTS----TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhccCHHHH
Confidence            888888888888887776643 25677777888888888888888888776    5555566666666543 35778888


Q ss_pred             HHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCCC----cHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 005632          264 EILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGTD----NGYLYLKLAECYLSLKERAHAIMFFYK  339 (687)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~  339 (687)
                      ..+|+.++...|. ++..|...+..+...|+++.|..+|++++.. .|.    ...+|..........|+.+.+..++++
T Consensus       189 ~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~-~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r  266 (308)
T d2onda1         189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-GSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8888888877764 7888888888888888888888888888765 332    334677777777788889989888888


Q ss_pred             HHHhcCCCH
Q 005632          340 ALDRFEDNI  348 (687)
Q Consensus       340 al~~~p~~~  348 (687)
                      +.+..|...
T Consensus       267 ~~~~~~~~~  275 (308)
T d2onda1         267 RFTAFREEY  275 (308)
T ss_dssp             HHHHTTTTT
T ss_pred             HHHHCcccc
Confidence            888888664

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=3.2e-14  Score=135.43  Aligned_cols=203  Identities=16%  Similarity=0.073  Sum_probs=158.0

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCC-----
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLS------PNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKD-----  101 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----  101 (687)
                      .+..+...|.++...|+|++|++.|.++++..      +....++..+|.+|...|++++|+.+|++++.+.+..     
T Consensus        36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~  115 (290)
T d1qqea_          36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR  115 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence            34556677999999999999999999999863      2235689999999999999999999999999876543     


Q ss_pred             -HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---
Q 005632          102 -SALWKQLLTFAVQ-KGDTAQAMYYIRQAIRAEPKD------ISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV---  170 (687)
Q Consensus       102 -~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---  170 (687)
                       ..++..+|.++.. .|++++|+.+|++++++.+..      ..++..+|.++..+|++++|+..|++++...+..+   
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~  195 (290)
T d1qqea_         116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ  195 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh
Confidence             4667888988865 699999999999998864322      45688899999999999999999999999887653   


Q ss_pred             ----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHH--cchHHHHHHHHHHHHHH
Q 005632          171 ----DATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADL---SVIDLLVAILME--NNAYEKTLQHIEHAQIV  235 (687)
Q Consensus       171 ----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~~~la~~~~~--~~~~~~A~~~~~~~~~~  235 (687)
                          ..+...+.++...|+++.|...++++.+.+|.....   ..+..++..+..  .+.+++|+..|+++.++
T Consensus       196 ~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence                456788899999999999999999999998865442   233344444443  34577887777665443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-15  Score=157.33  Aligned_cols=228  Identities=8%  Similarity=-0.079  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632           52 QAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRA  131 (687)
Q Consensus        52 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  131 (687)
                      +|+++|++++++.|+.++++..+|.++..+|++.+|   |++++..+|+....+...+.++  ...+..+++.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            799999999999999999999999999999999886   8999999998766654433332  22356788888887764


Q ss_pred             C--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHH
Q 005632          132 E--PKDI-SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSV  208 (687)
Q Consensus       132 ~--p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  208 (687)
                      .  ++.. .....++.+....+.|+.|+..+.+.+.++|++...+..+|..+...|++++|+..+.+++..+|.    .+
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~  154 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ----HC  154 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH----HH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH----HH
Confidence            4  2222 223345666777889999999999999999999999999999999999999999999999887753    36


Q ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHH
Q 005632          209 IDLLVAILMENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADT  288 (687)
Q Consensus       209 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~  288 (687)
                      +..+|.++...|++++|+.+|++++..    .|.....+..+|.++...|++.+|+.+|.+++...++ .+.++.+++.+
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l----~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~-~~~a~~nL~~~  229 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQL----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Confidence            889999999999999999999999999    8999999999999999999999999999999998886 89999999888


Q ss_pred             HHhcC
Q 005632          289 LMSLG  293 (687)
Q Consensus       289 ~~~~g  293 (687)
                      +....
T Consensus       230 ~~~~~  234 (497)
T d1ya0a1         230 LSKAL  234 (497)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            76543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.8e-13  Score=115.76  Aligned_cols=137  Identities=14%  Similarity=0.124  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..+...|..++..|+|++|+..|++++...|..........          .....         -...++..+|.+|.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~----------~~~~~---------~~~~~~~nla~~y~   73 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA----------QKAQA---------LRLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH----------HHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHH----------hhhch---------hHHHHHHHHHHHHH
Confidence            444557788999999999999999999988775432111000          00000         01234566777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARS  189 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A  189 (687)
                      ..|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...+.
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777777777777777777776655554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.6e-14  Score=127.25  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=74.9

