Citrus Sinensis ID: 005673

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680----
MGQFQAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED
cccccccHHHHHccccHHHHHHHcHHHHHcccccccHHHHHHHHHcccccccccccEEEEEEccccHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccccEEEccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
ccHccHHHHHHHHHccHHHHHHHccHHHccccccccccHHHHccccccccccccEEEEEEEccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHcccccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccHccHHHHHHHHHHHHHHccccccHHHEEcccccccccccccHHHHHHHHHHHHHHccccEEEcccccEEEEEcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHEHHHHHHHHHcHEEcccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHEHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcccccHHHHHcccc
mgqfqaggflvssnghavaeetelsenvysmndyaDTASLLEQdiragpsnqsglrFISGIICKSKVLRFERMLFRATRgnmlfnqapadeeimdpvTAEMVEKTIFVVFFSGEQARTKILKICEafgancypvsedltKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTkkclvgegwcpiFAKAQIQEVLQRatfdsnsqvGTIFHVmdsmespptyfrtnrFTNAFQEIVDAYGvaryqeanpavyaVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGliyneffsvpyhifggsayrcrdttcsdAYTAglvkyrepypfgvdpswrgsrselpflnSLKMKMSILLGVTQMNLGIILSYFdarffgssldirYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFlsptddlgenelfwgqRPLQILLLLLATVavpwmlfpkpfilrKLHTerfqgrtygilgtsemdlevepdsarqhhedfnfsEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQnkfyhgdgykfrpfsfalindeed
mgqfqaggflvssnghAVAEETELSENVYSMNDYADTASLLEQDIRAgpsnqsglrfisgiickSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALtsigfhltkwmNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPfgvdpswrgsRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED
MGQFQAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQIlllllATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED
*****************************************************GLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSE**************EDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALI*****
**QFQAGGF**********************************************RFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARER*********FMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLH*****************************HEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALI*****
MGQFQAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED
*GQFQAGGFLVSSNGH***E***LS***Y********A*******RAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERF***************************DFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALIN****
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MGQFQAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query684 2.2.26 [Sep-21-2011]
Q8RWZ7817 Vacuolar proton ATPase a1 yes no 0.986 0.826 0.836 0.0
Q9SJT7821 Vacuolar proton ATPase a2 no no 0.991 0.825 0.638 0.0
Q8W4S4821 Vacuolar proton ATPase a3 no no 0.994 0.828 0.645 0.0
Q54E04815 Vacuolar proton transloca yes no 0.934 0.784 0.456 1e-156
Q9HBG4840 V-type proton ATPase 116 yes no 0.954 0.777 0.438 1e-154
Q8AVM5831 V-type proton ATPase 116 N/A no 0.940 0.773 0.428 1e-152
Q920R6833 V-type proton ATPase 116 yes no 0.938 0.770 0.437 1e-152
Q9Z1G4839 V-type proton ATPase 116 no no 0.910 0.742 0.445 1e-152
P25286838 V-type proton ATPase 116 no no 0.910 0.743 0.441 1e-151
A1A5G6837 V-type proton ATPase 116 yes no 0.903 0.738 0.436 1e-151
>sp|Q8RWZ7|VHAA1_ARATH Vacuolar proton ATPase a1 OS=Arabidopsis thaliana GN=VHA-a1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1173 bits (3034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/678 (83%), Positives = 628/678 (92%), Gaps = 3/678 (0%)

Query: 5   QAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICK 64
           +A GFLVSSN HA+ EE EL E+ YS N + +TASLLEQ++  G SNQSGLRFISGII K
Sbjct: 140 KASGFLVSSNTHAIGEEIELHESTYSNNGFIETASLLEQEMNPGHSNQSGLRFISGIINK 199

Query: 65  SKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKIC 124
            K+L+FERMLFRATRGNMLFNQ  +DEEIMDP T+EMVEK +FVVFFSGEQARTKILKIC
Sbjct: 200 DKLLKFERMLFRATRGNMLFNQTTSDEEIMDPSTSEMVEKVVFVVFFSGEQARTKILKIC 259

Query: 125 EAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMV 184
           EAFGANCYPV ED TKQRQ+ REVLSRLS+LEATLDAG RHRN AL S+G+ LT W+  V
Sbjct: 260 EAFGANCYPVPEDTTKQRQLTREVLSRLSDLEATLDAGTRHRNNALNSVGYSLTNWITTV 319

Query: 185 RREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDS 244
           RREKAVYDTLNMLNFDVTKKCLVGEGWCP FAK QI EVLQRATFDS+SQVG IFHVM +
Sbjct: 320 RREKAVYDTLNMLNFDVTKKCLVGEGWCPTFAKTQIHEVLQRATFDSSSQVGVIFHVMQA 379

Query: 245 MESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLL 304
           +ESPPTYFRTN+ TNAFQEI+DAYGVARYQEANPAVY+V+T+PFLFAVMFGDWGHG+CLL
Sbjct: 380 VESPPTYFRTNKLTNAFQEIIDAYGVARYQEANPAVYSVVTYPFLFAVMFGDWGHGLCLL 439

