Citrus Sinensis ID: 005730

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680
MAAAATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPPPASDVQEPILPLPSTTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTEVSRWARWPWALSRWPVTGFLSRKGLWLCSTRSWIRIWHVANFLICPRRACNTIIMVLIVRCFNLHVPPSHQDYIYRWRLYFLLWFCCWDLGENKQASDKAKHCYVCFPIAWLNKLC
cccccccccccccccccccccccEEEEEEccccEEEEEEccccccccEEEEcccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEHHHHHHHcc
ccccccccccccccccccccEcEEEEEEEcccEEEEEEEEEEcccccEEEHHcEcccccccccccccccccccEEEEEEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHcccHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccEccccccccccccHHccccccccccccHHHcccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHccHHHHHHHHHHEEHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcHHHHHHHcc
maaaateaprssssgsadsYIGSLISltskseiryeGVLFNinteessiglrndrleqkgeekigpqvppsdkiyEYILFRGSDIKHCLLTItgdaisgprlsqtrdWTLRSVIRKDiqdlqvkssppvqtttsihndpaiiqSHYSQAAiasttlpsgtgslpdptsqtsqlglsrppfqgnpplyqpggslgawgsspmpttngaglampmywqgfygspnglqgqqqpllqpppglsmlpsmqqsmqypamnpslptgvsnlpasqlaehrpplmppistgtlnllspmlpaqssamisdsstnlipdkastqtlptaapstslplvpplnsgidktavapvsepksvpgpimpfqstvsesvstvgmsssilndgimpslvtpgqllqpglpavsssqssqaaqKDVEVVqlsssesaaapppasdvqepilplpstterkpygaptstqygyrggrgrgrgrgnelsrsatrftedfdfiamnekfnkdevwghlgksnkalddgdnyedeedvgsskhenkpvyvkddffdslscdalnrgshngrprfseqvrrdtevsrwarwpwalsrwpvtgflsrkglwlcstrsWIRIWHVANFLICPRRACNTIIMVLIVRCfnlhvppshqdyIYRWRLYFLLWFCCwdlgenkqasdkakhcyvcfpiAWLNKLC
maaaateaprssssgsadsyIGSLISLTSKSEIRYEGVLfninteessiGLRNdrleqkgeekigpqvppsdKIYEYILFRGSDIKHCLLTItgdaisgprlsqtrdWTLRSVIRkdiqdlqvkssppvqtttsiHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSesaaapppasdvqepilplpstterkpygaptstqygyrggrgrgrgrgnelsrsatrftedfdFIAMNEKFNKDEVWGHLGKsnkalddgdnYEDEEdvgsskhenkpvYVKDDFFDSLSCDALnrgshngrprfseqvrrdtevsrwarwpwalsrwpvtgflSRKGLWLCSTRSWIRIWHVANFLICPRRACNTIIMVLIVRCFNLHVPPSHQDYIYRWRLYFLLWFCCWDLGENKQASDKAKHCYVCFPIAWLNKLC
MAAAATEAPRssssgsadsyigsLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGlqgqqqpllqpppglsmlpsmqQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQstvsesvstvgmsssILNDGIMPSLVTPGQLLQPGLPavsssqssqaaqKDVEVVQLsssesaaapppasDVQEPILPLPSTTERKPYGAPTSTQygyrggrgrgrgrgNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTEVSRWARWPWALSRWPVTGFLSRKGLWLCSTRSWIRIWHVANFLICPRRACNTIIMVLIVRCFNLHVPPSHQDYIYRWRLYFLLWFCCWDLGENKQASDKAKHCYVCFPIAWLNKLC
*******************YIGSLISLTSKSEIRYEGVLFNINT****************************KIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQ***************************************************************************************AGLAMPMYWQGFYG******************************************************************************************************************************************************************************************************************************************************************TEDFDFIAMNEKFNKDEVWGHL****************************VYVKDDFFDSLSCD********************TEVSRWARWPWALSRWPVTGFLSRKGLWLCSTRSWIRIWHVANFLICPRRACNTIIMVLIVRCFNLHVPPSHQDYIYRWRLYFLLWFCCWDLGENKQASDKAKHCYVCFPIAWLNK**
***********************LISLTSKSEIRYEGVLFNINTEESSIGLRNDRL**************SDKIYEYILFRGSDIKHC*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FDFIAMNEK**************************************VYVKDDFFDSL********************RRDTEVSRWARWPWALSRWPVTGFLSRKGLWLCSTRSWIRIWHVANFLICPRRACNTIIMVLIVRCFNLHVPPSHQDYIYRWRLYFLLWFCCWDLGENKQ*SDKAKHCYVCFPIAWLNKLC
******************SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQ*********TTSIHNDPAIIQSHYSQAAIASTTLPSG**************GLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQP*************************************VQEPILPLPSTTERKPYGAPTSTQYGYRGG************RSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDG*************HENKPVYVKDDFFDSLSCDALNRGSHNGR**************RWARWPWALSRWPVTGFLSRKGLWLCSTRSWIRIWHVANFLICPRRACNTIIMVLIVRCFNLHVPPSHQDYIYRWRLYFLLWFCCWDLGENKQASDKAKHCYVCFPIAWLNKLC
*****************DSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGD******LS********************************HNDPAI***********************************RPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYG**************************************************************************************************************************************************************************************************************************************************************ATRFTEDFDFIAMNEKFNKDEVWGHLGK***************************YVKDDFFDSLS**************************RWARWPWALSRWPVTGFLSRKGLWLCSTRSWIRIWHVANFLICPRRACNTIIMVLIVRCFNLHVPPSHQDYIYRWRLYFLLWFCCWDLGENKQASDKAKHCYVCFPIAWLNKLC
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MAAAATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLPAQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSEPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPPPASDVQEPILPLPSTTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDTEVSRWARWPWALSRWPVTGFLSRKGLWLCSTRSWIRIWHVANFLICPRRACNTIIMVLIVRCFNLHVPPSHQDYIYRWRLYFLLWFCCWDLGENKQASDKAKHCYVCFPIAWLNKLC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query680 2.2.26 [Sep-21-2011]
Q9C658611 Protein decapping 5 OS=Ar yes no 0.761 0.847 0.472 1e-103
Q9FH77571 Decapping 5-like protein no no 0.233 0.278 0.331 1e-19
Q9HGL3426 Protein sum2 OS=Schizosac yes no 0.4 0.638 0.286 6e-14
Q8ND56463 Protein LSM14 homolog A O yes no 0.069 0.101 0.492 1e-12
Q5R4R4463 Protein LSM14 homolog A O yes no 0.069 0.101 0.492 1e-12
Q8K2F8462 Protein LSM14 homolog A O yes no 0.069 0.101 0.492 2e-12
A0A8M2471 Protein LSM14 homolog A-A N/A no 0.077 0.112 0.507 2e-12
Q8AVJ2471 Protein LSM14 homolog A-B N/A no 0.072 0.104 0.492 2e-12
Q3MHF8463 Protein LSM14 homolog A O yes no 0.069 0.101 0.492 2e-12
Q6NVR8469 Protein LSM14 homolog A O yes no 0.072 0.104 0.492 3e-12
>sp|Q9C658|DCP5_ARATH Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1 Back     alignment and function desciption
 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 288/609 (47%), Positives = 342/609 (56%), Gaps = 91/609 (14%)