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFY  146 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~  146 (687)
                      ++..+...|..++..|+|++|+..|++++.++|.++.+|..+|.+|...|++++|+..|+++++++|+++.+++.+|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34456667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          147 VEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       147 ~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      ..+|++++|+..|+++++++|++.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            777777777777777777665443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.47  E-value=1.8e-13  Score=108.46  Aligned_cols=93  Identities=20%  Similarity=0.225  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      .+..|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHH
Q 005632          117 DTAQAMYYIRQAI  129 (687)
Q Consensus       117 ~~~~A~~~~~~a~  129 (687)
                      ++++|++.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7777777776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.6e-13  Score=113.50  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      +..+...|..++..|++++|+..|.+++...|........          .......+         ...++.++|.+|.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~----------~~~~~~~~---------~~~~~~nla~~y~   73 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE----------EAQKAQAL---------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH----------HHHHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH----------HHhhhchh---------HHHHHHHHHHHHH
Confidence            3455667777888888888888888877766543221100          00000000         1235778999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHH
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTL  226 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~  226 (687)
                      .+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.  +...++.+....+...+..
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~--~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA--AKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999876  6778888877766665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.45  E-value=3.7e-13  Score=106.55  Aligned_cols=94  Identities=19%  Similarity=0.178  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      ..+.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.++..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHH
Q 005632          150 GDYEKAAESYEQIQ  163 (687)
Q Consensus       150 g~~~~A~~~~~~~~  163 (687)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            66666666666653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.45  E-value=8.1e-13  Score=111.38  Aligned_cols=133  Identities=15%  Similarity=0.086  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..+...|..++..|+|.+|+..|++++...|......             +.........+     ....+.++|.+|
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~~Nla~~~   77 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNI-----EISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhH-----HHHHHhhHHHHH
Confidence            345566789999999999999999999998765422110             00000001111     123566788888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKC  183 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~  183 (687)
                      +.+|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+..+.
T Consensus        78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888777777766544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.43  E-value=1.7e-12  Score=111.47  Aligned_cols=147  Identities=12%  Similarity=0.065  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +..+...|..++..|+|.+|+..|++++...|........          .....         .+....++.++|.||.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------~~~~~---------~~~~~~~~~Nla~~~~   75 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------ESKAS---------ESFLLAAFLNLAMCYL   75 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------HHHHH---------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh----------hhhhc---------chhHHHHHHhHHHHHH
Confidence            4566778999999999999999999988764432211000          00000         0111334566777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-HHHH
Q 005632          114 QKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR-SIGI  192 (687)
Q Consensus       114 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~-A~~~  192 (687)
                      .+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|.+++.++|+++.+...++.+....+...+ ....
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~  155 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRT  155 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777777666554433 3444


Q ss_pred             HHHHHHh
Q 005632          193 LEEYLKV  199 (687)
Q Consensus       193 ~~~~~~~  199 (687)
                      |.++++.
T Consensus       156 ~~~~f~~  162 (168)
T d1kt1a1         156 YANMFKK  162 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            4444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=8.1e-13  Score=113.90  Aligned_cols=134  Identities=15%  Similarity=0.128  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC
Q 005632           37 MLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG  116 (687)
Q Consensus        37 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  116 (687)
                      +...|..++..|+|++|+..|++++...+..                  .+...........|.....+..+|.++...|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence            4456888888888888888888887642211                  1111122333455666777777888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 005632          117 DTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTAR  188 (687)
Q Consensus       117 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~  188 (687)
                      ++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..+...++.+........+
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888887777777777665544443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6e-13  Score=106.31  Aligned_cols=109  Identities=7%  Similarity=-0.046  Sum_probs=87.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC---ChHHHHHHHHHHhccCCCC--HHHHHHHHHHHHH
Q 005632           40 EASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALG---NHKSAFDFYVIAAHLSPKD--SALWKQLLTFAVQ  114 (687)
Q Consensus        40 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~  114 (687)
                      .+..+...+++++|.+.|++++..+|.++.+++.+|.++...+   ++++|+..|++++..+|.+  ..+++.+|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            4566777888888888888888888888888888888887644   4556888888888877654  4578888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632          115 KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus       115 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      .|++++|+.+|+++++++|++..+...++.+...
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            8888888888888888888888887777665543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.40  E-value=3.5e-12  Score=109.52  Aligned_cols=147  Identities=14%  Similarity=0.084  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      +..+...|..++..|+|.+|+..|.+++...|.....            ..+.. ...      .+....++.++|.+|.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~------------~~~~~-~~~------~~~~~~~~~Nla~~~~   75 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL------------SEKES-KAS------ESFLLAAFLNLAMCYL   75 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC------------CHHHH-HHH------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc------------chhhh-hhc------chhHHHHHHhHHHHHH
Confidence            3456667777777777777777777776543321100            00000 000      0111346778999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHH-HH
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEK-TL  226 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~-A~  226 (687)
                      .+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..  +...++.+....+.+.+ ..
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~--~~~~l~~~~~~~~~~~e~~k  153 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA--ARLQIFMCQKKAKEHNERDR  153 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999876  67788888777766543 45


