Citrus Sinensis ID: 005743

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
Protein Sequence
MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWGLKGFTVDKKTKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKRVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccHHHHHHcHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEccccccccccccccccccccccccccccccccEccHHcccccccccccccccccHcHcccccccccccHHHHHHHHHHcccccccHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccHHHcccccccHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccEcHHHHHHHHHHHHHHHHHccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MRDENASENRAKTlkfadqnqppksqntktnssinpskprsswglkgftvdkktksqttatskklplttnssdvtnqknsiVASHSRVKRSLIgdlacsmnpaqvhpnsyqthrrqssgsrdLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKndnknainmgssssqnLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDElqnscsttnsekasspnTIEEIVENvgslpnqnnkvleysggrrLSFIKKFkkwpiaseemsnlecqdnvLDKTWVQleegrsprrrhsisgsncraeelmpnkrrqsdgfmctketeheeeslssqkydfdqrpqfsanrlemnrnasvLEVEKRvlrvpnppprpscgisggtkeerqaqipqppplprppppppapkfsgksttgvvqrAPQVVEFYHSLmkrdsrkdssnggvceapnvanVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVlkhfdwpekkADTLREAAFGYRDLKKLESevsyykddprvpcdLALKKMVSLSEK
Flexible Loop (DISEMBL)
mrdenasenraktlkfadqnqppksqntktnssinpskprsswglkgftvdkktksqttatskklplttnssdvtnqknsivashsrVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQaelsewkrnpkvlelereleakkiendeivrrvgmledektslSEQLAALSVILErkndnknainmgssssqnleMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNScsttnsekasspnTIEEIVenvgslpnqnNKVLeysggrrlsFIKKFKKWPIASeemsnlecqdnvLDKTWVQleegrsprrrhsisgsncraeelmpnkrrqsdgFMCTKETEHeeeslssqkydfDQRPQFSANRLEMNRNASVLEVEkrvlrvpnppprpsCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMkrdsrkdssnggvceapnvanVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAvlkhfdwpekkadtlreaafgyrdlkklesevsyykddprvpcDLALKKMVSLSEK
Low Complexity Region (SEG)
MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWGLKGFTVDkktksqttatskkLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGsrdlfleldslrsllqesKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKrvlrvpnppprpSCGISGGTKEERQAQIpqppplprppppppapKFSGKSTTGVVQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************************************************************************************************************************IISKIKAEALVLRHT*********GLQMSRLNEVEELAYLRWVNSCLRD***********************************KVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQ******************************************************************************************************************************************VVEFY*********************************IENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLAL*********
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VEF************************************NRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLS**
Disordered Region (DISEMBL)
***********KTLKFA**********************RSSWGLKGFTVD***********KKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQV**************SRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDEL***************NTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEE***********GSNCRAEELMPNKRRQSDGFMC***************YDFDQRPQFSANRLEMNRNASVLEVEKRVLRVPNPPPRPSC****************PPPLPRPPPPPP************VQRAPQVVEFYHSLMK**********GVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK
Disordered Region (DISPRO)
*********RAKTLKFADQ***********************************************************************SLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSC*************************************RRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEE****************************DGFMCTKETEHEEESLSSQK*************************************************************PRPPPPPP*************QRAPQ*********K**********************SSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWGLKGFTVDKKTKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLExxxxxxxxxxxxxxxxxxxxxxxxxxxxPKxxxxxxxxxxxxxxxxxxxxxxxxxxxxKTSLSEQLAALSVILERKNDNKNAINMGSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKRVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	679	2.2.26 [Sep-21-2011]
Q9LI74	1004	Protein CHUP1, chloroplas	no	no	0.234	0.158	0.606	1e-50
Q1PEB4	724	Uncharacterized protein A	no	no	0.217	0.204	0.273	0.0007

>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1

 Score =  201 bits (512), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 122/160 (76%), Gaps = 1/160 (0%)

Query: 521 VQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAP-NVANVRSSMIGEIENRSSHLLAIKADV 579
           V RAP++VEFY SLMKR+S+K+ +   +     N +  R++MIGEIENRS+ LLA+KADV
Sbjct: 718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777

Query: 580 ATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLR 639
            TQG+FV SL  EV  + + +IED++AFV WLD+EL FLVDERAVLKHFDWPE KAD LR
Sbjct: 778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALR 837

Query: 640 EAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           EAAF Y+DL KLE +V+ + DDP + C+ ALKKM  L EK
Sbjct: 838 EAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEK 877

Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 13/161 (8%)

Query: 515 KSTTGVVQRAPQVVEFYHSLM-KRDSR------KDSSNG--GVCEAPNVANVRSSM---I 562
           K  T  ++R+ Q+   Y +L  K + R      K +S G   V E   V   RS M   +
Sbjct: 428 KKATSKLRRSAQIANLYWALKGKLEGRGVEGKTKKASKGQNSVAEKSPVKVARSGMADAL 487

Query: 563 GEIENRSSHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDER 622
            E+  RSS+   I+ DV    + +  L   +++   +++++++ F   ++  L  L DE 
Sbjct: 488 AEMTKRSSYFQQIEEDVQKYAKSIEELKSSIHSFQTKDMKELLEFHSKVESILEKLTDET 547

Query: 623 AVLKHFD-WPEKKADTLREAAFGYRDLKKLESEVSYYKDDP 662
            VL  F+ +PEKK + +R A   Y+ L  +  E+  +K +P
Sbjct: 548 QVLARFEGFPEKKLEVIRTAGALYKKLDGILVELKNWKIEP 588

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	679
224115606	794	predicted protein [Populus trichocarpa]	0.991	0.847	0.720	0.0
255586265	791	actin binding protein, putative [Ricinus	0.983	0.844	0.722	0.0
225444169	801	PREDICTED: protein CHUP1, chloroplastic-	0.979	0.830	0.699	0.0
297740902	781	unnamed protein product [Vitis vinifera]	0.949	0.825	0.677	0.0
449433527	787	PREDICTED: protein CHUP1, chloroplastic-	0.980	0.846	0.666	0.0
449490629	787	PREDICTED: LOW QUALITY PROTEIN: protein	0.980	0.846	0.666	0.0
356564055	780	PREDICTED: protein CHUP1, chloroplastic-	0.963	0.838	0.613	0.0
356552350	777	PREDICTED: protein CHUP1, chloroplastic-	0.961	0.840	0.606	0.0
357437461	754	Chloroplast unusual positioning 1A [Medi	0.913	0.822	0.597	0.0
242080449	797	hypothetical protein SORBIDRAFT_07g00245	0.948	0.808	0.536	0.0

>gi|224115606|ref|XP_002317077.1| predicted protein [Populus trichocarpa] gi|222860142|gb|EEE97689.1| predicted protein [Populus trichocarpa]

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/687 (72%), Positives = 566/687 (82%), Gaps = 14/687 (2%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWG---LKGFTVDKKTKSQ 57
           MR+EN  E ++K +KFADQNQ PK QN K N++ N SK +SSWG   +KGFT DKKTK+Q
Sbjct: 1   MREENTVETKSKAVKFADQNQAPKPQNIKGNNNNNGSKIKSSWGSHIVKGFTADKKTKTQ 60

Query: 58  T-TATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQT-HRR 115
           T T T+K+LPL   SS+ T QKNS+V SHSRVKRSLIGDL CS+  +QVHP +YQ  HRR
Sbjct: 61  TITVTAKRLPLA--SSETTKQKNSLVNSHSRVKRSLIGDLTCSVTGSQVHPKAYQANHRR 118

Query: 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIV 175
           QSSGSRDLF+ELD LRSLLQESKEREFKLQAELSE KRN +V++LERELEA++ E DE+ 
Sbjct: 119 QSSGSRDLFVELDQLRSLLQESKEREFKLQAELSEVKRNGRVVDLERELEARRNEVDELC 178

Query: 176 RRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQM 235
           +R+G+LE EK+ L EQ+  L +I E++++         SS  NLEMEVVELRRLNKELQM
Sbjct: 179 KRIGVLESEKSGLCEQVNELCLISEKRSEEVLKREGNESSVGNLEMEVVELRRLNKELQM 238

Query: 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV 295
           +KRNLACK SS+E+QL S A++SESD+++KIKAE  +LRHTNEDL KQVEGLQMSRLNEV
Sbjct: 239 DKRNLACKLSSLESQLASFARSSESDVVAKIKAETSLLRHTNEDLCKQVEGLQMSRLNEV 298

Query: 296 EELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRR 355
           EELAYLRWVNSCLRDEL+NSCST NS+KASSP ++E   E+ GS+  Q+N  LE +   R
Sbjct: 299 EELAYLRWVNSCLRDELRNSCSTMNSDKASSPKSVERSNESAGSISCQSNDYLESNSKMR 358

Query: 356 LSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNK 415
           L FIKK KKWPI  E++ NLECQ    DK WV  E+GRSPRRRHSISGS    E+L PN+
Sbjct: 359 LDFIKKLKKWPITDEDLPNLECQ----DKNWVHSEDGRSPRRRHSISGSKFCLEDLAPNR 414

Query: 416 RRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLRVPN 473
           RRQSD FMC KE E+E E +SS+KY+ D  QRPQ  AN  E N+    L+VEKR LRVPN
Sbjct: 415 RRQSDVFMCIKEMENEVELVSSEKYELDIMQRPQILANCQETNKIVGPLDVEKRTLRVPN 474

Query: 474 PPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTT-GVVQRAPQVVEFYH 532
           PPPRPSC +S G KEE QAQ+P PPP P PPPPPP PKFS +STT GVVQRAPQVVEFYH
Sbjct: 475 PPPRPSCSVSTGPKEEVQAQVPLPPPPPPPPPPPPPPKFSVRSTTAGVVQRAPQVVEFYH 534

Query: 533 SLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLIRE 592
           SLMKRDSRK+SSNGG+CEA +VANVRS+MIGEIENRSSHLLAIKAD+ TQGEFVNSLIRE
Sbjct: 535 SLMKRDSRKESSNGGICEASDVANVRSNMIGEIENRSSHLLAIKADIETQGEFVNSLIRE 594

Query: 593 VNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKKLE 652
           VNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFG+ DLKKLE
Sbjct: 595 VNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGFSDLKKLE 654

Query: 653 SEVSYYKDDPRVPCDLALKKMVSLSEK 679
           SEVSYYKDDPRVPCDLALKKMV+LSEK
Sbjct: 655 SEVSYYKDDPRVPCDLALKKMVALSEK 681

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586265|ref|XP_002533785.1| actin binding protein, putative [Ricinus communis] gi|223526286|gb|EEF28598.1| actin binding protein, putative [Ricinus communis]

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/691 (72%), Positives = 562/691 (81%), Gaps = 23/691 (3%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWG---LKGFTVDKKTKS- 56
           MR+EN  E ++K  KFADQNQ PK+QNTK NS+ N SK RSSWG   +KGFT DKKTKS 
Sbjct: 1   MREENPFETKSKASKFADQNQAPKAQNTKGNSN-NASKLRSSWGSHIVKGFTADKKTKSS 59

Query: 57  QTTA--TSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQT-- 112
            TTA  TSKKLPL    S  TNQKN +V+SHSRVKRSLIGDL+CS+   QVHP++YQ   
Sbjct: 60  HTTAVVTSKKLPLPNTES--TNQKNPLVSSHSRVKRSLIGDLSCSVTAIQVHPHAYQNQT 117

Query: 113 -HRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIEN 171
            HRRQSSGSRDLFLELD LRSLLQESKEREFKLQAE+SE KRN ++LELEREL  KK E 
Sbjct: 118 NHRRQSSGSRDLFLELDHLRSLLQESKEREFKLQAEVSELKRNGRLLELERELAVKKNEV 177

Query: 172 DEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNK 231
           DE+++R+G+LE EKT L EQ+A + +  E+K++         +S  N+EMEVVELRRLNK
Sbjct: 178 DELLQRIGILESEKTVLCEQVAEMCLNSEKKHEEVLKREGNETSMGNMEMEVVELRRLNK 237

Query: 232 ELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR 291
           ELQMEKRNL+C+ SSME QL S+AKASESDI++KIKAEA  LR TNEDL KQVEGLQMSR
Sbjct: 238 ELQMEKRNLSCRLSSMETQLASVAKASESDILAKIKAEASSLRLTNEDLCKQVEGLQMSR 297

Query: 292 LNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYS 351
           LNEVEELAYLRWVNSCLRDEL+NSCS + S+KAS  N+ E   ++V S  +  N+ LEYS
Sbjct: 298 LNEVEELAYLRWVNSCLRDELRNSCSIS-SDKASGLNSAERSNDSVNSFSS--NEYLEYS 354

Query: 352 GGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEEL 411
             +RL+ IKK KKWPI +E++ NLEC D    K WV  EE RSPRRRHSISGS    EEL
Sbjct: 355 SAKRLNLIKKLKKWPITNEDLPNLECPD----KNWVHSEELRSPRRRHSISGSKFSIEEL 410

Query: 412 MPNKRRQSDGFMCTKETEHEEESLSSQKYDF--DQRPQFSANRLEMNRNASVLEVEKRVL 469
           + +KRRQSDGFMC KE E E E LSSQKYDF  DQRPQ   N +E N+  S L+VEKRVL
Sbjct: 411 VSSKRRQSDGFMCIKEVEKETEPLSSQKYDFEMDQRPQMFVNCIENNKIVSSLDVEKRVL 470

Query: 470 RVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTT-GVVQRAPQVV 528
           RVPNPPPRPSC +   TKEE   Q+  PPP P PPPPPP PKFS +S++ GVVQRAPQVV
Sbjct: 471 RVPNPPPRPSCSMPSETKEECSVQVAPPPP-PPPPPPPPPPKFSMRSSSAGVVQRAPQVV 529

Query: 529 EFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNS 588
           EFYHSLMKRDSRK+SSNGGVCEA +VANVRSSMIGEIENRSSHLLAIKADV TQGEFVNS
Sbjct: 530 EFYHSLMKRDSRKESSNGGVCEASDVANVRSSMIGEIENRSSHLLAIKADVETQGEFVNS 589

Query: 589 LIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDL 648
           LIREVNNAV+QNIEDVVAFVKWLDDELGFLVDERAVLKHF+WPEKKADTLREAAFGYRDL
Sbjct: 590 LIREVNNAVFQNIEDVVAFVKWLDDELGFLVDERAVLKHFEWPEKKADTLREAAFGYRDL 649

Query: 649 KKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           KKLESEVSYYKDDPR+PCD+ALKKMV+LSEK
Sbjct: 650 KKLESEVSYYKDDPRMPCDVALKKMVTLSEK 680

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444169|ref|XP_002268607.1| PREDICTED: protein CHUP1, chloroplastic-like [Vitis vinifera]

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/689 (69%), Positives = 560/689 (81%), Gaps = 24/689 (3%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRS--SWG---LKGFTVDKKTK 55
           MR+EN SENR K+LKFADQNQ       KT+S  NPS+ RS  SWG   +KGF+ DKK K
Sbjct: 1   MREENPSENRVKSLKFADQNQ------GKTSS--NPSRLRSASSWGSHIVKGFSADKKNK 52

Query: 56  SQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRR 115
            QTTA +KK+PLT  SSD+ NQKN +V SHSRVKRSLIGDL+CS+N +QVHP  Y ++R 
Sbjct: 53  LQTTAAAKKVPLT--SSDIVNQKNPLVTSHSRVKRSLIGDLSCSVNASQVHPQLYNSNRT 110

Query: 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIV 175
           +SS  RDLFLELD LRSLLQESKEREFKLQAEL E+KRNP++L+LERELE KK E +E+ 
Sbjct: 111 KSS--RDLFLELDHLRSLLQESKEREFKLQAELLEFKRNPEILDLERELEVKKSEVNELS 168

Query: 176 RRVGMLEDEKTSLSEQLAALSVILERKND--NKNAINMGSSSSQ-NLEMEVVELRRLNKE 232
           ++V +LE EKTSLSEQL+ L+ I ER+ +   +  + + S+ SQ  LEMEVVELRRLNKE
Sbjct: 169 QKVRLLESEKTSLSEQLSGLASIAERREELLKREDLEISSAPSQRTLEMEVVELRRLNKE 228

Query: 233 LQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292
           LQ++KR+L+C+ SS E+QL +L+K  ESD ++ I+AEA +LRHTNEDL KQVE LQMSRL
Sbjct: 229 LQLQKRDLSCRLSSTESQLNTLSKVYESDTVANIQAEASLLRHTNEDLCKQVEDLQMSRL 288

Query: 293 NEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSG 352
           NEVEEL YLRWVNSCLR+EL+NSCS TNS+K SSPN+IE   E+  S   Q +  LEYS 
Sbjct: 289 NEVEELVYLRWVNSCLRNELRNSCSVTNSDKTSSPNSIEGSRESDSSFSCQTDDSLEYSS 348

Query: 353 GRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELM 412
            +RL+ IKK KKWPI SE++ NL+C DN+L+K+WV  EEGRSPRRRHSISGS C AE+L+
Sbjct: 349 IKRLNLIKKLKKWPIISEDLPNLDCPDNLLEKSWVDPEEGRSPRRRHSISGSKCSAEDLV 408

Query: 413 PNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLR 470
            +KRRQSDGFMC KE E E E L SQKY+    Q+PQ   N  E  +  + L+VEKR LR
Sbjct: 409 QSKRRQSDGFMCPKEMEKEAEPLVSQKYELGIVQKPQLWGNCQETGKFMASLDVEKRALR 468

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEF 530
           +PNPPPRPS  +S G KE   AQIP PPP   PPPPPP PKFS +STTG+VQRAPQVVEF
Sbjct: 469 IPNPPPRPSGALSSGPKEMVLAQIPPPPP--PPPPPPPPPKFSARSTTGIVQRAPQVVEF 526

Query: 531 YHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI 590
           YHSLMKRDSRKDSSNGG+ + P+VANVRS+MIGEIENRSS+LLAIKADV TQGEFVNSLI
Sbjct: 527 YHSLMKRDSRKDSSNGGIYDTPDVANVRSNMIGEIENRSSYLLAIKADVETQGEFVNSLI 586

Query: 591 REVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 650
           REVNNAVYQNIEDVVAFVKWLDDEL FLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK
Sbjct: 587 REVNNAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 646

Query: 651 LESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           LESEVSYYKDDPRVPCD+ALKKMV+LSEK
Sbjct: 647 LESEVSYYKDDPRVPCDIALKKMVALSEK 675

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740902|emb|CBI31084.3| unnamed protein product [Vitis vinifera]

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/689 (67%), Positives = 545/689 (79%), Gaps = 44/689 (6%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRS--SWG---LKGFTVDKKTK 55
           MR+EN SENR K+LKFADQNQ       KT+S  NPS+ RS  SWG   +KGF+ DKK K
Sbjct: 1   MREENPSENRVKSLKFADQNQ------GKTSS--NPSRLRSASSWGSHIVKGFSADKKNK 52

Query: 56  SQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRR 115
            QTTA +KK+PLT  SSD+ NQKN +V SHSRVKRSLIGDL+CS+N +QVHP  Y ++R 
Sbjct: 53  LQTTAAAKKVPLT--SSDIVNQKNPLVTSHSRVKRSLIGDLSCSVNASQVHPQLYNSNRT 110

Query: 116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIV 175
           +SS  RDLFLELD LRSLLQESKEREFKLQAEL E+KRNP++L+LERELE KK E +E+ 
Sbjct: 111 KSS--RDLFLELDHLRSLLQESKEREFKLQAELLEFKRNPEILDLERELEVKKSEVNELS 168

Query: 176 RRVGMLEDEKTSLSEQLAALSVILERKND--NKNAINMGSSSSQ-NLEMEVVELRRLNKE 232
           ++V +LE EKTSLSEQL+ L+ I ER+ +   +  + + S+ SQ  LEMEVVELRRLNKE
Sbjct: 169 QKVRLLESEKTSLSEQLSGLASIAERREELLKREDLEISSAPSQRTLEMEVVELRRLNKE 228

Query: 233 LQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL 292
           LQ++KR+L+C+ SS E+QL +L+K  ESD ++ I+AEA +LRHTNEDL KQVE LQMSRL
Sbjct: 229 LQLQKRDLSCRLSSTESQLNTLSKVYESDTVANIQAEASLLRHTNEDLCKQVEDLQMSRL 288

Query: 293 NEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSG 352
           NEVEEL YLRWVNSCLR+EL+NSCS TNS+K SSPN+IE   E+  S   Q +  LEYS 
Sbjct: 289 NEVEELVYLRWVNSCLRNELRNSCSVTNSDKTSSPNSIEGSRESDSSFSCQTDDSLEYSS 348

Query: 353 GRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELM 412
            +RL+ IKK KKWPI SE++ NL+C DN+L+K+WV  EEGRSPRRRHSISGS C AE+L+
Sbjct: 349 IKRLNLIKKLKKWPIISEDLPNLDCPDNLLEKSWVDPEEGRSPRRRHSISGSKCSAEDLV 408

Query: 413 PNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLR 470
            +KRRQSDGFMC KE E E E L SQKY+    Q+PQ   N  E  +  + L+VEKR LR
Sbjct: 409 QSKRRQSDGFMCPKEMEKEAEPLVSQKYELGIVQKPQLWGNCQETGKFMASLDVEKRALR 468

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEF 530
           +PNPPPRPS  +S G KE                       FS +STTG+VQRAPQVVEF
Sbjct: 469 IPNPPPRPSGALSSGPKE----------------------MFSARSTTGIVQRAPQVVEF 506

Query: 531 YHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI 590
           YHSLMKRDSRKDSSNGG+ + P+VANVRS+MIGEIENRSS+LLAIKADV TQGEFVNSLI
Sbjct: 507 YHSLMKRDSRKDSSNGGIYDTPDVANVRSNMIGEIENRSSYLLAIKADVETQGEFVNSLI 566

Query: 591 REVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 650
           REVNNAVYQNIEDVVAFVKWLDDEL FLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK
Sbjct: 567 REVNNAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 626

Query: 651 LESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           LESEVSYYKDDPRVPCD+ALKKMV+LSEK
Sbjct: 627 LESEVSYYKDDPRVPCDIALKKMVALSEK 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433527|ref|XP_004134549.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/689 (66%), Positives = 538/689 (78%), Gaps = 23/689 (3%)

Query: 1   MRDENASENRAKTLKFADQNQPPK--SQNTKTNSSINPSKPR--SSWG---LKGFTVDKK 53
           M+++N  E R K  +FADQNQ PK  +QN    S+ N SK R  SSWG   +KGF+ DK+
Sbjct: 1   MKEDNPLEIRGKPSRFADQNQNPKCLNQNNAKGSTGNGSKLRAASSWGSHIVKGFSTDKR 60

Query: 54  TKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTH 113
           TK+Q+    KK P   N SD+ NQK   V SHSR+KRS+IGDLACS NPAQVHP SYQTH
Sbjct: 61  TKAQSNLQPKKAPPLGN-SDLVNQKEKFVPSHSRIKRSIIGDLACSANPAQVHPQSYQTH 119

Query: 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDE 173
           RRQS  SRDLF+ELD LRSLL ESK+REF+LQ EL+E KRN +  ELERELE KK+E D 
Sbjct: 120 RRQS--SRDLFVELDQLRSLLNESKQREFELQNELAELKRNTRNYELERELEEKKVELDS 177

Query: 174 IVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233
           + ++V +LE+++ +LSEQL  L  + E++ + + A         N+E+EVVELRRLNKEL
Sbjct: 178 LAKKVSVLEEDRRALSEQLVTLPSVSEKQEEQQTA-------PGNVEVEVVELRRLNKEL 230

Query: 234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293
           Q++KRNLAC+ SS+E++L  LAK SES+ ++KIKAE  +LRHTNEDL KQVEGLQMSRLN
Sbjct: 231 QLQKRNLACRLSSVESELACLAKNSESEAVAKIKAEVSLLRHTNEDLCKQVEGLQMSRLN 290

Query: 294 EVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGG 353
           EVEELAYLRWVNSCLR EL+NS  + NS   SSP  +E   E +GSL +Q  + +EYS  
Sbjct: 291 EVEELAYLRWVNSCLRSELRNSSPSANSGSPSSPQPVERSSEAIGSLSSQ-KEYMEYSSA 349

Query: 354 RRLSFIKKFKKWPIASEEMSNLECQD-NVLDKTWVQLEEGRSPRRRHSISGSNCRAEELM 412
           +R++ IKK KKWPI  E++SNL+C D N+LDK WV  EEGRSPRRRHSISG+ C  EEL 
Sbjct: 350 KRINLIKKLKKWPITDEDLSNLDCSDNNLLDKNWVDTEEGRSPRRRHSISGAKCWPEELE 409

Query: 413 PNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLR 470
           PNKRRQSDGFMC KE E + + LSSQKYD    QRP    N  E NRN + L+VEKR LR
Sbjct: 410 PNKRRQSDGFMCAKEMEKDVDPLSSQKYDLGVIQRPHVLGNCHETNRNFASLDVEKRALR 469

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEF 530
           +PNPPPRPSC IS   KEE +AQ+P   PLP PPPPPP PKFS +S TG+VQRAPQVVEF
Sbjct: 470 IPNPPPRPSCSISSEPKEENRAQVPP--PLPPPPPPPPLPKFSVRSATGMVQRAPQVVEF 527

Query: 531 YHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI 590
           YHSLMKRDSRKDSSNG +C  P+V+NVRSSMIGEIENRSSHLLAIKAD+ TQGEFVNSLI
Sbjct: 528 YHSLMKRDSRKDSSNGTICNVPDVSNVRSSMIGEIENRSSHLLAIKADIETQGEFVNSLI 587

Query: 591 REVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 650
           REVNNAVY  IED+V FVKWLDDEL FLVDERAVLKHFDWPE+KADTLREAAFGYRDLKK
Sbjct: 588 REVNNAVYLKIEDIVEFVKWLDDELCFLVDERAVLKHFDWPERKADTLREAAFGYRDLKK 647

Query: 651 LESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           LE E+S YKDDPR+PCD+ALKKMV+LSEK
Sbjct: 648 LECEISAYKDDPRLPCDIALKKMVALSEK 676

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490629|ref|XP_004158660.1| PREDICTED: LOW QUALITY PROTEIN: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/689 (66%), Positives = 538/689 (78%), Gaps = 23/689 (3%)

Query: 1   MRDENASENRAKTLKFADQNQPPK--SQNTKTNSSINPSKPR--SSWG---LKGFTVDKK 53
           M+++N  E R K  +FADQNQ PK  +QN    S+ N SK R  SSWG   +KGF+ DK+
Sbjct: 1   MKEDNPLEIRGKPSRFADQNQNPKCLNQNNAKGSTGNGSKLRAASSWGSHIVKGFSTDKR 60

Query: 54  TKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTH 113
           TK+Q+    KK P   N SD+ NQK   V SHSR+KRS+IGDLACS NPAQVHP SYQTH
Sbjct: 61  TKAQSNLQPKKAPPLGN-SDLVNQKEKFVPSHSRIKRSIIGDLACSANPAQVHPQSYQTH 119

Query: 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDE 173
           RRQS  SRDLF+ELD LRSLL ESK+REF+LQ EL+E KRN +  ELERELE KK+E D 
Sbjct: 120 RRQS--SRDLFVELDQLRSLLNESKQREFELQNELAELKRNTRNYELERELEEKKVELDS 177

Query: 174 IVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233
           + ++V +LE+++ +LSEQL  L  + E++ + + A         N+E+EVVELRRLNKEL
Sbjct: 178 LAKKVSVLEEDRRALSEQLVTLPSVSEKQEEQQTA-------PGNVEVEVVELRRLNKEL 230

Query: 234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN 293
           Q++KRNLAC+ SS+E++L  LAK SES+ ++KIKAE  +LRHTNEDL KQVEGLQMSRLN
Sbjct: 231 QLQKRNLACRLSSVESELACLAKNSESEAVAKIKAEVSLLRHTNEDLCKQVEGLQMSRLN 290

Query: 294 EVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGG 353
           EVEELAYLRWVNSCLR EL+NS  + NS   SSP  +E   E +GSL +Q  + +EYS  
Sbjct: 291 EVEELAYLRWVNSCLRSELRNSSPSANSGSPSSPQPVERSSEAIGSLSSQ-KEYMEYSSA 349

Query: 354 RRLSFIKKFKKWPIASEEMSNLECQD-NVLDKTWVQLEEGRSPRRRHSISGSNCRAEELM 412
           +R++ IKK KKWPI  E++SNL+C D N+LDK WV  EEGRSPRRRHSISG+ C  EEL 
Sbjct: 350 KRINLIKKLKKWPITDEDLSNLDCSDNNLLDKNWVDTEEGRSPRRRHSISGAKCWPEELE 409

Query: 413 PNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKRVLR 470
           PNKRRQSDGFMC KE E + + LSSQKYD    QRP    N  E NRN + L+VEKR LR
Sbjct: 410 PNKRRQSDGFMCAKEMEKDVDPLSSQKYDLGVIQRPHVWXNCHETNRNFASLDVEKRALR 469

Query: 471 VPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEF 530
           +PNPPPRPSC IS   KEE +AQ+P   PLP PPPPPP PKFS +S TG+VQRAPQVVEF
Sbjct: 470 IPNPPPRPSCSISSEPKEENRAQVPP--PLPPPPPPPPLPKFSVRSATGMVQRAPQVVEF 527

Query: 531 YHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNSLI 590
           YHSLMKRDSRKDSSNG +C  P+V+NVRSSMIGEIENRSSHLLAIKAD+ TQGEFVNSLI
Sbjct: 528 YHSLMKRDSRKDSSNGTICNVPDVSNVRSSMIGEIENRSSHLLAIKADIETQGEFVNSLI 587

Query: 591 REVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDLKK 650
           REVNNAVY  IED+V FVKWLDDEL FLVDERAVLKHFDWPE+KADTLREAAFGYRDLKK
Sbjct: 588 REVNNAVYLKIEDIVEFVKWLDDELCFLVDERAVLKHFDWPERKADTLREAAFGYRDLKK 647

Query: 651 LESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           LE E+S YKDDPR+PCD+ALKKMV+LSEK
Sbjct: 648 LECEISAYKDDPRLPCDIALKKMVALSEK 676

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564055|ref|XP_003550272.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/694 (61%), Positives = 518/694 (74%), Gaps = 40/694 (5%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWG---LKGFTVDKKTKSQ 57
           M++EN SENR+K  KF+DQNQ PK QNTK  +  N +K R  WG   +KGF+ DKKTKS 
Sbjct: 1   MKEENPSENRSKASKFSDQNQAPKPQNTKGANLNNNNKTRL-WGAHIVKGFSADKKTKS- 58

Query: 58  TTATSKKLPL-----TTNSSDVTNQKNS----IVASHSRVKRSLIGDLACSMNPAQVHPN 108
               SKKL         + + VTNQ NS    + +SHSRVKRSLIGDL+CS+NPAQVHP+
Sbjct: 59  --FASKKLTSSTTTTAISENVVTNQNNSNKPFVPSSHSRVKRSLIGDLSCSINPAQVHPH 116

Query: 109 SYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKK 168
           ++ THRRQSS   DLF ELD +R LLQESKERE KL AELSE ++             K 
Sbjct: 117 AFPTHRRQSST--DLFTELDHMRGLLQESKERESKLHAELSECRK-------------KM 161

Query: 169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRR 228
            E DE+V+RVG+LE EK +L+EQL A     E K + +    +     QNLE+EVVELRR
Sbjct: 162 TEVDEVVKRVGLLEQEKATLTEQLGAALSCEEVKGEEEQHKEV---KVQNLELEVVELRR 218

Query: 229 LNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ 288
           LNKELQM+KRNL+C+ SS+E QL    K+SESD+++KIKAEA +LR TNEDL KQVEGLQ
Sbjct: 219 LNKELQMQKRNLSCRLSSLEAQLACPNKSSESDVVAKIKAEASLLRLTNEDLCKQVEGLQ 278

Query: 289 MSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPN-QNNKV 347
           +SRLNEVEELAYLRWVNSCLR+EL+N+CS  +S+K SSP+++    ++  S  + Q N+ 
Sbjct: 279 ISRLNEVEELAYLRWVNSCLRNELKNTCSALDSDKPSSPHSVVSSSDDCVSSFSDQTNRY 338