Query: 1   MAAAATEAPRSSSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQK 59
           MAA  T    S SS +ADSY+GSLISLTSKSEIRYEG+L+NINT+ESSIGL+N R    +
Sbjct: 1   MAADNT---GSKSSSAADSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTE 57

Query: 60  GEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQ 119
           G +K GPQVPPSDK+YEYILFRG+DIK                                 
Sbjct: 58  GRKKDGPQVPPSDKVYEYILFRGTDIK--------------------------------- 84

Query: 120 DLQVKSSPPVQ-TTTSIHNDPAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQLGLSR 177
           DLQVK+SPPVQ   ++I+NDPAIIQSHY      S +LPS  +GSLPD +S   Q G   
Sbjct: 85  DLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLPSTASGSLPDISSHNGQPGQHG 144

Query: 178 PPFQGNPPLYQPGGSLGAWGSSPMPTTNGAGLAMPMYWQGFYG-SPNGL-QGQQQPLLQP 235
             FQ   PLYQPGG+LG+WG+SP P         PMYWQGFY   PNGL Q  QQ L++P
Sbjct: 145 MGFQNAMPLYQPGGNLGSWGASPQP---------PMYWQGFYTPPPNGLPQLHQQSLIRP 195

Query: 236 PPGLSMLPSMQQSMQYPAMNPSLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLP- 294
           P GL M  S+QQ +QYP  N   P   S+          P  + P ST +  L    LP 
Sbjct: 196 PHGLPMPNSLQQPLQYPNFNTPPPPTGSSSLQGSSLPEAPSSLFPFSTSSQMLAPSSLPF 255

Query: 295 ------------------AQSSAMISDSSTNLIPDKASTQTLPTAAPSTSLPLVPPLNSG 336
                             A S ++ S+ +  L+ +KA     PT    T+L     L+  
Sbjct: 256 PGLPPVTLSSSLQSTLQSAPSPSLASEMAPPLLSNKAPITAPPTLPQDTNL-----LSFS 310

Query: 337 IDKTAVAPVS-------EPKSVPGPIMPFQSTVSESVSTVGMSSSILNDGIMPSLVTPGQ 389
           +  T     S       +P  V GPI P Q+T   S    G+SSSI  D   P LVTPGQ
Sbjct: 311 LSTTRATEASTGLPLSNKPSVVTGPISPPQTTPLTSAPVAGVSSSISQDKPKPLLVTPGQ 370

Query: 390 LLQPGLPAVSSSQSSQAAQKDVEVVQLSSSES-AAAPPPASDVQEPILPLPSTTE--RKP 446
           LLQ G  AVS S  S  A KDVEVVQ+SSS     + P  S+ Q PILPLPS+    +KP
Sbjct: 371 LLQSGSSAVSLSPPSTNADKDVEVVQVSSSAGLEQSVPVTSEAQPPILPLPSSARPTQKP 430

Query: 447 YGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKFNKDEVWGHLGKSNKA 506
            G       GYR GRGRGRGRG   S    +FTEDFDF AMNEKFNKDEVWGHLGKS   
Sbjct: 431 NGHSFPNHNGYR-GRGRGRGRGAGRSHQVMKFTEDFDFTAMNEKFNKDEVWGHLGKSTTL 489