Q ss_pred             HHHHHHHHH
Q 005632          227 QHIEHAQIV  235 (687)
Q Consensus       227 ~~~~~~~~~  235 (687)
                      ..|.++.+.
T Consensus       154 k~~~~~f~~  162 (168)
T d1kt1a1         154 RTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            555555544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.39  E-value=3.6e-12  Score=107.31  Aligned_cols=133  Identities=17%  Similarity=0.128  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE  148 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~  148 (687)
                      ..+...|..++..|+|.+|+..|.+++...|.....             .+.........+     ...++.++|.+|..
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~~~~~~~-----~~~~~~Nla~~~~~   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------DDQILLDKKKNI-----EISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHHHhhhhH-----HHHHHhhHHHHHHH
Confidence            445667888888888888888888888765432110             000011111111     12467889999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcch
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNA  221 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~  221 (687)
                      +|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..  +...+..+..+.++
T Consensus        80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~--~~~~l~~~~~kl~~  150 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD--IRNSYELCVNKLKE  150 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999886  56677776655443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.39  E-value=9e-11  Score=109.66  Aligned_cols=229  Identities=14%  Similarity=0.055  Sum_probs=121.1

Q ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632           67 LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAMYYIRQAIRAEPKDISLRIHL  142 (687)
Q Consensus        67 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~l  142 (687)
                      ||.+++.+|..++..+++++|+++|+++.+.  ++..+++.||.+|..    ..++..|..+++.+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            3556666666666666666666666666543  355666666666655    44566666666665543  355555555


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005632          143 ASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME  218 (687)
Q Consensus       143 a~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~  218 (687)
                      |.++..    .++.+.|...++++....  ...+...++..+.....                                .
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~--------------------------------~  122 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKV--------------------------------V  122 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSS--------------------------------S
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCc--------------------------------c
Confidence            555543    345555666666555442  23334444444433111                                0


Q ss_pred             cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHh---
Q 005632          219 NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLR----LGNMEKAEILFADLQWKNAIDHADLITEVADTLMS---  291 (687)
Q Consensus       219 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~---  291 (687)
                      ......+...+.+...      ......+..+|.++..    ..+...+...++.+.+.   .++.+.+.+|.++..   
T Consensus       123 ~~~~~~a~~~~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~---g~~~A~~~lg~~y~~g~~  193 (265)
T d1ouva_         123 TRDFKKAVEYFTKACD------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEG  193 (265)
T ss_dssp             CCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCS
T ss_pred             cchhHHHHHHhhhhhc------ccccchhhhhhhhhccCCCcccccccchhhhhccccc---cccccccchhhhcccCcc
Confidence            1223333333333322      1222333444444443    23344444454444322   245566666666655   


Q ss_pred             -cCChHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH----hhcHHHHHHHHHHHHHhcC
Q 005632          292 -LGHSNSALKYYHFLETNAGTDNGYLYLKLAECYLS----LKERAHAIMFFYKALDRFE  345 (687)
Q Consensus       292 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  345 (687)
                       ..++++|+.+|+++.+.   .++.+++.+|.+|..    ..++++|..+|+++....+
T Consensus       194 ~~~d~~~A~~~~~~aa~~---g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         194 ATKNFKEALARYSKACEL---ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             cccchhhhhhhHhhhhcc---cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence             45677777777776643   356677777777764    3366777777777766543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.3e-12  Score=103.80  Aligned_cols=100  Identities=9%  Similarity=0.102  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHH-------HHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSA-------LWK  106 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~  106 (687)
                      +..+-.+|..++..|+|++|+.+|+++++.+|+++.++..+|.+|..+|++++|+..++++++++|.+..       ++.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4556678888888899999999999988888888888888888888888999998888888888776643       455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632          107 QLLTFAVQKGDTAQAMYYIRQAIRAEP  133 (687)
Q Consensus       107 ~la~~~~~~g~~~~A~~~~~~a~~~~p  133 (687)
                      .+|.++...+++++|+.+|++++..+|
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            566666777777777777777777665

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.38  E-value=1.6e-10  Score=107.92  Aligned_cols=224  Identities=17%  Similarity=0.120  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----cCChHHHHHHHHHHhccCCCCHHHHHHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSA----LGNHKSAFDFYVIAAHLSPKDSALWKQLL  109 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  109 (687)
                      +..++.+|..++..|++++|+++|+++.+.  +++.+++.+|.+|..    ..++..|..++..+...  .++.+...+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence            467889999999999999999999999875  588999999999998    67999999999998764  4778888888


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632          110 TFAVQ----KGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL  181 (687)
Q Consensus       110 ~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  181 (687)
                      .++..    ..+.+.|...++++....  ...+...++..+..    ......|...+.+...  +.+...+..+|.++.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~~  153 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh--hhhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhhc
Confidence            88765    468899999999998864  56667777777765    4557778888877665  466788889999888