Query: 305 LGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGS 364
           LGAL L+ARERKL  QKLGSFMEMLFGGRYV+LLM+LFSIYCGLIYNEFFSVP+HIFGGS
Sbjct: 440 LGALYLLARERKLSTQKLGSFMEMLFGGRYVILLMALFSIYCGLIYNEFFSVPFHIFGGS 499

Query: 365 AYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNL 424
           AY+CRDTTCSDAYT GL+KYR+PYPFGVDPSWRGSR+ELP+LNSLKMKMSILLG+ QMNL
Sbjct: 500 AYKCRDTTCSDAYTVGLIKYRDPYPFGVDPSWRGSRTELPYLNSLKMKMSILLGIAQMNL 559

Query: 425 GIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMF 484
           G+ILS+F+ARFFGSSLDIRYQF+PQ+IFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMF
Sbjct: 560 GLILSFFNARFFGSSLDIRYQFIPQMIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMF 619

Query: 485 LSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGT 544
           LSPT++LGENELFWGQRPLQI+LLLLA +AVPWMLFPKPF LRK+H ERFQGRTYG+L +
Sbjct: 620 LSPTEELGENELFWGQRPLQIVLLLLAFIAVPWMLFPKPFALRKIHMERFQGRTYGVLVS 679

Query: 545 SEMDLEVEPDSAR---QHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHS 601
           SE+DL+VEPDSAR    H E+FNFSEIFVHQ+IHSIEFVLG+VSNTASYLRLWALSLAHS
Sbjct: 680 SEVDLDVEPDSARGGGHHEEEFNFSEIFVHQLIHSIEFVLGSVSNTASYLRLWALSLAHS 739

Query: 602 ELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQN 661
           ELSTVFYEKVLLLAWGY+N++IRL+G+AVFAFATAFILLMMETLSAFLHALRLHWVEF  
Sbjct: 740 ELSTVFYEKVLLLAWGYENILIRLIGVAVFAFATAFILLMMETLSAFLHALRLHWVEFMG 799

Query: 662 KFYHGDGYKFRPFSFALI 679
           KF++GDGYKF+PFSFALI
Sbjct: 800 KFFNGDGYKFKPFSFALI 817
Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. Required during cell expansion.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SJT7|VHAA2_ARATH Vacuolar proton ATPase a2 OS=Arabidopsis thaliana GN=VHA-a2 PE=1 SV=1 Back     alignment and function description
>sp|Q8W4S4|VHAA3_ARATH Vacuolar proton ATPase a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1 Back     alignment and function description
>sp|Q54E04|VATM_DICDI Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2 Back     alignment and function description
>sp|Q9HBG4|VPP4_HUMAN V-type proton ATPase 116 kDa subunit a isoform 4 OS=Homo sapiens GN=ATP6V0A4 PE=1 SV=2 Back     alignment and function description
>sp|Q8AVM5|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1 Back     alignment and function description
>sp|Q920R6|VPP4_MOUSE V-type proton ATPase 116 kDa subunit a isoform 4 OS=Mus musculus GN=Atp6v0a4 PE=2 SV=1 Back     alignment and function description
>sp|Q9Z1G4|VPP1_MOUSE V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=3 Back     alignment and function description
>sp|P25286|VPP1_RAT V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1 Back     alignment and function description
>sp|A1A5G6|VPP1_XENTR V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus tropicalis GN=atp6v0a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query684
255582973 822 vacuolar proton atpase, putative [Ricinu 0.994 0.827 0.894 0.0
449463683 819 PREDICTED: vacuolar proton ATPase a1-lik 0.994 0.830 0.876 0.0
225435195 818 PREDICTED: vacuolar proton translocating 0.994 0.831 0.897 0.0
356558433 822 PREDICTED: V-type proton ATPase 116 kDa 0.994 0.827 0.845 0.0
356547204 853 PREDICTED: V-type proton ATPase 116 kDa 0.994 0.797 0.842 0.0
356542569 818 PREDICTED: V-type proton ATPase 116 kDa 0.994 0.831 0.848 0.0
356539094 818 PREDICTED: V-type proton ATPase 116 kDa 0.994 0.831 0.845 0.0
297822557 822 VHA-A1 [Arabidopsis lyrata subsp. lyrata 0.994 0.827 0.838 0.0
357453737 824 V-type proton ATPase 116 kDa subunit a i 0.992 0.824 0.841 0.0
30683925 817 V-type H+-transporting ATPase subunit I 0.986 0.826 0.836 0.0
>gi|255582973|ref|XP_002532256.1| vacuolar proton atpase, putative [Ricinus communis] gi|223528044|gb|EEF30122.1| vacuolar proton atpase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1293 bits (3345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/680 (89%), Positives = 653/680 (96%)