Query: 507 LDDGDNYEDEEDVGSS---KHENKPVYVKDDFFDSLSCDALNRGSHNGRPRFSEQVRRDT 563
             DGD  +D   V  +   K E KPVY KDDFFDSLS + ++R S N RPRFSEQ + DT
Sbjct: 490 --DGDEDDDSPTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDT 547

Query: 564 EV-SRWARW 571
           E    ++R+
Sbjct: 548 ETFGEFSRF 556
As a component of the decapping complex, involved in the degradation of mRNAs. Promotes P-body formation. Translational repressor.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FH77|DCP5L_ARATH Decapping 5-like protein OS=Arabidopsis thaliana GN=DCP5-L PE=2 SV=1 Back     alignment and function description
>sp|Q9HGL3|SUM2_SCHPO Protein sum2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sum2 PE=2 SV=1 Back     alignment and function description
>sp|Q8ND56|LS14A_HUMAN Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3 Back     alignment and function description
>sp|Q5R4R4|LS14A_PONAB Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1 Back     alignment and function description
>sp|Q8K2F8|LS14A_MOUSE Protein LSM14 homolog A OS=Mus musculus GN=Lsm14a PE=1 SV=1 Back     alignment and function description
>sp|A0A8M2|L14AA_XENLA Protein LSM14 homolog A-A OS=Xenopus laevis GN=lsm14a-a PE=1 SV=1 Back     alignment and function description
>sp|Q8AVJ2|L14AB_XENLA Protein LSM14 homolog A-B OS=Xenopus laevis GN=lsm14a-b PE=2 SV=1 Back     alignment and function description
>sp|Q3MHF8|LS14A_BOVIN Protein LSM14 homolog A OS=Bos taurus GN=LSM14A PE=2 SV=1 Back     alignment and function description
>sp|Q6NVR8|LS14A_XENTR Protein LSM14 homolog A OS=Xenopus tropicalis GN=lsm14a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query680
224079874579 predicted protein [Populus trichocarpa] 0.729 0.856 0.615 1e-156
224127400564 predicted protein [Populus trichocarpa] 0.720 0.868 0.601 1e-144
255570007576 conserved hypothetical protein [Ricinus 0.754 0.890 0.553 1e-142
225423849616 PREDICTED: uncharacterized protein LOC10 0.736 0.813 0.513 1e-122
147860146665 hypothetical protein VITISV_020005 [Viti 0.767 0.784 0.495 1e-120
356499741616 PREDICTED: uncharacterized protein LOC10 0.745 0.823 0.495 1e-120
224099297631 predicted protein [Populus trichocarpa] 0.761 0.820 0.492 1e-119
297737880564 unnamed protein product [Vitis vinifera] 0.705 0.851 0.516 1e-117
224111756632 predicted protein [Populus trichocarpa] 0.742 0.799 0.491 1e-116
449503510579 PREDICTED: protein decapping 5-like [Cuc 0.741 0.870 0.501 1e-112
>gi|224079874|ref|XP_002305956.1| predicted protein [Populus trichocarpa] gi|222848920|gb|EEE86467.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 341/554 (61%), Positives = 390/554 (70%), Gaps = 58/554 (10%)

Query: 20  YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYI 78
           Y+GSLISLTSKSEIRYEGVLFNINT+ES+IGLRN R    +G +K G QVPPSDKIYE+I
Sbjct: 31  YVGSLISLTSKSEIRYEGVLFNINTQESTIGLRNVRSFGTEGRKKDGLQVPPSDKIYEFI 90

Query: 79  LFRGSDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHND 138
           LFRG+DIK                                 DLQVKSSPPVQT T +HND
Sbjct: 91  LFRGTDIK---------------------------------DLQVKSSPPVQTATPVHND 117

Query: 139 PAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWG 197
           PAIIQS Y QAA AS  LPS G GSL DP+S  S  GL RP FQG+ P YQP  SL +WG
Sbjct: 118 PAIIQSQYPQAATASMNLPSSGNGSLTDPSSHASSNGLPRPTFQGSLPQYQPDASLESWG 177

Query: 198 SSPM-PTTNGAGLAMPMYWQGFYGSPNGLQGQQQPLLQPPPGLSMLPSMQQSMQYPAMNP 256
            S + PTTNG+GLAMPMYWQG+YG  NG+Q  QQ LL+PPPGLSM PSM QS+QYPAMN 
Sbjct: 178 PSHLLPTTNGSGLAMPMYWQGYYGPSNGVQAPQQALLRPPPGLSMPPSMMQSVQYPAMN- 236

Query: 257 SLPTGVSNLPASQLAEHRPPLMPPISTGTLNLLSPMLP-AQSSAMISDSSTNLIPDKAST 315
                 SN  AS L+E  PPL+PP ST TLNL +  +P ++SSAM+SD STNL PD+ ST
Sbjct: 237 -----ASNTSASPLSE-SPPLLPPFSTSTLNLQTSTIPSSRSSAMVSD-STNLTPDRVST 289