Q ss_pred             H----cCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 005632          182 K----CGQTARSIGILEEYLKVHPSDADLSVIDLLVAILME----NNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGIC  253 (687)
Q Consensus       182 ~----~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (687)
                      .    ..+...+..+++.+.+.  .++  .+.+.+|.++..    ..++++|+.+|+++.+.      ..+.+.+.+|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~--g~~--~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~------g~~~a~~~LG~~  223 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACDL--KDS--PGCFNAGNMYHHGEGATKNFKEALARYSKACEL------ENGGGCFNLGAM  223 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHT--TCH--HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHH
T ss_pred             cCCCcccccccchhhhhccccc--ccc--ccccchhhhcccCcccccchhhhhhhHhhhhcc------cCHHHHHHHHHH
Confidence            6    34556666677766553  333  367788888876    56788888888887765      235566777777


Q ss_pred             HHH----cCCHHHHHHHHHHHhhhCc
Q 005632          254 YLR----LGNMEKAEILFADLQWKNA  275 (687)
Q Consensus       254 ~~~----~~~~~~A~~~~~~~~~~~~  275 (687)
                      |..    ..++++|..+|+++.....
T Consensus       224 y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         224 QYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            764    3367777777777765543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-12  Score=104.07  Aligned_cols=108  Identities=11%  Similarity=0.025  Sum_probs=70.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Q 005632           74 LGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKG---DTAQAMYYIRQAIRAEPKD--ISLRIHLASFYVE  148 (687)
Q Consensus        74 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~  148 (687)
                      ++..+...+++++|.+.|++++..+|+++.+++++|.++...+   ++++|+..|++++..+|.+  ..+++.+|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            4455566666777777777777777777777777777766533   3445677777766665543  3466667777777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632          149 IGDYEKAAESYEQIQKLFPDNVDATKTGAQLFL  181 (687)
Q Consensus       149 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~  181 (687)
                      .|++++|+.+|+++++++|++..+...++.+..
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            777777777777777777777666665555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.35  E-value=1.2e-12  Score=108.88  Aligned_cols=73  Identities=14%  Similarity=-0.001  Sum_probs=51.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCh----------HHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 005632           44 QYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNH----------KSAFDFYVIAAHLSPKDSALWKQLLTFAV  113 (687)
Q Consensus        44 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~  113 (687)
                      +-+.+.|++|+..|+++++.+|+++++++.+|.++...+++          ++|+..|+++++++|+++.+++.+|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34556688999999999999999999999999888765444          55666666666666666666666666555


Q ss_pred             HcC
Q 005632          114 QKG  116 (687)
Q Consensus       114 ~~g  116 (687)
                      .+|
T Consensus        87 ~~g   89 (145)
T d1zu2a1          87 SFA   89 (145)
T ss_dssp             HHH
T ss_pred             Hcc
Confidence            443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.8e-12  Score=101.54  Aligned_cols=98  Identities=16%  Similarity=0.192  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHH
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDIS-------LRIHL  142 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~-------~~~~l  142 (687)
                      .+..+|..++..|+|++|+.+|+++++++|+++.++..+|.+|..+|++++|+..++++++++|.++.       ++..+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            44556666777777777777777777777766666666777777777777777777776666655432       34445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 005632          143 ASFYVEIGDYEKAAESYEQIQKLFP  167 (687)
Q Consensus       143 a~~~~~~g~~~~A~~~~~~~~~~~p  167 (687)
                      |.++...+++++|+.+|++++..++
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            5555555666666666666665554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=2.3e-12  Score=107.10  Aligned_cols=103  Identities=13%  Similarity=0.053  Sum_probs=76.1

Q ss_pred             HHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           78 HSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK----------GDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        78 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      +.+.+.|++|+..|+++++++|+++.++..+|.++...          +.+++|+..|+++++++|+++.+++++|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            45567788888888888888888888888888888754          34567778888888888888888888887776


Q ss_pred             HcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005632          148 EIGD-----------YEKAAESYEQIQKLFPDNVDATKTGAQLF  180 (687)
Q Consensus       148 ~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~~la~~~  180 (687)
                      .+|+           +++|+++|+++++++|++..++..++.+.
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            6543           46666667777777776666666665554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=5.8e-12  Score=108.44  Aligned_cols=136  Identities=15%  Similarity=0.176  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 005632           70 TYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEI  149 (687)
Q Consensus        70 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~  149 (687)
                      .+...|..++..|++.+|+..|.+++...+..                  .+...........|....++.++|.++...
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhh
Confidence            34567888889999999999998887643221                  111112233345566778899999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHH
Q 005632          150 GDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKT  225 (687)
Q Consensus       150 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A  225 (687)
                      |++++|+..|.++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..  +...++.+........++
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~--~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA--IQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999875  666777777666555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4e-10  Score=85.36  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHH
Q 005632           35 TKMLGEASLQYAYGNFEQAISLLKEVVRLSPN-------LPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQ  107 (687)
Q Consensus        35 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  107 (687)
                      ...|..|..++..|+|++|+..|+++++..|.       .+.++..+|.++...|++++|+..|+++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            44566666666666666666666666655332       23455555555555566666665555555555555555555