Query: 348 LEYSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCR 407
                  R + +KK KKWPI S+++S +ECQ ++++K  ++ + G SPRRRHSISGSN  
Sbjct: 339 SNCGSANRFNMVKKPKKWPITSDDLSQVECQGSLIEKNRIESDVGGSPRRRHSISGSNYS 398

Query: 408 AEELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVE 465
            EE+  +KRRQSD F+C+KE E E  +LS Q+   +  QRPQ+ +N  E N+     +VE
Sbjct: 399 EEEVSLSKRRQSDCFVCSKEMEKESVALSVQQSGLEIVQRPQYFSNCQEANKLLVSSDVE 458

Query: 466 KRVLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAP 525
           KR LR+PNPPPRPSC IS  TK+E  AQ+P PP    PPPPPP   F+ +S    V+RAP
Sbjct: 459 KRALRIPNPPPRPSCSISIKTKQETSAQVPLPP---PPPPPPPPMNFASRSNMASVKRAP 515

Query: 526 QVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEF 585
           QVVE YHSLMKRDSRKDSSNGG+ +AP+V++VRSSMIGEIENRSSHLLAIKAD+ TQGEF
Sbjct: 516 QVVELYHSLMKRDSRKDSSNGGLSDAPDVSDVRSSMIGEIENRSSHLLAIKADIETQGEF 575

Query: 586 VNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGY 645
           VNSLIREVN+AVYQNIEDVVAFVKWLDDEL FLVDERAVLKHFDWPEKKADTLREAAFGY
Sbjct: 576 VNSLIREVNDAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGY 635

Query: 646 RDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           +DLKKLESEVS YKDDPR+P D+ALKKMV+LSEK
Sbjct: 636 QDLKKLESEVSSYKDDPRLPGDIALKKMVALSEK 669

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552350|ref|XP_003544531.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/692 (60%), Positives = 513/692 (74%), Gaps = 39/692 (5%)

Query: 1   MRDENASENRAKTLKFADQNQPPKSQNTKTNSSINPSKPRSSWG---LKGFTVDKKTKSQ 57
           MR+EN SENR+K  KF+DQNQ PK QNTK  +  N S+ R  WG   +KGF+ DKKTK  
Sbjct: 1   MREENPSENRSKASKFSDQNQAPKPQNTKGANPNNNSRTRL-WGAHIVKGFSADKKTK-- 57

Query: 58  TTATSKKLPLT----TNSSDVTNQKNS---IVASHSRVKRSLIGDLACSMNPAQVHPNSY 110
               SKKL  +     + + VTNQ N+   + +S+SRVKRSLIGDL+CS+NPAQVHP+++
Sbjct: 58  -PLASKKLTSSTTTTISENVVTNQNNNKPFVPSSNSRVKRSLIGDLSCSINPAQVHPHAF 116

Query: 111 QTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIE 170
            THRRQSS   DLF ELD +R LLQESKERE KL AEL+E ++             K  E
Sbjct: 117 PTHRRQSST--DLFTELDHMRGLLQESKERESKLNAELAECRK-------------KVSE 161

Query: 171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLN 230
            DE+++RV +LE EK  L+EQL AL+    +  + ++         QNLE+EVVELRRLN
Sbjct: 162 VDEVMKRVDLLEQEKAILTEQLGALTCEEVKGEEEQHK----EVKVQNLELEVVELRRLN 217

Query: 231 KELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS 290
           KELQM+KRNL+C+ SS++ QL    K+SESD+++KIKAEA +LR TNEDL KQVEGLQ+S
Sbjct: 218 KELQMQKRNLSCRLSSLDAQLACPNKSSESDVVAKIKAEASLLRLTNEDLCKQVEGLQIS 277

Query: 291 RLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVEN-VGSLPNQNNKVLE 349
           RLNEVEELAYLRWVNSCLR+EL+N+CS  NS+K SSP+++     + V S  +Q  +   
Sbjct: 278 RLNEVEELAYLRWVNSCLRNELKNTCSALNSDKPSSPHSVVSSSGDCVSSFSDQATRYSN 337

Query: 350 YSGGRRLSFIKKFKKWPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSISGSNCRAE 409
                R + +KK KKWPI S+ +S +E Q +++ K W++ + G SPRRRHSISGSN   E
Sbjct: 338 CGSENRFNMVKKPKKWPITSDHLSQVEFQGSLIRKNWIESDVGGSPRRRHSISGSNYSEE 397

Query: 410 ELMPNKRRQSDGFMCTKETEHEEESLSSQKYDFD--QRPQFSANRLEMNRNASVLEVEKR 467
           E++ +KRRQSD F+C+KE E E   LS Q+   +  QRPQ   N  E N+     +VEKR
Sbjct: 398 EVVLSKRRQSDCFVCSKEMEKESVPLSVQQSGLEIVQRPQHFGNFQEANKLLVSSDVEKR 457

Query: 468 VLRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQV 527
            LR+PNPPPRPSC IS  TK+E  AQ+P PPP P PPPP  +   + +S T +V+R PQV
Sbjct: 458 ALRIPNPPPRPSCSISSKTKQETSAQVPPPPPPPPPPPPMNS---ASRSNTTMVKREPQV 514

Query: 528 VEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVN 587
           VE YHSLMKRDSRKDSSNGG+ +AP+VA+VRSSMIGEIENRSSHLLAIKAD+ TQGEFVN
Sbjct: 515 VELYHSLMKRDSRKDSSNGGLSDAPDVADVRSSMIGEIENRSSHLLAIKADIETQGEFVN 574

Query: 588 SLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRD 647
           SLIREVNNAVYQNI+DVVAFVKWLDDEL FLVDERAVLKHFDWPEKKADTLREAAFGY+D
Sbjct: 575 SLIREVNNAVYQNIDDVVAFVKWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYQD 634

Query: 648 LKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           LKKLESEVS YKDDPR+PCD+ LKKMV+LSEK
Sbjct: 635 LKKLESEVSSYKDDPRLPCDIVLKKMVALSEK 666

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437461|ref|XP_003589006.1| Chloroplast unusual positioning 1A [Medicago truncatula] gi|355478054|gb|AES59257.1| Chloroplast unusual positioning 1A [Medicago truncatula]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/691 (59%), Positives = 496/691 (71%), Gaps = 71/691 (10%)

Query: 5   NASENRAKTLKFADQNQPPKSQNTKTNSSINP--SKPRSSWG---LKGFTVDKKTKSQTT 59
           N SEN+ K  KF+DQNQPPK Q TKT +  N   SKPR  WG   +KGF+ DKKTK   T
Sbjct: 8   NPSENKTKVSKFSDQNQPPKLQTTKTTNPNNNNHSKPRL-WGAHIVKGFSADKKTKQLPT 66

Query: 60  ATSKKLPLTTNSSDVTNQKNS--IVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQS 117
              +     T S  VTNQKN    V  HSRVKRSL+GDL+CS    QVHP+++ THRRQS
Sbjct: 67  KKQQNTTTITTSDVVTNQKNVNPFVPPHSRVKRSLMGDLSCS----QVHPHAFPTHRRQS 122

Query: 118 SGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRR 177
           S   DLF ELD +RSLLQESKERE KL AEL E ++N             + E DE+V++
Sbjct: 123 ST--DLFTELDHMRSLLQESKEREAKLNAELVECRKN-------------QSEVDELVKK 167

Query: 178 VGMLEDEKTSLSEQLAALS--VILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQM 235
           V +LE+EK+ LSEQL ALS    LER+ ++K+       S+QNLE+EVVELRRLNKEL M
Sbjct: 168 VALLEEEKSGLSEQLVALSRSCGLERQEEDKDG------STQNLELEVVELRRLNKELHM 221

Query: 236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV 295
           +KRNL C+ SSME+QL+    +SESDI++K KAEA +LR TNEDLSKQVEGLQ SRLNEV
Sbjct: 222 QKRNLTCRLSSMESQLSCSDNSSESDIVAKFKAEASLLRLTNEDLSKQVEGLQTSRLNEV 281

Query: 296 EELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRR 355
           EELAYLRWVNSCLR EL+N+CST +S+K SSP +         S  + ++   +      
Sbjct: 282 EELAYLRWVNSCLRTELKNTCSTLDSDKLSSPQS-----VVSSSGDSISSFSDQCGSANS 336

Query: 356 LSFIKKFKKWPI-ASEEMSNLECQDN-VLDKTWVQ-LEEGRSPRRRHSISGSNCRAEEL- 411
            + +KK KKWPI +S+++S +EC +N ++DK W++ + EG S RRRHSISGSN   EE+ 
Sbjct: 337 FNLVKKPKKWPITSSDQLSQVECTNNSIIDKNWIESISEG-SNRRRHSISGSNSSEEEVS 395

Query: 412 MPNKRRQS---DGFMCTKETEHEEESLSSQKYDFDQRPQFSANRLEMNRNASVLEVEKRV 468
           + +KRRQS   D F C KE E E   +          P F               +EKR 
Sbjct: 396 VLSKRRQSNCFDSFECLKEIEKESVPM----------PLF----------VQQCALEKRA 435

Query: 469 LRVPNPPPRPSCGISGGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVV 528
           LR+PNPPPRPSC IS  TK+E  AQ+  PP    PPPPPP   F+ +  T +V+RAPQVV
Sbjct: 436 LRIPNPPPRPSCSISSKTKQECSAQVQPPP---PPPPPPPPMSFASRGNTAMVKRAPQVV 492

Query: 529 EFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVATQGEFVNS 588
           E YHSLMKRDSR+DSS+GG+ +AP+VA+VRSSMIGEIENRSSHLLAIKAD+ TQGEFVNS
Sbjct: 493 ELYHSLMKRDSRRDSSSGGLSDAPDVADVRSSMIGEIENRSSHLLAIKADIETQGEFVNS 552

Query: 589 LIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYRDL 648
           LIREVN+AVY+NI+DVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGY+DL
Sbjct: 553 LIREVNDAVYENIDDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGYQDL 612

Query: 649 KKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           KKLESEVS YKDDPR+PCD+ALKKMV+LSEK
Sbjct: 613 KKLESEVSSYKDDPRLPCDIALKKMVALSEK 643

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242080449|ref|XP_002444993.1| hypothetical protein SORBIDRAFT_07g002450 [Sorghum bicolor] gi|241941343|gb|EES14488.1| hypothetical protein SORBIDRAFT_07g002450 [Sorghum bicolor]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/703 (53%), Positives = 470/703 (66%), Gaps = 59/703 (8%)

Query: 14  LKFADQNQPPKSQ-NTKTNSSINPSKPRSSWG---LKGFTVDKKTKSQTTATSKKLPLTT 69
           + F +Q +P +S+ ++K+NSS    K  SSWG   +KGFT DKKTK      SKK PL  
Sbjct: 5   IMFDNQTKPCRSRVDSKSNSSSLKPKFGSSWGSQIVKGFTADKKTKKTAAIASKKPPLA- 63

Query: 70  NSSDVTNQKNSIVASHSRVKRSLIGDLACSMNPAQVHPNSYQTHRRQSSGSRDLFLELDS 129
           N  +V NQ N  +  HSRVKRSLIGD  CS   AQVHP+ +  H  +S  S DLFLELD 
Sbjct: 64  NVENV-NQTNQQIPYHSRVKRSLIGDFPCSPAGAQVHPHVFDCHNIRSPASHDLFLELDH 122

Query: 130 LRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLS 189
           LR  L+ESKERE  LQ+EL + + NPKV ELE+EL++ + E D + R    LE EKT++S
Sbjct: 123 LREQLRESKERELALQSELRQCRENPKVSELEKELDSMRDEVDRLARLKTSLEAEKTNIS 182

Query: 190 EQLAALSVILERKNDNKN---------AINMGSSSSQNLEMEVVELRRLNKELQMEKRNL 240
           EQL+ALS ++E   +N           ++N  ++ S+NLE EVVELRRLNKELQ +KRNL
Sbjct: 183 EQLSALSSMVEHHEENVRLDGHGNRIPSVNGDNTPSENLEFEVVELRRLNKELQFQKRNL 242

Query: 241 ACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY 300
           A K SS E++L  L K +ESDI++K++AEA +LRHTN +LSKQVEGLQMSRL EVEELAY
Sbjct: 243 AIKLSSAESKLAGLEKNAESDIVAKVQAEASLLRHTNANLSKQVEGLQMSRLTEVEELAY 302

Query: 301 LRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIK 360
           LRW+NSCLR EL NS     +      N +    E  G   +  N   E S   + S  +
Sbjct: 303 LRWINSCLRHELCNSDQAARAMTDIDCNGVMAFNEGDGGEGDAKNA--EDSSDIKFSIAE 360

Query: 361 KFKKWPIASEEMSNLECQ----DNVLDKTWVQLEEGRSPRRRHSISGSNCRAEELMPNKR 416
           + K+W       ++  CQ    + +LD+ W++  E RSP RRHS+ G    A++    KR
Sbjct: 361 RIKQW-----SQNDKSCQASKKEALLDRAWIEAAEARSPTRRHSLGGPKGCAQDFNIIKR 415

Query: 417 RQSDGFM-----------CTKE-TEHEEESLSSQKYDF--DQRPQFSANRLEMNRNASVL 462
           RQSD F+           C K+ T  E+  L   KYDF   +  +F  ++ E+ + +  L
Sbjct: 416 RQSDTFISLLDATDESFACNKDPTIREKRDLLVDKYDFGRSESSRFVLSKPEVCK-SQCL 474

Query: 463 EVEKRVLRVPNPPPRPSCGIS------GGTKEERQAQIPQPPPLPRPPPPPPAPKFSGKS 516
           +VEKR LR+PNPPPRPS  +S      G T    +   P P            PKFS KS
Sbjct: 475 DVEKRALRIPNPPPRPSVSVSNSGPSNGSTVNPPRPPPPPP-----------PPKFSSKS 523

Query: 517 TTGVVQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIK 576
           T GV++RAPQV E YHSLM+RD++KD+S+GG+CEA N ANVRSSMIGEIENRSSHL AIK
Sbjct: 524 T-GVMKRAPQVAELYHSLMRRDTKKDTSSGGICEAANSANVRSSMIGEIENRSSHLQAIK 582

Query: 577 ADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKAD 636
           ADV TQGEFV SLI+EV +A Y++IEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKAD
Sbjct: 583 ADVETQGEFVKSLIKEVTSAAYKDIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKAD 642

Query: 637 TLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
           TLREAAFGY+DLKKLESEVS YKDDPR+PC++ALKKMV+LSEK
Sbjct: 643 TLREAAFGYQDLKKLESEVSNYKDDPRLPCEIALKKMVTLSEK 685

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	679
TAIR|locus:2102385	1004	CHUP1 "CHLOROPLAST UNUSUAL POS	0.234	0.158	0.606	2e-77
TAIR|locus:2831359	642	AT4G18570 [Arabidopsis thalian	0.234	0.247	0.646	2.2e-58
TAIR|locus:2007755	558	AT1G48280 "AT1G48280" [Arabido	0.232	0.283	0.518	1.1e-46
TAIR|locus:2007477	392	AT1G07120 "AT1G07120" [Arabido	0.235	0.408	0.461	2.2e-33
TAIR|locus:2034091	573	AR791 "AT1G52080" [Arabidopsis	0.139	0.165	0.402	1.7e-09
UNIPROTKB|F1NCD4	1335	MYH9 "Myosin-9" [Gallus gallus	0.422	0.214	0.217	6.6e-07
UNIPROTKB|P14105	1959	MYH9 "Myosin-9" [Gallus gallus	0.422	0.146	0.217	1.6e-06
ASPGD|ASPL0000038802	1207	pcpA [Emericella nidulans (tax	0.447	0.251	0.222	4.4e-06
ZFIN|ZDB-GENE-030131-4044	581	ccdc102a "coiled-coil domain c	0.204	0.239	0.333	8.9e-06
CGD|CAL0005917	453	orf19.6893 [Candida albicans (	0.291	0.437	0.246	1.7e-05

TAIR|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
 Identities = 97/160 (60%), Positives = 122/160 (76%)

Query:   521 VQRAPQVVEFYHSLMKRDSRKDSSNGGVCEAP-NVANVRSSMIGEIENRSSHLLAIKADV 579
             V RAP++VEFY SLMKR+S+K+ +   +     N +  R++MIGEIENRS+ LLA+KADV
Sbjct:   718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777

Query:   580 ATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLR 639
              TQG+FV SL  EV  + + +IED++AFV WLD+EL FLVDERAVLKHFDWPE KAD LR
Sbjct:   778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALR 837

Query:   640 EAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
             EAAF Y+DL KLE +V+ + DDP + C+ ALKKM  L EK
Sbjct:   838 EAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEK 877

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2831359 AT4G18570 [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 2.2e-58, Sum P(3) = 2.2e-58
 Identities = 106/164 (64%), Positives = 126/164 (76%)

Query:   521 VQRAPQVVEFYHSLMKRDS---RKDSSNGGVCEAPNV-ANVRS-SMIGEIENRSSHLLAI 575
             V+R P+VVEFYHSLM+RDS   R+DS+ GG   A  + AN  +  MIGEIENRS +LLAI
Sbjct:   353 VRRVPEVVEFYHSLMRRDSTNSRRDSTGGGNAAAEAILANSNARDMIGEIENRSVYLLAI 412

Query:   576 KADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKA 635
             K DV TQG+F+  LI+EV NA + +IEDVV FVKWLDDEL +LVDERAVLKHF+WPE+KA
Sbjct:   413 KTDVETQGDFIRFLIKEVGNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHFEWPEQKA 472

Query:   636 DTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
             D LREAAF Y DLKKL SE S +++DPR     ALKKM +L EK
Sbjct:   473 DALREAAFCYFDLKKLISEASRFREDPRQSSSSALKKMQALFEK 516

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2007755 AT1G48280 "AT1G48280" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 82/158 (51%), Positives = 113/158 (71%)

Query:   522 QRAPQVVEFYHSLMKRDSRKDSSNGGVCEAPNVANVRSSMIGEIENRSSHLLAIKADVAT 581
             Q++P V + +  L K+D+ ++ S         V +  +S++GEI+NRS+HL+AIKAD+ T
Sbjct:   280 QKSPPVSQLFQLLNKQDNSRNLSQSVNGNKSQVNSAHNSIVGEIQNRSAHLIAIKADIET 339

Query:   582 QGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREA 641
             +GEF+N LI++V    + ++EDV+ FV WLD EL  L DERAVLKHF WPEKKADTL+EA
Sbjct:   340 KGEFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWPEKKADTLQEA 399

Query:   642 AFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
             A  YR+LKKLE E+S Y DDP +   +ALKKM +L +K
Sbjct:   400 AVEYRELKKLEKELSSYSDDPNIHYGVALKKMANLLDK 437

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2007477 AT1G07120 "AT1G07120" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
 Identities = 79/171 (46%), Positives = 110/171 (64%)

Query:   515 KSTTGV--VQRAPQVVEFYHSLMKRDSR---KDSSNGGVCEAPNVANVRSSMIGEIENRS 569
             K T G   V+RAP+VVEFY +L KR+S    K + NG +  A N      +MIGEIENRS
Sbjct:   120 KRTLGKRSVRRAPEVVEFYRALTKRESHMGNKINQNGVLSPAFN-----RNMIGEIENRS 174

Query:   570 SHLLAIKADVATQGEFVNSLIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFD 629
              +L  IK+D     + ++ LI +V  A + +I +V  FVKW+D+EL  LVDERAVLKHF 
Sbjct:   175 KYLSDIKSDTDRHRDHIHILISKVEAATFTDISEVETFVKWIDEELSSLVDERAVLKHFP 234

Query:   630 -WPEKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSLSEK 679
              WPE+K D+LREAA  Y+  K L +E+  +KD+P+     AL+++ SL ++
Sbjct:   235 KWPERKVDSLREAACNYKRPKNLGNEILSFKDNPKDSLTQALQRIQSLQDR 285

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2034091 AR791 "AT1G52080" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 39/97 (40%), Positives = 58/97 (59%)

Query:   217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHT 276
             ++LE E+ EL   N  LQ E   L+ K  S+  Q+ + +K  E + I  ++ +   LR  
Sbjct:   277 RDLESEINELTDTNTRLQFENFELSEKLESV--QIIANSKLEEPEEIETLREDCNRLRSE 334

Query:   277 NEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQ 313
             NE+L K VE LQ  R  ++E+L YLRW+N+CLR EL+
Sbjct:   335 NEELKKDVEQLQGDRCTDLEQLVYLRWINACLRYELR 371

GO:0003779 "actin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

UNIPROTKB|F1NCD4 MYH9 "Myosin-9" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
 Identities = 67/308 (21%), Positives = 137/308 (44%)

Query:   150 EWKRNPKVLELERELEAKKIE-NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA 208
             E K+  ++ +  R+LE    + +D+I      + + K  LS++   L   L R  +    
Sbjct:   414 EEKQRQELEKTRRKLEGDSSDLHDQIAELQAQIAELKIQLSKKEEELQAALARVEEEAAQ 473

Query:   209 INMGSSSSQNLEMEVVELRR-LNKE------LQMEKRNLACKFSSMENQL--TSLAKASE 259
              NM     + LE ++ EL+  L  E       + +KR+L  +  +++ +L  T  + A++
Sbjct:   474 KNMALKKIRELESQITELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQ 533

Query:   260 SDIISKIKAEALVLRHTNEDLSK----QVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315
              ++ SK + E  VL+ T ED +K    Q++ ++      +EELA        ++  L+ +
Sbjct:   534 QELRSKREQEVTVLKKTLEDEAKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVKANLEKA 593

Query:   316 CSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNL 375
                  SE+A   N ++ +++  G   ++  KV       ++ F +  +     +E ++ L
Sbjct:   594 KQALESERAELSNEVKVLLQGKGDAEHKRKKVDAQLQELQVKFTEGERVKTELAERVNKL 653

Query:   376 ECQ-DNVLDKTWVQLEEGRSPRRRHSISGSNCR---AEELMPNKRRQSDGFMCT-KETEH 430
             + + DNV     +   + +S +     S    +    +EL+  + R    F    K+TE 
Sbjct:   654 QVELDNVTGL--LNQSDSKSIKLAKDFSALESQLQDTQELLQEETRLKLSFSTKLKQTED 711

Query:   431 EEESLSSQ 438
             E+ +L  Q
Sbjct:   712 EKNALKEQ 719

GO:0005524 "ATP binding" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0000212 "meiotic spindle organization" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0001768 "establishment of T cell polarity" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0001931 "uropod" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005826 "actomyosin contractile ring" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0006509 "membrane protein ectodomain proteolysis" evidence=IEA

GO:0007132 "meiotic metaphase I" evidence=IEA

GO:0007520 "myoblast fusion" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008305 "integrin complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016460 "myosin II complex" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0030220 "platelet formation" evidence=IEA

GO:0030224 "monocyte differentiation" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0032796 "uropod organization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043534 "blood vessel endothelial cell migration" evidence=IEA

GO:0051295 "establishment of meiotic spindle localization" evidence=IEA

UNIPROTKB|P14105 MYH9 "Myosin-9" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 67/308 (21%), Positives = 137/308 (44%)

Query:   150 EWKRNPKVLELERELEAKKIE-NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA 208
             E K+  ++ +  R+LE    + +D+I      + + K  LS++   L   L R  +    
Sbjct:  1039 EEKQRQELEKTRRKLEGDSSDLHDQIAELQAQIAELKIQLSKKEEELQAALARVEEEAAQ 1098

Query:   209 INMGSSSSQNLEMEVVELRR-LNKE------LQMEKRNLACKFSSMENQL--TSLAKASE 259
              NM     + LE ++ EL+  L  E       + +KR+L  +  +++ +L  T  + A++
Sbjct:  1099 KNMALKKIRELESQITELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQ 1158

Query:   260 SDIISKIKAEALVLRHTNEDLSK----QVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS 315
              ++ SK + E  VL+ T ED +K    Q++ ++      +EELA        ++  L+ +
Sbjct:  1159 QELRSKREQEVTVLKKTLEDEAKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVKANLEKA 1218

Query:   316 CSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEEMSNL 375
                  SE+A   N ++ +++  G   ++  KV       ++ F +  +     +E ++ L
Sbjct:  1219 KQALESERAELSNEVKVLLQGKGDAEHKRKKVDAQLQELQVKFTEGERVKTELAERVNKL 1278

Query:   376 ECQ-DNVLDKTWVQLEEGRSPRRRHSISGSNCR---AEELMPNKRRQSDGFMCT-KETEH 430
             + + DNV     +   + +S +     S    +    +EL+  + R    F    K+TE 
Sbjct:  1279 QVELDNVTGL--LNQSDSKSIKLAKDFSALESQLQDTQELLQEETRLKLSFSTKLKQTED 1336

Query:   431 EEESLSSQ 438
             E+ +L  Q
Sbjct:  1337 EKNALKEQ 1344

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0000910 "cytokinesis" evidence=ISS

GO:0001525 "angiogenesis" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0001726 "ruffle" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005826 "actomyosin contractile ring" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISS

GO:0008305 "integrin complex" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015629 "actin cytoskeleton" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0030220 "platelet formation" evidence=ISS

GO:0030224 "monocyte differentiation" evidence=ISS

GO:0031252 "cell leading edge" evidence=ISS

GO:0031532 "actin cytoskeleton reorganization" evidence=ISS

GO:0032154 "cleavage furrow" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0043234 "protein complex" evidence=ISS

GO:0043495 "protein anchor" evidence=ISS

GO:0043534 "blood vessel endothelial cell migration" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

ASPGD|ASPL0000038802 pcpA [Emericella nidulans (taxid:162425)]

 Score = 140 (54.3 bits), Expect = 4.4e-06, Sum P(3) = 4.4e-06
 Identities = 74/332 (22%), Positives = 147/332 (44%)

Query:   138 KEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV 197
             K+   +L+ EL   K   ++ EL+  L+  K  +D I  R      E+ +L E+  A   
Sbjct:   355 KDSLSELETELRRAKE--QLEELQDSLDQAK--SDAIEARTS----ERQALEEKERAEQN 406

Query:   198 ILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA 257
             + E  ++  N        ++ LE EV ELR+ N  L+ E  +   + + +E +L +  + 
Sbjct:   407 LQELHDEMSNKSISTKGLTRQLEEEVKELRQRNSTLKEELESKTQQMNDLEERLQNSRET 466

Query:   258 SESDI------ISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDE 311
             ++S+       +++++ E  V R   +DL+ Q++        + +E A L   +  L DE
Sbjct:   467 TDSERERLLEELTQVRREREVARQERDDLNVQLQEAHDELQRKTDEKALLHTRHHALTDE 526

Query:   312 LQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLEYSGGRRLSFIKKFKKWPIASEE 371
               N      +E A + + I E+ E++ ++  QN    E +   R  +++  ++     EE
Sbjct:   527 SSN----LQNELAKAQSNIRELQESLDTV-KQN--AAENAENLRSQYMEDIER---LQEE 576

Query:   372 MSNLECQDNVLDKTW-VQLEEGRSPRRRHSISGSNCRAEELMPNKRRQSDGFMCTKETEH 430
             + +L  +  + DK     LE+ R    R ++     RAE+     +R  +     + T  
Sbjct:   577 IESLHHE--IEDKEGQFALEQDRWESLRRNLQVQKDRAEDQAAGFKRTIEKLEQVEHTLT 634

Query:   431 EEESLSSQKYDFDQRPQFSANRLEMNRNASVL 462
              +ES   +  D ++   F+A  + ++R    L
Sbjct:   635 GKESKLQEVIDSEKARHFNAEAV-LSRQVKEL 665

GO:0005634 "nucleus" evidence=IDA

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0051417 "microtubule nucleation by spindle pole body" evidence=IMP

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030131-4044 ccdc102a "coiled-coil domain containing 102A" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 8.9e-06, P = 8.9e-06
 Identities = 52/156 (33%), Positives = 79/156 (50%)

Query:   143 KLQAELSEWKR-----NPKVLELERELEA-KKIENDEIVRRVGMLEDE---KTSLSEQLA 193
             KL+AELS+WK      N    E  ++L   K++  DE+ R    LEDE   +T++ ++LA
Sbjct:   309 KLEAELSQWKLKYEELNKSKQEALKQLNLLKEVHQDELGRMSEDLEDELGARTNMDKKLA 368

Query:   194 ALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL--QME--KRNLACKFSSMEN 249
              L   +ER    +NA   G    + LE E + L R NK+L  QME  +  LA K     +
Sbjct:   369 ELRTEMERLQV-ENAAEWGRR--ERLETEKLALERENKKLRTQMEDLEEQLARKRRQAAS 425

Query:   250 QLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285
              L +  K  +S++  + K E   LRH +  + KQ +
Sbjct:   426 ALDTDLKTIQSELFERNK-ELADLRHVHSKVKKQYQ 460

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0005917 orf19.6893 [Candida albicans (taxid:5476)]

 Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 51/207 (24%), Positives = 103/207 (49%)

Query:   143 KLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERK 202
             K Q   S  K   + +E  ++     +  DE ++     ED  ++ SE+ +  S  +++ 
Sbjct:     6 KKQNNSSSKKATKEDVEQSKQT-IDNVNKDEEIQETEPSEDTTSNESEEESTKSQKIDQT 64

Query:   203 NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDI 262
                +      +SS++ LE ++ +  R   E+Q    NL  K SSM+  + S  K SE+++
Sbjct:    65 GQTEQLDPSATSSTELLE-KLQQTERERDEIQQSYDNLVNKISSMKT-IFSKMKQSEAEL 122

Query:   263 ISKIK-AEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQN-SCSTTN 320
               K +  E+L     NE+L +Q++    S+++  + +  L+  N+ L +E +  S S T 
Sbjct:   123 EEKTELVESLTSE--NEELKRQLQDAAKSKVDS-DTITKLQEQNTDLNNECERLSDSLTK 179

Query:   321 SEKASSPNTIEEIVENVGSLPNQNNKV 347
             S +  + +T++ + +   +L NQN+K+
Sbjct:   180 SRREYN-STLQALQDENYNLENQNSKL 205

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	679
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.002
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.002

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDE 173
             +      L   L+ L  L +  +E   +L+AEL+E +   ++ EL+RE+E+ +   + 
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN--ELEELKREIESLEERLER 415

Query: 174 IVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKEL 233
           +  R+  L++E   L  +L  L        +    +       + L   + EL R   EL
Sbjct: 416 LSERLEDLKEELKELEAELEEL---QTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEAL 271
           Q E + L  + SS+E +L  L     +    +   EAL
Sbjct: 473 QEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEAL 510

Length = 1163

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 471 VPNPPPRPS-CGISGGTKEERQAQIPQPPPLP---RPPPPPPAPKFSG 514
           +P PPP P   GI           IP PPPLP     PPPPP P  +G
Sbjct: 48  IPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAG 95

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 468 VLRVPNPPPRP-SCGISGGTKEERQAQIPQPPPLPR----PPPPPPAP 510
           V  +P PPP P +  I         A IP PPPLP     PPPPPP P
Sbjct: 57  VAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLP 104

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 37/224 (16%)

Query: 126 ELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEK 185
           EL +L + +   ++++  L+  L+  +R  + LE + E    K++       +  LE++ 
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA--EELAELEEKL 346

Query: 186 TSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245
             L E+L +L   LE                   E E+ EL    +EL+ +   L  K +
Sbjct: 347 EELKEELESLEAELEEL-----------------EAELEELESRLEELEEQLETLRSKVA 389

Query: 246 SMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVN 305
            +E Q+ SL              E   L    E L  + E LQ      +++L       
Sbjct: 390 QLELQIASLN------------NEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--- 434

Query: 306 SCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLE 349
                ELQ        E       +E + E +  L  +  +  +
Sbjct: 435 ---LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 25/179 (13%)

Query: 126 ELDSLRSLLQESKEREFKLQAELSEWKRNP-----KVLELERELEAKKIENDEIVRRVGM 180
            L+ L   L+  +E   KL+ E+ E +        ++ ELE ELE  +   D + R +  
Sbjct: 759 RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES 818

Query: 181 LEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNL 240
           LE  +  L +++  L    E   + +  ++              EL    +EL+ E   L
Sbjct: 819 LEQRRERLEQEIEELE---EEIEELEEKLD--------------ELEEELEELEKELEEL 861