Query: 5   QAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICK 64
           +A  FLVSSN HAVAE+ EL+ENVYS NDY DTASLLEQ++R+ PSNQSGLRFISGII +
Sbjct: 143 KAVAFLVSSNSHAVAEDRELNENVYSNNDYGDTASLLEQELRSAPSNQSGLRFISGIIPR 202

Query: 65  SKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKIC 124
           SKVLRFERMLFRATRGNMLFNQAPADEEIMDPV+AEMVEKT+FVVFFSGEQARTKILKIC
Sbjct: 203 SKVLRFERMLFRATRGNMLFNQAPADEEIMDPVSAEMVEKTVFVVFFSGEQARTKILKIC 262

Query: 125 EAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMV 184
           EAFGANCYPV+ED+TKQRQI REVLSRLSELEATLDAG RHRNKAL SIGFHLTKWM +V
Sbjct: 263 EAFGANCYPVTEDITKQRQITREVLSRLSELEATLDAGNRHRNKALASIGFHLTKWMKVV 322

Query: 185 RREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDS 244
           RREKAVYDTLNMLNFDVTKKCLVGEGWCP+FAKAQIQE LQRATFDSNSQVG IFHV ++
Sbjct: 323 RREKAVYDTLNMLNFDVTKKCLVGEGWCPMFAKAQIQEALQRATFDSNSQVGIIFHVTEA 382

Query: 245 MESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLL 304
           +ESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVY VITFPFLFAVMFGDWGHGICLL
Sbjct: 383 LESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLL 442

Query: 305 LGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGS 364
           +GALVLIARE KLG+QKLGSFMEMLFGGRYVLLLM+ FSIYCGLIYNEFFSVP+HIFGGS
Sbjct: 443 IGALVLIARESKLGSQKLGSFMEMLFGGRYVLLLMAFFSIYCGLIYNEFFSVPFHIFGGS 502

Query: 365 AYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNL 424
           AYRCRDTTCSDA+T GL+KY++PYPFGVDPSWRGSRSELPFLNSLKMKMSILLGV QMN+
Sbjct: 503 AYRCRDTTCSDAHTVGLIKYQDPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVAQMNV 562

Query: 425 GIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMF 484
           GI+LSYF+ARFFGSSLDIRYQFVPQ+IFLN LFGYLSLLIIIKWC+GSQADLYHVMIYMF
Sbjct: 563 GILLSYFNARFFGSSLDIRYQFVPQIIFLNCLFGYLSLLIIIKWCSGSQADLYHVMIYMF 622

Query: 485 LSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGT 544
           LSPTDDLGEN+LFWGQRPLQI+LLLLA VAVPWMLFPKPFIL+KL+TERFQGRTYG+LGT
Sbjct: 623 LSPTDDLGENQLFWGQRPLQIILLLLAVVAVPWMLFPKPFILKKLNTERFQGRTYGLLGT 682

Query: 545 SEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELS 604
           SE+DL++EP SAR HH+DFNFSE+FVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELS
Sbjct: 683 SEVDLDMEPGSARSHHDDFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELS 742

Query: 605 TVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFY 664
           TVFYEKVLLLAWGYD L +RLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFY
Sbjct: 743 TVFYEKVLLLAWGYDILAVRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFY 802

Query: 665 HGDGYKFRPFSFALINDEED 684
           +GDGYKF+PFSF++I D+ED
Sbjct: 803 YGDGYKFKPFSFSMITDDED 822

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449463683|ref|XP_004149561.1| PREDICTED: vacuolar proton ATPase a1-like [Cucumis sativus] gi|449522438|ref|XP_004168233.1| PREDICTED: vacuolar proton ATPase a1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225435195|ref|XP_002282009.1| PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera] gi|297746196|emb|CBI16252.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558433|ref|XP_003547511.1| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356547204|ref|XP_003542006.1| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356542569|ref|XP_003539739.1| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356539094|ref|XP_003538035.1| PREDICTED: V-type proton ATPase 116 kDa subunit a isoform 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297822557|ref|XP_002879161.1| VHA-A1 [Arabidopsis lyrata subsp. lyrata] gi|297325000|gb|EFH55420.1| VHA-A1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357453737|ref|XP_003597149.1| V-type proton ATPase 116 kDa subunit a isoform [Medicago truncatula] gi|355486197|gb|AES67400.1| V-type proton ATPase 116 kDa subunit a isoform [Medicago truncatula] Back     alignment and taxonomy information
>gi|30683925|ref|NP_850122.1| V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] gi|75158780|sp|Q8RWZ7.1|VHAA1_ARATH RecName: Full=Vacuolar proton ATPase a1; AltName: Full=V-type proton ATPase 95 kDa subunit a isoform 1; Short=V-ATPase 95 kDa isoform a1; AltName: Full=Vacuolar proton pump subunit a1; AltName: Full=Vacuolar proton translocating ATPase 95 kDa subunit a isoform 1 gi|20259419|gb|AAM14030.1| putative vacuolar proton-ATPase subunit [Arabidopsis thaliana] gi|330253040|gb|AEC08134.1| V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query684
TAIR|locus:2056598817 VHA-A1 "vacuolar proton ATPase 0.986 0.826 0.830 4.29999999891e-315
TAIR|locus:2050085821 VHA-A2 "vacuolar proton ATPase 0.991 0.825 0.638 2.2e-240
TAIR|locus:2120217821 VHA-A3 "vacuolar proton ATPase 0.991 0.825 0.643 3.7e-238
DICTYBASE|DDB_G0291858817 vatM "vacuolar proton ATPase 1 0.934 0.782 0.447 2.8e-144
MGI|MGI:103286839 Atp6v0a1 "ATPase, H+ transport 0.654 0.533 0.418 3.1e-140
UNIPROTKB|F1S1D6832 LOC100523018 "Uncharacterized 0.631 0.519 0.427 3.9e-140
UNIPROTKB|F1PVU4839 ATP6V0A1 "Uncharacterized prot 0.665 0.542 0.414 1.7e-139
UNIPROTKB|F1MH43832 LOC785923 "Uncharacterized pro 0.631 0.519 0.425 2.1e-139
UNIPROTKB|B7Z641788 ATP6V0A1 "cDNA FLJ54439, highl 0.631 0.548 0.423 4.4e-139
UNIPROTKB|F1SNJ8840 ATP6V0A4 "Uncharacterized prot 0.647 0.527 0.426 2.4e-138
TAIR|locus:2056598 VHA-A1 "vacuolar proton ATPase A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3022 (1068.9 bits), Expect = 4.3e-315, P = 4.3e-315
 Identities = 563/678 (83%), Positives = 623/678 (91%)