Q ss_pred             HHHH
Q 005632          108 LLTF  111 (687)
Q Consensus       108 la~~  111 (687)
                      ++.+
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.04  E-value=5.2e-10  Score=94.27  Aligned_cols=99  Identities=17%  Similarity=0.103  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCch------------HHHHHHHHHHHHcCChHHHHHHHHHHhccCCC-
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLP------------ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-  100 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-  100 (687)
                      +...+..|..++..|+|++|+..|++++++.|+.+            .+|..+|.+|..+|++++|+..+++++.+.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44566778888899999999999999998877643            35666777777777777777777776654321 


Q ss_pred             ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 005632          101 ----------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAE  132 (687)
Q Consensus       101 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  132 (687)
                                ...+++.+|.+|..+|++++|+..|++++++.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  130 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                      12245555666666666666666666665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=6.3e-10  Score=84.27  Aligned_cols=78  Identities=15%  Similarity=0.122  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPK-------DSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI  140 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  140 (687)
                      ++-++.+|.+++..|+|.+|+.+|++++++.|.       ...++..+|.++...|++++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            344556666666666666666666666655332       2345555555566666666666666666555555555555


Q ss_pred             HHHHH
Q 005632          141 HLASF  145 (687)
Q Consensus       141 ~la~~  145 (687)
                      +++.+
T Consensus        85 Nl~~~   89 (95)
T d1tjca_          85 NLKYF   89 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.01  E-value=1.8e-10  Score=105.51  Aligned_cols=130  Identities=18%  Similarity=0.116  Sum_probs=98.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHH
Q 005632           41 ASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQ  120 (687)
Q Consensus        41 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  120 (687)
                      +..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++...+..++.++...+..++
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            55677888888888888888888888888888888888888888888888888888888888888888887776666555


Q ss_pred             HHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 005632          121 AMYYIRQAIR-AEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNV  170 (687)
Q Consensus       121 A~~~~~~a~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  170 (687)
                      +...+.+... ..|.....+...+..+...|++++|...+.++.+..|..+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            5443333222 2344455566677778888888888888888888877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.94  E-value=9.7e-10  Score=92.59  Aligned_cols=57  Identities=12%  Similarity=-0.046  Sum_probs=32.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHhccCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 005632           75 GLAHSALGNHKSAFDFYVIAAHLSPKDS------------ALWKQLLTFAVQKGDTAQAMYYIRQAIRA  131 (687)
Q Consensus        75 ~~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~  131 (687)
                      |..++..|+|++|+..|++++++.|+.+            .+|.++|.+|..+|++++|+..+++++.+
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            5566666666666666666666554422            33445555555555555555555555543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.90  E-value=1.2e-09  Score=100.07  Aligned_cols=128  Identities=13%  Similarity=0.128  Sum_probs=80.5

Q ss_pred             HHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005632           77 AHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAA  156 (687)
Q Consensus        77 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~  156 (687)
                      -.+..|++++|+..++++++.+|++..++..++.+++..|++++|+..|+++++++|++..++..++.++...+...++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            34556777777777777777777777777777777777777777777777777777777666666666665555554444


Q ss_pred             HHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC
Q 005632          157 ESYEQIQK-LFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDA  204 (687)
Q Consensus       157 ~~~~~~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  204 (687)
                      ..+.+... ..|.....+...+.++...|++++|...+.++.+..|..+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            33322211 1233344555566666666777777777777766666554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=1.8e-08  Score=86.06  Aligned_cols=119  Identities=14%  Similarity=0.030  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 005632           33 GVTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFA  112 (687)
Q Consensus        33 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  112 (687)
                      .+..++..|..+...|++++|+..|.+++.+.++.....+..       +.+-     ......+.+....++..++.++
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w~-----~~~r~~l~~~~~~a~~~la~~~   77 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQFV-----EPFATALVEDKVLAHTAKAEAE   77 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STTH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778888888888888888888888777654321111       1110     1111222334456677777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005632          113 VQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQ  163 (687)
Q Consensus       113 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  163 (687)
                      ...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++.
T Consensus        78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=5.2e-08  Score=83.14  Aligned_cols=118  Identities=10%  Similarity=-0.055  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005632           68 PETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYV  147 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~  147 (687)
                      ...+...|......|++++|...|.+++.+.+........       .+.+     .......+.+....++..++.++.
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~-------~~~w-----~~~~r~~l~~~~~~a~~~la~~~~   78 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-------DFQF-----VEPFATALVEDKVLAHTAKAEAEI   78 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-------TSTT-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc-------chHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777788888888888888888776654321110       0110     111122222334556777777788


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005632          148 EIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYL  197 (687)
Q Consensus       148 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  197 (687)
                      ..|++++|+..+++++..+|.+..++..++.++...|++.+|+..|+++.
T Consensus        79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888887777763