Query: 241 ACKFSSMENQLTSLAKASES--DIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE 297
             +   +E +   L    +   +   +++ E   L     +L +++E     RL E+E 
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE-KLRERLEELEA 919

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 21/181 (11%)

Query: 126 ELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEK 185
           E++ L+S L+E +E   +LQ EL E K   + LE E  L  +++E          LE+E 
Sbjct: 268 EIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE---------LENEL 318

Query: 186 TSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC--- 242
             L E+L  L   +E     K  +    +  + LE  + EL    +EL+ +   L     
Sbjct: 319 EELEERLEELKEKIEAL---KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375

Query: 243 -KFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL 301
             F ++  +L  L        +++I+ E   L+   E L +++E L     +  EEL  L
Sbjct: 376 ELFEALREELAELEAE-----LAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430

Query: 302 R 302
            
Sbjct: 431 E 431

Length = 1163

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 471 VPNPPPRPS-CGISGGTKEERQAQIPQPPPLPRP---PPPPPAP 510
           +P PPP P   GI         A IP PPPLP     PPPPP P
Sbjct: 24  IPPPPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLP 67

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 23/58 (39%)

Query: 470 RVPNPPPRPSCGISGGTKEERQAQIPQPPPLPR-----PPPP--------PPAPKFSG 514
            +P PPP P     GG         P PPPLP      PPPP        PP P F G
Sbjct: 83  GIPPPPPLP-----GGA-----GIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPG 130

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	679
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.23
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.27
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.5
PRK11637	428	AmiB activator; Provisional	97.24
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.21
PHA02562	562	46 endonuclease subunit; Provisional	96.92
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.82
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	96.67
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.64
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.62
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.62
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.59
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.58
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.58
PHA02562	562	46 endonuclease subunit; Provisional	96.57
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.55
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.54
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.48
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	96.45
PF11365	96	DUF3166: Protein of unknown function (DUF3166); In	96.3
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.14
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.13
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	96.05
PRK02224	880	chromosome segregation protein; Provisional	96.04
PRK02224	880	chromosome segregation protein; Provisional	95.99
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.92
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.91
PRK03918	880	chromosome segregation protein; Provisional	95.86
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.77
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.76
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.76
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.75
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.63
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.63
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.61
PRK11637	428	AmiB activator; Provisional	95.51
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.47
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.46
PRK03918	880	chromosome segregation protein; Provisional	95.44
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.44
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.42
PLN03188	1320	kinesin-12 family protein; Provisional	95.42
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	95.42
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	95.34
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.32
PHA01732	94	proline-rich protein	95.32
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.32
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.22
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	95.17
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.14
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.04
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.98
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	94.74
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.59
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	94.53
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.32
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	94.27
KOG4673	961	consensus Transcription factor TMF, TATA element m	94.24
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.19
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	94.18
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.12
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.11
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.97
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	93.9
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.87
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.87
PRK09039	343	hypothetical protein; Validated	93.85
KOG0971	1243	consensus Microtubule-associated protein dynactin	93.84
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	93.5
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.42
PRK09039	343	hypothetical protein; Validated	93.31
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	93.31
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.25
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	92.95
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	92.9
PRK04863	1486	mukB cell division protein MukB; Provisional	92.87
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	92.85
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	92.77
KOG0963	629	consensus Transcription factor/CCAAT displacement	92.64
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.62
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.53
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	92.42
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	92.34
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	92.09
PF00038	312	Filament: Intermediate filament protein; InterPro:	91.93
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	91.79
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.75
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	91.7
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	91.56
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	91.5
KOG0933	1174	consensus Structural maintenance of chromosome pro	91.48
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	91.47
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.38
PRK04778	569	septation ring formation regulator EzrA; Provision	91.27
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.26
PF06548	488	Kinesin-related: Kinesin-related; InterPro: IPR010	91.24
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	91.06
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	90.95
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.93
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.89
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	90.66
KOG0933	1174	consensus Structural maintenance of chromosome pro	90.62
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	90.59
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.57
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	90.44
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.35
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	90.28
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	90.27
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	90.23
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	90.23
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	90.23
PRK04863	1486	mukB cell division protein MukB; Provisional	90.22
PF10186	302	Atg14: UV radiation resistance protein and autopha	90.15
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.01
KOG1937	521	consensus Uncharacterized conserved protein [Funct	89.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	89.89
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	89.81
PRK04778	569	septation ring formation regulator EzrA; Provision	89.79
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	89.69
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	89.59
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.57
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	89.47
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	89.4
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	89.36
PRK01156	895	chromosome segregation protein; Provisional	89.32
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	89.31
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	89.31
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	89.23
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	88.99
KOG0979	1072	consensus Structural maintenance of chromosome pro	88.92
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	88.76
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.69
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	88.66
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	88.56
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.45
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	88.33
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	88.13
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	88.06
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	88.05
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	87.7
PF15195	116	TMEM210: TMEM210 family	87.47
PRK01156	895	chromosome segregation protein; Provisional	87.4
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	87.29
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.0
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.88
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	86.78
COG5185	622	HEC1 Protein involved in chromosome segregation, i	86.7
KOG0018	1141	consensus Structural maintenance of chromosome pro	86.65
KOG0963	629	consensus Transcription factor/CCAAT displacement	86.61
PRK10884	206	SH3 domain-containing protein; Provisional	86.58
PHA03211	461	serine/threonine kinase US3; Provisional	86.57
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	86.5
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.45
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	86.32
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	86.08
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	86.08
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.02
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	85.83
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	85.6
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	85.55
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	85.49
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.27
PHA03247	3151	large tegument protein UL36; Provisional	85.19
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	85.17
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	85.1
PRK10929	1109	putative mechanosensitive channel protein; Provisi	85.04
KOG4001	259	consensus Axonemal dynein light chain [Cytoskeleto	84.8
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.69
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	84.63
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	84.56
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.35
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	84.14
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	84.04
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	83.96
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	83.79
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	83.74
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	83.62
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	83.55
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	83.41
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	83.21
KOG0249	916	consensus LAR-interacting protein and related prot	82.94
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	82.84
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	82.82
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	82.79
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	82.68
PRK10698	222	phage shock protein PspA; Provisional	82.64
PRK09343	121	prefoldin subunit beta; Provisional	82.5
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	82.25
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	82.17
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	82.1
PRK10884	206	SH3 domain-containing protein; Provisional	81.96
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	81.89
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	81.85
COG4942	420	Membrane-bound metallopeptidase [Cell division and	81.8
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	81.53
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	81.47
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	81.42
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	81.37
KOG0979	1072	consensus Structural maintenance of chromosome pro	81.01
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	80.73
KOG1003	205	consensus Actin filament-coating protein tropomyos	80.33
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	80.02

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.23  E-value=1.3e-11  Score=139.98  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=36.2

Q ss_pred             hcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743          275 HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS  315 (679)
Q Consensus       275 ~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~  315 (679)
                      ..|+.|..|+++|.+|+++|++||++ |+.|  +|.|++++
T Consensus       347 i~n~~ldvqlkvfdE~~e~Dl~el~~-rled--ir~emDd~  384 (1102)
T KOG1924|consen  347 INNDILDVQLKVFDEHKEDDLEELSG-RLED--IRAEMDDA  384 (1102)
T ss_pred             hccHHHHHHHHHHhhhhhhhHHHHHh-HHHh--hhhhhccH
Confidence            48999999999999999999999999 9999  88999988

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.27  E-value=8.9e-07  Score=101.81  Aligned_cols=33  Identities=27%  Similarity=0.262  Sum_probs=17.6

Q ss_pred             hhhhhhhhhHhhhccCcCCCCCcHHHHHHHHHhh
Q 005743          643 FGYRDLKKLESEVSYYKDDPRVPCDLALKKMVSL  676 (679)
Q Consensus       643 ~lY~~L~~l~~e~s~f~d~p~~pc~~aL~km~sl  676 (679)
                      .+-..++.|+..+.+|+..+ .--+...-||-++
T Consensus       905 ~m~~~ik~Le~dlk~~~~~~-~e~dkF~ekM~~F  937 (1102)
T KOG1924|consen  905 QMENQIKKLERDLKNFKIAG-NEHDKFVEKMTSF  937 (1102)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-cchhhHHHHhhHH
Confidence            34455666777777776542 2234445555444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.50  E-value=0.005  Score=72.20  Aligned_cols=127  Identities=20%  Similarity=0.290  Sum_probs=97.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELSEW---------------KRNPK----VLELERELEAKKIENDEIVRRVGMLE  182 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy---------------KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLE  182 (679)
                      -++.||.+||.-++.....|..|..++.-+               +|.|.    +.+|.+..+.....+-.|.+++...+
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999998888888888775544               22222    45555555566667888899999999


Q ss_pred             HHhhhHHHHHHHHHHHHHHHhhhhhhh---------h--c-cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          183 DEKTSLSEQLAALSVILERKNDNKNAI---------N--M-GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       183 aE~~rLq~qv~e~~~~~~Q~ee~~k~d---------~--e-~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      .....|+.|+.+-.+.+.++++...+-         +  | ..++.++||.|+..||+..+..+++++.|...+....
T Consensus       502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr  579 (697)
T PF09726_consen  502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR  579 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888888776654442         1  1 1378899999999999999999999999888775443

; GO: 0016021 integral to membrane

>PRK11637 AmiB activator; Provisional

Probab=97.24  E-value=0.036  Score=60.95  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=36.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      +...+|+.++..+..++.+-..++.++.+.    ...+. |..++.+|.....+|..++.+|..|+.+...+++++..
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~  121 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA  121 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666655555555555544444    11112 44444444444445555555555555554444444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.21  E-value=0.014  Score=58.96  Aligned_cols=122  Identities=25%  Similarity=0.337  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV  197 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~  197 (679)
                      +..|++.|+..+.+|++.-.+|..+.... +||-.    |..||.+...-.++.+.|+.++..|..++..|+-||-++-.
T Consensus        65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~  144 (193)
T PF14662_consen   65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES  144 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            47899999999999999999999888888 77766    77888888888889999999999999999999999987777


Q ss_pred             HHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743          198 ILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM  247 (679)
Q Consensus       198 ~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA  247 (679)
                      +.-|....+-   +....+.+|..=|+|.|.++-+|-.+++.|-..|..+
T Consensus       145 l~~~~da~l~---e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~  191 (193)
T PF14662_consen  145 LICQRDAILS---ERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM  191 (193)
T ss_pred             HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7665432211   1247788999999999999999999999998888554

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.92  E-value=0.11  Score=58.01  Aligned_cols=48  Identities=21%  Similarity=0.241  Sum_probs=27.4

Q ss_pred             HHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHH--HHHHHHHHHhhhh
Q 005743          265 KIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYL--RWVNSCLRDELQN  314 (679)
Q Consensus       265 ~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvyl--RwiNacLR~EL~d  314 (679)
                      ..+..+..+......|..+++.|+..-....++|-.+  +|.+  ++.+..+
T Consensus       348 ~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~--~~~~~~~  397 (562)
T PHA02562        348 TNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK--IVKTKSE  397 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH--HHHHHHH
Confidence            3445555556666677777777766655555555533  6665  4444433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.82  E-value=0.059  Score=57.94  Aligned_cols=143  Identities=16%  Similarity=0.254  Sum_probs=102.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhchh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743          120 SRDLFLELDSLRSLLQESKEREFKLQAELSEW-------KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE  190 (679)
Q Consensus       120 ~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-------KEQE~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~  190 (679)
                      ......-++.|+..++.|++.-..|..|...+       .|+|.  |.+-=+||...+.+|..|...|+.-..++.+.|+
T Consensus       155 ~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQE  234 (306)
T PF04849_consen  155 SSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQE  234 (306)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            33445678999999999999999998877666       44444  7788888888888999999988888888888888


Q ss_pred             HHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHH
Q 005743          191 QLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEA  270 (679)
Q Consensus       191 qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~  270 (679)
                      +|..+..-.-          +.+.+++.+-.|-+||+.....-..--+.|+..|...+.+++.+.     .|...+++|+
T Consensus       235 EIt~Llsqiv----------dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~-----~mL~EaQEEl  299 (306)
T PF04849_consen  235 EITSLLSQIV----------DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECM-----AMLHEAQEEL  299 (306)
T ss_pred             HHHHHHHHHH----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            8877653221          235666777777777776665555555555555555555554332     2556778999


Q ss_pred             HHhhhcC
Q 005743          271 LVLRHTN  277 (679)
Q Consensus       271 ~~LR~~N  277 (679)
                      ..||..|
T Consensus       300 k~lR~~~  306 (306)
T PF04849_consen  300 KTLRKRT  306 (306)
T ss_pred             HHhhCCC
Confidence            9888764

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=96.67  E-value=0.00089  Score=75.13  Aligned_cols=28  Identities=29%  Similarity=0.473  Sum_probs=16.9

Q ss_pred             CCCCCCCCCCCCCCCCCcccccCCCCCCCCC
Q 005743          470 RVPNPPPRPSCGISGGTKEERQAQIPQPPPL  500 (679)
Q Consensus       470 rvp~PPP~ps~~~~~~~~~~~~~gvpPppP~  500 (679)
                      .+|.|||.|+..+   .++.-.+|||||||-
T Consensus       228 ~~P~~P~~P~~~P---~~~~L~~GvPPPPP~  255 (817)
T KOG1925|consen  228 KEPLIPASPKELP---TRDFLLSGVPPPPPK  255 (817)
T ss_pred             CCCCCCCChhccC---CchhhhcCCCCCCCC
Confidence            4566666555532   335667888887665

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.64  E-value=0.26  Score=58.82  Aligned_cols=26  Identities=35%  Similarity=0.372  Sum_probs=11.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAEL  148 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~EL  148 (679)
                      +..++..++..+..++.+-..++.++
T Consensus       710 l~~~~~~~~~~~~~~~~~~~~~~~~~  735 (1179)
T TIGR02168       710 LEEELEQLRKELEELSRQISALRKDL  735 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455554444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.62  E-value=0.33  Score=57.94  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=14.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAEL  148 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~EL  148 (679)
                      .+..++..++..+..++..-..++.++
T Consensus       688 ~l~~~l~~~~~~~~~~~~~l~~l~~~~  714 (1179)
T TIGR02168       688 ELEEKIAELEKALAELRKELEELEEEL  714 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666655555555544444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.62  E-value=0.44  Score=49.82  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH-HHH
Q 005743          262 IISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-YLR  302 (679)
Q Consensus       262 ~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv-ylR  302 (679)
                      .|..++.+...||........+++.|...+-.-=-|+. |++
T Consensus       263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34456666666666666666666666666655555555 543

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.59  E-value=0.24  Score=61.19  Aligned_cols=88  Identities=23%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhH--HHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEGLQMS  290 (679)
Q Consensus       213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~--~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~  290 (679)
                      +.....+..++.++.....+++.+...|...++..+..+..+....+.-  .+..+.++...++..-+++..+|..+...
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  454 (1163)
T COG1196         375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ  454 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            3445555666666666666666666666666666655554443321110  11233334443444444555555555555


Q ss_pred             hhchHHHHHH
Q 005743          291 RLNEVEELAY  300 (679)
Q Consensus       291 Re~dvEELvy  300 (679)
                      ...-...+..
T Consensus       455 ~~~~~~~~~~  464 (1163)
T COG1196         455 LEELRDRLKE  464 (1163)
T ss_pred             HHHHHHHHHH
Confidence            5444444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.58  E-value=0.11  Score=61.39  Aligned_cols=163  Identities=24%  Similarity=0.313  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---hhchh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH-----------
Q 005743          129 SLRSLLQESKEREFKLQAELSEW---KRNPK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL-----------  192 (679)
Q Consensus       129 ~Lr~~V~eLqERE~kLE~ELlEy---KEQE~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv-----------  192 (679)
                      .|+.-|..|+.+-.-||..+.++   ++++.  +..||++|..+...--.|..++...+...+.-++..           
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r  536 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR  536 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence            34555667777777777777777   66666  999999999888766666666655544433333222           


Q ss_pred             ---HHHHHHHHH--Hhhhhhhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhcc--chhHH
Q 005743          193 ---AALSVILER--KNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA--SESDI  262 (679)
Q Consensus       193 ---~e~~~~~~Q--~ee~~k~d~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~--~Es~~  262 (679)
                         .+.++.+.+  +.|..+...|+   +..+..||.|+.+||..+++=+.+-..|.-=|.++|.+..-|-+.  -|.  
T Consensus       537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEt--  614 (697)
T PF09726_consen  537 QECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAET--  614 (697)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence               222222222  22222222333   578899999999999887666666667777777777655444221  122  


Q ss_pred             HHHHHHH-HHHhhhcChHHHHHHHHHhhh---hhchHHHHH
Q 005743          263 ISKIKAE-ALVLRHTNEDLSKQVEGLQMS---RLNEVEELA  299 (679)
Q Consensus       263 Va~~~eE-~~~LR~~Ne~L~~QlE~l~~~---Re~dvEELv  299 (679)
                        +|+-| ..+|    .+-..|||+++..   |+.+|.||=
T Consensus       615 --riKldLfsaL----g~akrq~ei~~~~~~~~d~ei~~lk  649 (697)
T PF09726_consen  615 --RIKLDLFSAL----GDAKRQLEIAQGQLRKKDKEIEELK  649 (697)
T ss_pred             --HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23332 2333    2556777776655   555555554

; GO: 0016021 integral to membrane

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.58  E-value=0.065  Score=64.60  Aligned_cols=151  Identities=21%  Similarity=0.219  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhh
Q 005743          129 SLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA  208 (679)
Q Consensus       129 ~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~  208 (679)
                      +|.-++..|+.+-++|+.||.|-=|  -+.+|++.|....+|++.|.+.+.-+..+..+...-..+...+++|.+-..  
T Consensus       174 hL~velAdle~kir~LrqElEEK~e--nll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d--  249 (1195)
T KOG4643|consen  174 HLEVELADLEKKIRTLRQELEEKFE--NLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPD--  249 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCC--
Confidence            3444444444555555555544321  177888888888899999999999998888888888888887777533221  


Q ss_pred             hhccchhhhhH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743          209 INMGSSSSQNL---EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE  285 (679)
Q Consensus       209 d~e~e~~l~~L---E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE  285 (679)
                       .--..++.++   -..|+||++-|..|+.+|-=|...|+-.+++-.-+.  -|++|+ +.++..+-||..+.-...|++
T Consensus       250 -~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~t--leseii-qlkqkl~dm~~erdtdr~kte  325 (1195)
T KOG4643|consen  250 -TTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGAT--LESEII-QLKQKLDDMRSERDTDRHKTE  325 (1195)
T ss_pred             -CccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCC--hHHHHH-HHHHHHHHHHHhhhhHHHHHH
Confidence             0011333333   467888888888888888888888888776642211  255555 455555555544444444444


Q ss_pred             HH
Q 005743          286 GL  287 (679)
Q Consensus       286 ~l  287 (679)
                      .|
T Consensus       326 eL  327 (1195)
T KOG4643|consen  326 EL  327 (1195)
T ss_pred             HH
Confidence            33

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.57  E-value=0.2  Score=55.99  Aligned_cols=21  Identities=10%  Similarity=0.162  Sum_probs=10.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREF  142 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~  142 (679)
                      ....+|..|+..+..++.+-.
T Consensus       178 e~~~~i~~l~~~i~~l~~~i~  198 (562)
T PHA02562        178 ELNQQIQTLDMKIDHIQQQIK  198 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555544443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.55  E-value=0.32  Score=58.39  Aligned_cols=27  Identities=26%  Similarity=0.252  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSE  150 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlE  150 (679)
                      ..++..+...+..+++.-..++.++.+
T Consensus       250 ~~~~~~l~~~l~~~~~~~~~~~~~~~~  276 (1164)
T TIGR02169       250 EEELEKLTEEISELEKRLEEIEQLLEE  276 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.54  E-value=0.41  Score=57.49  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=19.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743          121 RDLFLELDSLRSLLQESKEREFKLQAELSE  150 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlE  150 (679)
                      ..+..++..++..+..+++....++.++.+
T Consensus       254 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (1164)
T TIGR02169       254 EKLTEEISELEKRLEEIEQLLEELNKKIKD  283 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445666777777666666666666665555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.48  E-value=0.27  Score=56.66  Aligned_cols=41  Identities=22%  Similarity=0.195  Sum_probs=27.0

Q ss_pred             hcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743          275 HTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS  315 (679)
Q Consensus       275 ~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~  315 (679)
                      +..+-|.+++-.+-.-|+--+.||...|+-++.|+.=|.+.
T Consensus       304 q~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~  344 (546)
T PF07888_consen  304 QEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADA  344 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33445556666666777778888887788777776545444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=96.45  E-value=0.0026  Score=74.27  Aligned_cols=37  Identities=16%  Similarity=0.139  Sum_probs=24.4

Q ss_pred             hhhhhhhHHHHHhhc---CCCccchhHHHHHHhhhhhhhhhHh
Q 005743          614 ELGFLVDERAVLKHF---DWPEKKADTLREAAFGYRDLKKLES  653 (679)
Q Consensus       614 eLs~LsDEraVLk~F---~wPEkK~dalReAA~lY~~L~~l~~  653 (679)
                      .++.|++|+.++..|   +..+.|+..|   .++|.-++++.-
T Consensus       503 pme~Ls~edkFml~lskIErle~klatM---~~m~nF~dsv~l  542 (830)
T KOG1923|consen  503 PMENLSEEDKFMLSLSKIERLEEKLATM---EFMGNFPDSVQL  542 (830)
T ss_pred             chhhcccchhhhhhhhhhhhhHHHHHHH---HHHHhchhhhhh
Confidence            467788888887777   5666676665   455655555543

>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function

Probab=96.30  E-value=0.014  Score=53.35  Aligned_cols=82  Identities=24%  Similarity=0.227  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhh---------hhhhccchhhhhHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNK---------NAINMGSSSSQNLEMEVVELR  227 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~---------k~d~e~e~~l~~LE~EV~ELR  227 (679)
                      ..||++||+....|...|.++|+-|+.+|+.|..++..|..--.......         -+...++..++-.+.++.+|.
T Consensus         3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls   82 (96)
T PF11365_consen    3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELS   82 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999998876433211011         111234577899999999999


Q ss_pred             HHHHHHHHHHH
Q 005743          228 RLNKELQMEKR  238 (679)
Q Consensus       228 R~NkeLQ~EKr  238 (679)
                      +...+||.|||
T Consensus        83 ~kv~eLq~ENR   93 (96)
T PF11365_consen   83 GKVMELQYENR   93 (96)
T ss_pred             hHHHHHhhccc
Confidence            99999999998

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.14  E-value=0.79  Score=46.48  Aligned_cols=111  Identities=21%  Similarity=0.197  Sum_probs=79.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER  201 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q  201 (679)
                      ++=.-|..|+.-|.+++.++...+..+.+.                ..|..-|..-+..++.+...|+.++..|.+-+..
T Consensus        24 ~NL~lIksLKeei~emkk~e~~~~k~m~ei----------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~   87 (201)
T PF13851_consen   24 NNLELIKSLKEEIAEMKKKEERNEKLMAEI----------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS   87 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667888888888888888777766665                3344556666666677777777777766655443


Q ss_pred             HhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          202 KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       202 ~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      -..+..+-...++.+++|+.|-.-|......|+.|+.+|..|+..+=
T Consensus        88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i  134 (201)
T PF13851_consen   88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAI  134 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333445788889999999999999999999999999988773

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.13  E-value=0.0085  Score=70.05  Aligned_cols=169  Identities=22%  Similarity=0.271  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHH------
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ------  191 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~q------  191 (679)
                      ...++..|+..+..|+.....|..++.++    +.+.. +..||+|+.+...|++.|+..+.++..+.......      
T Consensus       362 ~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~  441 (722)
T PF05557_consen  362 LQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQR  441 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHH
Confidence            46777778888888888878888888888    33444 88999999999999999999999988877665432      


Q ss_pred             ---HHHHHHHHHH------------Hhhh-------hhhhhcc-----------------chhhhhHHHHHHHHHHHHHH
Q 005743          192 ---LAALSVILER------------KNDN-------KNAINMG-----------------SSSSQNLEMEVVELRRLNKE  232 (679)
Q Consensus       192 ---v~e~~~~~~Q------------~ee~-------~k~d~e~-----------------e~~l~~LE~EV~ELRR~Nke  232 (679)
                         +.++.....+            +++.       .....++                 ...+..|..++.+|++.+..
T Consensus       442 ~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~  521 (722)
T PF05557_consen  442 IKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENER  521 (722)
T ss_dssp             ----------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence               1111100000            0000       0000000                 13455566677777777777


Q ss_pred             HHHHHHhhhhhhhh---------hHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhh
Q 005743          233 LQMEKRNLACKFSS---------MENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR  291 (679)
Q Consensus       233 LQ~EKreL~~KL~s---------Ae~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~R  291 (679)
                      |+.++..|..+|..         ...+|=.+..-+.++.....+..+..||.+|++|..+|..+....
T Consensus       522 L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~  589 (722)
T PF05557_consen  522 LRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGN  589 (722)
T ss_dssp             HHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            77777777766664         111222222224444444457999999999999999997776443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=96.05  E-value=0.0074  Score=67.04  Aligned_cols=15  Identities=7%  Similarity=0.091  Sum_probs=11.5

Q ss_pred             hhHHHHHHHhhcccc
Q 005743          525 PQVVEFYHSLMKRDS  539 (679)
Q Consensus       525 P~vvefY~SL~~re~  539 (679)
                      ..+..+|..|..-||
T Consensus       262 ~~~~AlFaqlNqGe~  276 (480)
T KOG2675|consen  262 GGRGALFAQLNQGEG  276 (480)
T ss_pred             ccHHHHHHHHhccch
Confidence            567789999887654

>PRK02224 chromosome segregation protein; Provisional

Probab=96.04  E-value=0.67  Score=55.10  Aligned_cols=80  Identities=13%  Similarity=0.150  Sum_probs=45.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN  293 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~  293 (679)
                      ..+.+++.++.+|+....+|+..+.++..+|.....++..+...-..+....+.+++..++..=+.+...++.+...+..
T Consensus       599 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~  678 (880)
T PRK02224        599 AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD  678 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666554322223334455666665555555555555555544444

>PRK02224 chromosome segregation protein; Provisional

Probab=95.99  E-value=0.52  Score=55.97  Aligned_cols=7  Identities=43%  Similarity=0.733  Sum_probs=3.0

Q ss_pred             CcCCCCC
Q 005743          658 YKDDPRV  664 (679)
Q Consensus       658 f~d~p~~  664 (679)
                      +-|+|..
T Consensus       816 ilDEp~~  822 (880)
T PRK02224        816 ILDEPTV  822 (880)
T ss_pred             EecCCcc
Confidence            3444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.92  E-value=1.3  Score=46.61  Aligned_cols=130  Identities=22%  Similarity=0.244  Sum_probs=85.8

Q ss_pred             HHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH----H-Hhhhhhhhhcc-chhhhhHHHHHHHHHHHHHHHHH
Q 005743          162 RELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE----R-KNDNKNAINMG-SSSSQNLEMEVVELRRLNKELQM  235 (679)
Q Consensus       162 rqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~----Q-~ee~~k~d~e~-e~~l~~LE~EV~ELRR~NkeLQ~  235 (679)
                      +.+.....+++.|+.+|..++.+.+.+.+++........    + +-.++..+..+ ..+...||.|+.+|......|+.
T Consensus        45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~  124 (239)
T COG1579          45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK  124 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344456666666666666666666665554332222    1 23344444444 48899999999999999999999


Q ss_pred             HHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743          236 EKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA  299 (679)
Q Consensus       236 EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv  299 (679)
                      +.-+|..++...+..++....        .+.+++..+|.....+..|.+.|-..=..++-.+.
T Consensus       125 ~i~~l~~~~~~~e~~~~e~~~--------~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~y  180 (239)
T COG1579         125 EIEDLKERLERLEKNLAEAEA--------RLEEEVAEIREEGQELSSKREELKEKLDPELLSEY  180 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999999988765443        44556666666666777777777666555554444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.91  E-value=1.1  Score=50.25  Aligned_cols=158  Identities=18%  Similarity=0.242  Sum_probs=90.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH-------HH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL-------AA  194 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv-------~e  194 (679)
                      ...||..+...|..-+.+..+|+.+|.+   +|. |..+..+|..-.+.+..+.+.|+-++...+.|+.|-       ++
T Consensus        43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~---~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~  119 (420)
T COG4942          43 IQKEIAALEKKIREQQDQRAKLEKQLKS---LETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAE  119 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999888865   445 566666666666666666666666665555555544       22


Q ss_pred             HHHHHHH------------Hhhhhhhh----------hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743          195 LSVILER------------KNDNKNAI----------NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT  252 (679)
Q Consensus       195 ~~~~~~Q------------~ee~~k~d----------~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~  252 (679)
                      +..+.-+            .+++...+          .++.+.+..|.....+|...-..+.-|+.+|...+..--.+  
T Consensus       120 ~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q--  197 (420)
T COG4942         120 QLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ--  197 (420)
T ss_pred             HHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            2222221            12221111          12235566666666666666666666666655443322111  


Q ss_pred             hhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743          253 SLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA  299 (679)
Q Consensus       253 ~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv  299 (679)
                                    ++....++.+...+..+++.-...+..-.+||-
T Consensus       198 --------------~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~  230 (420)
T COG4942         198 --------------QAKLAQLLEERKKTLAQLNSELSADQKKLEELR  230 (420)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          233444455555666666666655555555554

>PRK03918 chromosome segregation protein; Provisional

Probab=95.86  E-value=0.66  Score=54.92  Aligned_cols=79  Identities=24%  Similarity=0.258  Sum_probs=48.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~  200 (679)
                      .+..-.+.++..++.++.+-..|+..+..+.+.+. +.+++.++.....++..+..++..|+.+...++.++..+....+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~  238 (880)
T PRK03918        159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE  238 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666667777777777776666644444 66666666666666666666666666666666655554444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.77  E-value=1.1  Score=58.41  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=19.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELSEW  151 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy  151 (679)
                      .++.++..+...+...+++...|+.+..+.
T Consensus       905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~  934 (1930)
T KOG0161|consen  905 ELEKELKELKERLEEEEEKNAELERKKRKL  934 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666677777777777666666655544

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.76  E-value=1.2  Score=53.60  Aligned_cols=99  Identities=18%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743          211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS  290 (679)
Q Consensus       211 e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~  290 (679)
                      +++....+|..-++++.|.-.++.---++....|++.+..+..+.-     -++.++.....+++..-..+.|++.+...
T Consensus       463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~-----e~~~lq~~~~~~~qs~~~~~~~l~~~l~~  537 (980)
T KOG0980|consen  463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLI-----ELEELQRTLSNLAQSHNNQLAQLEDLLKQ  537 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            3456666777777777777777666666777777777765544322     24456677777777777889999999999


Q ss_pred             hhchHHHHHHHHHHHHHHHHhhhh
Q 005743          291 RLNEVEELAYLRWVNSCLRDELQN  314 (679)
Q Consensus       291 Re~dvEELvylRwiNacLR~EL~d  314 (679)
                      |+..+.+++..+-.-+-+|.|+.+
T Consensus       538 KD~~~~~~~~~~~e~~~~~~e~e~  561 (980)
T KOG0980|consen  538 KDRLAAELVAREEEREALRLEAER  561 (980)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999754212226666644

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.76  E-value=0.69  Score=53.40  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLS  189 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq  189 (679)
                      |.+|+.+|.....+...|..+...+....+.|.
T Consensus       173 v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~  205 (546)
T PF07888_consen  173 VERLEAELEQEEEEMEQLKQQQKELTESSEELK  205 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555544444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.75  E-value=0.6  Score=57.72  Aligned_cols=85  Identities=19%  Similarity=0.158  Sum_probs=52.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhh--ccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhh
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLA--KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSR  291 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~--~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~R  291 (679)
                      ..++.++-++.+|...+..||..+..|......-++-+....  ...-+++++.+++++..|-..++.+..++..++..|
T Consensus       574 ~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~  653 (1317)
T KOG0612|consen  574 KQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELK  653 (1317)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            445555557777888888888777666554333322221111  112355788899999999888888887777666655