Query: 316 QTLPTAAPSTSLPLVPPLNSGIDKTAVAPVSE--PKSVPGPIMPFQSTVSESVSTVGMSS 373
           QTLP     ++LPL  PL + +DK A+A      PK+VP PIMPF+       S +  SS
Sbjct: 290 QTLP-----SNLPLASPLTTAVDKIAIASPGSYLPKTVPDPIMPFKRMSEPPSSIMRTSS 344

Query: 374 SILNDGIMPSLVTPGQLLQPGLPAVSSSQSSQAAQKDVEVVQLSSSESAAAPP--PASDV 431
           S+L +G  P LVTPGQL QPG P V S QSSQ AQKDVEVVQ+SS E +A PP   A++V
Sbjct: 345 SVLKEGKTP-LVTPGQLSQPGPPIVPSLQSSQIAQKDVEVVQVSSPELSALPPTTAAAEV 403

Query: 432 QEPILPLPSTTERKPYGAPTSTQYGYRGGRGRGRGRGNELSRSATRFTEDFDFIAMNEKF 491
           Q+PILPLPS  E K YGAP  T   +    GRGRGR NE+SRSATRF EDFDF AMNEKF
Sbjct: 404 QKPILPLPSQPEHKIYGAPMYTY--HTSRGGRGRGRENEISRSATRFEEDFDFTAMNEKF 461

Query: 492 NKDEVWGHLGKSNKALDDGDNYEDEEDVGSSKHENKPVYVKDDFFDSLSCDALNRGSHNG 551
           NKDEVWGHLGKS+KA  D D+  DE+DVGSSK E KPVYVKDDFFDS+SCDAL+ GS NG
Sbjct: 462 NKDEVWGHLGKSHKA-QDRDDLLDEDDVGSSKLETKPVYVKDDFFDSISCDALDGGSRNG 520

Query: 552 RPRFSEQVRRDTEV 565
           R RFS+Q RRDT+ 
Sbjct: 521 RARFSQQSRRDTDT 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224127400|ref|XP_002329268.1| predicted protein [Populus trichocarpa] gi|222870722|gb|EEF07853.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255570007|ref|XP_002525966.1| conserved hypothetical protein [Ricinus communis] gi|223534698|gb|EEF36390.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225423849|ref|XP_002281060.1| PREDICTED: uncharacterized protein LOC100242198 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147860146|emb|CAN78722.1| hypothetical protein VITISV_020005 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499741|ref|XP_003518695.1| PREDICTED: uncharacterized protein LOC100808030 [Glycine max] Back     alignment and taxonomy information
>gi|224099297|ref|XP_002311428.1| predicted protein [Populus trichocarpa] gi|222851248|gb|EEE88795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297737880|emb|CBI27081.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111756|ref|XP_002315966.1| predicted protein [Populus trichocarpa] gi|222865006|gb|EEF02137.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449503510|ref|XP_004162038.1| PREDICTED: protein decapping 5-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query680
TAIR|locus:2011410611 DCP5 "AT1G26110" [Arabidopsis 0.741 0.824 0.373 1.3e-70
TAIR|locus:2158470571 DCP5-L "decapping 5-like" [Ara 0.427 0.509 0.294 1.9e-32
UNIPROTKB|F1NEM2463 LSM14A "Uncharacterized protei 0.091 0.133 0.5 1.2e-15
UNIPROTKB|A0A8M2471 lsm14a-a "Protein LSM14 homolo 0.091 0.131 0.516 2e-14
UNIPROTKB|G4MRF0542 MGG_02405 "Uncharacterized pro 0.091 0.114 0.507 2.7e-14
ZFIN|ZDB-GENE-040426-2462448 lsm14ab "LSM14 homolog Ab (SCD 0.091 0.138 0.5 1.7e-13
UNIPROTKB|Q566L7382 lsm14b "Protein LSM14 homolog 0.091 0.162 0.483 3.1e-12
UNIPROTKB|Q68FI1422 lsm14b-a "Protein LSM14 homolo 0.091 0.146 0.483 3.5e-12
UNIPROTKB|F1MSA5463 LSM14A "Protein LSM14 homolog 0.214 0.315 0.339 4.2e-12
MGI|MGI:3040677385 Lsm14b "LSM14 homolog B (SCD6, 0.091 0.161 0.483 4.3e-12
TAIR|locus:2011410 DCP5 "AT1G26110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 211/565 (37%), Positives = 269/565 (47%)

Query:    24 LISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRG 82
             LISLTSKSEIRYEG+L+NINT+ESSIGL+N R    +G +K GPQVPPSDK+YEYILFRG
Sbjct:    21 LISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYEYILFRG 80

Query:    83 SDIKHCLLTITGDAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAII 142
             +DIK  L       +  P           S I  D   +Q     P+ T+ S+   P+  
Sbjct:    81 TDIKD-LQVKASPPVQPPA----------STINNDPAIIQSHYPSPMPTSGSL---PS-- 124

Query:   143 QSHYSQAAIASTTLPSGTGSLPDPTSQTSQLGLSRPPFQGNPPLYQPGGSLGAWGSSPMP 202
                            + +GSLPD +S   Q G     FQ   PLYQPGG+LG+WG+SP P
Sbjct:   125 ---------------TASGSLPDISSHNGQPGQHGMGFQNAMPLYQPGGNLGSWGASPQP 169