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=0.00031  Score=69.55  Aligned_cols=359  Identities=9%  Similarity=-0.014  Sum_probs=200.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHH---HHHH
Q 005632           34 VTKMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWK---QLLT  110 (687)
Q Consensus        34 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~  110 (687)
                      -...|..|...+..|++.++..+..++ +..|-.+-+-+.............+    +...++..|+.+....   ....
T Consensus         6 ~r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~~----i~~Fl~~~p~~P~~~~lr~~~l~   80 (450)
T d1qsaa1           6 QRSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAVT----VTNFVRANPTLPPARTLQSRFVN   80 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHHH----HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHHHHHHHHHHhccccCCHHH----HHHHHHHCCCChhHHHHHHHHHH
Confidence            355778899999999999888877775 4445322222211111112233333    3444556777765432   3344


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------HHH
Q 005632          111 FAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDN------------------VDA  172 (687)
Q Consensus       111 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------------------~~~  172 (687)
                      .+...+++...+..+    ...|.+......++.+....|+..+|...+..+.......                  +..
T Consensus        81 ~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~  156 (450)
T d1qsaa1          81 ELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLA  156 (450)
T ss_dssp             HHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHH
Confidence            556667776644433    3457777777888888888899888888777666543222                  222


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHH-------------HHhC-----------CCCCcHHHHHHHHHHHHHcchHHHHHHH
Q 005632          173 TKTGAQLFLKCGQTARSIGILEEY-------------LKVH-----------PSDADLSVIDLLVAILMENNAYEKTLQH  228 (687)
Q Consensus       173 ~~~la~~~~~~g~~~~A~~~~~~~-------------~~~~-----------p~~~~~~~~~~la~~~~~~~~~~~A~~~  228 (687)
                      +..........|++..|...+..+             +..+           +.+.........+..-....+.+.|...
T Consensus       157 ~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~  236 (450)
T d1qsaa1         157 YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLM  236 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHH
Confidence            333444555556655554433211             1111           1111111122233333445677778887


Q ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 005632          229 IEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETN  308 (687)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  308 (687)
                      +...........+........++......+..+.+...+......... .. .....+......+++..+...+..+...
T Consensus       237 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~w~~~~al~~~~~~~~~~~~~~l~~~  314 (450)
T d1qsaa1         237 IPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TS-LIERRVRMALGTGDRRGLNTWLARLPME  314 (450)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HH-HHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred             HHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc-hH-HHHHHHHHHHHcCChHHHHHHHHhcCcc
Confidence            777665522111122222233333334456677777777766554332 22 2222333455678899988888766533


Q ss_pred             cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCC-----------------------------HHHHHHHHHHHH
Q 005632          309 AGTDNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDN-----------------------------IDARLTLASLLL  359 (687)
Q Consensus       309 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------------------------~~~~~~la~~~~  359 (687)
                       ....+...+-+|..+...|+.++|...|..+... ++.                             ...-...+..+.
T Consensus       315 -~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~  392 (450)
T d1qsaa1         315 -AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELM  392 (450)
T ss_dssp             -GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHH
Confidence             3456778889999999999999999999987642 210                             011123455566


Q ss_pred             HcCCHHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHH
Q 005632          360 EEAKEEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFP  419 (687)
Q Consensus       360 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  419 (687)
                      ..|+...|...+..+....+.              .-...++.+..+.|.++.|+....+
T Consensus       393 ~~g~~~~A~~e~~~l~~~~~~--------------~~~~~la~lA~~~g~~~~aI~a~~~  438 (450)
T d1qsaa1         393 YWNLDNTARSEWANLVKSKSK--------------TEQAQLARYAFNNQWWDLSVQATIA  438 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCH--------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCchHHHHHHHHHHhCCCH--------------HHHHHHHHHHHHCCChhHHHHHHHH
Confidence            666666666655544332111              2445666666777777777654443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=9.8e-06  Score=61.84  Aligned_cols=73  Identities=7%  Similarity=-0.016  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHcC---ChHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005632           68 PETYNTLGLAHSALG---NHKSAFDFYVIAAHLSPKDS-ALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI  140 (687)
Q Consensus        68 ~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  140 (687)
                      +.+.|..|+++.+..   +..+++.+++.++..+|.+. +.++.+|..|++.|+|++|..+++++++.+|++..+..
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            344555555555432   23355555555555554432 45555555555555555555555555555555554443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=3.4e-05  Score=61.69  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 005632           49 NFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQ----KGDTAQAMYY  124 (687)
Q Consensus        49 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  124 (687)
                      |+++|+.+|+++.+..  ++.+.+.++.  ....+.++|+.+++++.+.  +++.+.+.+|.+|..    ..++++|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            6677777777777653  4555555553  2345666677666666543  456666666666654    3456666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 005632          125 IRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAESYEQIQKL  165 (687)
Q Consensus       125 ~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~  165 (687)
                      |+++.+.  .++.+.+.+|.+|..    ..++.+|+.+|+++.+.
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            6666653  355666666666655    34566666666666554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.02  E-value=5e-05  Score=60.68  Aligned_cols=110  Identities=18%  Similarity=0.210  Sum_probs=67.9