Q ss_pred             hchHHHH
Q 005743          292 LNEVEEL  298 (679)
Q Consensus       292 e~dvEEL  298 (679)
                      ....+.+
T Consensus       654 r~~~e~~  660 (1317)
T KOG0612|consen  654 RENQERI  660 (1317)
T ss_pred             HHHHHHH
Confidence            4444433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.63  E-value=1.5  Score=46.94  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=18.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELS  149 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELl  149 (679)
                      ++..++..|+..+..|+.+...|+.++.
T Consensus        78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~  105 (423)
T TIGR01843        78 DVEADAAELESQVLRLEAEVARLRAEAD  105 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4566777777777777766666665544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.63  E-value=0.49  Score=54.55  Aligned_cols=72  Identities=28%  Similarity=0.329  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh------hhchh------HHHHHHHHHHhHhHHHHHHHHHhhhH
Q 005743          122 DLFLELDSLRSLLQES-------KEREFKLQAELSEW------KRNPK------VLELERELEAKKIENDEIVRRVGMLE  182 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eL-------qERE~kLE~ELlEy------KEQE~------I~ELqrqL~~k~~Ei~~Lk~kI~sLE  182 (679)
                      -++.||..++..|.+-       +..-.+|+.|+.+|      ++++.      +.+....|....+++..++..|..|+
T Consensus        89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le  168 (546)
T KOG0977|consen   89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE  168 (546)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence            3466666666666544       33444555566666      21122      45555666666677777777777777


Q ss_pred             HHhhhHHHHHH
Q 005743          183 DEKTSLSEQLA  193 (679)
Q Consensus       183 aE~~rLq~qv~  193 (679)
                      .+..+|..+..
T Consensus       169 ~e~~~Lk~en~  179 (546)
T KOG0977|consen  169 DELKRLKAENS  179 (546)
T ss_pred             HHHHHHHHHhh
Confidence            77776665553

>TIGR00606 rad50 rad50

Probab=95.61  E-value=0.58  Score=58.64  Aligned_cols=99  Identities=18%  Similarity=0.154  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-------HHhhhhhhhhccchhhhhHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE-------RKNDNKNAINMGSSSSQNLEMEVVELRRL  229 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~-------Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~  229 (679)
                      +.+|+.++.....+++.|...+..++.+...++.++.++-.-..       +-.+.......++..+.+|..++.+++..
T Consensus       824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~  903 (1311)
T TIGR00606       824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE  903 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888999988888888888888887777621111       11112222334456666666666666666


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHhhhhh
Q 005743          230 NKELQMEKRNLACKFSSMENQLTSLA  255 (679)
Q Consensus       230 NkeLQ~EKreL~~KL~sAe~~~~~~~  255 (679)
                      .+++..+-..|..+++.++.....+.
T Consensus       904 ~~~~~~~~~~~~~~~~~~~~~~~~~~  929 (1311)
T TIGR00606       904 IKDAKEQDSPLETFLEKDQQEKEELI  929 (1311)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            66666666666666666666554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK11637 AmiB activator; Provisional

Probab=95.51  E-value=2.9  Score=46.33  Aligned_cols=79  Identities=15%  Similarity=0.223  Sum_probs=66.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-K---RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-K---EQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~  195 (679)
                      ..+..+|..+...+..++.+...++.++..+ +   ..+. |.+++.+|.....+|..+..+|..++.+...+++.+...
T Consensus        50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637         50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568899999999999999999999999888 3   3333 999999999999999999999999999999988888765


Q ss_pred             HHHH
Q 005743          196 SVIL  199 (679)
Q Consensus       196 ~~~~  199 (679)
                      ....
T Consensus       130 lra~  133 (428)
T PRK11637        130 LDAA  133 (428)
T ss_pred             HHHH
Confidence            5433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.47  E-value=1.6  Score=54.21  Aligned_cols=37  Identities=19%  Similarity=0.265  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHH
Q 005743          264 SKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAY  300 (679)
Q Consensus       264 a~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvy  300 (679)
                      ..+..++..++..=++|..++..+.......-.+...
T Consensus       873 ~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  909 (1163)
T COG1196         873 EELEDELKELEEEKEELEEELRELESELAELKEEIEK  909 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666677776666665555554443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.46  E-value=0.98  Score=42.63  Aligned_cols=115  Identities=21%  Similarity=0.257  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhH-------hHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKK-------IENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~-------~Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      +..||..|+..+..+..+...+..++...   -. ..+.|...+.+.       .+|..|+..+..++.+...|+..+..
T Consensus         8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q---~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~   84 (132)
T PF07926_consen    8 LQSELQRLKEQEEDAEEQLQSLREDLESQ---AKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAES   84 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433332   22 334433333222       24445555555555555555444433


Q ss_pred             HHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005743          195 LSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS  246 (679)
Q Consensus       195 ~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s  246 (679)
                      ......+.+..      .+..-..|+.|+.++.+...+|..||.=|--+|++
T Consensus        85 a~~~l~~~e~s------w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   85 AKAELEESEAS------WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333222211      23445778999999999999999999988887765

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK03918 chromosome segregation protein; Provisional

Probab=95.44  E-value=1.2  Score=52.89  Aligned_cols=71  Identities=17%  Similarity=0.242  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q 005743          129 SLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVIL  199 (679)
Q Consensus       129 ~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~  199 (679)
                      .+......+.+....++.++..+..+-. +.+++.+|.....++..+...+..++.+...+++++.......
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l  230 (880)
T PRK03918        159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV  230 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555533323 5555555555555566666666666666666666665554433

>TIGR00606 rad50 rad50

Probab=95.44  E-value=1.4  Score=55.50  Aligned_cols=36  Identities=11%  Similarity=0.151  Sum_probs=15.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743          216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (679)
Q Consensus       216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~  251 (679)
                      +.+++.++.++.....+|+.+...+..++...+..+
T Consensus       972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel 1007 (1311)
T TIGR00606       972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.42  E-value=1.3  Score=57.52  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~  251 (679)
                      .++.++..++..|.+..++||-++.+|...|+.-....
T Consensus      1083 ~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r 1120 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASR 1120 (1930)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666666666666665554433

>PLN03188 kinesin-12 family protein; Provisional

Probab=95.42  E-value=0.71  Score=57.45  Aligned_cols=79  Identities=27%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743          220 EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA  299 (679)
Q Consensus       220 E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv  299 (679)
                      |-|..=||..|+.||.|.|+-+.-..+|=..+-.|-...|..-||  ++-+...-++|+.+-+||+.|...++.++.-|=
T Consensus      1172 eker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a--~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~ 1249 (1320)
T PLN03188       1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVA--QKRAMDAEQEAAEAYKQIDKLKRKHENEISTLN 1249 (1320)
T ss_pred             HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666699999999864433333333333332222333333  666677778888999999999999988877665


Q ss_pred             H
Q 005743          300 Y  300 (679)
Q Consensus       300 y  300 (679)
                      +
T Consensus      1250 q 1250 (1320)
T PLN03188       1250 Q 1250 (1320)
T ss_pred             H
Confidence            4

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=95.42  E-value=0.0044  Score=66.50  Aligned_cols=15  Identities=7%  Similarity=0.237  Sum_probs=0.0

Q ss_pred             chhHHHHHHHhhccc
Q 005743          524 APQVVEFYHSLMKRD  538 (679)
Q Consensus       524 aP~vvefY~SL~~re  538 (679)
                      ++.+..+|--|.+-+
T Consensus       259 ~~~~~AlFaeLN~G~  273 (312)
T PF01213_consen  259 SGGMSALFAELNQGE  273 (312)
T ss_dssp             ---------------
T ss_pred             cccHHHHHHHHhccC
Confidence            678889999987653

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=95.34  E-value=0.013  Score=73.87  Aligned_cols=11  Identities=18%  Similarity=0.359  Sum_probs=6.6

Q ss_pred             HHHHhhccccC
Q 005743          530 FYHSLMKRDSR  540 (679)
Q Consensus       530 fY~SL~~re~~  540 (679)
                      |.++|..|.|.
T Consensus      1745 fl~TLHDR~Ge 1755 (2039)
T PRK15319       1745 QMQTLYDREGS 1755 (2039)
T ss_pred             hcccHHHcCCc
Confidence            55666667554

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.32  E-value=1.3  Score=51.38  Aligned_cols=124  Identities=23%  Similarity=0.209  Sum_probs=61.4

Q ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHhh-----hhchhHHH-HHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743          124 FLELDSLRSL-------LQESKEREFKLQAELSEW-----KRNPKVLE-LERELEAKKIENDEIVRRVGMLEDEKTSLSE  190 (679)
Q Consensus       124 ~~EI~~Lr~~-------V~eLqERE~kLE~ELlEy-----KEQE~I~E-LqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~  190 (679)
                      ..||..|...       |+.|+.+-.+|+.++-.+     ++-..|.. .+..|.....-|+.-....+.++-+..+|++
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~  120 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE  120 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4567666654       577777777887777666     33222221 1122222223334444444445555555555


Q ss_pred             HHHHHHHHHHHHhh-h------------h--hhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743          191 QLAALSVILERKND-N------------K--NAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM  247 (679)
Q Consensus       191 qv~e~~~~~~Q~ee-~------------~--k~d~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA  247 (679)
                      ++.++..-....+. +            .  ..+.++   ..+++.||.|+..|++.|.+|..+...+...|++.
T Consensus       121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E  195 (546)
T KOG0977|consen  121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE  195 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            55554433332111 0            0  111122   25566666666666666666666666655555544

>PHA01732 proline-rich protein

Probab=95.32  E-value=0.039  Score=49.67  Aligned_cols=13  Identities=23%  Similarity=0.176  Sum_probs=6.6

Q ss_pred             cchhHHHHHHHhh
Q 005743          523 RAPQVVEFYHSLM  535 (679)
Q Consensus       523 RaP~vvefY~SL~  535 (679)
                      -+|.|.+---.+.
T Consensus        43 ~apki~~~~skrg   55 (94)
T PHA01732         43 EAPKIREAQSKRG   55 (94)
T ss_pred             chhHHHHHHHHHH
Confidence            4566665444333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.32  E-value=1  Score=43.50  Aligned_cols=96  Identities=28%  Similarity=0.265  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E  236 (679)
                      +++|+.++...-.+|.-|..++..|+.+-..+++++.+.-...+........-..+..+++-||.++.+.....++....
T Consensus        23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ek  102 (143)
T PF12718_consen   23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEK  102 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555567777777777788777777777777665555322111111123466666676666666666666666


Q ss_pred             HHhhhhhhhhhHHHhh
Q 005743          237 KRNLACKFSSMENQLT  252 (679)
Q Consensus       237 KreL~~KL~sAe~~~~  252 (679)
                      .++.-++.+..+-++.
T Consensus       103 l~e~d~~ae~~eRkv~  118 (143)
T PF12718_consen  103 LREADVKAEHFERKVK  118 (143)
T ss_pred             HHHHHHHhHHHHHHHH
Confidence            6665555555554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.22  E-value=1  Score=49.00  Aligned_cols=76  Identities=22%  Similarity=0.213  Sum_probs=58.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEW---------------KRNPK----VLELERELEAKKIENDEIVRRVGMLED  183 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy---------------KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEa  183 (679)
                      ...|-+.++.|++.|++|-..|.....++               +++..    +.+...+...-..|++.|.+++.-++-
T Consensus        21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG  100 (319)
T PF09789_consen   21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG  100 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46799999999999999988888755444               13333    556666666666799999999999999


Q ss_pred             HhhhHHHHHHHHHHH
Q 005743          184 EKTSLSEQLAALSVI  198 (679)
Q Consensus       184 E~~rLq~qv~e~~~~  198 (679)
                      +++-|.++++.....
T Consensus       101 D~KlLR~~la~~r~~  115 (319)
T PF09789_consen  101 DIKLLREKLARQRVG  115 (319)
T ss_pred             hHHHHHHHHHhhhhh
Confidence            999999888876443

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=95.17  E-value=0.025  Score=66.44  Aligned_cols=45  Identities=29%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             ccccccccccccchhccccc-----CCCC-----CCCCCCccccccccCCCCcch
Q 005743           79 NSIVASHSRVKRSLIGDLAC-----SMNP-----AQVHPNSYQTHRRQSSGSRDL  123 (679)
Q Consensus        79 n~~~~~~~r~~~~l~~dl~~-----~~~~-----~~~~~~~~~~~r~~~~~~~~~  123 (679)
                      |++...+.|.+-++.|.|.+     |+.+     +|+-.+.++..|||.+.|.-+
T Consensus        26 ~S~~~~n~rtktsvl~~lasic~v~gg~E~~~~a~~~f~~v~qe~~rf~~lm~~~   80 (830)
T KOG1923|consen   26 NSSKHTNLRTKTSVLGSLASICYVIGGSEQSWPAAPVFSKVNQEPRRFNTLMYVH   80 (830)
T ss_pred             HhhccCCcchHHHHHHHHHHHHHHhcCceeecccCcchhhhhcCccccccccccc
Confidence            77778888888888777765     2211     333344455777777766544

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.14  E-value=2.3  Score=46.19  Aligned_cols=115  Identities=16%  Similarity=0.225  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH---Hhhhhhhh--hc---cchhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILER---KNDNKNAI--NM---GSSSSQNLEMEVVELRRLNKELQMEKRNLA  241 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q---~ee~~k~d--~e---~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~  241 (679)
                      .++.|..++..||.||..|..++..+..-..+   ++..+-.|  .+   ....+..|..|++.-..-+.+.|.|...|.
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll  240 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL  240 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999888744442   22222222  22   236677777777777777777777777777


Q ss_pred             hhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743          242 CKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM  289 (679)
Q Consensus       242 ~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~  289 (679)
                      -++-..|.++-.+.  .|++..   ..-...-+.....|..++..|++
T Consensus       241 sqivdlQ~r~k~~~--~EnEeL---~q~L~~ske~Q~~L~aEL~elqd  283 (306)
T PF04849_consen  241 SQIVDLQQRCKQLA--AENEEL---QQHLQASKESQRQLQAELQELQD  283 (306)
T ss_pred             HHHHHHHHHHHHHh--hhHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766554432  243322   22222333444455555555543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.04  E-value=2.2  Score=44.79  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=9.8

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      |...|...+..++.+...|..++++
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~  114 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAE  114 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444433333333333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.98  E-value=1.3  Score=48.07  Aligned_cols=143  Identities=22%  Similarity=0.221  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhh-
Q 005743          128 DSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNK-  206 (679)
Q Consensus       128 ~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~-  206 (679)
                      +.|+..|.+|+..-..|                       ..+++.++.+...|+.+++.|.+..+.+....+|++|.. 
T Consensus        23 ~~l~~~~~sL~qen~~L-----------------------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is   79 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVL-----------------------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS   79 (310)
T ss_pred             HHHHHHHHHHHHHhHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777654444                       456777888888999999999988888888888877742 


Q ss_pred             ----hhhhcc--------chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-hhhhhccc---hhHHHHHHHHHH
Q 005743          207 ----NAINMG--------SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ-LTSLAKAS---ESDIISKIKAEA  270 (679)
Q Consensus       207 ----k~d~e~--------e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~-~~~~~~~~---Es~~Va~~~eE~  270 (679)
                          |+-..+        ..-.++=|.-...|-|...+|+.||-+|...|..=+.. +..|..-.   +.+.+ ....+.
T Consensus        80 N~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~-~~q~~l  158 (310)
T PF09755_consen   80 NTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS-AKQEEL  158 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHH
Confidence                221111        13334445667788999999999999999999885522 22222110   11221 233445


Q ss_pred             HHhhhcChHHHHHHHHHhhhhhchHHHHHHH
Q 005743          271 LVLRHTNEDLSKQVEGLQMSRLNEVEELAYL  301 (679)
Q Consensus       271 ~~LR~~Ne~L~~QlE~l~~~Re~dvEELvyl  301 (679)
                      ..||.+--+|-..||+       +.|-||..
T Consensus       159 e~Lr~EKVdlEn~LE~-------EQE~lvN~  182 (310)
T PF09755_consen  159 ERLRREKVDLENTLEQ-------EQEALVNR  182 (310)
T ss_pred             HHHHHHHHhHHHHHHH-------HHHHHHHH
Confidence            5666655555555554       44556654

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=94.74  E-value=0.1  Score=54.80  Aligned_cols=25  Identities=32%  Similarity=0.333  Sum_probs=16.8

Q ss_pred             ccchhhhhhccCCCCCccccCCCCC
Q 005743          381 VLDKTWVQLEEGRSPRRRHSISGSN  405 (679)
Q Consensus       381 ~~~~~~~~~~~~~sp~r~~~~~~~~  405 (679)
                      |-|=.||-..++.+-.|..+.-.++
T Consensus        56 lADv~wva~de~~~~~r~R~~~~~~   80 (253)
T PF05308_consen   56 LADVLWVANDEEESYARFRSEVRPN   80 (253)
T ss_pred             hhhhcceecccccccceeecccccc
Confidence            6678888888888777665443333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.59  E-value=1.8  Score=53.30  Aligned_cols=156  Identities=19%  Similarity=0.249  Sum_probs=106.0

Q ss_pred             HHHHHHHHHhh-hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH----HHHHHH----HHhhhhhhh--
Q 005743          141 EFKLQAELSEW-KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA----LSVILE----RKNDNKNAI--  209 (679)
Q Consensus       141 E~kLE~ELlEy-KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e----~~~~~~----Q~ee~~k~d--  209 (679)
                      +..|.....+. +-||.+.+|+..++.+-..+..+.+++...|++...+.+.+-.    +..+++    ...++..-+  
T Consensus       280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~  359 (1074)
T KOG0250|consen  280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE  359 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444 5566677888888888888888888888888887777655532    222222    011111112  


Q ss_pred             -hccchhhhhHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743          210 -NMGSSSSQNLEMEVVELRRLNKELQMEK-RNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL  287 (679)
Q Consensus       210 -~e~e~~l~~LE~EV~ELRR~NkeLQ~EK-reL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l  287 (679)
                       .+++..++++-.++..|++....++.+- .++..+++..|..+..|..     -|+++++..+.||.+-.++...+..-
T Consensus       360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~-----evek~e~~~~~L~~e~~~~~~~~~~~  434 (1074)
T KOG0250|consen  360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKK-----EVEKLEEQINSLREELNEVKEKAKEE  434 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             2335778888888888999888888887 8888888888888877655     25577888888888777888777777


Q ss_pred             hhhhhchHHHHHHH
Q 005743          288 QMSRLNEVEELAYL  301 (679)
Q Consensus       288 ~~~Re~dvEELvyl  301 (679)
                      ++.++.--.++..+
T Consensus       435 ~ee~~~i~~~i~~l  448 (1074)
T KOG0250|consen  435 EEEKEHIEGEILQL  448 (1074)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77776666666654

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.53  E-value=3  Score=47.18  Aligned_cols=110  Identities=24%  Similarity=0.223  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhh---------hhhh---------hccchhh-------hhHHHHH
Q 005743          169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDN---------KNAI---------NMGSSSS-------QNLEMEV  223 (679)
Q Consensus       169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~---------~k~d---------~e~e~~l-------~~LE~EV  223 (679)
                      -++..|..+|-.|+.++.+|...++.+-....+..+.         ..++         ..+.++|       ..-+-=+
T Consensus       297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELi  376 (502)
T KOG0982|consen  297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELI  376 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4889999999999999999999988877666531110         0000         0011111       1222235


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743          224 VELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM  289 (679)
Q Consensus       224 ~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~  289 (679)
                      +|||+....||+.|-+++.---           ..++.-+..+..|...||+.|-.|..|=+.++.
T Consensus       377 eelrkelehlr~~kl~~a~p~r-----------grsSaRe~eleqevkrLrq~nr~l~eqneelng  431 (502)
T KOG0982|consen  377 EELRKELEHLRRRKLVLANPVR-----------GRSSAREIELEQEVKRLRQPNRILSEQNEELNG  431 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhcccc-----------CchhHHHHHHHHHHHHhccccchhhhhhhhhhh
Confidence            6777777777776666541100           122333345667777787777777777665554

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.32  E-value=3.4  Score=51.01  Aligned_cols=100  Identities=20%  Similarity=0.253  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH----HHHHHH----hhhhhhhhccc---hhhhhHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS----VILERK----NDNKNAINMGS---SSSQNLEMEVVE  225 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~----~~~~Q~----ee~~k~d~e~e---~~l~~LE~EV~E  225 (679)
                      |-+-++||.....+|.....++..|+.+.+..+..+.++.    .+.+|.    .+.-.+|.|++   +.+.++--|+.+
T Consensus       276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~  355 (1074)
T KOG0250|consen  276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND  355 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555666666666666666666555555443    111111    11122233332   555555555555


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhhhhc
Q 005743          226 LRRLNKELQMEKRNLACKFSSMENQLTSLAK  256 (679)
Q Consensus       226 LRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~  256 (679)
                      +.-.-.+-+-.-+.+...++..+.+|+-+.+
T Consensus       356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~  386 (1074)
T KOG0250|consen  356 LKEEIREIENSIRKLKKEVDRLEKQIADLEK  386 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555566666666555554433

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=94.27  E-value=0.062  Score=60.82  Aligned_cols=33  Identities=15%  Similarity=0.025  Sum_probs=19.0

Q ss_pred             cchhHHHHhhcCCCccccccccccchhccchhh
Q 005743          354 RRLSFIKKFKKWPIASEEMSNLECQDNVLDKTW  386 (679)
Q Consensus       354 Kk~~li~KLKkW~~~ked~~~~~~~~~~~~~~~  386 (679)
                      .+.+...++||=-.++.|.++-..+-.+-.-.|
T Consensus       218 d~~~~~~~~kksk~tk~disaPtnf~h~~hVgw  250 (569)
T KOG3671|consen  218 DENKSGVYDKKSKITKADISAPTNFPHIPHVGW  250 (569)
T ss_pred             hhhcccccccccccccccCCCCCCCccccccCC
Confidence            334444477777788888776554432333344

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=94.24  E-value=1.9  Score=50.98  Aligned_cols=61  Identities=21%  Similarity=0.225  Sum_probs=38.8

Q ss_pred             hhhhhHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHH
Q 005743          214 SSSQNLEMEVVELRRLN-----------KELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSK  282 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~N-----------keLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~  282 (679)
                      .+-..|-..|.+||.+.           ..+-+|+++|-+||++||-+..               +-+..+-.+-.-|+.
T Consensus       580 ~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~e---------------el~q~v~~TTrPLlR  644 (961)
T KOG4673|consen  580 ERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCE---------------ELIQQVPETTRPLLR  644 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhhccccccHHHH
Confidence            33445555566666443           4566788899999999885542               333344455567888


Q ss_pred             HHHHHhh
Q 005743          283 QVEGLQM  289 (679)
Q Consensus       283 QlE~l~~  289 (679)
                      |||-|+.
T Consensus       645 QIE~lQ~  651 (961)
T KOG4673|consen  645 QIEALQE  651 (961)
T ss_pred             HHHHHHH
Confidence            8887764

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.19  E-value=0.46  Score=47.35  Aligned_cols=33  Identities=30%  Similarity=0.354  Sum_probs=17.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      +.+|+.++.|+.+.+..|+.|.--|-..+..+|
T Consensus       132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e  164 (194)
T PF08614_consen  132 IKDLEEELKEKNKANEILQDELQALQLQLNMLE  164 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555554444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=94.18  E-value=0.072  Score=60.33  Aligned_cols=11  Identities=18%  Similarity=0.519  Sum_probs=5.2

Q ss_pred             hhhhhhHHhhh
Q 005743          556 NVRSSMIGEIE  566 (679)
Q Consensus       556 ~~r~~migEi~  566 (679)
                      ++|.++++-|-
T Consensus       493 dgR~~LmaqIR  503 (569)
T KOG3671|consen  493 DGRDALMAQIR  503 (569)
T ss_pred             ccHHHHHHHHH
Confidence            34545544443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.12  E-value=5.2  Score=48.85  Aligned_cols=72  Identities=19%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL  287 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l  287 (679)
                      +..+.+-.|++-++-.+.+|.-.+..|..+++.||+.|.-+..-.+..+.|  ++=.+.|-..|=.|.+.|+.|
T Consensus       396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGA--E~MV~qLtdknlnlEekVklL  467 (1243)
T KOG0971|consen  396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGA--EEMVEQLTDKNLNLEEKVKLL  467 (1243)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH--HHHHHHHHhhccCHHHHHHHH
Confidence            444555555555666666677777778888888888777665444433333  333344444444444444433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.11  E-value=1.7  Score=51.09  Aligned_cols=79  Identities=24%  Similarity=0.286  Sum_probs=44.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQ---AELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS  196 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE---~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~  196 (679)
                      .+..|+..|+.-+..|.++=...-   ..|... .+++. +.||++.|+....+......-++.|++++....-.|++..
T Consensus        84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~  163 (617)
T PF15070_consen   84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR  163 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence            355677777777766665433221   233333 67777 8888888877665554455555566655544444444433


Q ss_pred             HHHH
Q 005743          197 VILE  200 (679)
Q Consensus       197 ~~~~  200 (679)
                      .++.
T Consensus       164 eLK~  167 (617)
T PF15070_consen  164 ELKE  167 (617)
T ss_pred             HHHH
Confidence            3333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.97  E-value=3.2  Score=42.44  Aligned_cols=83  Identities=25%  Similarity=0.292  Sum_probs=63.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----hchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-K-----RNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-K-----EQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      .|....|..++..+..+++....|+.++.+. .     ....+.+++.++.....++..|+..|..+..+.+..++.+.+
T Consensus        16 ~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~   95 (302)
T PF10186_consen   16 NCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE   95 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556679999999999999999999988887 3     333377888888888888888888888888888777777777


Q ss_pred             HHHHHHHHh
Q 005743          195 LSVILERKN  203 (679)
Q Consensus       195 ~~~~~~Q~e  203 (679)
                      ......+..
T Consensus        96 ~~~~l~~~~  104 (302)
T PF10186_consen   96 LRESLEQRR  104 (302)
T ss_pred             HHHHHHHHH
Confidence            665555433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.90  E-value=3.5  Score=39.92  Aligned_cols=42  Identities=14%  Similarity=0.283  Sum_probs=35.7

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743          212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS  253 (679)
Q Consensus       212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~  253 (679)
                      ...++++.++.+.++-|..+.|+.+...+-.|++..+.++..
T Consensus        99 ~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~  140 (143)
T PF12718_consen   99 TTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE  140 (143)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            347788888999999999999999999999999888877654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.87  E-value=3.9  Score=50.90  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=45.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhc
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLN  293 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~  293 (679)
                      ..+.+||-++..++...+.|-.+-..+..+..--+..+..    +++.+. .+++++..++..=+++.+++..|..+|-+
T Consensus       942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e----~~~~~~-E~k~~~~~~k~~~e~i~k~~~~lk~~rId 1016 (1293)
T KOG0996|consen  942 KKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKE----AEESLK-EIKKELRDLKSELENIKKSENELKAERID 1016 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3444455555555544444444444444444433333322    233333 67888888888888888888888887766


Q ss_pred             hHHHHH
Q 005743          294 EVEELA  299 (679)
Q Consensus       294 dvEELv  299 (679)
                       ++-.+
T Consensus      1017 -~~~K~ 1021 (1293)
T KOG0996|consen 1017 -IENKL 1021 (1293)
T ss_pred             -HHHHH
Confidence             44333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.87  E-value=9.9  Score=44.69  Aligned_cols=37  Identities=22%  Similarity=0.307  Sum_probs=26.7

Q ss_pred             HHHHHHHHhhhcChHHHHHHHHHh---hhhhchHHHHHHH
Q 005743          265 KIKAEALVLRHTNEDLSKQVEGLQ---MSRLNEVEELAYL  301 (679)
Q Consensus       265 ~~~eE~~~LR~~Ne~L~~QlE~l~---~~Re~dvEELvyl  301 (679)
                      |=++|+++.-.....|.++++.+.   ..=|+-++|+||.
T Consensus       502 KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifr  541 (594)
T PF05667_consen  502 KQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFR  541 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            445677766666668888887765   4557888999985

>PRK09039 hypothetical protein; Validated

Probab=93.85  E-value=1.8  Score=47.25  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRV  178 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI  178 (679)
                      |.+|+.++.....+-..|....
T Consensus        83 l~~l~~~l~~a~~~r~~Le~~~  104 (343)
T PRK09039         83 VANLRASLSAAEAERSRLQALL  104 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555554444333343333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.84  E-value=3.3  Score=50.46  Aligned_cols=35  Identities=26%  Similarity=0.243  Sum_probs=23.4

Q ss_pred             hhhhccchhhhhHHHHHHHH---HHHHHHHHHHHHhhh
Q 005743          207 NAINMGSSSSQNLEMEVVEL---RRLNKELQMEKRNLA  241 (679)
Q Consensus       207 k~d~e~e~~l~~LE~EV~EL---RR~NkeLQ~EKreL~  241 (679)
                      .+..++|.+++.||.+|.+|   +..|.+|++-+++|.
T Consensus       455 dknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele  492 (1243)
T KOG0971|consen  455 DKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELE  492 (1243)
T ss_pred             hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44466788999999887654   555666666665543

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=93.50  E-value=2.4  Score=48.72  Aligned_cols=71  Identities=14%  Similarity=0.084  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSEW---------KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy---------KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      ..-.++|+..+..++++-..|..+...|         +||-.+-.+.++|.--++++..+...|.++-.++.+++++...
T Consensus       158 ~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~sk  237 (596)
T KOG4360|consen  158 RELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSK  237 (596)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3557899999999999988888877777         4444455666666665555555555555544444444444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.42  E-value=3.8  Score=41.96  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=11.4

Q ss_pred             hHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743          169 IENDEIVRRVGMLEDEKTSLSEQLA  193 (679)
Q Consensus       169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~  193 (679)
                      .|...|++.|..++..+.+|.+.+.
T Consensus        22 ~en~kL~~~ve~~ee~na~L~~e~~   46 (193)
T PF14662_consen   22 DENAKLQRSVETAEEGNAQLAEEIT   46 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444443

>PRK09039 hypothetical protein; Validated

Probab=93.31  E-value=9.4  Score=41.74  Aligned_cols=82  Identities=12%  Similarity=0.052  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      .+|..|..++..++++..+|+.+.+.......   ++..+-...+..+..+..+..|.++....|+.|...|..+|.+.|
T Consensus        81 ~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~---~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le  157 (343)
T PRK09039         81 DSVANLRASLSAAEAERSRLQALLAELAGAGA---AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE  157 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666777777777776653221100   000111112355555566666666666666666666666666666


Q ss_pred             HHhhh
Q 005743          249 NQLTS  253 (679)
Q Consensus       249 ~~~~~  253 (679)
                      +.|..
T Consensus       158 ~~L~~  162 (343)
T PRK09039        158 AALDA  162 (343)
T ss_pred             HHHHH
Confidence            55544

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=93.31  E-value=2.5  Score=43.20  Aligned_cols=111  Identities=21%  Similarity=0.165  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-hh--HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSEWKRN-PK--VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQ-E~--I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~  200 (679)
                      ..=|+.....+.-+.-|..+|+. |..|... =.  ...|+..+..-..++..++.+|..+..+.+..|.++..-....+
T Consensus       103 ~~al~na~a~lehq~~R~~NLeL-l~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le  181 (221)
T PF05700_consen  103 KEALDNAYAQLEHQRLRLENLEL-LSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLE  181 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45577777777888888888865 4455332 22  66777777777778888888888888888888888776555444


Q ss_pred             H-HhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHH
Q 005743          201 R-KNDNKNAINMGSSSSQNLEMEVVELRRLNKELQM  235 (679)
Q Consensus       201 Q-~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~  235 (679)
                      + =.+...+-.+++..+..||.||.+||+.-.+++.
T Consensus       182 ~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~  217 (221)
T PF05700_consen  182 QRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE  217 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3 3555555566778888888888888877666654

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.25  E-value=7.8  Score=39.90  Aligned_cols=12  Identities=17%  Similarity=0.304  Sum_probs=6.6