Query:   203 TTNGAGLAMP-------MYWQGFYGSPNGXXXXXXXXXXXXXXXXXXX---XXXQSMQYP 252
                  G   P       ++ Q     P+G                          S+Q  
Sbjct:   170 PMYWQGFYTPPPNGLPQLHQQSLIRPPHGLPMPNSLQQPLQYPNFNTPPPPTGSSSLQGS 229

Query:   253 AMNPSLPTGVSNLPASQ--LAEHRPPL--MPPISTGTLNLLSPMLPAQSSAMISDSSTNL 308
             ++ P  P+ +     S   LA    P   +PP++  + +L S +  A S ++ S+ +  L
Sbjct:   230 SL-PEAPSSLFPFSTSSQMLAPSSLPFPGLPPVTLSS-SLQSTLQSAPSPSLASEMAPPL 287

Query:   309 IPDKASTQTLPTAAPSTSLPLVPPLNS--GIDKTAVAPVS-EPKSVPGPIMPFQXXXXXX 365
             + +KA     PT    T+L L   L++    + +   P+S +P  V GPI P Q      
Sbjct:   288 LSNKAPITAPPTLPQDTNL-LSFSLSTTRATEASTGLPLSNKPSVVTGPISPPQTTPLTS 346

Query:   366 XXXXXXXXXILNDGIMPSLVTPGQLLQPGLPXXXXXXXXXXXXKDVEVVQLXXXXXXXXX 425
                      I  D   P LVTPGQLLQ G              KDVEVVQ+         
Sbjct:   347 APVAGVSSSISQDKPKPLLVTPGQLLQSGSSAVSLSPPSTNADKDVEVVQVSSSAGLEQS 406

Query:   426 X-XXXDVQEPILPLPSTTE--RKPYGAPTSTQXXXXXXXXXXXXXXNELSRSATRFTEDF 482
                  + Q PILPLPS+    +KP G                       S    +FTEDF
Sbjct:   407 VPVTSEAQPPILPLPSSARPTQKPNGHSFPNHNGYRGRGRGRGRGAGR-SHQVMKFTEDF 465

Query:   483 DFIAMNEKFNKDEVWGHLGKSNKALDDGDNYEDEEDVGSS---KHENKPVYVKDDFFDSL 539
             DF AMNEKFNKDEVWGHLGKS     DGD  +D   V  +   K E KPVY KDDFFDSL
Sbjct:   466 DFTAMNEKFNKDEVWGHLGKSTTL--DGDEDDDSPTVDEAELPKIEAKPVYNKDDFFDSL 523

Query:   540 SCDALNRGSHNGRPRFSEQVRRDTE 564
             S + ++R S N RPRFSEQ + DTE
Sbjct:   524 SSNTIDRESQNSRPRFSEQRKLDTE 548
GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0010606 "positive regulation of cytoplasmic mRNA processing body assembly" evidence=IMP
GO:0017148 "negative regulation of translation" evidence=IMP
GO:0031087 "deadenylation-independent decapping of nuclear-transcribed mRNA" evidence=IMP
GO:0033962 "cytoplasmic mRNA processing body assembly" evidence=IMP
GO:0042803 "protein homodimerization activity" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
TAIR|locus:2158470 DCP5-L "decapping 5-like" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NEM2 LSM14A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A0A8M2 lsm14a-a "Protein LSM14 homolog A-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|G4MRF0 MGG_02405 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2462 lsm14ab "LSM14 homolog Ab (SCD6, S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q566L7 lsm14b "Protein LSM14 homolog B" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q68FI1 lsm14b-a "Protein LSM14 homolog B-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1MSA5 LSM14A "Protein LSM14 homolog A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:3040677 Lsm14b "LSM14 homolog B (SCD6, S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00040865
hypothetical protein (579 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query680
cd0173674 cd01736, LSm14_N, Like-Sm protein 14, N-terminal d 5e-28
pfam1270181 pfam12701, LSM14, Scd6-like Sm domain 1e-26
pfam09532100 pfam09532, FDF, FDF domain 5e-21
pfam14438113 pfam14438, SM-ATX, SM domain found in Ataxin-2 5e-06
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 8e-04
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 0.002
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.003
TIGR01628562 TIGR01628, PABP-1234, polyadenylate binding protei 0.003
>gnl|CDD|212483 cd01736, LSm14_N, Like-Sm protein 14, N-terminal domain Back     alignment and domain information 
 Score =  106 bits (268), Expect = 5e-28
 Identities = 39/70 (55%), Positives = 51/70 (72%)

Query: 17 ADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYE 76
             YIGS ISL SKS+IRYEG+L+ I+TE+S+I L+N R         G  +PPSD++Y+
Sbjct: 1  GTPYIGSKISLISKSDIRYEGILYTIDTEDSTIALKNVRSFGTEGRPTGRPIPPSDEVYD 60