Query:     5 QAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICK 64
             +A GFLVSSN HA+ EE EL E+ YS N + +TASLLEQ++  G SNQSGLRFISGII K
Sbjct:   140 KASGFLVSSNTHAIGEEIELHESTYSNNGFIETASLLEQEMNPGHSNQSGLRFISGIINK 199

Query:    65 SKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKIC 124
              K+L+FERMLFRATRGNMLFNQ  +DEEIMDP T+EMVEK +FVVFFSGEQARTKILKIC
Sbjct:   200 DKLLKFERMLFRATRGNMLFNQTTSDEEIMDPSTSEMVEKVVFVVFFSGEQARTKILKIC 259

Query:   125 EAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMV 184
             EAFGANCYPV ED TKQRQ+ REVLSRLS+LEATLDAG RHRN AL S+G+ LT W+  V
Sbjct:   260 EAFGANCYPVPEDTTKQRQLTREVLSRLSDLEATLDAGTRHRNNALNSVGYSLTNWITTV 319

Query:   185 RREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDS 244
             RREKAVYDTLNMLNFDVTKKCLVGEGWCP FAK QI EVLQRATFDS+SQVG IFHVM +
Sbjct:   320 RREKAVYDTLNMLNFDVTKKCLVGEGWCPTFAKTQIHEVLQRATFDSSSQVGVIFHVMQA 379

Query:   245 MESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLL 304
             +ESPPTYFRTN+ TNAFQEI+DAYGVARYQEANPAVY+V+T+PFLFAVMFGDWGHG+CLL
Sbjct:   380 VESPPTYFRTNKLTNAFQEIIDAYGVARYQEANPAVYSVVTYPFLFAVMFGDWGHGLCLL 439

Query:   305 LGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGS 364
             LGAL L+ARERKL  QKLGSFMEMLFGGRYV+LLM+LFSIYCGLIYNEFFSVP+HIFGGS
Sbjct:   440 LGALYLLARERKLSTQKLGSFMEMLFGGRYVILLMALFSIYCGLIYNEFFSVPFHIFGGS 499

Query:   365 AYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNL 424
             AY+CRDTTCSDAYT GL+KYR+PYPFGVDPSWRGSR+ELP+LNSLKMKMSILLG+ QMNL
Sbjct:   500 AYKCRDTTCSDAYTVGLIKYRDPYPFGVDPSWRGSRTELPYLNSLKMKMSILLGIAQMNL 559

Query:   425 GIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMF 484
             G+ILS+F+ARFFGSSLDIRYQF+PQ+IFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMF
Sbjct:   560 GLILSFFNARFFGSSLDIRYQFIPQMIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMF 619

Query:   485 LSPTDDLGENELFWGQRPLQIXXXXXATVAVPWMLFPKPFILRKLHTERFQGRTYGILGT 544
             LSPT++LGENELFWGQRPLQI     A +AVPWMLFPKPF LRK+H ERFQGRTYG+L +
Sbjct:   620 LSPTEELGENELFWGQRPLQIVLLLLAFIAVPWMLFPKPFALRKIHMERFQGRTYGVLVS 679

Query:   545 SEMDLEVEPDSAR---QHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHS 601
             SE+DL+VEPDSAR    H E+FNFSEIFVHQ+IHSIEFVLG+VSNTASYLRLWALSLAHS
Sbjct:   680 SEVDLDVEPDSARGGGHHEEEFNFSEIFVHQLIHSIEFVLGSVSNTASYLRLWALSLAHS 739