Q ss_pred             HHHHHHHhhhhh
Q 005743          304 VNSCLRDELQNS  315 (679)
Q Consensus       304 iNacLR~EL~d~  315 (679)
                      -..|++.||+..
T Consensus       219 ~~~~~~~eld~~  230 (237)
T PF00261_consen  219 KYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            334566666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=92.95  E-value=6.1  Score=51.36  Aligned_cols=77  Identities=22%  Similarity=0.220  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchhHH----HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHH
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPKVL----ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVI  198 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~I~----ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~  198 (679)
                      ..|+..|+..+..+.....+|..++... .+++.++    |++.|=......+.-++.+|+.|+.++..|.++++.....
T Consensus        79 ~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~  158 (1822)
T KOG4674|consen   79 RNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKT  158 (1822)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666666 4555433    3333333333455666667888888888888888765544


Q ss_pred             HH
Q 005743          199 LE  200 (679)
Q Consensus       199 ~~  200 (679)
                      ..
T Consensus       159 ~~  160 (1822)
T KOG4674|consen  159 LS  160 (1822)
T ss_pred             HH
Confidence            33

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=92.90  E-value=3.1  Score=42.78  Aligned_cols=146  Identities=21%  Similarity=0.160  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-H-------Hhhhhhhhhcc---chhhhhHHHHHHHH
Q 005743          158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE-R-------KNDNKNAINMG---SSSSQNLEMEVVEL  226 (679)
Q Consensus       158 ~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~-Q-------~ee~~k~d~e~---e~~l~~LE~EV~EL  226 (679)
                      +|.|..+..+..||--|+-.+..+.++.+....++.++..... +       +.+.-....++   ...+..||.|+.+|
T Consensus        20 ke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~L   99 (202)
T PF06818_consen   20 KESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAEL   99 (202)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHH
Confidence            3444444455555555665555555555555555554433222 1       11111122222   37899999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhhhh----ccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH-HH
Q 005743          227 RRLNKELQMEKRNLACKFSSMENQLTSLA----KASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA-YL  301 (679)
Q Consensus       227 RR~NkeLQ~EKreL~~KL~sAe~~~~~~~----~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv-yl  301 (679)
                      |.....+...+.+...-..+-++.+....    -.+--..|..+++|...+|..+++-...|+.-+--|..+=+-.+ |.
T Consensus       100 r~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQ  179 (202)
T PF06818_consen  100 REELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQ  179 (202)
T ss_pred             HHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988874333333322222222111110    00112246688899999999999988888888888888888887 65


Q ss_pred             HH
Q 005743          302 RW  303 (679)
Q Consensus       302 Rw  303 (679)
                      +=
T Consensus       180 kQ  181 (202)
T PF06818_consen  180 KQ  181 (202)
T ss_pred             HH
Confidence            43

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.87  E-value=4.6  Score=51.89  Aligned_cols=42  Identities=10%  Similarity=0.003  Sum_probs=24.0

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743          212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS  253 (679)
Q Consensus       212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~  253 (679)
                      ++..+.+++..+.+++....+|+.+...+...++..+...+.
T Consensus       440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~  481 (1486)
T PRK04863        440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL  481 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666666666666666666666655555555544443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=92.85  E-value=9.8  Score=41.15  Aligned_cols=145  Identities=23%  Similarity=0.292  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhchh------HHHHHHHHHHhHhHHHHHHH-------HHhhhHHHhhhHHHHHHH
Q 005743          128 DSLRSLLQESKEREFKLQAELSEWKRNPK------VLELERELEAKKIENDEIVR-------RVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       128 ~~Lr~~V~eLqERE~kLE~ELlEyKEQE~------I~ELqrqL~~k~~Ei~~Lk~-------kI~sLEaE~~rLq~qv~e  194 (679)
                      +.|+..+.-.+.||..++..+-. +++|.      +......+.........++.       +|..|......|+.|+.-
T Consensus       142 eKlK~l~eQye~rE~~~~~~~k~-keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~  220 (309)
T PF09728_consen  142 EKLKSLIEQYELREEHFEKLLKQ-KELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNL  220 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666667776666554322 33333      33334444445556666666       899999999999999998


Q ss_pred             HHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhh
Q 005743          195 LSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR  274 (679)
Q Consensus       195 ~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR  274 (679)
                      |..=-.+-+.++..-   ...-..+-.|+..|...++.|+.|+..+..|-+.+...+..            +-+|...+.
T Consensus       221 Y~~Kf~efq~tL~kS---Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~------------m~eer~~~~  285 (309)
T PF09728_consen  221 YSEKFEEFQDTLNKS---NEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIE------------MAEERQKLE  285 (309)
T ss_pred             HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------------HHHHHHHHH
Confidence            876555444443222   24455677889999999999999999999999988654422            224444444


Q ss_pred             hcChHHHHHHHHHh
Q 005743          275 HTNEDLSKQVEGLQ  288 (679)
Q Consensus       275 ~~Ne~L~~QlE~l~  288 (679)
                      ..-+.+..|++.|+
T Consensus       286 ~~~~~~~~k~~kLe  299 (309)
T PF09728_consen  286 KELEKLKKKIEKLE  299 (309)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44445555555543

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.77  E-value=10  Score=45.14  Aligned_cols=64  Identities=27%  Similarity=0.296  Sum_probs=40.7

Q ss_pred             hhhhhHHHHHH---HHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhh
Q 005743          214 SSSQNLEMEVV---ELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMS  290 (679)
Q Consensus       214 ~~l~~LE~EV~---ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~  290 (679)
                      ..+..+-.|+.   +.++++.-||.|+..|-.+|..++                +++..+-.|--.|++|+..+..+...
T Consensus       258 ~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~----------------~l~~~~~~LELeN~~l~tkL~rwE~~  321 (716)
T KOG4593|consen  258 RALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE----------------KLQSTLLGLELENEDLLTKLQRWERA  321 (716)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------------HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            44444445555   666777778888877777777665                33455555666677777777766655


Q ss_pred             hhc
Q 005743          291 RLN  293 (679)
Q Consensus       291 Re~  293 (679)
                      +..
T Consensus       322 ~~~  324 (716)
T KOG4593|consen  322 DQE  324 (716)
T ss_pred             hhh
Confidence            444

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=92.64  E-value=12  Score=44.10  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=39.8

Q ss_pred             HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh--------hc-cchhhhhHHHHHHHHHHH
Q 005743          159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI--------NM-GSSSSQNLEMEVVELRRL  229 (679)
Q Consensus       159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d--------~e-~e~~l~~LE~EV~ELRR~  229 (679)
                      .|+.+...-+.++..+..+|.+|+.-...-+.++-+...-.. ++-+.+.+        .+ .++++..||-|+..||-.
T Consensus       186 ~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~d-ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q  264 (629)
T KOG0963|consen  186 GLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYD-EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ  264 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444456666777777776666665555544333211 11122222        11 148899999999998864


Q ss_pred             H
Q 005743          230 N  230 (679)
Q Consensus       230 N  230 (679)
                      .
T Consensus       265 l  265 (629)
T KOG0963|consen  265 L  265 (629)
T ss_pred             H
Confidence            3

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.62  E-value=7.3  Score=45.93  Aligned_cols=60  Identities=20%  Similarity=0.259  Sum_probs=35.5

Q ss_pred             HHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhh---hhhchHHHHH
Q 005743          235 MEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQM---SRLNEVEELA  299 (679)
Q Consensus       235 ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~---~Re~dvEELv  299 (679)
                      +-+++|..||...+..+..+.     +-|+--.+|+..|...++.++.++-+...   .-..+-++|.
T Consensus       195 ~~~keL~~kl~~l~~~l~~~~-----e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~  257 (617)
T PF15070_consen  195 HVKKELQKKLGELQEKLHNLK-----EKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELH  257 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555554443322     12322346899999988888888877653   2345666666

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.53  E-value=10  Score=45.28  Aligned_cols=50  Identities=10%  Similarity=0.105  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhh
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNK  206 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~  206 (679)
                      |+.|..+.+....=+..+..+|..|++|.++|..-+.....+.++.+|+.
T Consensus       476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I  525 (961)
T KOG4673|consen  476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETI  525 (961)
T ss_pred             HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            55554444433333667777888888888888877776666666655554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.42  E-value=15  Score=37.91  Aligned_cols=71  Identities=20%  Similarity=0.169  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchH
Q 005743          216 SQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEV  295 (679)
Q Consensus       216 l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dv  295 (679)
                      ++.||+-....=.....++...+.|..+|..|+.++.            .+...+..|-...++|...|......+..--
T Consensus       157 lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae------------~aE~~v~~Le~~id~le~eL~~~k~~~~~~~  224 (237)
T PF00261_consen  157 LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE------------FAERRVKKLEKEIDRLEDELEKEKEKYKKVQ  224 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444555555555554432            3345556566666677777776666555544


Q ss_pred             HHH
Q 005743          296 EEL  298 (679)
Q Consensus       296 EEL  298 (679)
                      .||
T Consensus       225 ~el  227 (237)
T PF00261_consen  225 EEL  227 (237)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=92.34  E-value=20  Score=45.10  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=16.4

Q ss_pred             HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743          159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL  192 (679)
Q Consensus       159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv  192 (679)
                      +++.++.....+++.|.-++..++++-..+...+
T Consensus       356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l  389 (1201)
T PF12128_consen  356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL  389 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444455555555555555444444443

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=92.09  E-value=5.6  Score=40.09  Aligned_cols=170  Identities=21%  Similarity=0.217  Sum_probs=96.2

Q ss_pred             CCCCCccc----cccccCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHH
Q 005743          104 QVHPNSYQ----THRRQSSGSRDLFLELDSLRSLL-QESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDE  173 (679)
Q Consensus       104 ~~~~~~~~----~~r~~~~~~~~~~~EI~~Lr~~V-~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~  173 (679)
                      =+||-.|.    .-..+.+....-..++..|...+ ..|+.+..+- .-+  | -.++-    ..||=||+.+.=.|=-.
T Consensus         8 i~ppr~~~~~~~~~~q~vS~~p~tR~dVi~L~e~Ld~~L~~~~ar~-~gI--cpvr~~ly~~~F~ELIRQVTi~C~ERGl   84 (189)
T PF10211_consen    8 ILPPREWEEDGQLWIQFVSSAPATRQDVIQLQEWLDKMLQQRQARE-TGI--CPVREELYSQCFDELIRQVTIDCPERGL   84 (189)
T ss_pred             hCCchhhhcCCeeeEeeeCCCCCCHHHHHHHHHHHHHHHHHhcCCc-ccc--cHHHHHHHHHHHHHHHHHHHhCcHHHhH
Confidence            35666663    11224444455677888887777 3344332211 111  2 11122    55777777766655444


Q ss_pred             HHHHHhhhHHHhhhHHHHHHHHHHHHHHH-hhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743          174 IVRRVGMLEDEKTSLSEQLAALSVILERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT  252 (679)
Q Consensus       174 Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~-ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~  252 (679)
                      |=.+|-      .+++.-++.|..+.+.. .-+.+.--+.++...+|+.++.+|...+.+|+.+..+|..+++.++....
T Consensus        85 LL~rvr------de~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~  158 (189)
T PF10211_consen   85 LLLRVR------DEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE  158 (189)
T ss_pred             HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444431      11222222222222211 00111111123445788889999999999999999999999999987765


Q ss_pred             hhhccchhHHHHHHHHHHHHhhhcChHHHHHHHH
Q 005743          253 SLAKASESDIISKIKAEALVLRHTNEDLSKQVEG  286 (679)
Q Consensus       253 ~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~  286 (679)
                      .... .+   ..+..+|+..|+..|..|..|++.
T Consensus       159 e~~~-~~---~k~~~~ei~~lk~~~~ql~~~l~~  188 (189)
T PF10211_consen  159 ELRQ-EE---EKKHQEEIDFLKKQNQQLKAQLEQ  188 (189)
T ss_pred             HHHH-HH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4333 12   235579999999999999998875

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=91.93  E-value=5.6  Score=41.70  Aligned_cols=80  Identities=25%  Similarity=0.303  Sum_probs=44.1

Q ss_pred             HHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743          163 ELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC  242 (679)
Q Consensus       163 qL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~  242 (679)
                      +|+.-+..+--+--+|-.||.+|..|+.++..+......         .+...-..++.|+.+||+....+..++..|..
T Consensus         5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~---------~~~~~~~~ye~el~~lr~~id~~~~eka~l~~   75 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGE---------EVSRIKEMYEEELRELRRQIDDLSKEKARLEL   75 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccc---------cCcccccchhhHHHHhHHhhhhHHHHhhHHhh
Confidence            344445566666678889999999999888776554321         11122234555555566665555555555555


Q ss_pred             hhhhhHHHh
Q 005743          243 KFSSMENQL  251 (679)
Q Consensus       243 KL~sAe~~~  251 (679)
                      .++.+...+
T Consensus        76 e~~~l~~e~   84 (312)
T PF00038_consen   76 EIDNLKEEL   84 (312)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhhHHHHH
Confidence            555554443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=91.79  E-value=3.4  Score=42.58  Aligned_cols=72  Identities=29%  Similarity=0.336  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~  195 (679)
                      ..||-.||..++++...-...+.++...    ..... +...+++|+....++..|..+|..|+.+...|.+.++..
T Consensus        30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            4688889998888888888888877777    22222 666778888899999999999999999999999999886

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.75  E-value=16  Score=45.94  Aligned_cols=19  Identities=11%  Similarity=0.078  Sum_probs=12.0

Q ss_pred             CCcchhHHHHhhcCCCccc
Q 005743          352 GGRRLSFIKKFKKWPIASE  370 (679)
Q Consensus       352 ~sKk~~li~KLKkW~~~ke  370 (679)
                      .+|=...|.+||.=|+-+.
T Consensus       599 ~~kVl~al~r~kesG~i~G  617 (1293)
T KOG0996|consen  599 RNKVLDALMRLKESGRIPG  617 (1293)
T ss_pred             hhHHHHHHHHHHHcCCCCc
Confidence            3566677777777665433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=91.70  E-value=25  Score=46.24  Aligned_cols=102  Identities=21%  Similarity=0.154  Sum_probs=48.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHH----hhhhhhhhhHHHhhhhhccchhH--HHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKR----NLACKFSSMENQLTSLAKASESD--IISKIKAEALVLRHTNEDLSKQVEGL  287 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKr----eL~~KL~sAe~~~~~~~~~~Es~--~Va~~~eE~~~LR~~Ne~L~~QlE~l  287 (679)
                      ..+-.||.++.+|+..+-+|..+..    ....++..+-.+++++.+.-++-  +...+..-++.+|....-..+++...
T Consensus       965 ~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a 1044 (1822)
T KOG4674|consen  965 KKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKA 1044 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555544443332    12233444555666655522221  22334444445555555554444444


Q ss_pred             hhhh-------hchHHHHHHHHHHHHHHHHhhhhh
Q 005743          288 QMSR-------LNEVEELAYLRWVNSCLRDELQNS  315 (679)
Q Consensus       288 ~~~R-------e~dvEELvylRwiNacLR~EL~d~  315 (679)
                      +...       .++..+|..+||..+-+..++-.+
T Consensus      1045 ~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~L 1079 (1822)
T KOG4674|consen 1045 QSKYESELVQHADLTQKLIKLREEFAKCNDELLKL 1079 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444       445566666676665545555443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.56  E-value=16  Score=44.25  Aligned_cols=14  Identities=14%  Similarity=0.171  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHH
Q 005743          125 LELDSLRSLLQESK  138 (679)
Q Consensus       125 ~EI~~Lr~~V~eLq  138 (679)
                      .||+.....-++|+
T Consensus       393 keie~rEaar~ElE  406 (1118)
T KOG1029|consen  393 KEIERREAAREELE  406 (1118)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55655555555553

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=91.50  E-value=15  Score=46.24  Aligned_cols=77  Identities=23%  Similarity=0.368  Sum_probs=45.7

Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      |..+...+..+|..+...+..++++...+|.+|..+  +..|.+++.++.....++.-....+..|+.+...++.++.+
T Consensus       598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  674 (1201)
T PF12128_consen  598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI--NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEE  674 (1201)
T ss_pred             hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            444445677888888888888888888888777665  11144444444444444444455555555555555544443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.48  E-value=31  Score=42.98  Aligned_cols=125  Identities=20%  Similarity=0.248  Sum_probs=74.8

Q ss_pred             CCCccccc----cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhchh-HHHHHHHHHHhHhHHHHHHHH
Q 005743          106 HPNSYQTH----RRQSSGSRDLFLELDSLRSLLQESKEREFKLQA---ELSEWKRNPK-VLELERELEAKKIENDEIVRR  177 (679)
Q Consensus       106 ~~~~~~~~----r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~---ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~k  177 (679)
                      .+|.|+.+    ..+.+..++.-.+|..|.....+|+.....|+.   +|...+-+-. ...|+.||..+.-++.++...
T Consensus       651 ~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r  730 (1174)
T KOG0933|consen  651 EGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKR  730 (1174)
T ss_pred             cCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677622    234455567778888888887777776666553   4444333333 889999999999888877766


Q ss_pred             Hh------------hhHHHhhhHHHHHHHHHHHHHHHhhh-hhhhh-------ccchhhhhHHHHHHHHHHHH
Q 005743          178 VG------------MLEDEKTSLSEQLAALSVILERKNDN-KNAIN-------MGSSSSQNLEMEVVELRRLN  230 (679)
Q Consensus       178 I~------------sLEaE~~rLq~qv~e~~~~~~Q~ee~-~k~d~-------e~e~~l~~LE~EV~ELRR~N  230 (679)
                      +.            .+..+-+.++.++.+...+.++.++. ..++.       +-+.++++|+.|+..+.+.+
T Consensus       731 ~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~  803 (1174)
T KOG0933|consen  731 LEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA  803 (1174)
T ss_pred             HhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence            53            34444445555555555555543332 22222       22467777777666555443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=91.47  E-value=10  Score=47.06  Aligned_cols=36  Identities=25%  Similarity=0.220  Sum_probs=28.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~  249 (679)
                      +....+..-..+||+.+..-|.....|..||+....
T Consensus       525 ~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~  560 (1041)
T KOG0243|consen  525 KSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDR  560 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            444455555889999999999999999999988763

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.38  E-value=11  Score=40.39  Aligned_cols=111  Identities=22%  Similarity=0.274  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH-------HHhhhhh
Q 005743          135 QESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE-------RKNDNKN  207 (679)
Q Consensus       135 ~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~-------Q~ee~~k  207 (679)
                      -.++.+-..+..||-|++|=  -+|++.+|.   .|++-|+.+..-|++++++|.-++...---.+       |.+.++.
T Consensus        23 ~~ykq~f~~~reEl~EFQeg--SrE~Eaele---sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le   97 (333)
T KOG1853|consen   23 HEYKQHFLQMREELNEFQEG--SREIEAELE---SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE   97 (333)
T ss_pred             HHHHHHHHHHHHHHHHHhhh--hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777788877322  233333332   34555666666677777777644432111000       1222222


Q ss_pred             hhhc-cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743          208 AINM-GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ  250 (679)
Q Consensus       208 ~d~e-~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~  250 (679)
                      .|.- .-.....|-.-|.||-.+|..|+--||.-..-|+.-+++
T Consensus        98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr  141 (333)
T KOG1853|consen   98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR  141 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH
Confidence            2210 012233445566777777777777777544444444433

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.27  E-value=10  Score=43.95  Aligned_cols=9  Identities=11%  Similarity=0.291  Sum_probs=4.9

Q ss_pred             cCCcccccc
Q 005743          324 ASSPNTIEE  332 (679)
Q Consensus       324 ~lSpkS~ek  332 (679)
                      ...|.+.++
T Consensus       548 ~vePG~~~r  556 (569)
T PRK04778        548 KVEPGVTKR  556 (569)
T ss_pred             hhCCcHHHH
Confidence            355666544

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.26  E-value=2.7  Score=45.33  Aligned_cols=31  Identities=32%  Similarity=0.262  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743          221 MEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (679)
Q Consensus       221 ~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~  251 (679)
                      .+-.+.-+....++.+..++...+++.+.++
T Consensus        92 ~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~  122 (314)
T PF04111_consen   92 EEEEEYWREYNELQLELIEFQEERDSLKNQY  122 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444455555555555555555555444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants

Probab=91.24  E-value=29  Score=39.86  Aligned_cols=79  Identities=27%  Similarity=0.289  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHH
Q 005743          219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEEL  298 (679)
Q Consensus       219 LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEEL  298 (679)
                      -|-|..=||..|+.||.|.|+-+.-..+|=-.+-.|-...|...||  ++-+....++|+.+-+||+.|...+..++.-|
T Consensus       401 rEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a--~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~  478 (488)
T PF06548_consen  401 REKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVA--QERAMDAEQENEKAKKQIEKLKRKHKMEISTM  478 (488)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555667999999998864444444433333333323443343  67777778888899999999999988877665


Q ss_pred             H
Q 005743          299 A  299 (679)
Q Consensus       299 v  299 (679)
                      -
T Consensus       479 k  479 (488)
T PF06548_consen  479 K  479 (488)
T ss_pred             H
Confidence            5

Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=91.06  E-value=0.064  Score=62.85  Aligned_cols=43  Identities=30%  Similarity=0.368  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELE  165 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~  165 (679)
                      ...++..|+..++.|+++-.+++..+.+|    .+++. |.+|+.+..
T Consensus       237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~  284 (713)
T PF05622_consen  237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENE  284 (713)
T ss_dssp             ------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667777777777666677666666    33444 555554443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.95  E-value=16  Score=44.31  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743          215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (679)
Q Consensus       215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~  249 (679)
                      .+..|-.++.|+...+-.|--|+.+|--+|...++
T Consensus       487 ei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~  521 (1118)
T KOG1029|consen  487 EIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS  521 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence            34556666677777777777788888888877664

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.93  E-value=1.5  Score=43.71  Aligned_cols=81  Identities=25%  Similarity=0.292  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E  236 (679)
                      +.+|+..+.....+|..|...+..|+.+...|.+.+.+..+....          +..-+-.|-.+..-|...+..|+.|
T Consensus       104 l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----------l~DE~~~L~l~~~~~e~k~~~l~~E  173 (194)
T PF08614_consen  104 LQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI----------LQDELQALQLQLNMLEEKLRKLEEE  173 (194)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555555555555555555555444431          1233455556777778888899999


Q ss_pred             HHhhhhhhhhh
Q 005743          237 KRNLACKFSSM  247 (679)
Q Consensus       237 KreL~~KL~sA  247 (679)
                      |++|..|+=.-
T Consensus       174 n~~Lv~Rwm~~  184 (194)
T PF08614_consen  174 NRELVERWMQR  184 (194)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.89  E-value=5.9  Score=42.67  Aligned_cols=142  Identities=20%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHH----HHHHHHHhHhHHHHHHHHHhhhH----HHhhhHHHHHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLE----LERELEAKKIENDEIVRRVGMLE----DEKTSLSEQLA  193 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~E----LqrqL~~k~~Ei~~Lk~kI~sLE----aE~~rLq~qv~  193 (679)
                      |+=-...|..+...|++.-..|+.+...+.+... +.+    |......-..++..|+..+..++    .+-+.|+++++
T Consensus       140 YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~  219 (325)
T PF08317_consen  140 YEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELA  219 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHH
Confidence            4445666777777777777777766666522222 222    22222222223333333332222    22222333332


Q ss_pred             HHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHh
Q 005743          194 ALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVL  273 (679)
Q Consensus       194 e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~L  273 (679)
                      +.....+          .....+.+|+.++.+++....++..++.++...+..++.........|..++. .+++++..|
T Consensus       220 ~~~~~i~----------~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~-~Lk~~~~~L  288 (325)
T PF08317_consen  220 EQKEEIE----------AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK-RLKAKVDAL  288 (325)
T ss_pred             HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHH
Confidence            2221111          01223344444444444444444444444444444555444444455565544 788887776


Q ss_pred             hh
Q 005743          274 RH  275 (679)
Q Consensus       274 R~  275 (679)
                      -.
T Consensus       289 e~  290 (325)
T PF08317_consen  289 EK  290 (325)
T ss_pred             HH
Confidence            54

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=90.66  E-value=11  Score=45.52  Aligned_cols=134  Identities=18%  Similarity=0.233  Sum_probs=76.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhchhHHHHHHHHHHhHh-------HHHHHHHHHhhhH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELSEW------------KRNPKVLELERELEAKKI-------ENDEIVRRVGMLE  182 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy------------KEQE~I~ELqrqL~~k~~-------Ei~~Lk~kI~sLE  182 (679)
                      |+..=|+.|+..+...+.+...|+.++..+            |-+..|..++..+..-..       .++.-..+|+-|+
T Consensus       319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq  398 (775)
T PF10174_consen  319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ  398 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            447889999999999999999999877555            222224445544443333       3344445556666


Q ss_pred             HHhhhHHHHHHHHHHHHHH--------------------Hhhhh-hhh------------h--ccchhhhhHHHHHHHHH
Q 005743          183 DEKTSLSEQLAALSVILER--------------------KNDNK-NAI------------N--MGSSSSQNLEMEVVELR  227 (679)
Q Consensus       183 aE~~rLq~qv~e~~~~~~Q--------------------~ee~~-k~d------------~--e~e~~l~~LE~EV~ELR  227 (679)
                      .....|++++.+-..-...                    -+++. ..+            .  +-...+..+..|+.+|+
T Consensus       399 ~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk  478 (775)
T PF10174_consen  399 KKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK  478 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655566555443221110                    01110 000            0  11144566667777777


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhhhh
Q 005743          228 RLNKELQMEKRNLACKFSSMENQLTSLA  255 (679)
Q Consensus       228 R~NkeLQ~EKreL~~KL~sAe~~~~~~~  255 (679)
                      ..+..||-+..+....|..+...++.+.
T Consensus       479 ~~~~~LQ~eLsEk~~~l~~~kee~s~l~  506 (775)
T PF10174_consen  479 AKLESLQKELSEKELQLEDAKEEASKLA  506 (775)
T ss_pred             HHHHHHhhhhHHHHHHHHHhhhHHHHHh
Confidence            7777777777777777777766555543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.62  E-value=20  Score=44.47  Aligned_cols=15  Identities=27%  Similarity=0.424  Sum_probs=6.1

Q ss_pred             HHHHHHHHHhhhhhc
Q 005743          279 DLSKQVEGLQMSRLN  293 (679)
Q Consensus       279 ~L~~QlE~l~~~Re~  293 (679)
                      .|..++..+..+..+
T Consensus       910 kle~e~~~~~~e~~~  924 (1174)
T KOG0933|consen  910 KLEHEVTKLESEKAN  924 (1174)
T ss_pred             HHHhHHHHhhhhHHH
Confidence            333444444444433

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=90.59  E-value=20  Score=35.82  Aligned_cols=193  Identities=17%  Similarity=0.213  Sum_probs=90.2

Q ss_pred             CCCCCCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhchh-HHHHHHHHHHhHhHHH
Q 005743          103 AQVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW---------KRNPK-VLELERELEAKKIEND  172 (679)
Q Consensus       103 ~~~~~~~~~~~r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy---------KEQE~-I~ELqrqL~~k~~Ei~  172 (679)
                      +.-+++.|...+.|.   ..++..|..|...+..+-.+...|-..+.+|         -|.+. +..+=.++..-...+.
T Consensus        19 ~~e~D~~F~~~~~~~---~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~   95 (236)
T PF09325_consen   19 MKEPDEWFEEIKDYV---DKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKIS   95 (236)
T ss_pred             CCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHH
Confidence            333344555433343   3456667777777777777777777777776         12221 2222222221111111


Q ss_pred             HHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743          173 EIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT  252 (679)
Q Consensus       173 ~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~  252 (679)
                      .+-.  ..-..+...|.+-+.+|.....--+++..+-..+...+..++.++.--|.....|......=..|++.++..+.
T Consensus        96 ~~~~--~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~  173 (236)
T PF09325_consen   96 ELLE--EQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIE  173 (236)
T ss_pred             HHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            1111  11233344455666666655543222221111111112222222222222222222221111344555554443


Q ss_pred             hhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 005743          253 SLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLR  309 (679)
Q Consensus       253 ~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR  309 (679)
                      .+..     -+..++.++.   ..++.+..+++.|+..|..||-..+. .|++..+.
T Consensus       174 ~~~~-----~~~~~~~~~~---~is~~~k~E~~rf~~~k~~d~k~~l~-~~~~~~i~  221 (236)
T PF09325_consen  174 EAER-----RVEQAKDEFE---EISENIKKELERFEKEKVKDFKSMLE-EYAESQIE  221 (236)
T ss_pred             HHHH-----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3221     2334455555   33567889999999999999999886 66665443

This is the C-terminal dimerisation domain [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.57  E-value=22  Score=38.41  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh-hcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAI-NMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFS  245 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d-~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~  245 (679)
                      .+..+..-+..|.+....|..++..+..+..   +...+| .++   ...+.++..++.++|+...+|+.+...+..+++
T Consensus       171 ~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~---e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~  247 (325)
T PF08317_consen  171 QLEQLDELLPKLRERKAELEEELENLKQLVE---EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE  247 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443333322   122233 122   378888899999999999999999888888877


Q ss_pred             hhHHHhh
Q 005743          246 SMENQLT  252 (679)
Q Consensus       246 sAe~~~~  252 (679)
                      ....+..
T Consensus       248 ~~~~~k~  254 (325)
T PF08317_consen  248 ELEEQKQ  254 (325)
T ss_pred             HHHHHHH
Confidence            7765543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=90.44  E-value=31  Score=42.22  Aligned_cols=45  Identities=20%  Similarity=0.146  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER  201 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q  201 (679)
                      +.+|+-+|.....||..|..+...||.|.+.||+-++.+..-.+|
T Consensus        94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke  138 (1265)
T KOG0976|consen   94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKE  138 (1265)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557777777778888888888888888888888888776655543

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.35  E-value=18  Score=38.73  Aligned_cols=38  Identities=18%  Similarity=0.087  Sum_probs=20.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~  251 (679)
                      ..+...+.++.++++...+++.+...+...++.++.++
T Consensus       196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~  233 (423)
T TIGR01843       196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLER  233 (423)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555554443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=90.28  E-value=12  Score=36.69  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=14.4

Q ss_pred             HhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743          168 KIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (679)
Q Consensus       168 ~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~  195 (679)
                      .++|..|+.+|+.|-.+.++|..++..+
T Consensus        51 k~eie~L~~el~~lt~el~~L~~EL~~l   78 (140)
T PF10473_consen   51 KAEIETLEEELEELTSELNQLELELDTL   78 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=90.27  E-value=0.28  Score=54.87  Aligned_cols=30  Identities=13%  Similarity=0.219  Sum_probs=20.1

Q ss_pred             HhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743          168 KIENDEIVRRVGMLEDEKTSLSEQLAALSV  197 (679)
Q Consensus       168 ~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~  197 (679)
                      ..++..+.-++++||+..-||.-.|-++..
T Consensus        56 f~da~~f~~R~NSLQ~RIDRL~vkVtqLDs   85 (518)
T KOG1830|consen   56 FNDANNFNHRANSLQERIDRLAVKVTQLDS   85 (518)
T ss_pred             HHHhhhhhhhhhHHHHHHHHHhhhhhccCC
Confidence            456677777777777777777666555443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=90.23  E-value=0.085  Score=61.88  Aligned_cols=38  Identities=29%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             HHHHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHH
Q 005743          268 AEALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVN  305 (679)
Q Consensus       268 eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiN  305 (679)
                      .++..|...+..|...++.+...++..+.|.-.|++.+
T Consensus       384 ~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~  421 (713)
T PF05622_consen  384 RRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETN  421 (713)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666666666666666555544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=90.23  E-value=13  Score=44.49  Aligned_cols=87  Identities=21%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhh----------hcChHHH
Q 005743          212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR----------HTNEDLS  281 (679)
Q Consensus       212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR----------~~Ne~L~  281 (679)
                      +++.|+.||......-......|-|...|...|..++..+.+     ....|..++.-+-.+=          .+-+.|.
T Consensus       174 Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~-----q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~  248 (739)
T PF07111_consen  174 LEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA-----QVTLVEQLRKYVGEQVPPEVHSQAWEPEREELL  248 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHhhhCCcccccHHHHHHHHHHH
Confidence            356666666666666666666666777777777766655533     1122333333321111          2235788