Q ss_pred             ChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 005632           83 NHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVE----IGDYEKAAES  158 (687)
Q Consensus        83 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~  158 (687)
                      |+++|+.+|+++.+..  ++.+...++.  ....+.++|+.+++++.+.  .++.+.+.+|.+|..    ..++.+|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            5667777777776653  3344444443  2345667777777776653  466666777776664    3456677777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhC
Q 005632          159 YEQIQKLFPDNVDATKTGAQLFLK----CGQTARSIGILEEYLKVH  200 (687)
Q Consensus       159 ~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  200 (687)
                      |+++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+..
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            7776654  456666666666665    346666666666665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=4.2e-05  Score=58.25  Aligned_cols=75  Identities=8%  Similarity=-0.019  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005632          102 SALWKQLLTFAVQKG---DTAQAMYYIRQAIRAEPKDI-SLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTG  176 (687)
Q Consensus       102 ~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  176 (687)
                      ....+.+|.++....   +.++++..++.++..+|.+. +.++.+|..|...|+|++|..+++++++++|++..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            445555555555443   23455555555555555442 4555555555555566666555555555555555554433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.50  E-value=0.036  Score=50.93  Aligned_cols=141  Identities=18%  Similarity=0.144  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHc
Q 005632           36 KMLGEASLQYAYGNFEQAISLLKEVVRLSPNLPETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQK  115 (687)
Q Consensus        36 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  115 (687)
                      ..-.-|..++..|.|+.|..+|...        .-+-.+..++...+++..|.+.+.+.     +++..|..+...+...
T Consensus        16 d~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~   82 (336)
T d1b89a_          16 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG   82 (336)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhC
Confidence            3445577888999999999999743        23445567788899999999988776     5677888888888887


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 005632          116 GDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILE  194 (687)
Q Consensus       116 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  194 (687)
                      ....-|..+ ..   ....+++-.......+...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-++.+.
T Consensus        83 ~e~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~  156 (336)
T d1b89a_          83 KEFRLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLE  156 (336)
T ss_dssp             TCHHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred             cHHHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHH
Confidence            776554221 10   112355555667788888999999999999998888888888888888776643 344444443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.057  Score=52.56  Aligned_cols=317  Identities=9%  Similarity=-0.043  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHH
Q 005632           69 ETYNTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRI---HLASF  145 (687)
Q Consensus        69 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~---~la~~  145 (687)
                      ...|..+.-.+..|++.++....... +-.|-.+  |...-.+....++..  ...+...++.+|+.|....   .....
T Consensus         7 r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~p--Yl~~~~l~~~~~~~~--~~~i~~Fl~~~p~~P~~~~lr~~~l~~   81 (450)
T d1qsaa1           7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYP--YLEYRQITDDLMNQP--AVTVTNFVRANPTLPPARTLQSRFVNE   81 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHH--HHHHHHHHHTGGGCC--HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHH--HHHHHHHHhccccCC--HHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence            45677788889999999888776665 3344222  333333222222211  1235667778999876533   33345


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHH---------
Q 005632          146 YVEIGDYEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAIL---------  216 (687)
Q Consensus       146 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~---------  216 (687)
                      +...+++...+..+    ...|.+......++.+....|+.++|...+..+.......+.  .+..+-..+         
T Consensus        82 L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~lt~~  155 (450)
T d1qsaa1          82 LARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQDPL  155 (450)
T ss_dssp             HHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSCHH
T ss_pred             HHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCCCCHH
Confidence            56777776655433    346778888888999999999999999988887766555543  222222222         


Q ss_pred             ---------HHcchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHH
Q 005632          217 ---------MENNAYEKTLQHIEHAQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVAD  287 (687)
Q Consensus       217 ---------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~  287 (687)
                               ...|++..|...+..+       ++...........+.   .+.......... ....+  ........+.
T Consensus       156 ~~~~R~~~~l~~~~~~~a~~l~~~l-------~~~~~~~~~a~~~l~---~~p~~~~~~~~~-~~~~~--~~~~~~~~~l  222 (450)
T d1qsaa1         156 AYLERIRLAMKAGNTGLVTVLAGQM-------PADYQTIASAIISLA---NNPNTVLTFART-TGATD--FTRQMAAVAF  222 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTC-------CGGGHHHHHHHHHHH---HCGGGHHHHHHH-SCCCH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChhhHHHHHhhC-------ChhHHHHHHHHHHHH---hChHhHHHHHhc-CCCCh--hhhHHHHHHH
Confidence                     2333333332222110       111111100011111   111111111111 11111  2222333444


Q ss_pred             HHHhcCChHHHHHHHHHhhhccCCCcHHHHHH----HHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 005632          288 TLMSLGHSNSALKYYHFLETNAGTDNGYLYLK----LAECYLSLKERAHAIMFFYKALDRFEDNIDARLTLASLLLEEAK  363 (687)
Q Consensus       288 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  363 (687)
                      .-....+.+.|...+...... .+.....+..    ++..+...+..+.+...+........+. .....++......++
T Consensus       223 ~rla~~d~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~w~~~~al~~~~  300 (450)
T d1qsaa1         223 ASVARQDAENARLMIPSLAQA-QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTGD  300 (450)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTC
T ss_pred             HHHhccChhHHHHHHHhhhhc-ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch-HHHHHHHHHHHHcCC
Confidence            444556889999999887654 3333332222    2233334566788888887776555443 333334444566789