Query:   602 ELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQN 661
             ELSTVFYEKVLLLAWGY+N++IRL+G+AVFAFATAFILLMMETLSAFLHALRLHWVEF  
Sbjct:   740 ELSTVFYEKVLLLAWGYENILIRLIGVAVFAFATAFILLMMETLSAFLHALRLHWVEFMG 799

Query:   662 KFYHGDGYKFRPFSFALI 679
             KF++GDGYKF+PFSFALI
Sbjct:   800 KFFNGDGYKFKPFSFALI 817
GO:0005737 "cytoplasm" evidence=ISM
GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA
GO:0016887 "ATPase activity" evidence=ISS
GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0012510 "trans-Golgi network transport vesicle membrane" evidence=IDA
GO:0070070 "proton-transporting V-type ATPase complex assembly" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2050085 VHA-A2 "vacuolar proton ATPase A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120217 VHA-A3 "vacuolar proton ATPase A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291858 vatM "vacuolar proton ATPase 100-kDa subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:103286 Atp6v0a1 "ATPase, H+ transporting, lysosomal V0 subunit A1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1D6 LOC100523018 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVU4 ATP6V0A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MH43 LOC785923 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z641 ATP6V0A1 "cDNA FLJ54439, highly similar to Vacuolar proton translocating ATPase 116 kDa subunit a isoform 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SNJ8 ATP6V0A4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWZ7VHAA1_ARATHNo assigned EC number0.83620.98680.8261yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024467001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (835 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00029599001
SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (849 aa)
     •  0.899
GSVIVG00026188001
SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_37, whole genome shot [...] (222 aa)
     •  0.899
GSVIVG00024902001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)
     •  0.899
GSVIVG00022618001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (606 aa)
     •  0.899
GSVIVG00013522001
SubName- Full=Chromosome undetermined scaffold_495, whole genome shotgun sequence; (285 aa)
     •  0.899
VPP
SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (764 aa)
     •  0.899
GSVIVG00003295001
SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (767 aa)
     •  0.899
GSVIVG00000475001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (214 aa)
     •  0.899
GSVIVG00020891001
SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shot [...] (351 aa)
   •••• 0.651
GSVIVG00018828001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (261 aa)
    ••• 0.543

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query684
pfam01496707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 0.0
COG1269660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 8e-49
COG1269660 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su 9e-27
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 3e-20
PRK05771646 PRK05771, PRK05771, V-type ATP synthase subunit I; 1e-19
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information 
 Score =  539 bits (1390), Expect = 0.0
 Identities = 253/628 (40%), Positives = 352/628 (56%), Gaps = 69/628 (10%)

Query: 55  LRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGE 114
           L F++G+I + K+  FER L+RA RG     QA  +E + DP       KT+F++FF G+
Sbjct: 142 LGFVAGVINREKLEAFERELWRACRG--YIRQAEIEEPLEDPK------KTVFIIFFVGK 193

Query: 115 QARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIG 174
           +   K+ KI ++FG   Y V E   ++ ++I +V  R+ EL+  L+    H  K L  I 
Sbjct: 194 EDLDKVKKILDSFGFELYDVPETEGERSELISKVNKRIEELQRVLEQTESHLEKVLVKIA 253

Query: 175 FHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQ 234
             L  W   V +EKAVY+TLN+ N+D   K L+ EGW P     +++  L+ AT  S S 
Sbjct: 254 DELLAWDEQVSKEKAVYETLNLFNYDT--KTLIAEGWVPAKDLEKLKAALENATEGSGS- 310

Query: 235 VGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMF 294
           V +I + +++ E PPTY + N+FT  FQ IVDAYG+ +Y+E +P  + +ITFPF F +MF
Sbjct: 311 VPSIENDIETNEEPPTYLKNNKFTAPFQMIVDAYGIPKYREIDPTPFTIITFPFFFGMMF 370

Query: 295 GDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFF 354
           GD G+G+ + L AL+L+  E+KLG +K        F GRY+LLLM +FSIY G IYN+ F
Sbjct: 371 GDAGYGLLMFLIALLLVLLEKKLGKKK--------FKGRYILLLMGVFSIYTGFIYNDCF 422

Query: 355 SVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMS 414
               +IFG            +  T  L  +  PYPFG+DP W G  ++L FLNS KMK+S
Sbjct: 423 GKSLNIFGSGWLWPVMIKSGETLT--LAPHEGPYPFGIDPEWNGVENKLLFLNSYKMKLS 480

Query: 415 ILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQA 474
           I+LGV  M  G+ L +F+   F S +DI+  F+PQL +L  +FGYL +LII KW      
Sbjct: 481 IILGVIHMTFGLFLGFFNHVKFKSKIDIKDAFIPQLSWLIIIFGYLVILIIYKWLVDWAK 540

Query: 475 DLYHV------MIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRK 528
                      +I MFL P               +Q+ L++LA V VP +L  KP  L +
Sbjct: 541 TSKPAPSLLIGLINMFLFPG--------------VQVFLVVLALVCVPILLLLKPLFLMR 586