Query: 77 YILFRGSDIK 86
          YI+FRGSDIK
Sbjct: 61 YIVFRGSDIK 70

LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles. Length = 74
>gnl|CDD|221724 pfam12701, LSM14, Scd6-like Sm domain Back     alignment and domain information
>gnl|CDD|220282 pfam09532, FDF, FDF domain Back     alignment and domain information
>gnl|CDD|222754 pfam14438, SM-ATX, SM domain found in Ataxin-2 Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 680
KOG1073361 consensus Uncharacterized mRNA-associated protein 100.0
PF1270196 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC 100.0
cd0173674 LSm14_N LSm14 (also known as RAP55) belongs to a f 99.98
PF09532104 FDF: FDF domain; InterPro: IPR019050 This motif is 99.88
cd0060063 Sm_like The eukaryotic Sm and Sm-like (LSm) protei 97.46
PF1443877 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1. 97.42
PF0142367 LSM: LSM domain ; InterPro: IPR001163 This family 95.26
cd0173762 LSm16_N LSm16 belongs to a family of Sm-like prote 94.28
smart0065167 Sm snRNP Sm proteins. small nuclear ribonucleoprot 94.15
cd0172874 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins 93.92
cd0173168 archaeal_Sm1 The archaeal sm1 proteins: The Sm pro 93.56
cd0172268 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins 93.45
cd0171972 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins 93.28
cd0172667 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins 93.14
PRK0073772 small nuclear ribonucleoprotein; Provisional 93.11
cd0171779 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins 91.93
COG195879 LSM1 Small nuclear ribonucleoprotein (snRNP) homol 90.91
cd0172581 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins 90.1
cd0172376 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins 89.97
cd0172774 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins 89.15
cd0172170 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins 87.9
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 87.72
cd0172490 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins 87.66
cd0172981 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins 85.32
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 85.02
cd0173378 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins 83.53
cd0616875 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins 82.42
>KOG1073 consensus Uncharacterized mRNA-associated protein RAP55 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-38  Score=331.26  Aligned_cols=145  Identities=43%  Similarity=0.644  Sum_probs=115.9

Q ss_pred             CCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccccccccccc
Q 005730           16 SADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIKHCLLTITG   94 (680)
Q Consensus        16 ~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK~~~~~~~~   94 (680)
                      .+++||||+||||||.|||||||||+||++||||+|+||| ||||||+++++++|+.++|||||||||||||        
T Consensus         3 ~~t~yIGS~ISLISk~DIRYEGILy~in~qdSTlgLqnVRsfGTEgRk~~~pq~p~~~kVy~YIlFRGSDIK--------   74 (361)
T KOG1073|consen    3 LVTSYIGSFISLISKNDIRYEGILYTINLQDSTLGLQNVRSFGTEGRKTDGPQVPPDDKVYDYILFRGSDIK--------   74 (361)
T ss_pred             cccccccceeEEeecccceeeeEEEeccccccceehhheeecccccCCCCCCcCCCCccceeeEEecCcccc--------
Confidence            5799999999999999999999999999999999999999 9999999999999999999999999999999        


Q ss_pred             cCCCCCCcccccccchhhccccCCCCceeecCCCCCCCCCCCCChhhhhccCCCccccccCCCC-CCCCCCCCCCCCCCC
Q 005730           95 DAISGPRLSQTRDWTLRSVIRKDIQDLQVKSSPPVQTTTSIHNDPAIIQSHYSQAAIASTTLPS-GTGSLPDPTSQTSQL  173 (680)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~dl~v~~~~~~~~~~~~~~dpai~~~~~~~~~~~s~slps-~~g~~p~~ss~~~~~  173 (680)
                                               ||+|+++|..+..-..+.+|+|..         ..++++ .+++.+..+.+..+.
T Consensus        75 -------------------------DL~V~~~p~~~~~~~~p~~pp~p~---------~~~~~s~~s~~~~~~s~~~~~~  120 (361)
T KOG1073|consen   75 -------------------------DLIVQETPAGQIPCSLPVPPPMPP---------QSSIPSQQSGSDPKISFQFAQA  120 (361)
T ss_pred             -------------------------eeeeccCcccCccccccCCCCCCc---------ccccccccCCcccccccccccC
Confidence                                     999999876655566777777721         112222 344455555555544


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 005730          174 GLSRPPFQGNPPLYQPGGSLGAWGSSPMP  202 (680)
Q Consensus       174 g~p~p~fq~~~P~yqPg~~~gswG~sp~p  202 (680)
                      +-+.-.++.+++.++|....|+|.....+
T Consensus       121 ~~~~~~~P~~~~~~~~~~~~g~~~~~~~~  149 (361)
T KOG1073|consen  121 GNPVIGNPQGLITTNPVPAEGSIYGSFQP  149 (361)
T ss_pred             CCcccCCcCccccCCCCccccccccccCC
Confidence            44444455667788888888998887733