Q ss_pred             HHHHHHhcCCCCcCCcccCCCCCCChhhhhHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 005632          364 EEEAITLLSPPKDLDSLDMNSDKSNPWWLNEKIIMKLCHIYRAKGMPEDFVDAIFPLVCE  423 (687)
Q Consensus       364 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  423 (687)
                      +..+...+..+... +..           ..+..|.+|+.+...|+.++|...|..+...
T Consensus       301 ~~~~~~~~~~l~~~-~~~-----------~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~  348 (450)
T d1qsaa1         301 RRGLNTWLARLPME-AKE-----------KDEWRYWQADLLLERGREAEAKEILHQLMQQ  348 (450)
T ss_dssp             HHHHHHHHHHSCTT-GGG-----------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHhcCcc-ccc-----------HHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence            99999988765332 222           2357799999999999999999998887643

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.034  Score=51.12  Aligned_cols=270  Identities=11%  Similarity=0.027  Sum_probs=138.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHhccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 005632           72 NTLGLAHSALGNHKSAFDFYVIAAHLSPKDSALWKQLLTFAVQKGDTAQAMYYIRQAIRAEPKDISLRIHLASFYVEIGD  151 (687)
Q Consensus        72 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~  151 (687)
                      -..|..+...|.|+.|..+|...-.        +..+..++...++++.|.+++.+.     +++.+|......+.....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e   84 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE   84 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcH
Confidence            3456667777888888887765321        445667777788888887777655     466777777777777666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcchHHHHHHHHHH
Q 005632          152 YEKAAESYEQIQKLFPDNVDATKTGAQLFLKCGQTARSIGILEEYLKVHPSDADLSVIDLLVAILMENNAYEKTLQHIEH  231 (687)
Q Consensus       152 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  231 (687)
                      ..-|.-+ ..   ....+++-...+...|...|.+++.+.+++..+...+.+..  .+..++.+|.+.+ .++-.+.++.
T Consensus        85 ~~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~--~~~~L~~lyak~~-~~kl~e~l~~  157 (336)
T d1b89a_          85 FRLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG--MFTELAILYSKFK-PQKMREHLEL  157 (336)
T ss_dssp             HHHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH--HHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HHHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchH--HHHHHHHHHHHhC-hHHHHHHHHh
Confidence            5443211 10   01124455556667777778888888888877665554443  5666776666543 2333333322


Q ss_pred             HHHHhccCCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhCchhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhccCC
Q 005632          232 AQIVRFSGKELPLKLKVKAGICYLRLGNMEKAEILFADLQWKNAIDHADLITEVADTLMSLGHSNSALKYYHFLETNAGT  311 (687)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  311 (687)
                      ....                      =+.++++..+++         ...|..+..+|.+.|+++.|+..+-     .+|
T Consensus       158 ~s~~----------------------y~~~k~~~~c~~---------~~l~~elv~Ly~~~~~~~~A~~~~i-----~~~  201 (336)
T d1b89a_         158 FWSR----------------------VNIPKVLRAAEQ---------AHLWAELVFLYDKYEEYDNAIITMM-----NHP  201 (336)
T ss_dssp             HSTT----------------------SCHHHHHHHHHT---------TTCHHHHHHHHHHTTCHHHHHHHHH-----HST
T ss_pred             cccc----------------------CCHHHHHHHHHH---------cCChHHHHHHHHhcCCHHHHHHHHH-----Hcc
Confidence            1100                      122223322222         1223445666777777777776662     123


Q ss_pred             CcHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhcCCCHHHH----------HHHHHHHHHcCCHHHHHHhcCCCCcCCccc
Q 005632          312 DNGYLYLKLAECYLSLKERAHAIMFFYKALDRFEDNIDAR----------LTLASLLLEEAKEEEAITLLSPPKDLDSLD  381 (687)
Q Consensus       312 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  381 (687)
                      .++.-....-.++.+..+.+..-+...-.++..|....-.          ..+.....+.++..-...+++...+.+   
T Consensus       202 ~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---  278 (336)
T d1b89a_         202 TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---  278 (336)
T ss_dssp             TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---
T ss_pred             hhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---
Confidence            2222223333445555555554444444455455432111          123333444444444444444432221   


Q ss_pred             CCCCCCChhhhhHHHHHHHHHHHHHcCCch
Q 005632          382 MNSDKSNPWWLNEKIIMKLCHIYRAKGMPE  411 (687)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  411 (687)
                                 ...+...++.+|...++++
T Consensus       279 -----------~~~vn~al~~lyie~~d~~  297 (336)
T d1b89a_         279 -----------NKSVNESLNNLFITEEDYQ  297 (336)
T ss_dssp             -----------CHHHHHHHHHHHHHTTCHH
T ss_pred             -----------hHHHHHHHHHHHhCcchhH
Confidence                       1147888899999888853