Query: 529 LHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTA 588
              +                              F F E+ +HQ+IH+IEF LG VS+TA
Sbjct: 587 EGKKGE----------------------------FEFGEVMIHQVIHTIEFCLGCVSHTA 618

Query: 589 SYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAF 648
           SYLRLWALSLAH++LS V    V+L+ +    ++  +V   +       I L+ME LSAF
Sbjct: 619 SYLRLWALSLAHAQLSAVLNTMVILIGFESIGVIALVVVFIIVFVLGHAINLIMEGLSAF 678

Query: 649 LHALRLHWVEFQNKFYHGDGYKFRPFSF 676
           LHALRLH+VEF +KFY G G KF PFSF
Sbjct: 679 LHALRLHYVEFFSKFYEGGGRKFEPFSF 706

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 684
KOG2189829 consensus Vacuolar H+-ATPase V0 sector, subunit a 100.0
PF01496759 V_ATPase_I: V-type ATPase 116kDa subunit family ; 100.0
PRK05771646 V-type ATP synthase subunit I; Validated 100.0
COG1269660 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [E 100.0
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-192  Score=1583.09  Aligned_cols=629  Identities=53%  Similarity=0.925  Sum_probs=577.0

Q ss_pred             CcceeEEEEEEeCCcHHHHHHHHHHHhcCceeeeecCCCcccccccccceeeeEEEEEEEeChhhHHHHHHHHhhcCCeE
Q 005673           52 QSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANC  131 (684)
Q Consensus        52 ~~~l~~v~G~I~~e~~~~fer~L~R~~rgn~~~~~~~i~~~~~d~~~~~~~~k~vfiv~~~g~~~~~kv~kI~~s~~~~~  131 (684)
                      +.+++|++|+|+|||.++|||+|||+||||+|+|++++|+++.||+||++++|+|||||++|+++++||+|||++|+|+.
T Consensus       170 ~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~~Geql~~kIkKIcd~f~a~~  249 (829)
T KOG2189|consen  170 GLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFFQGEQLKQKIKKICDGFGATL  249 (829)
T ss_pred             cccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEeecHHHHHHHHHHHhccCcEe
Confidence            34899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCceEEEEEe
Q 005673          132 YPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGW  211 (684)
Q Consensus       132 ~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~Ln~~~~~~t~~~~i~eGW  211 (684)
                      ||||+++.+|++++.+++.||+||+.++++|+++|.++|..+++++..|..+++|||+|||+||+|++|+|+||+++|||
T Consensus       250 yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIyhtLN~fn~Dvt~KCLIaE~W  329 (829)
T KOG2189|consen  250 YPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIYHTLNMFNFDVTQKCLIAEGW  329 (829)
T ss_pred             ecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhccCccccCceEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccHHHHHHHHHhhhccCCCceeeEEeecCCCCCCCcccccccchhHHHHHHHhhcCCCCCccCCchhHHHHHHHHHH
Q 005673          212 CPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFA  291 (684)
Q Consensus       212 vP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~~~pPT~~~nnkf~~~Fq~iv~~Yg~P~Y~EidPt~~~~itFpf~FG  291 (684)
                      ||++|++++|++|++.++.+|++|+++++.+++++.||||+||||||++||+|||+||+++|+|+||+|+|+|||||+||
T Consensus       330 ~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa~YrEvNPa~yTiITFPFLFA  409 (829)
T KOG2189|consen  330 CPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVASYREVNPAPYTIITFPFLFA  409 (829)
T ss_pred             cchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhcccccccccCCCceeEeehHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcchhHHHHHHHHHHHHHHHHhhccccch-hhHHHhhhhHHHHHHHHhHHHHHHHHHhcccccccccccCCccccccC
Q 005673          292 VMFGDWGHGICLLLGALVLIARERKLGNQKL-GSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRD  370 (684)
Q Consensus       292 ~MfGD~GhGlll~l~~l~l~~~~~~l~~~~~-~~~~~~~~~gryilllmGi~si~~G~lyg~~Fg~~~~~fg~s~~~~~~  370 (684)
                      +||||+|||++|+++|+||+++|||+.+++. +||++|+|+||||+++||+|||||||||||+||+|+++|| |+|.++.
T Consensus       410 VMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliYND~FSks~niFg-S~W~~~~  488 (829)
T KOG2189|consen  410 VMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIYNDFFSKSMNIFG-SSWSNPY  488 (829)
T ss_pred             HHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhhhhhccccccccc-CcccCcc
Confidence            9999999999999999999999999988874 6999999999999999999999999999999999999999 9999986


Q ss_pred             CCC----CCccc---ccccccCCCCCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchh
Q 005673          371 TTC----SDAYT---AGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIR  443 (684)
Q Consensus       371 ~~~----~~~~~---~~~~~~~~~ypfgldp~w~~~~n~l~f~ns~kMklSiilGv~hm~~G~~l~~~n~~~~~~~~~~~  443 (684)
                      +..    ++...   .+.....+|||||+||+||.++|+|+|.||+|||||||+|++||+||+++++.|+++||++.|++
T Consensus       489 ~~~~~~~~e~~~~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~fGv~lS~~N~~~Fk~~~~I~  568 (829)
T KOG2189|consen  489 NVTAVLCSEALLTPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMTFGVILSVFNHIYFKSKLDII  568 (829)
T ss_pred             ccchhccccccccCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhee
Confidence            532    22211   12122356999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHh-----cC-CCchHHHHHHHHhcCCCCCCCccccccCchHHHHHHHHHHHHhhhh
Q 005673          444 YQFVPQLIFLNSLFGYLSLLIIIKWC-----TG-SQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPW  517 (684)
Q Consensus       444 ~~~ip~~lfl~~~fgyl~~lii~kw~-----~~-~~p~ll~~li~m~l~p~~~~~~~~l~~gq~~vq~~ll~ia~~~vp~  517 (684)
                      ++||||++||.|+||||+++|+||||     ++ |+||+|+++||||++|+...+ .++|+||..+|.+++++|++||||
T Consensus       569 ~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~aPslLi~lInMFl~~~~~~~-~~lyp~Q~~vQ~~ll~~Al~cVPw  647 (829)
T KOG2189|consen  569 LVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCAPSLLIMLINMFLFPGTDAG-FQLYPGQKQVQLILLVLALVCVPW  647 (829)
T ss_pred             eeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCchHHHHHHHHHhCCCCCCc-cccCCchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999     44 699999999999999987543 289999999999999999999999


Q ss_pred             hccchhHHHhhhhhcc----ccCccccccCCCccccC-------CCCCccccCCCCCchhHHHHHHHHHHHHHhhhhhhh
Q 005673          518 MLFPKPFILRKLHTER----FQGRTYGILGTSEMDLE-------VEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSN  586 (684)
Q Consensus       518 ml~~kp~~l~~~~~~~----~~g~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~ge~~i~q~i~tiE~vlg~isn  586 (684)
                      ||++||++++++|+++    ..++.++.....++...       +..+.++++++++++||+||||+||||||||||+||
T Consensus       648 mLl~KPl~l~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fseI~iHQaIHTIEf~LgcVSh  727 (829)
T KOG2189|consen  648 MLLGKPLYLRRRHKNRLRERHQGQSAGRLDSTDGSVHGPTSDAEDGGGVGDGEEEEFEFSEIFIHQAIHTIEFVLGCVSH  727 (829)
T ss_pred             HHhcchHHHHHHhhhccccccccchhcccccccccccCCccccccCCCCCCCCcCccchhhHHhhhhhhhhhhhhccccc
Confidence            9999999999888764    22223332222111100       011112246667899999999999999999999999


Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhch---hHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhheecccCc
Q 005673          587 TASYLRLWALSLAHSELSTVFYEKVLLLAWGYD---NLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKF  663 (684)
Q Consensus       587 t~SYlRL~ALsLAha~La~v~~~m~~~~~~~~~---~~~~~~~g~~i~~~~~~~ill~me~LsaflHaLRLh~VEFfsKF  663 (684)
                      ||||||||||||||||||+|+|+|++.++++..   |.+++++.+.+|+++|++||++||||||||||||||||||||||
T Consensus       728 TASYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~MEGLSAfLHaLRLHWVEFqsKF  807 (829)
T KOG2189|consen  728 TASYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLMEGLSAFLHALRLHWVEFQSKF  807 (829)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999998887633   33556667789999999999999999999999999999999999


Q ss_pred             cccCCcccccccccccccc
Q 005673          664 YHGDGYKFRPFSFALINDE  682 (684)
Q Consensus       664 Y~G~G~~F~Pf~~~~~~~~  682 (684)
                      |+|+||+|+||+|+.+.++
T Consensus       808 y~G~Gy~F~PFsF~~~~~~  826 (829)
T KOG2189|consen  808 YEGTGYKFEPFSFKLILDE  826 (829)
T ss_pred             cCCCCcccccceeehhhhh
Confidence            9999999999999988764

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK05771 V-type ATP synthase subunit I; Validated Back     alignment and domain information
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query684
2nvj_A25 Nmr Structures Of Transmembrane Segment From Subuni 6e-04
>pdb|2NVJ|A Chain A, Nmr Structures Of Transmembrane Segment From Subunit A From The Yeast Proton V-Atpase Length = 25 Back     alignment and structure 
Iteration: 1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 578 EFVLGAVSNTASYLRLWALSLAHSE 602
           EF L  VS+TASYLRLWALSLAH++
Sbjct: 1   EFCLNCVSHTASYLRLWALSLAHAQ 25

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query684
3rrk_A357 V-type ATPase 116 kDa subunit; alpha beta fold, pr 4e-39
2nvj_A26 25MER peptide from vacuolar ATP synthase subunit A 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
2jtw_A26 Transmembrane helix 7 of yeast vATPase; peptide, m 9e-06
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} Length = 357 Back     alignment and structure
 Score =  147 bits (371), Expect = 4e-39
 Identities = 37/263 (14%), Positives = 66/263 (25%), Gaps = 26/263 (9%)