Q ss_pred             HHHHHHhhhhhchH--HHHHHHHH
Q 005743          282 KQVEGLQMSRLNEV--EELAYLRW  303 (679)
Q Consensus       282 ~QlE~l~~~Re~dv--EELvylRw  303 (679)
                      +-|+.|+++|++--  -||.+-|.
T Consensus       249 ~tVq~L~edR~~L~~T~ELLqVRv  272 (739)
T PF07111_consen  249 ETVQHLQEDRDALQATAELLQVRV  272 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887532  35554343

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=90.23  E-value=0.41  Score=53.32  Aligned_cols=7  Identities=57%  Similarity=1.046  Sum_probs=3.2

Q ss_pred             CCCCCCC
Q 005743          472 PNPPPRP  478 (679)
Q Consensus       472 p~PPP~p  478 (679)
                      |+=||++
T Consensus       485 PPlPPr~  491 (563)
T KOG1785|consen  485 PPLPPRL  491 (563)
T ss_pred             CCCCCCc
Confidence            4444554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.22  E-value=13  Score=48.12  Aligned_cols=13  Identities=23%  Similarity=0.401  Sum_probs=7.9

Q ss_pred             hhhHHHHHhhcCC
Q 005743          618 LVDERAVLKHFDW  630 (679)
Q Consensus       618 LsDEraVLk~F~w  630 (679)
                      |++-.++-.||+|
T Consensus       961 l~~~~~~~~~~~y  973 (1486)
T PRK04863        961 LTEVVQRRAHFSY  973 (1486)
T ss_pred             HHHHHHHHHhccH
Confidence            5555666666655

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=90.15  E-value=9.8  Score=38.98  Aligned_cols=80  Identities=13%  Similarity=0.105  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhhHHHhhhHHHHHHHHHH-----HHHHHhhhhhhh-hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005743          171 NDEIVRRVGMLEDEKTSLSEQLAALSV-----ILERKNDNKNAI-NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKF  244 (679)
Q Consensus       171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~-----~~~Q~ee~~k~d-~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL  244 (679)
                      +-.+...|..+.+++..|+.++.+...     ......+ .+.+ .+.+.++..|..++..+++.+.+++....++...|
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQ-LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666777777777776666554     1111010 1111 12235555666666666666666666555555555


Q ss_pred             hhhHHHh
Q 005743          245 SSMENQL  251 (679)
Q Consensus       245 ~sAe~~~  251 (679)
                      +.....+
T Consensus       101 ~~~~~~l  107 (302)
T PF10186_consen  101 EQRRSRL  107 (302)
T ss_pred             HHHHHHH
Confidence            5555444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=90.01  E-value=16  Score=40.18  Aligned_cols=65  Identities=15%  Similarity=0.269  Sum_probs=37.0

Q ss_pred             HHHHhhhhhhhhhHHHhhhhhcc--chhHHHHHHHHHHHHhhhcChHHHHHHHHHhh---hhhchHHHHH
Q 005743          235 MEKRNLACKFSSMENQLTSLAKA--SESDIISKIKAEALVLRHTNEDLSKQVEGLQM---SRLNEVEELA  299 (679)
Q Consensus       235 ~EKreL~~KL~sAe~~~~~~~~~--~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~---~Re~dvEELv  299 (679)
                      +|+.+|...|+.+..++..+.-.  +=-|.-..+..|-+..|..-..|..++..+..   .|-.||+.|+
T Consensus       126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi  195 (319)
T PF09789_consen  126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALI  195 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Confidence            45555555555555554443211  00011123446667777777788888877754   4666788888

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.97  E-value=17  Score=41.72  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=52.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE  285 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE  285 (679)
                      .++..-=.|+.|+=+.+-.+-.|-++|-.++..-+.+..- .+      ..++.++|..+|..|+.|..+|.
T Consensus       455 t~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l-~s------lEkl~~Dyqairqen~~L~~~iR  519 (521)
T KOG1937|consen  455 TRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL-KS------LEKLHQDYQAIRQENDQLFSEIR  519 (521)
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH-hh------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            6677777899999999999999999999999886644321 11      34889999999999999999874

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=89.89  E-value=12  Score=47.08  Aligned_cols=63  Identities=11%  Similarity=0.076  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--------HhhhhhhhhccchhhhhHHHHHHHHHHHHHHH
Q 005743          169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILER--------KNDNKNAINMGSSSSQNLEMEVVELRRLNKEL  233 (679)
Q Consensus       169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q--------~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeL  233 (679)
                      .++..++..|.+|++.++.+..++....-.++.        ++++.+.  ..+..++-++.+...++..++++
T Consensus       623 e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~--~~e~~lk~~q~~~eq~~~E~~~~  693 (1317)
T KOG0612|consen  623 EIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEI--KLERKLKMLQNELEQENAEHHRL  693 (1317)
T ss_pred             HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            366777778888888777776655443333331        1112222  23455555555555555555555

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=89.81  E-value=35  Score=42.61  Aligned_cols=71  Identities=21%  Similarity=0.332  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHhhhh------chh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHH
Q 005743          125 LELDSLRSLLQESKER-------EFKLQAELSEWKR------NPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSE  190 (679)
Q Consensus       125 ~EI~~Lr~~V~eLqER-------E~kLE~ELlEyKE------QE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~  190 (679)
                      .+++.++..|.+|++-       ..=|+.||..|+-      .|+ |..|+.+|.--..+.++..-+++-|..||..|+-
T Consensus       257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~  336 (1195)
T KOG4643|consen  257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV  336 (1195)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            4455566666665554       4456677777722      334 7778888777777888888888888888888876


Q ss_pred             HHHHH
Q 005743          191 QLAAL  195 (679)
Q Consensus       191 qv~e~  195 (679)
                      +-+.+
T Consensus       337 q~eqL  341 (1195)
T KOG4643|consen  337 QKEQL  341 (1195)
T ss_pred             HHHHh
Confidence            65543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=89.79  E-value=26  Score=40.67  Aligned_cols=46  Identities=24%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             HHHhhhcChHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHhhhhh
Q 005743          270 ALVLRHTNEDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQNS  315 (679)
Q Consensus       270 ~~~LR~~Ne~L~~QlE~l~~~Re~dvEELvylRwiNacLR~EL~d~  315 (679)
                      ++.+...-+++..+++.+...+..-.+.+..+|=...-.|..+..+
T Consensus       378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~  423 (569)
T PRK04778        378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY  423 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555558888888888887777776666655554344445444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=89.69  E-value=9.4  Score=46.20  Aligned_cols=134  Identities=18%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--------Hhhhhhhhhcc---chhhhh-------
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER--------KNDNKNAINMG---SSSSQN-------  218 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q--------~ee~~k~d~e~---e~~l~~-------  218 (679)
                      |..|+++|..--.||.+|+..+....++..++..++-.+-.....        ..+...++.|+   ..++..       
T Consensus       240 i~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d  319 (775)
T PF10174_consen  240 IASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSD  319 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            666666666666677777666666666666665555443322221        12222333232   133343       


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchh--HHHHHHHHHHHHhhhcChHHHHHHHHHhh
Q 005743          219 -------LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASES--DIISKIKAEALVLRHTNEDLSKQVEGLQM  289 (679)
Q Consensus       219 -------LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es--~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~  289 (679)
                             |-..+......+.-||-+.-.|..+|+.+..++..-....+.  +..+...-|++.||..++.....|.+|+.
T Consensus       320 ~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~  399 (775)
T PF10174_consen  320 MRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQK  399 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   444444444445556777777888888887766553322111  11223344455566666555556655554


Q ss_pred             h
Q 005743          290 S  290 (679)
Q Consensus       290 ~  290 (679)
                      .
T Consensus       400 k  400 (775)
T PF10174_consen  400 K  400 (775)
T ss_pred             H
Confidence            4

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=89.59  E-value=33  Score=37.67  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=20.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      ..|..|+.+...++....+|..||=+|---|+.-|
T Consensus       142 k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQ  176 (310)
T PF09755_consen  142 KKIERLEKEKSAKQEELERLRREKVDLENTLEQEQ  176 (310)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Confidence            55555666555555566666666666555555443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=89.57  E-value=11  Score=35.55  Aligned_cols=71  Identities=23%  Similarity=0.264  Sum_probs=37.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE  285 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE  285 (679)
                      +.|..|..++.+++.....|+.+.......|+..+.....--..-+.+ +..++.-+.-|...|-=|..||+
T Consensus        59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e-~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKE-LSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            666667777777777777777766666666666665433211111111 22334444444444444444444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=89.47  E-value=12  Score=38.03  Aligned_cols=74  Identities=26%  Similarity=0.336  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhH-hHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKK-IENDEIVRRVGMLEDEKTSLSEQLAALS  196 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~-~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~  196 (679)
                      +..||..|+..++.+++++..++..+.+. .+...    +.-|+.-...+. .+.+.|..+++.++.+-..-...+..+.
T Consensus        66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Le  145 (194)
T PF15619_consen   66 HNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELE  145 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788888888888888888777777665 22222    333333322222 3666666666666665554444444433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=89.40  E-value=14  Score=44.29  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=24.4

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      +..+.+++.|+.-++..+++||.|...|.+||....
T Consensus       586 ~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k  621 (698)
T KOG0978|consen  586 QEQYAELELELEIEKFKRKRLEEELERLKRKLERLK  621 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356666667777777777777777777777766654

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=89.36  E-value=41  Score=40.51  Aligned_cols=113  Identities=19%  Similarity=0.278  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH------------Hhhhhhhhhcc---chhhhhHHHH
Q 005743          158 LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER------------KNDNKNAINMG---SSSSQNLEME  222 (679)
Q Consensus       158 ~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q------------~ee~~k~d~e~---e~~l~~LE~E  222 (679)
                      ..+|-.+.....+...+..+|..|+..+..|.+++.....-.++            ++.+...+.++   ++.++-||..
T Consensus       516 Kk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk  595 (786)
T PF05483_consen  516 KKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENK  595 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHH
Confidence            34444444444566666778888888888887776533322222            11111122222   2444444444


Q ss_pred             HHHHH-------HHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhh
Q 005743          223 VVELR-------RLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRH  275 (679)
Q Consensus       223 V~ELR-------R~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~  275 (679)
                      +-.||       ....+||.+|.-|..+..+--.+++.+    | --|.+++.|+..+..
T Consensus       596 ~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~----e-ikVn~L~~E~e~~kk  650 (786)
T PF05483_consen  596 CNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVY----E-IKVNKLQEELENLKK  650 (786)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHh
Confidence            44444       466778888888877664433343322    1 124455555554433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK01156 chromosome segregation protein; Provisional

Probab=89.32  E-value=34  Score=41.30  Aligned_cols=33  Identities=9%  Similarity=0.103  Sum_probs=19.8

Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005743          116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAEL  148 (679)
Q Consensus       116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~EL  148 (679)
                      |......+..+|..|+..++.+..+-.+++..+
T Consensus       474 ~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~  506 (895)
T PRK01156        474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRK  506 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444566777777777766666555554333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=89.31  E-value=22  Score=36.17  Aligned_cols=77  Identities=25%  Similarity=0.344  Sum_probs=52.5

Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh-------HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhh
Q 005743          116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK-------VLELERELEAKKIENDEIVRRVGMLEDEKTS  187 (679)
Q Consensus       116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-------I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~r  187 (679)
                      ....+.+...|...|..-+..+++.-..|+.+|..| ++..+       +..++.+|..-.-+-..|.+++..|+.|...
T Consensus        46 ~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde  125 (201)
T PF13851_consen   46 NEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE  125 (201)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677888999999999999999999999999999 55544       4444444444444555555555555555555


Q ss_pred             HHHHH
Q 005743          188 LSEQL  192 (679)
Q Consensus       188 Lq~qv  192 (679)
                      |....
T Consensus       126 L~~kf  130 (201)
T PF13851_consen  126 LYRKF  130 (201)
T ss_pred             HHHHH
Confidence            55443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=89.31  E-value=37  Score=37.11  Aligned_cols=139  Identities=18%  Similarity=0.181  Sum_probs=83.0

Q ss_pred             ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhchh----HHHHHHHHHHhHh-------------
Q 005743          115 RQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW--------KRNPK----VLELERELEAKKI-------------  169 (679)
Q Consensus       115 ~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy--------KEQE~----I~ELqrqL~~k~~-------------  169 (679)
                      .|......++.|-.+|.+.+..=++-..+||.++.-|        .+-+.    -++|+.-++....             
T Consensus        60 qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~  139 (305)
T PF14915_consen   60 QYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDV  139 (305)
T ss_pred             HHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchH
Confidence            3666677788999999999988888888899998888        11111    2333332222111             


Q ss_pred             -----HHHHHHHHHhhhHHHhhhHHHHHHHHH-------HHHH--H------Hhhhhhhhhcc---chhhhhHHHHHHHH
Q 005743          170 -----ENDEIVRRVGMLEDEKTSLSEQLAALS-------VILE--R------KNDNKNAINMG---SSSSQNLEMEVVEL  226 (679)
Q Consensus       170 -----Ei~~Lk~kI~sLEaE~~rLq~qv~e~~-------~~~~--Q------~ee~~k~d~e~---e~~l~~LE~EV~EL  226 (679)
                           ...+|.++++.-|+.-+.|+.++-...       .+.+  |      +......+.+.   +..+..--+.-.-|
T Consensus       140 S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~  219 (305)
T PF14915_consen  140 SNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESL  219 (305)
T ss_pred             HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                 235666666666666666665554332       2222  1      01111111111   24455555555667


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743          227 RRLNKELQMEKRNLACKFSSMENQLTS  253 (679)
Q Consensus       227 RR~NkeLQ~EKreL~~KL~sAe~~~~~  253 (679)
                      .-...+||-||.=|-..|+.|..++..
T Consensus       220 eERL~QlqsEN~LLrQQLddA~~K~~~  246 (305)
T PF14915_consen  220 EERLSQLQSENMLLRQQLDDAHNKADN  246 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888899999999999999877654

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=89.23  E-value=29  Score=38.87  Aligned_cols=27  Identities=4%  Similarity=0.038  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743          125 LELDSLRSLLQESKEREFKLQAELSEW  151 (679)
Q Consensus       125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy  151 (679)
                      .=++-|...+..++.+=...|.+|..|
T Consensus       161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f  187 (498)
T TIGR03007       161 SAQRFIDEQIKTYEKKLEAAENRLKAF  187 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777777777777777

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=88.99  E-value=24  Score=39.50  Aligned_cols=32  Identities=13%  Similarity=0.044  Sum_probs=26.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005743          119 GSRDLFLELDSLRSLLQESKEREFKLQAELSE  150 (679)
Q Consensus       119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlE  150 (679)
                      +...+..++..|+..+..|+.+..+|+.++..
T Consensus        91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~  122 (457)
T TIGR01000        91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS  122 (457)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556889999999999999999999887753

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=88.92  E-value=19  Score=44.72  Aligned_cols=24  Identities=33%  Similarity=0.322  Sum_probs=17.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQ  145 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE  145 (679)
                      ++.++|+.|+-.|+.+.+|+..+.
T Consensus       206 ~L~~~~~~l~kdVE~~rer~~~~~  229 (1072)
T KOG0979|consen  206 RLEDEIDKLEKDVERVRERERKKS  229 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777778888888877777765

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=88.76  E-value=16  Score=42.80  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhHh-HHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          157 VLELERELEAKKI-ENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       157 I~ELqrqL~~k~~-Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      .-++..+|+..-. ...-+.-+|+.|++.+.+|.+++.+
T Consensus       215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e  253 (581)
T KOG0995|consen  215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINE  253 (581)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444443332 2223445556666666666666653

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.69  E-value=3.5  Score=40.16  Aligned_cols=85  Identities=25%  Similarity=0.406  Sum_probs=53.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh-
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL-  292 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re-  292 (679)
                      ..+.+|..++.+|+..+.+|+.+...|...|....+..      |..    .+...+..|+.+++.|...|+.|+.... 
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~------t~~----el~~~i~~l~~e~~~l~~kL~~l~~~~~~  141 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEP------TNE----ELREEIEELEEEIEELEEKLEKLRSGSKP  141 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            44666666666666666666666666655555543322      222    3457777788888899999999887543 


Q ss_pred             ---chHHHHH--HHHHHHHHH
Q 005743          293 ---NEVEELA--YLRWVNSCL  308 (679)
Q Consensus       293 ---~dvEELv--ylRwiNacL  308 (679)
                         .+++.+.  |.+|...|.
T Consensus       142 vs~ee~~~~~~~~~~~~k~w~  162 (169)
T PF07106_consen  142 VSPEEKEKLEKEYKKWRKEWK  162 (169)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
Confidence               4666666  446666663

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=88.66  E-value=46  Score=40.11  Aligned_cols=74  Identities=26%  Similarity=0.405  Sum_probs=51.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHH------HHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh
Q 005743          215 SSQNLEMEVVELRRLNKELQ------MEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ  288 (679)
Q Consensus       215 ~l~~LE~EV~ELRR~NkeLQ------~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~  288 (679)
                      .-++-|+++.||+....+=|      .+---.+-.|..++..+.-+....|.+ |-.++...+..-..+-.-++||+.+.
T Consensus       399 ~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~eke-v~dLe~~l~~~~~~eq~yskQVeeLK  477 (786)
T PF05483_consen  399 QKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKE-VHDLEIQLTTIKESEQHYSKQVEELK  477 (786)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33455666888888776655      222334556777777777776666665 44778888888888888899999887


Q ss_pred             h
Q 005743          289 M  289 (679)
Q Consensus       289 ~  289 (679)
                      .
T Consensus       478 t  478 (786)
T PF05483_consen  478 T  478 (786)
T ss_pred             H
Confidence            6

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>smart00787 Spc7 Spc7 kinetochore protein

Probab=88.56  E-value=15  Score=39.86  Aligned_cols=93  Identities=18%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhc----cchhhhhHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINM----GSSSSQNLEMEVVELRRLNKE  232 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e----~e~~l~~LE~EV~ELRR~Nke  232 (679)
                      +..|+.....-...+..++.-+-.|......|+.++..+..+..   +...+|.+    +...+.++..+++.++....+
T Consensus       153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~---e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e  229 (312)
T smart00787      153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED---ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE  229 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555544444455555555556666666666666655444333   22333422    137788888888888888888


Q ss_pred             HHHHHHhhhhhhhhhHHHhh
Q 005743          233 LQMEKRNLACKFSSMENQLT  252 (679)
Q Consensus       233 LQ~EKreL~~KL~sAe~~~~  252 (679)
                      +|.|..+|..+++....+..
T Consensus       230 ~~~~l~~l~~~I~~~~~~k~  249 (312)
T smart00787      230 LEEELQELESKIEDLTNKKS  249 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887765553

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=88.45  E-value=19  Score=35.22  Aligned_cols=69  Identities=28%  Similarity=0.288  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E  236 (679)
                      |..|+.+|..-+.++..|...+.+|..++..|-.++-.                 ...++.+||.-...+++....++.+
T Consensus        54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~-----------------~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQK-----------------KQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            55566666666666666777776666666555433211                 2345666666666666666666666


Q ss_pred             HHhhhh
Q 005743          237 KRNLAC  242 (679)
Q Consensus       237 KreL~~  242 (679)
                      +..+..
T Consensus       117 k~q~~e  122 (140)
T PF10473_consen  117 KVQLKE  122 (140)
T ss_pred             HHHHHH
Confidence            544333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=88.33  E-value=46  Score=41.02  Aligned_cols=20  Identities=20%  Similarity=0.187  Sum_probs=11.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhh
Q 005743          186 TSLSEQLAALSVILERKNDN  205 (679)
Q Consensus       186 ~rLq~qv~e~~~~~~Q~ee~  205 (679)
                      ++|+++.++..+.+.|-+.+
T Consensus       389 eqLr~elaql~a~r~q~eka  408 (980)
T KOG0980|consen  389 EQLRNELAQLLASRTQLEKA  408 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            36666666666666654443

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.13  E-value=5.5  Score=43.97  Aligned_cols=10  Identities=20%  Similarity=0.358  Sum_probs=4.6

Q ss_pred             CcHHHHHHHH
Q 005743          664 VPCDLALKKM  673 (679)
Q Consensus       664 ~pc~~aL~km  673 (679)
                      ++.+.-|+-+
T Consensus       331 i~l~~yLr~V  340 (365)
T KOG2391|consen  331 IDLDQYLRHV  340 (365)
T ss_pred             eeHHHHHHHH
Confidence            4444444443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=88.06  E-value=3.6  Score=49.23  Aligned_cols=76  Identities=28%  Similarity=0.396  Sum_probs=54.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHH---hHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEA---KKIENDEIVRRVGMLEDEKTSLSEQLAALSV  197 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~---k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~  197 (679)
                      +++.|...||.-|++++.||.+|   |.+|-|.|. .--||+|+..   ..+|.+-|+-.|..|++|..-|..|+.+..+
T Consensus        73 ~~e~~~~~lr~e~ke~K~rE~rl---l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r  149 (717)
T PF09730_consen   73 DLELERKRLREEIKEYKFREARL---LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR  149 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666655   334445555 5567787764   3367788999999999999999999999888


Q ss_pred             HHH
Q 005743          198 ILE  200 (679)
Q Consensus       198 ~~~  200 (679)
                      +++
T Consensus       150 Lk~  152 (717)
T PF09730_consen  150 LKE  152 (717)
T ss_pred             HHH
Confidence            877

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=88.05  E-value=7.4  Score=39.90  Aligned_cols=106  Identities=20%  Similarity=0.105  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH--HHH---
Q 005743          128 DSLRSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV--ILE---  200 (679)
Q Consensus       128 ~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~--~~~---  200 (679)
                      +.|+--..+|-.|-.+.|.+-+-. -++-. ++|.-++|+.--.||..|+.--.-|+.+|++|.+.+--+.-  .+.   
T Consensus        12 ell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrkl   91 (195)
T PF10226_consen   12 ELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKL   91 (195)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHH
Confidence            344555566667777777776666 66666 88999999999999999999999999999998876633221  111   


Q ss_pred             --HHhh-------hhhhhhcc-chhhhhHHHHHHHHHHHHHHH
Q 005743          201 --RKND-------NKNAINMG-SSSSQNLEMEVVELRRLNKEL  233 (679)
Q Consensus       201 --Q~ee-------~~k~d~e~-e~~l~~LE~EV~ELRR~NkeL  233 (679)
                        +-|.       ++..+... +++|++||....+|-|.|.+|
T Consensus        92 arEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eL  134 (195)
T PF10226_consen   92 AREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLEL  134 (195)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence              0010       11222112 488888888888888777665

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=87.70  E-value=29  Score=42.10  Aligned_cols=26  Identities=23%  Similarity=0.040  Sum_probs=12.5

Q ss_pred             HHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743          175 VRRVGMLEDEKTSLSEQLAALSVILE  200 (679)
Q Consensus       175 k~kI~sLEaE~~rLq~qv~e~~~~~~  200 (679)
                      +.+|.+||+-|.-||.|+.|..+..+
T Consensus       426 n~El~sLqSlN~~Lq~ql~es~k~~e  451 (861)
T PF15254_consen  426 NLELFSLQSLNMSLQNQLQESLKSQE  451 (861)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHH
Confidence            34444555555555555554444333

>PF15195 TMEM210: TMEM210 family

Probab=87.47  E-value=0.34  Score=44.73  Aligned_cols=7  Identities=43%  Similarity=0.705  Sum_probs=2.7

Q ss_pred             CCCCCCC
Q 005743          470 RVPNPPP  476 (679)
Q Consensus       470 rvp~PPP  476 (679)
                      .|+-=||
T Consensus        83 eVsmm~~   89 (116)
T PF15195_consen   83 EVSMMPP   89 (116)
T ss_pred             cccccCc
Confidence            3443333

>PRK01156 chromosome segregation protein; Provisional

Probab=87.40  E-value=68  Score=38.85  Aligned_cols=6  Identities=0%  Similarity=-0.025  Sum_probs=2.3

Q ss_pred             ccccch
Q 005743          374 NLECQD  379 (679)
Q Consensus       374 ~~~~~~  379 (679)
                      .++-|+
T Consensus       830 ilDEpt  835 (895)
T PRK01156        830 IMDEPT  835 (895)
T ss_pred             EEeCCC
Confidence            333343

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=87.29  E-value=8.3  Score=35.35  Aligned_cols=73  Identities=19%  Similarity=0.267  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh--HHHH------HHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHH
Q 005743          126 ELDSLRSLLQESKEREFKLQAELSEW----KRNPK--VLEL------ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLA  193 (679)
Q Consensus       126 EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~--I~EL------qrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~  193 (679)
                      .-..+...+..|..++..|+..+..|    ++.+.  ++-+      .+.......+|..|..+|+.|+++..++++.|.
T Consensus        26 ~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~  105 (126)
T PF13863_consen   26 REEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE  105 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666788999999999887777    66665  2222      222334457999999999999999999999998


Q ss_pred             HHHHH
Q 005743          194 ALSVI  198 (679)
Q Consensus       194 e~~~~  198 (679)
                      .|..-
T Consensus       106 ~~~~Y  110 (126)
T PF13863_consen  106 EYKKY  110 (126)
T ss_pred             HHHHH
Confidence            87643

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=87.00  E-value=19  Score=36.29  Aligned_cols=119  Identities=11%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH--Hhhhh
Q 005743          131 RSLLQESKEREFKLQAELSEW-KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER--KNDNK  206 (679)
Q Consensus       131 r~~V~eLqERE~kLE~ELlEy-KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q--~ee~~  206 (679)
                      +..|..+-++-..=+.-|..| ++.+. +.+++..+..-.+.-..|.+++..++.+...++.++......-..  -.+++
T Consensus        11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al   90 (221)
T PF04012_consen   11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREAL   90 (221)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            333444444433333334444 66666 788888888888888888888888888888888777543211110  01111


Q ss_pred             hhh-----------h---ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743          207 NAI-----------N---MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (679)
Q Consensus       207 k~d-----------~---e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~  249 (679)
                      .+.           .   .....+..|...+.+|+....+++.++..|.-+...|++
T Consensus        91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a  147 (221)
T PF04012_consen   91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKA  147 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111           1   112445555555555555555555555555555555554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.88  E-value=21  Score=34.92  Aligned_cols=31  Identities=32%  Similarity=0.271  Sum_probs=15.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005743          215 SSQNLEMEVVELRRLNKELQMEKRNLACKFS  245 (679)
Q Consensus       215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~  245 (679)
                      .++++..++.+++....+++.....|..++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  182 (191)
T PF04156_consen  152 ELQDSREEVQELRSQLERLQENLQQLEEKIQ  182 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=86.78  E-value=5.2  Score=35.97  Aligned_cols=71  Identities=24%  Similarity=0.291  Sum_probs=46.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhchhHHHHHHHHHH------------hHhHHHHHHHHHhhhHHHh
Q 005743          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW---KRNPKVLELERELEA------------KKIENDEIVRRVGMLEDEK  185 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy---KEQE~I~ELqrqL~~------------k~~Ei~~Lk~kI~sLEaE~  185 (679)
                      .....||..|+..+..|+..-..|.++=++.   +|   +..|+.+|..            -..+|..|+.++..|+.+|
T Consensus        15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~e---L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en   91 (100)
T PF01486_consen   15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKE---LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEEN   91 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccccchHH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446777778777777776666666532222   22   3334444432            1248999999999999999


Q ss_pred             hhHHHHHHH
Q 005743          186 TSLSEQLAA  194 (679)
Q Consensus       186 ~rLq~qv~e  194 (679)
                      ..|+.+++|
T Consensus        92 ~~L~~~~~e  100 (100)
T PF01486_consen   92 NQLRQKIEE  100 (100)
T ss_pred             HHHHHHhcC
Confidence            999988764

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=86.70  E-value=70  Score=37.25  Aligned_cols=73  Identities=21%  Similarity=0.278  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh---hhhhchH
Q 005743          219 LEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ---MSRLNEV  295 (679)
Q Consensus       219 LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~---~~Re~dv  295 (679)
                      ||.-+-++.-...+|+.+.+-+..+|..|-+.....-...        .+|..+.|.+-|.|.++|.++.   ...--+.
T Consensus       485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~--------e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~  556 (622)
T COG5185         485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEEN--------ERELVAQRIEIEKLEKELNDLNLLSKTSILDA  556 (622)
T ss_pred             HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHhhhhccchHhhH
Confidence            5555566666666777777777777776655443322222        3444445555556655555543   3444566


Q ss_pred             HHHH
Q 005743          296 EELA  299 (679)
Q Consensus       296 EELv  299 (679)
                      |++|
T Consensus       557 eq~v  560 (622)
T COG5185         557 EQLV  560 (622)
T ss_pred             HHHH
Confidence            6666

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=86.65  E-value=82  Score=39.71  Aligned_cols=98  Identities=14%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccc--hhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhh--
Q 005743          217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKAS--ESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRL--  292 (679)
Q Consensus       217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~--Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re--  292 (679)
                      ++.-..|+-+++....+|.+-..|..+-++++..+.+...+-  +..-+.+++.|++.-+..-.+|.+++..|..+.-  
T Consensus       803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~  882 (1141)
T KOG0018|consen  803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSI  882 (1141)
T ss_pred             ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            666667777777777777777777777777776665543221  1223456777888777777888888888887654  


Q ss_pred             -chHHHHHHHHHHHHHHHHhhhhh
Q 005743          293 -NEVEELAYLRWVNSCLRDELQNS  315 (679)
Q Consensus       293 -~dvEELvylRwiNacLR~EL~d~  315 (679)
                       +++|-+.+ -|.|+-..+.|.+.
T Consensus       883 es~ie~~~~-er~~lL~~ckl~~I  905 (1141)
T KOG0018|consen  883 ESKIERKES-ERHNLLSKCKLEDI  905 (1141)
T ss_pred             hhHHHHHHH-HHHHHHHHhhhccc
Confidence             44555555 66665444466555

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=86.61  E-value=52  Score=39.15  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=56.2

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhh----hHHHhhhhhc--cchhHHHHHHHHHHHHhhhc----------
Q 005743          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSS----MENQLTSLAK--ASESDIISKIKAEALVLRHT----------  276 (679)
Q Consensus       213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~s----Ae~~~~~~~~--~~Es~~Va~~~eE~~~LR~~----------  276 (679)
                      ...++.+|.-|-.|.+.++.-|-+..++..+++.    -.+.++.+-.  ..-...|..++.|+..||+.          
T Consensus       195 ~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~  274 (629)
T KOG0963|consen  195 QEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKL  274 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            4566677777777777777666666666555211    0111111100  01122333556666666653          


Q ss_pred             -ChHHHHHHHHHhhhhhchHHHHH-HHHHHHHHHHHhhhhh
Q 005743          277 -NEDLSKQVEGLQMSRLNEVEELA-YLRWVNSCLRDELQNS  315 (679)
Q Consensus       277 -Ne~L~~QlE~l~~~Re~dvEELv-ylRwiNacLR~EL~d~  315 (679)
                       +-+...++......++..+..|+ -..-+.+.+++|+-.+
T Consensus       275 ~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~  315 (629)
T KOG0963|consen  275 AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKH  315 (629)
T ss_pred             ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22444555556666777777777 3356667777777776

>PRK10884 SH3 domain-containing protein; Provisional

Probab=86.58  E-value=3.8  Score=42.04  Aligned_cols=40  Identities=15%  Similarity=0.066  Sum_probs=24.6

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743          212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (679)
Q Consensus       212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~  251 (679)
                      +++++...+..+.+|+..|.+|+.|...+..+++.++++.
T Consensus       123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~  162 (206)
T PRK10884        123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL  162 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666777777777666666555555555443

>PHA03211 serine/threonine kinase US3; Provisional

Probab=86.57  E-value=0.68  Score=51.74  Aligned_cols=13  Identities=8%  Similarity=0.100  Sum_probs=6.4

Q ss_pred             chhHHHHHHhhhh
Q 005743          634 KADTLREAAFGYR  646 (679)
Q Consensus       634 K~dalReAA~lY~  646 (679)
                      +.|.+--...+|.
T Consensus       342 ~sDvwSlGviL~E  354 (461)
T PHA03211        342 SVDIWSAGLVIFE  354 (461)
T ss_pred             hHHHHHHHHHHHH
Confidence            4455554444444

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=86.50  E-value=43  Score=36.48  Aligned_cols=79  Identities=27%  Similarity=0.278  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH---HHH------Hhh---------hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQ---AEL------SEW---------KRNPK-VLELERELEAKKIENDEIVRRVGMLED  183 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE---~EL------lEy---------KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEa  183 (679)
                      -..-+..|+..+.+++++=++-=   +||      +-|         -|+|. +.+|++.+..+.-++..++..+..|+.
T Consensus        75 se~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~  154 (302)
T PF09738_consen   75 SEASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLRE  154 (302)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456677888888887755421   111      222         44445 889999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHH
Q 005743          184 EKTSLSEQLAALSVILER  201 (679)
Q Consensus       184 E~~rLq~qv~e~~~~~~Q  201 (679)
                      +...|+++|.+...+.++
T Consensus       155 e~~~Lre~L~~rdeli~k  172 (302)
T PF09738_consen  155 ELDELREQLKQRDELIEK  172 (302)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999887766663

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.45  E-value=24  Score=33.64  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEW  151 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy  151 (679)
                      ..+.|++|.+.|+-++-.-..|+.++...
T Consensus        14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l   42 (120)
T PF12325_consen   14 SVQLVERLQSQLRRLEGELASLQEELARL   42 (120)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666666665555555555554444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=86.32  E-value=31  Score=41.95  Aligned_cols=35  Identities=31%  Similarity=0.397  Sum_probs=22.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      .++..||.|+..=|....++.-.-++|-.+|+...
T Consensus       680 ~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~  714 (769)
T PF05911_consen  680 SKISSLEEELEKERALSEELEAKCRELEEELERMK  714 (769)
T ss_pred             HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence            55666666666666666666666666666666554

The function of this family is unknown.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=86.08  E-value=0.23  Score=59.89  Aligned_cols=148  Identities=22%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743          116 QSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----------KRNPK-VLELERELEAKKIENDEIVRRVGMLED  183 (679)
Q Consensus       116 ~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-----------KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEa  183 (679)
                      +......+..+|+.|+..-..|+--...|+.++.+.           -+.|. ++.|+.+|..-...++.....++-|..
T Consensus       129 h~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~  208 (859)
T PF01576_consen  129 HQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTE  208 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666677777666666666666666666655           11111 444445555444455555555555555


Q ss_pred             HhhhHHHHHHHHHHHHHH------------------Hhh-------hhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 005743          184 EKTSLSEQLAALSVILER------------------KND-------NKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR  238 (679)
Q Consensus       184 E~~rLq~qv~e~~~~~~Q------------------~ee-------~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKr  238 (679)
                      .+.+|+.++.++..-.+.                  -++       ..+....+...++.++.++..||-...+-+..+.
T Consensus       209 ~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~  288 (859)
T PF01576_consen  209 QKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS  288 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            555555555554433331                  000       0111112347788888888888888888888888


Q ss_pred             hhhhhhhhhHHHhhhhhccchhHHH
Q 005743          239 NLACKFSSMENQLTSLAKASESDII  263 (679)
Q Consensus       239 eL~~KL~sAe~~~~~~~~~~Es~~V  263 (679)
                      +|-..|..+...+..+-.-.+.+.+
T Consensus       289 ~l~~qlsk~~~El~~~k~K~e~e~~  313 (859)
T PF01576_consen  289 ELERQLSKLNAELEQWKKKYEEEAE  313 (859)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            8888888887776655444444433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.08  E-value=48  Score=39.19  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=15.1

Q ss_pred             HHHHhhhcChHHHHHHHHHhhh
Q 005743          269 EALVLRHTNEDLSKQVEGLQMS  290 (679)
Q Consensus       269 E~~~LR~~Ne~L~~QlE~l~~~  290 (679)
                      |+..|||.+-.|.+.++.|+..
T Consensus       195 EyEglkheikRleEe~elln~q  216 (772)
T KOG0999|consen  195 EYEGLKHEIKRLEEETELLNSQ  216 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777766654

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.02  E-value=57  Score=38.62  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=30.9

Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743          211 MGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (679)
Q Consensus       211 e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~  249 (679)
                      ||-.-+++=..||.-.-.-.+.||.|...|.-||+-+-+
T Consensus       495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~  533 (594)
T PF05667_consen  495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFT  533 (594)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            344666777778888888889999999999999988754

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=85.83  E-value=59  Score=35.54  Aligned_cols=70  Identities=29%  Similarity=0.371  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh--h--hchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          125 LELDSLRSLLQESKEREFKLQAELSEW--K--RNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       125 ~EI~~Lr~~V~eLqERE~kLE~ELlEy--K--EQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      ..+..|+..+..+.++...|..++..|  +  +.-. ++||-.+.+.-..+-+.++.+|..|.++...+-+.+.+
T Consensus        13 ~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e   87 (294)
T COG1340          13 LKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE   87 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344578888889999999999999999  2  2222 88888888888888899999998888887665544444

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=85.60  E-value=74  Score=37.48  Aligned_cols=78  Identities=19%  Similarity=0.342  Sum_probs=42.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhH----hHHHHHHHHHhhhHHHhhhHH
Q 005743          119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKK----IENDEIVRRVGMLEDEKTSLS  189 (679)
Q Consensus       119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~----~Ei~~Lk~kI~sLEaE~~rLq  189 (679)
                      .......+++.|...+..++.+-..++.++..+    .+.+. +.+|+..+....    .+.+.|..++..++++..+.+
T Consensus       203 ~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~  282 (650)
T TIGR03185       203 LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANR  282 (650)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455566666666666666666666655555    22222 444444444322    244466666666666666666


Q ss_pred             HHHHHHH
Q 005743          190 EQLAALS  196 (679)
Q Consensus       190 ~qv~e~~  196 (679)
                      .++.++.
T Consensus       283 ~~l~~l~  289 (650)
T TIGR03185       283 AQLRELA  289 (650)
T ss_pred             HHHHHHh
Confidence            5555433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=85.55  E-value=0.56  Score=57.75  Aligned_cols=6  Identities=33%  Similarity=0.063  Sum_probs=2.3

Q ss_pred             hhhhhh
Q 005743          643 FGYRDL  648 (679)
Q Consensus       643 ~lY~~L  648 (679)
                      ++-+|.
T Consensus       176 rekRdR  181 (2365)
T COG5178         176 REKRDR  181 (2365)
T ss_pred             HHhhhh
Confidence            333433

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=85.49  E-value=30  Score=36.99  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRN  239 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKre  239 (679)
                      +-+.+|+.+|-.||+...+|+.+-.+
T Consensus       200 e~i~el~e~I~~L~~eV~~L~~~~~~  225 (258)
T PF15397_consen  200 EEIDELEEEIPQLRAEVEQLQAQAQD  225 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            56788888888888888888876653

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=85.27  E-value=16  Score=38.23  Aligned_cols=35  Identities=31%  Similarity=0.421  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQ  191 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~q  191 (679)
                      +.+|.-+++..-.+...|..+..-++.++++|+.+
T Consensus        35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~   69 (246)
T PF00769_consen   35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEE   69 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555544445555555555555555555443

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PHA03247 large tegument protein UL36; Provisional

Probab=85.19  E-value=1.6  Score=57.84  Aligned_cols=17  Identities=24%  Similarity=0.313  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 005743          134 LQESKEREFKLQAELSE  150 (679)
Q Consensus       134 V~eLqERE~kLE~ELlE  150 (679)
                      |..|.++...|..+..+
T Consensus       504 ~~~l~~~~~~i~~~v~~  520 (3151)
T PHA03247        504 VVRLAAREAAIAREVAE  520 (3151)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            33333333333333333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=85.17  E-value=7.8  Score=37.75  Aligned_cols=63  Identities=30%  Similarity=0.365  Sum_probs=44.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHHhhhHH
Q 005743          121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLED  183 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEa  183 (679)
                      ..+..||..|+..+.+|+.....|+.+|..+.-..+..||..++..-..++..|..++..|+.
T Consensus        75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345678888888888888888888888888855555666666665555566666666666655

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=85.10  E-value=0.27  Score=59.26  Aligned_cols=95  Identities=21%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             hhhhhHHHHHHH-------HHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHH
Q 005743          214 SSSQNLEMEVVE-------LRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEG  286 (679)
Q Consensus       214 ~~l~~LE~EV~E-------LRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~  286 (679)
                      ..|..|+.++.+       +.|..+.|+.+..+|-++|+.+-....            .+...+..+...--+|..+++.
T Consensus       525 r~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~------------e~~k~~kk~q~qlkdlq~~lee  592 (859)
T PF01576_consen  525 RQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANE------------EAQKQLKKLQAQLKDLQRELEE  592 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH------------HHHHHHHHHHHHHHHHhhhhHH
Confidence            455665555543       567778888888888888887742211            1122233233333366666666


Q ss_pred             HhhhhhchHHHHHHHHHHHHHHHHhhhhhccccc
Q 005743          287 LQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTN  320 (679)
Q Consensus       287 l~~~Re~dvEELvylRwiNacLR~EL~d~~sa~D  320 (679)
                      ....++.-.+.+.-..+-..-|..|+..+..+++
T Consensus       593 ~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~  626 (859)
T PF01576_consen  593 AQRAREELREQLAVSERRLRALQAELEELREALE  626 (859)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665555555332222236677776654444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=85.04  E-value=14  Score=46.54  Aligned_cols=50  Identities=16%  Similarity=0.226  Sum_probs=28.4

Q ss_pred             HHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh
Q 005743          234 QMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ  288 (679)
Q Consensus       234 Q~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~  288 (679)
                      ...|++|+.+|...-.+++.+..  +..   .++..+..++++-..+.+|++.+.
T Consensus       264 ~~~N~~Ls~~L~~~t~~~n~l~~--~~~---~~~~~l~~~~q~~~~i~eQi~~l~  313 (1109)
T PRK10929        264 FKINRELSQALNQQAQRMDLIAS--QQR---QAASQTLQVRQALNTLREQSQWLG  313 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34466666666655555555432  221   345666666666666777776665

>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]

Probab=84.80  E-value=2.2  Score=44.18  Aligned_cols=67  Identities=28%  Similarity=0.311  Sum_probs=53.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHH-HHHHHHHHhhhcChHHHHHHHHHh
Q 005743          217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIIS-KIKAEALVLRHTNEDLSKQVEGLQ  288 (679)
Q Consensus       217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va-~~~eE~~~LR~~Ne~L~~QlE~l~  288 (679)
                      ..++.++.+|.-.+++|+....++..|+++++.+-+..-     +++. ++++|+..|..+|..|..||+...
T Consensus       188 ~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r-----~ieEkk~~eei~fLk~tN~qLKaQLegI~  255 (259)
T KOG4001|consen  188 TRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEER-----EIEEKKMKEEIEFLKETNRQLKAQLEGIL  255 (259)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            456677888888899999999999999999997654322     2332 789999999999999999998753

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.69  E-value=26  Score=34.29  Aligned_cols=39  Identities=33%  Similarity=0.462  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~  195 (679)
                      +.+++.+|..-..|++.+...+..++.+...+++.....
T Consensus        83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~  121 (191)
T PF04156_consen   83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL  121 (191)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444455555555555555544444444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=84.63  E-value=91  Score=40.21  Aligned_cols=29  Identities=21%  Similarity=0.063  Sum_probs=16.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEW  151 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy  151 (679)
                      ++.+|..|...|..+.++-..|+..+...
T Consensus       747 l~~~IaeL~~~i~~l~~~l~~l~~r~~~L  775 (1353)
T TIGR02680       747 LDARLAAVDDELAELARELRALGARQRAL  775 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666555555555554444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=84.56  E-value=50  Score=33.70  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=14.4

Q ss_pred             hhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743          259 ESDIISKIKAEALVLRHTNEDLSKQVE  285 (679)
Q Consensus       259 Es~~Va~~~eE~~~LR~~Ne~L~~QlE  285 (679)
                      |..-+..+..++..|..+...|...|+
T Consensus       162 e~kK~~~~~~~~~~l~~ei~~L~~klk  188 (194)
T PF15619_consen  162 EKKKHKEAQEEVKSLQEEIQRLNQKLK  188 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444556666655555555555544

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=84.35  E-value=33  Score=32.73  Aligned_cols=44  Identities=25%  Similarity=0.258  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~  200 (679)
                      |..|+.+|...-.|+..|+.+++.|+.+...+.++++.+..-.+
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e   61 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENE   61 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888877655443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=84.14  E-value=39  Score=37.15  Aligned_cols=28  Identities=14%  Similarity=0.137  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743          126 ELDSLRSLLQESKEREFKLQAELSEWKR  153 (679)
Q Consensus       126 EI~~Lr~~V~eLqERE~kLE~ELlEyKE  153 (679)
                      -++-|...+..++.+=...|.+|..|++
T Consensus       172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~  199 (444)
T TIGR03017       172 AALWFVQQIAALREDLARAQSKLSAYQQ  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666666666633

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=84.04  E-value=98  Score=36.85  Aligned_cols=26  Identities=15%  Similarity=0.276  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005743          127 LDSLRSLLQESKEREFKLQAELSEWK  152 (679)
Q Consensus       127 I~~Lr~~V~eLqERE~kLE~ELlEyK  152 (679)
                      ++.|...+..++.+-...|.+|..||
T Consensus       196 ~~~L~~ql~~l~~~l~~aE~~l~~fk  221 (754)
T TIGR01005       196 ADFLAPEIADLSKQSRDAEAEVAAYR  221 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666663

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=83.96  E-value=77  Score=38.80  Aligned_cols=32  Identities=25%  Similarity=0.212  Sum_probs=17.9

Q ss_pred             hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743          169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (679)
Q Consensus       169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~  200 (679)
                      ..+..+...+..++...++|++...+......
T Consensus       274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~  305 (908)
T COG0419         274 EELRELERLLEELEEKIERLEELEREIEELEE  305 (908)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556666666666666655555544444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.79  E-value=27  Score=41.06  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~  200 (679)
                      .+.+|+-.|.--++|.+.|+.+..++-...+
T Consensus       295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666666666666666655554444

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=83.74  E-value=90  Score=35.95  Aligned_cols=19  Identities=32%  Similarity=0.198  Sum_probs=10.2

Q ss_pred             HhhhHHHhhhHHHHHHHHH
Q 005743          178 VGMLEDEKTSLSEQLAALS  196 (679)
Q Consensus       178 I~sLEaE~~rLq~qv~e~~  196 (679)
                      +..++.+.+.|.+......
T Consensus       189 tl~~e~~~~~L~~~~~A~~  207 (511)
T PF09787_consen  189 TLKKEIERQELEERPKALR  207 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3445666666665555333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=83.62  E-value=1.1e+02  Score=39.30  Aligned_cols=61  Identities=25%  Similarity=0.302  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHH
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSEWKRNPK-VLELERELEAKKIENDEIVRRVGMLEDE  184 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE  184 (679)
                      ..+|..|++++.++...-.+++..|....-.|. +.+|+..+......+..+.-.+..|..+
T Consensus       853 ~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~  914 (1294)
T KOG0962|consen  853 EREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVE  914 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhh
Confidence            345555555555555555555555544433333 5555555555444444444444444333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=83.55  E-value=93  Score=35.99  Aligned_cols=17  Identities=24%  Similarity=0.348  Sum_probs=12.0

Q ss_pred             cchHHHHHHHHHHHHHH
Q 005743          121 RDLFLELDSLRSLLQES  137 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eL  137 (679)
                      .++..||..|+..+...
T Consensus       175 e~L~~Ei~~lke~l~~~  191 (522)
T PF05701_consen  175 EELSKEIIALKESLESA  191 (522)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34577888888777665

Several sequences in this family are described as being myosin heavy chain-like.

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=83.41  E-value=1  Score=53.69  Aligned_cols=15  Identities=0%  Similarity=-0.055  Sum_probs=10.9

Q ss_pred             cchhHHHHHHHhhcc
Q 005743          523 RAPQVVEFYHSLMKR  537 (679)
Q Consensus       523 RaP~vvefY~SL~~r  537 (679)
                      ..+.|.-|||...+-
T Consensus       392 p~~~lk~l~wdk~~~  406 (833)
T KOG1922|consen  392 PKNKLKPLHWDKTRG  406 (833)
T ss_pred             CCCCCCCccccccCC
Confidence            357788888887654

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=83.21  E-value=5.7  Score=42.92  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=34.8

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhh
Q 005743          212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSL  254 (679)
Q Consensus       212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~  254 (679)
                      ++..++.|+.|..+|.....+|+.|..+|...+...+..+..+
T Consensus        48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l   90 (314)
T PF04111_consen   48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL   90 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888888888999999999999988888888887665544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=82.94  E-value=23  Score=42.70  Aligned_cols=73  Identities=14%  Similarity=0.088  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHH
Q 005743          125 LELDSLRSLLQESKERE-------FKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQL  192 (679)
Q Consensus       125 ~EI~~Lr~~V~eLqERE-------~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv  192 (679)
                      .++..|+.-+.+...+.       ..++..|+-. .|--.    .-+|+++|..+.+.+-.+.-++.+|+..-.-++.++
T Consensus        49 e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l  128 (916)
T KOG0249|consen   49 EMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKL  128 (916)
T ss_pred             HHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhh
Confidence            44455555555444333       3344444444 44433    668888888888888888888888888777777777


Q ss_pred             HHHHH
Q 005743          193 AALSV  197 (679)
Q Consensus       193 ~e~~~  197 (679)
                      ....+
T Consensus       129 ~qs~r  133 (916)
T KOG0249|consen  129 QQSLR  133 (916)
T ss_pred             HhHHh
Confidence            66555

>TIGR02977 phageshock_pspA phage shock protein A

Probab=82.84  E-value=35  Score=34.82  Aligned_cols=99  Identities=14%  Similarity=0.194  Sum_probs=53.3

Q ss_pred             hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH-----------HHHHH--Hhhhhhhhh---ccch
Q 005743          152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS-----------VILER--KNDNKNAIN---MGSS  214 (679)
Q Consensus       152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~-----------~~~~Q--~ee~~k~d~---e~e~  214 (679)
                      +|.+. |.+.+..|..-.+.-..|.+++..++.....++.++....           ...++  ++.+..-+.   ....
T Consensus        34 rem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~  113 (219)
T TIGR02977        34 QEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEE  113 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444 5555555555556666666777666666666665543221           11111  111111111   1135


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743          215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ  250 (679)
Q Consensus       215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~  250 (679)
                      .+..|+..+.+|++...++.-.+..|.-|...|+++
T Consensus       114 ~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~  149 (219)
T TIGR02977       114 TLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR  149 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666677777777777764

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=82.82  E-value=33  Score=37.33  Aligned_cols=141  Identities=20%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhH----HHhhhHHHHHHH
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLE----DEKTSLSEQLAA  194 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLE----aE~~rLq~qv~e  194 (679)
                      +=-...|.++...|.+.-..|+.+...+ +..+.    +-+|......-..++..|.+-..-++    ++-.++++.+++
T Consensus       136 eWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~  215 (312)
T smart00787      136 EWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKK  215 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHH
Confidence            3344556666666666665665554444 22222    22333222222333333433333332    244444444333


Q ss_pred             HHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhh
Q 005743          195 LSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLR  274 (679)
Q Consensus       195 ~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR  274 (679)
                      ...-..     .+     ...+.+++.++.+++....+...++.++...+..||.....-...+-.+ |..+++.+..|-
T Consensus       216 ~~~ei~-----~~-----~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E-i~~Lk~~~~~Le  284 (312)
T smart00787      216 LLQEIM-----IK-----VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE-IEKLKEQLKLLQ  284 (312)
T ss_pred             HHHHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHH
Confidence            221111     00     1334555555555555555566666666666666666554444444444 447777777664


Q ss_pred             h
Q 005743          275 H  275 (679)
Q Consensus       275 ~  275 (679)
                      +
T Consensus       285 ~  285 (312)
T smart00787      285 S  285 (312)
T ss_pred             H
Confidence            4

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=82.79  E-value=36  Score=41.09  Aligned_cols=106  Identities=23%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchh----HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH
Q 005743          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW-KRNPK----VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL  195 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-KEQE~----I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~  195 (679)
                      .|++.||.-=         .-+||+-||+.. +|...    ++|+|.+|.....++--..-+|..|-+       +|..+
T Consensus       256 ~DLfSEl~~~---------EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e-------~l~aL  319 (717)
T PF09730_consen  256 SDLFSELNLS---------EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTE-------QLDAL  319 (717)
T ss_pred             chhhhhcchH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence            4777776531         124666667666 33333    677777777665555444444444433       33333


Q ss_pred             HHHHH---H----Hhhh---h-------hhh---hcc-chhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 005743          196 SVILE---R----KNDN---K-------NAI---NMG-SSSSQNLEMEVVELRRLNKELQMEKRNLAC  242 (679)
Q Consensus       196 ~~~~~---Q----~ee~---~-------k~d---~e~-e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~  242 (679)
                      ..+..   +    ..+.   .       ..|   .++ +.+.+....||..|+...+.|..+...+..
T Consensus       320 ~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~  387 (717)
T PF09730_consen  320 RKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEE  387 (717)
T ss_pred             hhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33211   0    0000   0       001   121 466777777777777777777554444433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=82.68  E-value=38  Score=39.09  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHH
Q 005743          159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRL  229 (679)
Q Consensus       159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~  229 (679)
                      ..|++|+....+-..|..++..+.+.--.||+.-   .....|+....-.=.|+...|..-|.||.-|.+.
T Consensus       401 ~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry---~~eiQqKnksvsqclEmdk~LskKeeeverLQ~l  468 (527)
T PF15066_consen  401 NTQKHLQESRNEKETLQLELKKIKANYVHLQERY---MTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQL  468 (527)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH---HHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3444555555555555555555555544444431   1112222222112234556666667776544443

>PRK10698 phage shock protein PspA; Provisional

Probab=82.64  E-value=37  Score=35.05  Aligned_cols=99  Identities=12%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHH-----------HHHHHH--Hhhhhhhhhcc---ch
Q 005743          152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAAL-----------SVILER--KNDNKNAINMG---SS  214 (679)
Q Consensus       152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~-----------~~~~~Q--~ee~~k~d~e~---e~  214 (679)
                      +|.+. +.+++..+..-.++-..+.+++..++.....++.+..-.           +...++  .+.+...+.++   ..
T Consensus        34 ~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~  113 (222)
T PRK10698         34 QEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDE  113 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444 555555555555666667777777777666666544221           111111  11111111222   36


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743          215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ  250 (679)
Q Consensus       215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~  250 (679)
                      .+..|...+..|+....++...+..|.-|..+|+++
T Consensus       114 ~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~  149 (222)
T PRK10698        114 TLARMKKEIGELENKLSETRARQQALMLRHQAASSS  149 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888888888888888888888888864

>PRK09343 prefoldin subunit beta; Provisional

Probab=82.50  E-value=19  Score=33.84  Aligned_cols=42  Identities=17%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743          159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (679)
Q Consensus       159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~  200 (679)
                      .|+.+++...+++..+.+++..+-.....|+.++.+...+.+
T Consensus         4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~   45 (121)
T PRK09343          4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALE   45 (121)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366666777777777777777777777777777777776666

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=82.25  E-value=27  Score=32.95  Aligned_cols=86  Identities=17%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E  236 (679)
                      -.+|+++|..-...+.-++-.+.-|-.++..|.+.+..+..-..          ...+++.+|+.+|.|+++-...=-..
T Consensus        11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~----------s~~qr~~eLqaki~ea~~~le~eK~a   80 (107)
T PF09304_consen   11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNA----------SRNQRIAELQAKIDEARRNLEDEKQA   80 (107)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666666666666666665555544322111          12477888888888888877776666


Q ss_pred             HHhhhhhhhhhHHHhh
Q 005743          237 KRNLACKFSSMENQLT  252 (679)
Q Consensus       237 KreL~~KL~sAe~~~~  252 (679)
                      |.+|-.+|.-+|...+
T Consensus        81 k~~l~~r~~k~~~dka   96 (107)
T PF09304_consen   81 KLELESRLLKAQKDKA   96 (107)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            6688888887776544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.17  E-value=16  Score=42.21  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E  236 (679)
                      -.+|+.+|+...-++......|..+.++..+|+   .+.+....+-+++..|..++..|+=.|-..++=||+.=-.|+-+
T Consensus       336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~  412 (508)
T KOG3091|consen  336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPD  412 (508)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCcc
Confidence            469999999999999999999999999999998   33333333333444444556666666667777777777777777


Q ss_pred             HHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHH
Q 005743          237 KRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQV  284 (679)
Q Consensus       237 KreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~Ql  284 (679)
                      -.+|..||++..++++.    + +++-+++.+-+..+|..|..|.-+.
T Consensus       413 EE~Lr~Kldtll~~ln~----P-nq~k~Rl~~L~e~~r~q~~~~~~~~  455 (508)
T KOG3091|consen  413 EEELRAKLDTLLAQLNA----P-NQLKARLDELYEILRMQNSQLKLQE  455 (508)
T ss_pred             HHHHHHHHHHHHHHhcC----h-HHHHHHHHHHHHHHHhhcchhcccc
Confidence            77788888887766643    2 5566666677777777654444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=82.10  E-value=72  Score=37.18  Aligned_cols=73  Identities=12%  Similarity=0.171  Sum_probs=39.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhH-----HHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743          215 SSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESD-----IISKIKAEALVLRHTNEDLSKQVEGL  287 (679)
Q Consensus       215 ~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~-----~Va~~~eE~~~LR~~Ne~L~~QlE~l  287 (679)
                      .+.....++..|.....+....-..+...|+.|+..+..|...|++-     ++..+-.=+|+.|+.|+++...+...
T Consensus       445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~A  522 (560)
T PF06160_consen  445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEA  522 (560)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence            33444444444444444444444555566666666555554443322     33345555677777777777766654

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.96  E-value=11  Score=38.83  Aligned_cols=18  Identities=22%  Similarity=0.311  Sum_probs=8.9

Q ss_pred             cccccccccchhcccccC
Q 005743           82 VASHSRVKRSLIGDLACS   99 (679)
Q Consensus        82 ~~~~~r~~~~l~~dl~~~   99 (679)
                      |.++-...-.+++.|.+|
T Consensus        36 lRsGPg~~y~Iv~~l~~G   53 (206)
T PRK10884         36 VRSGPGDQYRIVGTLNAG   53 (206)
T ss_pred             EEcCCCCCCceEEEEcCC
Confidence            333334444556665554

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=81.89  E-value=43  Score=35.02  Aligned_cols=43  Identities=9%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHH
Q 005743          152 KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAA  194 (679)
Q Consensus       152 KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e  194 (679)
                      ++.+. +.++...+..-.+.-..|..++..++.+..+++.++..
T Consensus        34 rd~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~   77 (225)
T COG1842          34 RDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAEL   77 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56555 66666666666677777788888888888887776543

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=81.85  E-value=50  Score=34.43  Aligned_cols=38  Identities=13%  Similarity=0.244  Sum_probs=23.3

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT  252 (679)
Q Consensus       213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~  252 (679)
                      ...+++-+.=+.|||..+  +..++..-.+-|..|+..+.
T Consensus       126 ~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~  163 (264)
T PF06008_consen  126 QRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLS  163 (264)
T ss_pred             HHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHH
Confidence            355666666666777664  66666666666666665443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=81.80  E-value=96  Score=35.50  Aligned_cols=39  Identities=18%  Similarity=0.206  Sum_probs=25.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT  252 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~  252 (679)
                      +.+..|+.+..+.+...++|......|...+.+++.+++
T Consensus       210 k~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         210 KTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            556666666666666666666666666666666665544

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=81.53  E-value=1.1e+02  Score=37.86  Aligned_cols=44  Identities=14%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             hccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743          210 NMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS  253 (679)
Q Consensus       210 ~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~  253 (679)
                      -.+++..+-|+.|+++|.|...+||-..-|-..|++.--.+.+.
T Consensus       312 gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~e  355 (1265)
T KOG0976|consen  312 GDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNE  355 (1265)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence            34568888899999999888888877665555554444433333

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=81.47  E-value=1.3e+02  Score=36.25  Aligned_cols=56  Identities=21%  Similarity=0.204  Sum_probs=28.9

Q ss_pred             hhhHHHhhhHHHHHHHHHHHHHHHhhhhhhh-hccchhhhhHHHHHHHHHHH------HHHHHHHHH
Q 005743          179 GMLEDEKTSLSEQLAALSVILERKNDNKNAI-NMGSSSSQNLEMEVVELRRL------NKELQMEKR  238 (679)
Q Consensus       179 ~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d-~e~e~~l~~LE~EV~ELRR~------NkeLQ~EKr  238 (679)
                      .+||.++-.|=++|.++-.-..    ++.++ .|.|++++.-|.++-|+++.      +.+||+|+.
T Consensus       170 tsLETqKlDLmaevSeLKLklt----alEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~k  232 (861)
T KOG1899|consen  170 TSLETQKLDLMAEVSELKLKLT----ALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETK  232 (861)
T ss_pred             hhHHHHHhHHHHHHHHhHHHHH----HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6677777666666665421100    11111 23345555566666666644      456666653

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.42  E-value=29  Score=38.64  Aligned_cols=6  Identities=33%  Similarity=0.578  Sum_probs=2.3

Q ss_pred             ccCCcc
Q 005743          323 KASSPN  328 (679)
Q Consensus       323 k~lSpk  328 (679)
                      ++|+|+
T Consensus        33 ~sL~P~   38 (365)
T KOG2391|consen   33 KSLRPK   38 (365)
T ss_pred             cccCcc
Confidence            334443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=81.37  E-value=42  Score=40.90  Aligned_cols=79  Identities=16%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----------Hhhhhhhh------hccchhhhhHHHHHHHHHHHHHH
Q 005743          169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILER----------KNDNKNAI------NMGSSSSQNLEMEVVELRRLNKE  232 (679)
Q Consensus       169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q----------~ee~~k~d------~e~e~~l~~LE~EV~ELRR~Nke  232 (679)
                      +|+..|++++...--++-.+++.|+++..+.+.          ++|-...|      .+.++.-.+||..+.|+......
T Consensus        24 ~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~  103 (769)
T PF05911_consen   24 AEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAE  103 (769)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466667777666666666666666666555552          11111111      12223333677777776666666


Q ss_pred             HHHHHHhhhhhhhhh
Q 005743          233 LQMEKRNLACKFSSM  247 (679)
Q Consensus       233 LQ~EKreL~~KL~sA  247 (679)
                      +--|+..|..-|..-
T Consensus       104 ~~~e~~~l~~~l~~~  118 (769)
T PF05911_consen  104 SAAENSALSKALQEK  118 (769)
T ss_pred             HHhhhHHHHHHHHHH
Confidence            666666655555443

The function of this family is unknown.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=81.01  E-value=95  Score=39.00  Aligned_cols=36  Identities=22%  Similarity=0.105  Sum_probs=24.2

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 005743          212 GSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSM  247 (679)
Q Consensus       212 ~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sA  247 (679)
                      ++....+||.++.|++...+..+.+-++-..|+..-
T Consensus       274 i~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~  309 (1072)
T KOG0979|consen  274 IEDKKEELESEKKETRSKISQKQRELNEALAKVQEK  309 (1072)
T ss_pred             hhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            357777777777777777777777766655444433

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=80.73  E-value=33  Score=37.00  Aligned_cols=56  Identities=23%  Similarity=0.183  Sum_probs=28.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE  285 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE  285 (679)
                      ..+.++|.....--..|.=|+-|..|--.=|+                -|-.+++|+.-||++=---.+|-|
T Consensus       133 ~sleDfeqrLnqAIErnAfLESELdEke~lle----------------svqRLkdEardlrqelavr~kq~E  188 (333)
T KOG1853|consen  133 YSLEDFEQRLNQAIERNAFLESELDEKEVLLE----------------SVQRLKDEARDLRQELAVRTKQTE  188 (333)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44556665544444455555544443222222                244778888888885433333333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=80.33  E-value=78  Score=32.95  Aligned_cols=130  Identities=19%  Similarity=0.184  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhh----------H
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTS----------L  188 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~r----------L  188 (679)
                      +.+|..|+..|..|++.--+-|..+...    +|.+- .-|-.+.++.-.+..+.+.-++..++++.+.          =
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK   82 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK   82 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677778777777776666666555555    22222 4444444444344444444444444333222          2