>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A Back     alignment and domain information
>cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>PF09532 FDF: FDF domain; InterPro: IPR019050 This motif is found in the C-terminal region of Sm-like proteins [] Back     alignment and domain information
>cd00600 Sm_like The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>PF14438 SM-ATX: Ataxin 2 SM domain; PDB: 1M5Q_1 Back     alignment and domain information
>PF01423 LSM: LSM domain ; InterPro: IPR001163 This family is found in Lsm (like-Sm) proteins and in bacterial Lsm-related Hfq proteins Back     alignment and domain information
>cd01737 LSm16_N LSm16 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>smart00651 Sm snRNP Sm proteins Back     alignment and domain information
>cd01728 LSm1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01731 archaeal_Sm1 The archaeal sm1 proteins: The Sm proteins are conserved in all three domains of life and are always associated with U-rich RNA sequences Back     alignment and domain information
>cd01722 Sm_F The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01719 Sm_G The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01726 LSm6 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>PRK00737 small nuclear ribonucleoprotein; Provisional Back     alignment and domain information
>cd01717 Sm_B The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] Back     alignment and domain information
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01723 LSm4 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01727 LSm8 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01721 Sm_D3 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd01729 LSm7 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd01733 LSm10 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query680
2fb7_A95 Nmr Solution Structure Of Protein From Zebra Fish D 5e-09
2vxe_A88 Solution Structure Of The Lsm Domain Of Drosophila 7e-09
>pdb|2FB7|A Chain A, Nmr Solution Structure Of Protein From Zebra Fish Dr.13312 Length = 95 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 25 ISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYILFRGSD 84
          ISL SK+EIRYEG+L+ I+TE S++ L   R     +      + P D+ +EYI+FRGSD
Sbjct: 22 ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSD 81
Query: 85 IK 86
          IK
Sbjct: 82 IK 83
>pdb|2VXE|A Chain A, Solution Structure Of The Lsm Domain Of Drosophila Melanogaster Tral (Trailer Hitch) Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query680
2fb7_A95 SM-like protein, LSM-14_N (RAP55); DR.13312, BC055 1e-23
2vxe_A88 CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA 1e-23
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 7e-07
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-05
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A Length = 95 Back     alignment and structure
 Score = 94.9 bits (236), Expect = 1e-23
 Identities = 34/75 (45%), Positives = 45/75 (60%)

Query: 12 SSSGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPS 71
                  YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      + P 
Sbjct: 9  EDPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPR 68

Query: 72 DKIYEYILFRGSDIK 86
          D+ +EYI+FRGSDIK
Sbjct: 69 DETFEYIIFRGSDIK 83
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster} Length = 88 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query680
2fb7_A95 SM-like protein, LSM-14_N (RAP55); DR.13312, BC055 100.0
2vxe_A88 CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA 100.0
2vc8_A84 Enhancer of mRNA-decapping protein 3; P-BODY compo 99.18
3pgw_B231 SM B; protein-RNA complex, U1 snRNA, SM fold, SM c 96.76
2rm4_A103 CG6311-PB, DM EDC3; enhancer of mRNA decapping, P- 96.45
4a53_A125 EDC3; RNA binding protein; NMR {Schizosaccharomyce 95.46
1y96_A86 Gemin6, SIP2, GEM-associated protein 6; SM fold, p 95.04
4a53_A125 EDC3; RNA binding protein; NMR {Schizosaccharomyce 94.92
1d3b_B91 Protein (small nuclear ribonucleoprotein associat 94.86
3s6n_G76 Small nuclear ribonucleoprotein G; SMN complex, SM 93.61
1d3b_A75 Protein (small nuclear ribonucleoprotein SM D3); s 93.52
1h64_175 SnRNP SM-like protein; SM fold, spliceosome, snRNP 93.3
4emk_A94 U6 snRNA-associated SM-like protein LSM5; SM fold, 93.11
1i4k_A77 Putative snRNP SM-like protein; core snRNP domain, 93.11
1th7_A81 SnRNP-2, small nuclear riboprotein protein; archae 92.48
1i8f_A81 Putative snRNP SM-like protein; beta barrel-like S 92.37
2fwk_A121 U6 snRNA-associated SM-like protein LSM5; structur 92.26
1b34_A119 Protein (small nuclear ribonucleoprotein SM D1); s 92.21
1mgq_A83 SM-like protein; LSM, RNA-binding, archea, RNA bin 91.7
4emh_A105 Probable U6 snRNA-associated SM-like protein LSM4; 91.63
4emk_B75 U6 snRNA-associated SM-like protein LSM6; SM fold, 91.45
4emk_C113 U6 snRNA-associated SM-like protein LSM7; SM fold, 90.86
1ljo_A77 Archaeal SM-like protein AF-SM2; snRNP, core snRNP 90.81
1m5q_A130 SMAP3, small nuclear ribonucleoprotein homolog, SM 90.75
2y9a_D126 Small nuclear ribonucleoprotein SM D3; splicing-RN 90.56
3bw1_A96 SMX4 protein, U6 snRNA-associated SM-like protein 90.38
2wax_B44 Enhancer of mRNA-decapping protein 3; DEAD-box pro 89.62
1n9r_A93 SMF, small nuclear ribonucleoprotein F, snRNP-F, S 89.61
3s6n_F86 Small nuclear ribonucleoprotein F; SMN complex, SM 84.93
4emg_A93 Probable U6 snRNA-associated SM-like protein LSM3; 83.79
3d3j_A 306 Enhancer of mRNA-decapping protein 3; HEDC3, phosp 83.53
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A Back     alignment and structure
Probab=100.00  E-value=2.1e-35  Score=259.42  Aligned_cols=72  Identities=47%  Similarity=0.812  Sum_probs=65.4