Query: 19  AEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLRFISGIICK-SKVLRFERMLFRA 77
            E   L E + ++  +   A  L   +  G      L  I  ++ K  ++    + L  A
Sbjct: 113 KERAALEEEIQTIELFGKAAEKL-AALAHGLDESPRLGVIPFLVAKPEELEAVRKALQEA 171

Query: 78  TRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANC--YPVS 135
                +    P             +E  +  +                  G     +P +
Sbjct: 172 LADRFVLEAEP-------------LENQLAALVVVKRSELEAARSSLSRLGLAELRFPGA 218

Query: 136 EDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLN 195
                  +    +  R       L        +     G  L       + E A Y  + 
Sbjct: 219 YGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVA 278

Query: 196 MLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDS---MESPPTYF 252
                  K      GW P  AK +++E L R       Q+   F  +D        P   
Sbjct: 279 D--MAAGKYGAALMGWVPQKAKGKVEEALGRLR----DQIVYTFEPVDEHHESHQVPVTL 332

Query: 253 RTNRFTNAFQEIVDAYGVARYQE 275
               +   F+ +        Y  
Sbjct: 333 ENPAWAKPFELLHGFLNTPAYGS 355
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic} Length = 26 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X Length = 26 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query684
3rrk_A357 V-type ATPase 116 kDa subunit; alpha beta fold, pr 100.0
2nvj_A26 25MER peptide from vacuolar ATP synthase subunit A 99.24
2jtw_A26 Transmembrane helix 7 of yeast vATPase; peptide, m 98.92
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber} Back     alignment and structure
Probab=100.00  E-value=9.1e-33  Score=298.58  Aligned_cols=208  Identities=13%  Similarity=0.135  Sum_probs=145.2

Q ss_pred             CCcceeEEEEEE-eCCcHHHHHHHHHHHhcCceeeeecCCCcccccccccceeeeEEEEEEEeChhhHHHHHHHHhhcCC
Q 005673           51 NQSGLRFISGII-CKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGA  129 (684)
Q Consensus        51 ~~~~l~~v~G~I-~~e~~~~fer~L~R~~rgn~~~~~~~i~~~~~d~~~~~~~~k~vfiv~~~g~~~~~kv~kI~~s~~~  129 (684)
                      ...++++++|+| ++++.++|++.|||+++|..+..           . ++...+++++|++ +++..+++++||+++||
T Consensus       144 ~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~-----------~-~~~~~~~~~vv~~-~~~~~~~v~~il~s~~f  210 (357)
T 3rrk_A          144 ESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLE-----------A-EPLENQLAALVVV-KRSELEAARSSLSRLGL  210 (357)
T ss_dssp             TCTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEE-----------E-EECSSSEEEEEEE-EGGGHHHHHHHHHTTTC
T ss_pred             ccceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEE-----------e-ecCCCcEEEEEEE-EHHHHHHHHHHHHHCCC
Confidence            456899999999 79999999999999999943221           1 2233456677776 46678899999999999


Q ss_pred             eEeeCCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCceEE
Q 005673          130 NCYPVSEDLT--KQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLV  207 (684)
Q Consensus       130 ~~~~~p~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~v~kekaiy~~Ln~~~~~~t~~~~i  207 (684)
                      ++|++|+..+  .+.+.++++++++++++++++++++++.++.......+..|...+++++++|+++|++  +.|++|++
T Consensus       211 ~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~~~~~~~  288 (357)
T 3rrk_A          211 AELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADM--AAGKYGAA  288 (357)
T ss_dssp             CBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCSEE
T ss_pred             eeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCcEEE
Confidence            9999998877  9999999999999999999999999999999998899999999999999999999965  68999999


Q ss_pred             EEEeeecccHHHHHHHHHhhhccCCCceeeEEeecCCC---CCCCcccccccchhHHHHHHHhhcCCCCCccC
Q 005673          208 GEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSM---ESPPTYFRTNRFTNAFQEIVDAYGVARYQEAN  277 (684)
Q Consensus       208 ~eGWvP~~~~~~i~~~L~~~~~~~~~~v~~~~~~~~~~---~~pPT~~~nnkf~~~Fq~iv~~Yg~P~Y~Eid  277 (684)
                      ++||||++++++++++|++ ++   ..+.+.+++++++   ++|||+++||||++|||.||+|||+|+|+|+|
T Consensus       289 ~~gWvp~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~Yg~p~Y~EiD  357 (357)
T 3rrk_A          289 LMGWVPQKAKGKVEEALGR-LR---DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGFLNTPAYGSHD  357 (357)
T ss_dssp             EEEEECTTTHHHHHHTCCS-SC---EEEEC-------------------------------------------
T ss_pred             EEEEeeHHHHHHHHHHHHh-cC---CceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHhcCCCCCCCCC
Confidence            9999999999999999986 32   3566777777766   58999999999999999999999999999998
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00