Q ss_pred             HHHHHHHHHHHHHH-hhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhh
Q 005743          189 SEQLAALSVILERK-NDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTS  253 (679)
Q Consensus       189 q~qv~e~~~~~~Q~-ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~  253 (679)
                      .+.|+....+++.. +.+..+-.-++..+..|+-+..=|...++-|.--.-.+..+++..+.+|..
T Consensus        83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~  148 (205)
T KOG1003|consen   83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKE  148 (205)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            23333333333321 222222222246666666666666666666665555555555555554443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=80.02  E-value=49  Score=38.90  Aligned_cols=64  Identities=22%  Similarity=0.172  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHhh-h------hchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743          134 LQESKEREFKLQAELSEW-K------RNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV  197 (679)
Q Consensus       134 V~eLqERE~kLE~ELlEy-K------EQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~  197 (679)
                      +..|..+-.+++.+|.+. +      ..|.+.+|+..+..-..++..++..+..++.+.+.+..++..+..
T Consensus       393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  463 (650)
T TIGR03185       393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK  463 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555444 1      112266666666666666666666666666666666655555443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	679
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	1e-05

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 9e-10
 Identities = 33/217 (15%), Positives = 90/217 (41%), Gaps = 19/217 (8%)

Query: 104  QVHPNSYQTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSE--WKRNP----KV 157
            Q H   +          + +       R ++ + + ++ K++A   E   K +     K+
Sbjct: 871  QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930

Query: 158  LELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQ 217
            ++L+R+++ +  E   ++ ++  LE   ++ +E+L +    L    +         +   
Sbjct: 931  MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT---NRVL 987

Query: 218  NLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTN 277
            +L+ E+ +LR+   + Q EK+ +       +++   L        +S++K +  +L+   
Sbjct: 988  SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL--------VSELKEQNTLLKTEK 1039

Query: 278  EDLSKQVEGLQMSRLNEVEELAYLRWVNSCLRDELQN 314
            E+L++++          +E+   L      L  +L +
Sbjct: 1040 EELNRRIHDQAKEITETMEKK--LVEETKQLELDLND 1074

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 93/627 (14%), Positives = 176/627 (28%), Gaps = 182/627 (29%)

Query: 136 ESKEREFK----LQAELSEWKRN---PKVLELERELEAKKIENDEIVRRVGMLEDEKTSL 188
           E+ E +++    L      +  N     V ++ + + +K+ E D I+         K ++
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIM-------SKDAV 61

Query: 189 SEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME 248
                 L   L  K +      +      N +  +  ++   ++  M  R    +   + 
Sbjct: 62  -SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 249 NQLTSLAKASES--DIISKIKAEALVLRHTNEDLS--------KQVEGLQMSRLNEVEEL 298
           N     AK + S      K++   L LR   +++         K    L +    +V+  
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 299 AYLR--WVN--SCLRDE-----LQNSCSTTNSEKASSPNTIEEIVENVGSLPNQNNKVLE 349
              +  W+N  +C   E     LQ      +    S  +    I   + S+  Q      
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAEL--- 234

Query: 350 YSGGRRLSFIKKFKK--------WPIASEEMSNLECQDNVLDKTWVQLEEGRSPRRRHSI 401
               RRL   K ++             +    NL C+  +L  T           R   +
Sbjct: 235 ----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--ILLTT-----------RFKQV 277

Query: 402 SGSNCRAEELMPNKRRQ------SDGFMCTKETEHEEESLSSQKYD---FDQRPQ----- 447
                  + L             S        T  E +SL  +  D    D   +     
Sbjct: 278 ------TDFLSAATTTHISLDHHSMTL-----TPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 448 ------FSA---------NRLEMNRNASVLEVEKRVLRVPNPPPRPSCGISGGTKEERQ- 491
                  +          +  +      +  + +  L V  P             E R+ 
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA------------EYRKM 374

Query: 492 ----------AQIPQPPPLPRPPPPPPAPKFSGKSTTGVVQRAPQVVEFYH--SLMKRDS 539
                     A IP    L                    V     VV   H  SL+++  
Sbjct: 375 FDRLSVFPPSAHIP-TILLSL---------IWFDVIKSDVM---VVVNKLHKYSLVEKQ- 420

Query: 540 RKDSSNG--GV-----CEAPNVANVRSSMIGEIENR----SSHLLAIKADVATQGEFVNS 588
            K+S+     +      +  N   +  S++          S  L+    D      F + 
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD----QYFYSH 476

Query: 589 LIREVNNAVYQNIEDVVAFVKWLDDELGFLVDERAVLKHFD--W--PEKKADTLREAAFG 644
           +   + N   ++ E +  F     D   FL      ++H    W       +TL      
Sbjct: 477 IGHHLKNI--EHPERMTLFRMVFLD-FRFL---EQKIRHDSTAWNASGSILNTL------ 524

Query: 645 YRDLKKLESEVSYYKDDP---RVPCDL 668
            + LK  +  +    +DP   R+   +
Sbjct: 525 -QQLKFYKPYIC--DNDPKYERLVNAI 548

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 52/369 (14%), Positives = 116/369 (31%), Gaps = 117/369 (31%)

Query: 40  RSSWGLKGFTVDKKTKSQTTATSKKLPLTTNSSDVTNQKNSIVASHSRVKRSLIG----- 94
           +++     F +  K           L LTT    VT+  ++   +H  +    +      
Sbjct: 254 QNAKAWNAFNLSCKI----------L-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 95  --------------DL---ACSMNPAQV---------HPNSYQTHRRQSSGSRDLFLELD 128
                         DL     + NP ++            ++   +  +       +E  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES- 361

Query: 129 SLRSLLQESKEREFKLQAELSEWKRN----PKVLELEREL--EAKKIENDEIVRRVGMLE 182
           SL  L      + F     LS +  +      +L L   +  +  K +   +V       
Sbjct: 362 SLNVLEPAEYRKMFD---RLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVV------- 408

Query: 183 DEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLAC 242
                   +L   S++ ++  ++  +I    S    L++++     L++ + ++  N+  
Sbjct: 409 -------NKLHKYSLVEKQPKESTISIP---SIYLELKVKLENEYALHRSI-VDHYNIPK 457

Query: 243 KFSSMENQLTSLAKASESD-IISKIKAEALVLRH-TNEDLSKQVEGLQMSRLNEVEELAY 300
            F S       L          S I        H  N +  +++   +M  L+       
Sbjct: 458 TFDS-----DDLIPPYLDQYFYSHIG------HHLKNIEHPERMTLFRMVFLD------- 499

Query: 301 LRWVNSCLRDELQNSCSTTNSEKASSPNTIEE-------IVENVGSLPNQNNKVLEYSGG 353
            R+    L  ++++  +  N+   S  NT+++       I +N            +Y   
Sbjct: 500 FRF----LEQKIRHDSTAWNA-SGSILNTLQQLKFYKPYICDNDP----------KYE-- 542

Query: 354 RRLSFIKKF 362
           R ++ I  F
Sbjct: 543 RLVNAILDF 551

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 126  ELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRVGMLEDEK 185
             +  L + L E +E+   L    ++ +    + ELE  L+ ++    E+ +    LE E 
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHES--MISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 186  TSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFS 245
            + L EQ+A L     +  + K  +       Q     + +          + R L    S
Sbjct: 1070 SDLHEQIAELQ---AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126

Query: 246  SMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE 285
             ++  L S   A      +K + +   L    E L  ++E
Sbjct: 1127 DLQEDLESEKAA-----RNKAEKQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 38/239 (15%), Positives = 85/239 (35%), Gaps = 12/239 (5%)

Query: 111  QTHRRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIE 170
            Q H +       L  +L +   L  E++E   +L A+  E +    + E+E  +E ++  
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE--ILHEMEARIEEEEER 942

Query: 171  NDEIVRRVGMLEDEKTSLSEQLAALSVILER----KNDNKNAINMGSSSSQNLEMEVVEL 226
            + ++      ++ +   L EQL       ++    K      I         +E +  +L
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002

Query: 227  RRLNKELQMEKRNLACKFSSMENQLTSLAKASES--DIISKIKAEALVLRHTNEDLSKQV 284
             +  K L+    +L    +  E +  +L K       +IS+++        + ++L K  
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062

Query: 285  EGLQMSRLNEVEELAYLRWVNSCLRDELQNSCSTTNSEKASSPNTIEEIVENVGSLPNQ 343
              L+     E  +L            EL+   +    E  ++   +E+      +   +
Sbjct: 1063 RKLE----GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 14/43 (32%)

Query: 632 EKKADTLREAAFGYRDLKKLESEVSYYKDDPRVPCDLALKKMV 674
           EK+A            LKKL++ +  Y DD   P  LA+K  +
Sbjct: 18  EKQA------------LKKLQASLKLYADD-SAPA-LAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	679
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.97
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.62
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.46
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.29
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.22
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.86
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.38
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.2
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.0
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.86
2v8f_C	26	MDIA1, profilin IIA; alternative splicing, protein	94.53
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	93.75
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.34
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	93.17
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.3
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	91.21
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	91.16
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	90.41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	88.77
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.53
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	87.13
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	85.97
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	85.87
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	85.0
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	84.03
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	83.83
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	83.72
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	83.68
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	83.56
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.15
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	83.1
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	82.37
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	81.88
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	81.06
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	80.76
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.34

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.97  E-value=0.033  Score=54.88  Aligned_cols=164  Identities=20%  Similarity=0.167  Sum_probs=76.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchhHHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743          121 RDLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPKVLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS  196 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~  196 (679)
                      .....||...+.....++.+-.-|+.+|.+|    +|.|+  ||+.+|......+..|..++..|..|...+.+.+....
T Consensus         6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~--ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~   83 (189)
T 2v71_A            6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEA--ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY   83 (189)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999    44443  44455544444444555555555444444433322111


Q ss_pred             HHHHHHhhhhhhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhcc---chhH--HHHHHHH
Q 005743          197 VILERKNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKA---SESD--IISKIKA  268 (679)
Q Consensus       197 ~~~~Q~ee~~k~d~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~---~Es~--~Va~~~e  268 (679)
                      .-..  .....-+.++   ......|-..+.+|-..|.+|+-..|....-|+..+++++..-..   =|++  .-..+++
T Consensus        84 ~e~~--~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~  161 (189)
T 2v71_A           84 AQSY--KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLV  161 (189)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000  0000001111   234455555566666667777777777666666666655432110   0111  1112334


Q ss_pred             HHHHhhhcChHHHHHHHHHh
Q 005743          269 EALVLRHTNEDLSKQVEGLQ  288 (679)
Q Consensus       269 E~~~LR~~Ne~L~~QlE~l~  288 (679)
                      ++.+||.+-.||...+.+++
T Consensus       162 ~~QRLkdE~rDLk~El~v~~  181 (189)
T 2v71_A          162 SVQRLKDEARDLRQELAVRE  181 (189)
T ss_dssp             CC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            44455555555555555544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.62  E-value=0.011  Score=70.76  Aligned_cols=65  Identities=18%  Similarity=0.371  Sum_probs=43.9

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHH
Q 005743          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVE  285 (679)
Q Consensus       213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE  285 (679)
                      +..+..|+.|+.+|+.....+..|+.+|..+++..+..+.        +.|+.+++|...||..-++|..++.
T Consensus       983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~--------~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A          983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE--------QLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999888777766653221        3455555565555555555553333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.46  E-value=0.59  Score=43.71  Aligned_cols=28  Identities=7%  Similarity=0.029  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743          124 FLELDSLRSLLQESKEREFKLQAELSEW  151 (679)
Q Consensus       124 ~~EI~~Lr~~V~eLqERE~kLE~ELlEy  151 (679)
                      ..+|+.+...+..|+.+-..|+.++..+
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~   39 (284)
T 1c1g_A           12 KLDKENALDRADEAEADKKAAEDRSKQL   39 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555544444444444444333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.29  E-value=0.0086  Score=71.74  Aligned_cols=75  Identities=27%  Similarity=0.190  Sum_probs=37.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743          122 DLFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALS  196 (679)
Q Consensus       122 ~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~  196 (679)
                      ....||..|+..+..|+++-..++.++.++    ...+. +.+++.+|.....++..+...+..|+.+...|++++.++.
T Consensus       854 ~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele  933 (1184)
T 1i84_S          854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME  933 (1184)
T ss_dssp             THHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666555555555444    11112 4444444444444444445555555555555555554443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.22  E-value=0.46  Score=47.68  Aligned_cols=38  Identities=16%  Similarity=0.165  Sum_probs=18.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~  251 (679)
                      .++..||.++.|+-.....++.+..++..+++..+..+
T Consensus       104 ~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l  141 (256)
T 3na7_A          104 ERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA  141 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555444444444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.86  E-value=0.37  Score=48.37  Aligned_cols=39  Identities=13%  Similarity=0.122  Sum_probs=26.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhh
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLT  252 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~  252 (679)
                      +.+..|..|+.-+.+....|+.+..++..+++..+..+.
T Consensus        90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~  128 (256)
T 3na7_A           90 RELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE  128 (256)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667777777777777777777777777766665543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.38  E-value=0.034  Score=66.66  Aligned_cols=33  Identities=12%  Similarity=0.050  Sum_probs=18.5

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005743          119 GSRDLFLELDSLRSLLQESKEREFKLQAELSEW  151 (679)
Q Consensus       119 ~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy  151 (679)
                      +...+..+|..|+..+..++.....|+.++..+
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L  890 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL  890 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666655555544555444444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.20  E-value=0.11  Score=62.28  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=40.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHhhhhhchHH
Q 005743          217 QNLEMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVE  296 (679)
Q Consensus       217 ~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvE  296 (679)
                      ..++.+|.+|...+.+|..+...+...++..|..+..+        -..+++.++.|+.+|..|..|++.+.......-+
T Consensus       980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~--------~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A          980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY--------KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444433222        1256677888888888888888887744444333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.00  E-value=0.37  Score=46.72  Aligned_cols=95  Identities=19%  Similarity=0.266  Sum_probs=68.8

Q ss_pred             HHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhh----hhccchhhhhHHHHHHHHHHHHHHHH
Q 005743          159 ELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNA----INMGSSSSQNLEMEVVELRRLNKELQ  234 (679)
Q Consensus       159 ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~----d~e~e~~l~~LE~EV~ELRR~NkeLQ  234 (679)
                      |+...+.....-+..|.-++..|+.....|+.+++.+-....|+......    -.+++.++..|..|+..+|-....++
T Consensus        38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~  117 (168)
T 3o0z_A           38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE  117 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334555666677777777777777777777777765543322    24557899999999999999999999


Q ss_pred             HHHHhhhhhhhhhHHHhhh
Q 005743          235 MEKRNLACKFSSMENQLTS  253 (679)
Q Consensus       235 ~EKreL~~KL~sAe~~~~~  253 (679)
                      .+++.|..|+..-|...++
T Consensus       118 ~e~r~L~Ekl~~lEKe~a~  136 (168)
T 3o0z_A          118 GERKEAQDMLNHSEKEKNN  136 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999888855443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.86  E-value=1  Score=59.66  Aligned_cols=51  Identities=20%  Similarity=0.240  Sum_probs=28.6

Q ss_pred             HHHHHHHHhhhcChHHHHHHHHHhhhhhchHHH-------HHHHHHHHHHHHHhhhhh
Q 005743          265 KIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEE-------LAYLRWVNSCLRDELQNS  315 (679)
Q Consensus       265 ~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEE-------LvylRwiNacLR~EL~d~  315 (679)
                      .+..-++.|-.+++.=..+++.|......-+..       +.|+.-.+.-.|.++.+.
T Consensus      2074 rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~ 2131 (3245)
T 3vkg_A         2074 RSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRK 2131 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            344555566666666666666666665555444       226544454556665443

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=93.75  E-value=0.011  Score=61.76  Aligned_cols=20  Identities=15%  Similarity=0.343  Sum_probs=12.9

Q ss_pred             cCCcchhHHHHhhc-CCCccc
Q 005743          351 SGGRRLSFIKKFKK-WPIASE  370 (679)
Q Consensus       351 s~sKk~~li~KLKk-W~~~ke  370 (679)
                      +.||.+....++=+ |.-+.+
T Consensus       268 ~~s~~~e~A~~fl~~~l~s~e  288 (449)
T 3iot_A          268 AASPNKELAKEFLENYLLTDE  288 (449)
T ss_dssp             TTCSCHHHHHHHHHHTTSSHH
T ss_pred             CCCCCHHHHHHHHHHHhcCHH
Confidence            34677777777765 765544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.34  E-value=0.59  Score=50.77  Aligned_cols=39  Identities=21%  Similarity=0.171  Sum_probs=25.8

Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743          213 SSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (679)
Q Consensus       213 e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~  251 (679)
                      ++.+.+||....+.++...+|+.|+..+..++...+..+
T Consensus       543 ~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~  581 (597)
T 3oja_B          543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK  581 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355666666677777777777777777666666665544

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=93.17  E-value=3.1  Score=41.02  Aligned_cols=74  Identities=19%  Similarity=0.194  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~  249 (679)
                      +|.-+..++.-|+..+.+|..++-.+-.=..+      ...+....+..|+.|+..||..+..|+...|+|-+.-|..|.
T Consensus        50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~------~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr  123 (189)
T 2v71_A           50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEH------QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER  123 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            45555555555555555555444333211110      001223456777777777777777777777777777776664

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.11  E-value=3.7  Score=54.50  Aligned_cols=52  Identities=21%  Similarity=0.218  Sum_probs=23.5

Q ss_pred             cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhchh---HHHHHHHHHHhH
Q 005743          114 RRQSSGSRDLFLELDSLRSLLQESKEREFKLQAELSEW-----KRNPK---VLELERELEAKK  168 (679)
Q Consensus       114 r~~~~~~~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEy-----KEQE~---I~ELqrqL~~k~  168 (679)
                      |++...+..+-.=|...+.+   |.++...++.+..+|     |=.|+   |.+||.+|..+.
T Consensus      1888 R~~yvTP~syLeli~~y~~l---l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~ 1947 (3245)
T 3vkg_A         1888 RQNYVTPRHYLDFINQVVLL---INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN 1947 (3245)
T ss_dssp             CCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555554444444333   344444444444444     22232   666655555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.30  E-value=1.5  Score=47.70  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHH
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALS  196 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~  196 (679)
                      ++..+...|..|+++....+..+....
T Consensus       457 e~~~~~~~i~~l~~~~~~~~~~l~~~~  483 (597)
T 3oja_B          457 EVNELRAEVQQLTNEQIQQEQLLQGLH  483 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555544444333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=91.21  E-value=6.5  Score=35.86  Aligned_cols=84  Identities=20%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH----HhhhhhhhhccchhhhhHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER----KNDNKNAINMGSSSSQNLEMEVVELRRLNKE  232 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q----~ee~~k~d~e~e~~l~~LE~EV~ELRR~Nke  232 (679)
                      +..|+..|.........|..+...|..+.+.|+.++..-......    .....++..+++..+++|+..+.+....|..
T Consensus        22 l~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~  101 (129)
T 2fxo_A           22 FTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAE  101 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555566666666777777777777776543333221    1222333444556666666666666666666


Q ss_pred             HHHHHHhh
Q 005743          233 LQMEKRNL  240 (679)
Q Consensus       233 LQ~EKreL  240 (679)
                      |+.+|+.|
T Consensus       102 L~~~kkkl  109 (129)
T 2fxo_A          102 LTAKKRKL  109 (129)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66555554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=91.16  E-value=3.8  Score=37.44  Aligned_cols=75  Identities=17%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005743          157 VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQME  236 (679)
Q Consensus       157 I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~E  236 (679)
                      ...|+.+|+.....+....-....|.+....|+..+.+.                 +.++.+.|....+|-..-+.|+.+
T Consensus        50 k~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-----------------~~rleeeee~~~~L~~~kkkle~e  112 (129)
T 2fxo_A           50 KNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-----------------NKRLEDEEEMNAELTAKKRKLEDE  112 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555544444444444444444444444444433                 333444444444444444444444


Q ss_pred             HHhhhhhhhhhH
Q 005743          237 KRNLACKFSSME  248 (679)
Q Consensus       237 KreL~~KL~sAe  248 (679)
                      ..+|...|+..+
T Consensus       113 ~~~Lk~~led~e  124 (129)
T 2fxo_A          113 CSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=90.41  E-value=0.051  Score=55.81  Aligned_cols=6  Identities=17%  Similarity=0.440  Sum_probs=2.6

Q ss_pred             hccccc
Q 005743           93 IGDLAC   98 (679)
Q Consensus        93 ~~dl~~   98 (679)
                      +.||+.
T Consensus        78 iaDll~   83 (448)
T 2z73_A           78 FSDFTF   83 (448)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.77  E-value=3.3  Score=44.21  Aligned_cols=30  Identities=13%  Similarity=0.113  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005743          220 EMEVVELRRLNKELQMEKRNLACKFSSMEN  249 (679)
Q Consensus       220 E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~  249 (679)
                      -.++..|++.|.+|+.+.+++-.+++.|.+
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (487)
T 3oja_A          441 QHKETQLAEENARLKKLNGEADLALASANA  470 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence            334445555555555555555555555543

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.53  E-value=13  Score=35.56  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=15.4

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILE  200 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~  200 (679)
                      ++..|...+.....+.++|.+.+.+-...+.
T Consensus        45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~   75 (154)
T 2ocy_A           45 DYNTLKRELSDRDDEVKRLREDIAKENELRT   75 (154)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            3333444445555666666555554444433

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=87.13  E-value=3  Score=36.06  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccc-hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGS-SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e-~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      ||.-|..+|..+..++.+|.-++-........    .+.+.|-| ..-..+|.+++-||+-..++-+-+-+|-.|+++..
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~ed----fk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~   76 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMR----LREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ   76 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            35566777777777777777666655444432    01111111 23368999999999999999999999888777664

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=85.97  E-value=2.1  Score=36.96  Aligned_cols=81  Identities=19%  Similarity=0.282  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHH--HHHHHHHHHhhhcChHHHHHHHHHhhhhhchHHHHH
Q 005743          222 EVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDII--SKIKAEALVLRHTNEDLSKQVEGLQMSRLNEVEELA  299 (679)
Q Consensus       222 EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~V--a~~~eE~~~LR~~Ne~L~~QlE~l~~~Re~dvEELv  299 (679)
                      |+.+||+....+..+|.-|...++.++..+.-+-.--|+++.  ..++.+...||..=+++.-.--.|+..=++-.+||.
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~   80 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA   80 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999888888888766655444455433  356667777776665555444455555555566777


Q ss_pred             HHH
Q 005743          300 YLR  302 (679)
Q Consensus       300 ylR  302 (679)
                      |||
T Consensus        81 fLk   83 (86)
T 3swk_A           81 FLK   83 (86)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            754

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=85.87  E-value=27  Score=33.93  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhchh-HHHHHHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHH
Q 005743          123 LFLELDSLRSLLQESKEREFKLQAELSEW----KRNPK-VLELERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSV  197 (679)
Q Consensus       123 ~~~EI~~Lr~~V~eLqERE~kLE~ELlEy----KEQE~-I~ELqrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~  197 (679)
                      ++..|+-+...++.--+-..+|--...|+    .-+|. ++||+-.+..-...-+.|.+.+..||+....=........-
T Consensus        11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se   90 (168)
T 3o0z_A           11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE   90 (168)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666665555555555444455    55566 78888777766666666666666666553322221111111


Q ss_pred             HHHH-Hhhhhhhhhcc---chhhhhHHHHHHHHHHHHHHHHHHHHhhh----hhhhhhHHHh
Q 005743          198 ILER-KNDNKNAINMG---SSSSQNLEMEVVELRRLNKELQMEKRNLA----CKFSSMENQL  251 (679)
Q Consensus       198 ~~~Q-~ee~~k~d~e~---e~~l~~LE~EV~ELRR~NkeLQ~EKreL~----~KL~sAe~~~  251 (679)
                      .... +....--..|+   ..++..++.+...|--....|+.++..+-    .+|.+++..+
T Consensus        91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~  152 (168)
T 3o0z_A           91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRL  152 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            1110 00000011122   26667777777777777777777777776    6677777655

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.00  E-value=7.3  Score=34.82  Aligned_cols=84  Identities=17%  Similarity=0.259  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      .++.-|..++...+.+..+|++.+.+-...+.          .++.....++.|+++|-.+.                  
T Consensus        12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~----------~aE~~~~~ie~ElEeLTasL------------------   63 (97)
T 2eqb_B           12 EDYNTLKRELSDRDDEVKRLREDIAKENELRT----------KAEEEADKLNKEVEDLTASL------------------   63 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH------------------
Confidence            34444445555555555555554443322222          23455566666766654332                  


Q ss_pred             HHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHH
Q 005743          249 NQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGL  287 (679)
Q Consensus       249 ~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l  287 (679)
                           +.  --+.||+.++.+...+-..|+.|..||..-
T Consensus        64 -----Fe--EAN~MVa~ar~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           64 -----FD--EANNMVADARKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             -----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                 11  135699999999998999999999888653

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=84.03  E-value=3.2  Score=37.30  Aligned_cols=52  Identities=29%  Similarity=0.364  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKR  238 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKr  238 (679)
                      +-..|...++.|+.|+++|+.+-...                 -.++++|+.||..||+.|..|-.|+.
T Consensus        38 EYl~LE~~~s~le~e~~rlr~~~~~~-----------------~~~v~eLe~everL~~ENq~L~~e~~   89 (104)
T 3s9g_A           38 EYLELEKSLSRMEDENNRLRLESKRL-----------------DARVRELELELDRLRAENLQLLTENE   89 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778888899999999998764332                 35678999999999999999988764

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=83.83  E-value=4  Score=35.40  Aligned_cols=56  Identities=20%  Similarity=0.307  Sum_probs=33.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhHhHHHHHHHHH
Q 005743          121 RDLFLELDSLRSLLQESKEREFKLQAELSEWKRNPKVLELERELEAKKIENDEIVRRV  178 (679)
Q Consensus       121 ~~~~~EI~~Lr~~V~eLqERE~kLE~ELlEyKEQE~I~ELqrqL~~k~~Ei~~Lk~kI  178 (679)
                      .++-+||..||..|.+|+....--|-.|.--|  +.|..||.+|..+.++|..|.-++
T Consensus        22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK--~El~~Lq~qLe~kd~ei~rL~~~l   77 (81)
T 3qh9_A           22 EELLQELRHLKIKVEELENERNQYEWKLKATK--AEVAQLQEQVALKDAEIERLHSQL   77 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhhHHHHHHHHHHH
Confidence            36788999999888887765544433333323  115566666666666655555443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=83.72  E-value=2.9  Score=38.09  Aligned_cols=61  Identities=25%  Similarity=0.224  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhhccchhHHHHHHHHHHHHhhhcChHHHHHHHHHh
Q 005743          220 EMEVVELRRLNKELQMEKRNLACKFSSMENQLTSLAKASESDIISKIKAEALVLRHTNEDLSKQVEGLQ  288 (679)
Q Consensus       220 E~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~~~~~~~~Es~~Va~~~eE~~~LR~~Ne~L~~QlE~l~  288 (679)
                      |.-..+|+..|..|.+|..++..||..+....++        .+..++.|++.||..|+.|...|..|.
T Consensus         2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--------~~~~Lq~El~~lr~~~~~l~~~iReLE   62 (111)
T 2v66_B            2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK--------QVSVLEDDLSQTRAIKEQLHKYVRELE   62 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999998765543        244788999999999999988776664

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=83.68  E-value=4.4  Score=35.34  Aligned_cols=41  Identities=10%  Similarity=0.157  Sum_probs=28.1

Q ss_pred             HHHHHHhHhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743          161 ERELEAKKIENDEIVRRVGMLEDEKTSLSEQLAALSVILER  201 (679)
Q Consensus       161 qrqL~~k~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q  201 (679)
                      +.+++...++.-.|.+++..|..+...|+.++.++..+.+.
T Consensus         5 ~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~e   45 (117)
T 2zqm_A            5 PPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDE   45 (117)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555556677777777777777777777777777766663

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=83.56  E-value=10  Score=33.10  Aligned_cols=67  Identities=22%  Similarity=0.318  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005743          170 ENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQN-LEMEVVELRRLNKELQMEKRNLACKFSSME  248 (679)
Q Consensus       170 Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~-LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe  248 (679)
                      .+--+=-+|-.||.+|..|+.++..+..   +  ..        ..+.. .|.++.+||+....+..+|..|...++..+
T Consensus        17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~---~--~~--------~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~   83 (93)
T 3s4r_A           17 RFANLIDKVRFLEQQNKILLAELEQLKG---Q--GK--------SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA   83 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh---c--cC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556788888888888887755431   1  11        12223 588999999999999999998887777654


Q ss_pred             H
Q 005743          249 N  249 (679)
Q Consensus       249 ~  249 (679)
                      .
T Consensus        84 ~   84 (93)
T 3s4r_A           84 E   84 (93)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=83.10  E-value=12  Score=33.00  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743          171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ  250 (679)
Q Consensus       171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~  250 (679)
                      .+.++.++..|+.+.....+.+.++-.-.++          .+.+...+|.||..|.+.+..|+.+...+..+|..|..+
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~----------~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k   73 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKA----------AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS   73 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888877777666554433321          235566788888888888888888888877788777665


Q ss_pred             hh
Q 005743          251 LT  252 (679)
Q Consensus       251 ~~  252 (679)
                      +.
T Consensus        74 Le   75 (101)
T 3u1c_A           74 LL   75 (101)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=82.37  E-value=13  Score=32.48  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=49.0

Q ss_pred             HHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 005743          171 NDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQ  250 (679)
Q Consensus       171 i~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~  250 (679)
                      .+..+.++..|+.+.....+.+.++-.-.++          .+.+...+|.||..|.+.+..|+.+......+|..+...
T Consensus         4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~----------~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k   73 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQ----------AEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK   73 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888777776666554433332          234556677888888888888888888777777777655


Q ss_pred             h
Q 005743          251 L  251 (679)
Q Consensus       251 ~  251 (679)
                      +
T Consensus        74 L   74 (101)
T 3u59_A           74 L   74 (101)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=81.88  E-value=7.1  Score=35.86  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=35.5

Q ss_pred             HhHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHhhhhhhhhccchhhhhHHHHHHHHHHH-------HHHHHHHHHhh
Q 005743          168 KIENDEIVRRVGMLEDEKTSLSEQLAALSVILERKNDNKNAINMGSSSSQNLEMEVVELRRL-------NKELQMEKRNL  240 (679)
Q Consensus       168 ~~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q~ee~~k~d~e~e~~l~~LE~EV~ELRR~-------NkeLQ~EKreL  240 (679)
                      ...|+.|++.|..|..+.+++..+..   .++.          .+..++..||.|..+=|..       |..|.+|..+|
T Consensus        14 D~~Ie~Lkreie~lk~ele~l~~E~q---~~v~----------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l   80 (120)
T 3i00_A           14 DHLIERLYREISGLKAQLENMKTESQ---RVVL----------QLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL   80 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788888888777776643322   2221          2345667777777776655       44455555544

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=81.06  E-value=39  Score=32.24  Aligned_cols=38  Identities=11%  Similarity=0.042  Sum_probs=18.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHh
Q 005743          214 SSSQNLEMEVVELRRLNKELQMEKRNLACKFSSMENQL  251 (679)
Q Consensus       214 ~~l~~LE~EV~ELRR~NkeLQ~EKreL~~KL~sAe~~~  251 (679)
                      .++++.|..+..--|....||.+..+|-.+|..+...+
T Consensus        84 ~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~  121 (155)
T 2efr_A           84 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKY  121 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444455555555555555555444443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=80.76  E-value=2.2  Score=38.25  Aligned_cols=33  Identities=36%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHH
Q 005743          169 IENDEIVRRVGMLEDEKTSLSEQLAALSVILER  201 (679)
Q Consensus       169 ~Ei~~Lk~kI~sLEaE~~rLq~qv~e~~~~~~Q  201 (679)
                      .++..|..+|.+|+.|+.+|..++..+-.-.++
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~   44 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER   44 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999988777765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00