Q ss_pred             CCCCcccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730           14 SGSADSYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (680)
Q Consensus        14 ~~~~~~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK   86 (680)
                      ++++.+|||++||||||+|||||||||+||++++||+|+||| ||||||++++ +|||+++|||||+|||+|||
T Consensus        11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~-~ipp~~~vyeyIvFrGsDIK   83 (95)
T 2fb7_A           11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR-PIAPRDETFEYIIFRGSDIK   83 (95)
T ss_dssp             -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSS-CCCSCCCCSSCEEECSTTEE
T ss_pred             CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCC-ccCCCCcceeEEEEcCCCcc
Confidence            357899999999999999999999999999999999999999 9999999874 59999999999999999999
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster} Back     alignment and structure
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens} Back     alignment and structure
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Back     alignment and structure
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster} Back     alignment and structure
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A Back     alignment and structure
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens} Back     alignment and structure
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A Back     alignment and structure
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A Back     alignment and structure
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G Back     alignment and structure
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 Back     alignment and structure
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A* Back     alignment and structure
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A Back     alignment and structure
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A* Back     alignment and structure
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1 Back     alignment and structure
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A* Back     alignment and structure
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A Back     alignment and structure
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A Back     alignment and structure
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A Back     alignment and structure
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe} Back     alignment and structure
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B Back     alignment and structure
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C Back     alignment and structure
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1 Back     alignment and structure
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1 Back     alignment and structure
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D Back     alignment and structure
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2wax_B Enhancer of mRNA-decapping protein 3; DEAD-box protein, nucleotide-binding, RCK, miRNA, P-bodies, helicase, RNA-binding, proto-oncogene; HET: CXS; 2.30A {Homo sapiens} PDB: 2way_B Back     alignment and structure
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A Back     alignment and structure
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F Back     alignment and structure
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe} Back     alignment and structure
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 680
d2vxfa180 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebraf 3e-24
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]} Length = 80 Back     information, alignment and structure

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: LSM14 N-terminal domain-like
domain: LSM14 homolog A (Lsm14a)
species: Zebrafish (Danio rerio) [TaxId: 7955]

 Score = 94.7 bits (236), Expect = 3e-24
 Identities = 34/67 (50%), Positives = 45/67 (67%)

Query: 20 YIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDRLEQKGEEKIGPQVPPSDKIYEYIL 79
          YIGS ISL SK+EIRYEG+L+ I+TE S++ L   R     +      + P D+ +EYI+
Sbjct: 2  YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYII 61

Query: 80 FRGSDIK 86
          FRGSDIK
Sbjct: 62 FRGSDIK 68

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query680
d2vxfa180 LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) 100.0
d1d3bb_81 B core SNRNP protein {Human (Homo sapiens) [TaxId: 96.85
d1th7a176 Archaeal homoheptameric Sm protein {Sulfolobus sol 94.75
d1i8fa_71 Archaeal homoheptameric Sm protein {Archaeon Pyrob 94.49
d1h641_71 Archaeal homoheptameric Sm protein {Archaeon Pyroc 94.23
d1mgqa_74 Archaeal homoheptameric Sm protein {Archaeon Metha 93.62
d1d3ba_72 D3 core SNRNP protein {Human (Homo sapiens) [TaxId 93.57
d1i4k1_72 Archaeal homoheptameric Sm protein {Archaeon Archa 92.96
d2fwka192 U6 snRNA-associated sm-like protein LSM5 {Cryptosp 92.82
d1b34a_80 D1 core SNRNP protein {Human (Homo sapiens) [TaxId 92.27
d1ljoa_75 Archaeal homoheptameric Sm protein {Archaeon Archa 92.18
d1m5q1_127 Sm-Like archaeal protein Smap3 {Archaeon Pyrobacul 91.3
d1n9ra_68 Small nuclear ribonucleoprotein F, Smf {Baker's ye 80.21
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: LSM14 N-terminal domain-like
domain: LSM14 homolog A (Lsm14a)
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=4.3e-35  Score=248.64  Aligned_cols=67  Identities=51%  Similarity=0.864  Sum_probs=65.0

Q ss_pred             ccccceeEEEecCCceeEEEeeeecCCCCeeeecccc-cccCCCCCCCCCCCCCCcceeEEEEEcCccc
Q 005730           19 SYIGSLISLTSKSEIRYEGVLFNINTEESSIGLRNDR-LEQKGEEKIGPQVPPSDKIYEYILFRGSDIK   86 (680)
Q Consensus        19 ~~IGs~ISLISksdIRYeGiL~~Id~e~sTI~L~nVR-fGTEgR~~~~~~IPps~~vyeyIvFrgsDIK   86 (680)
                      +|||++||||||+||||||+||+||++++||+|+||| ||||||++++ +|||+++|||||+|||+|||
T Consensus         1 pyIGs~IsLISk~dIRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~~-~ipp~~~vy~~IvFrgsDIK   68 (80)
T d2vxfa1           1 PYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR-PIAPRDETFEYIIFRGSDIK   68 (80)
T ss_dssp             CSTTSEEEEEETTSCEEEEEEEEEETTTTEEEEEEEEECCSTTSCCSS-CCCCCCCCEEEEEEETTTEE
T ss_pred             CccCCEEEEEEcCCcEEEEEEEeeccccCEEEeeeeeEeecCCCCCCC-ccCCCCcceeEEEEcCcCcc
Confidence            6999999999999999999999999999999999999 9999998774 69999999999999999999
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]} Back     information, alignment and structure
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]} Back     information, alignment and structure
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure