Citrus Sinensis ID: 005754
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 679 | 2.2.26 [Sep-21-2011] | |||||||
| Q84TH5 | 662 | ABC transporter G family | yes | no | 0.963 | 0.987 | 0.607 | 0.0 | |
| Q9C6W5 | 648 | ABC transporter G family | no | no | 0.879 | 0.921 | 0.489 | 1e-172 | |
| Q9SZR9 | 638 | ABC transporter G family | no | no | 0.876 | 0.932 | 0.497 | 1e-157 | |
| Q7XA72 | 672 | ABC transporter G family | no | no | 0.902 | 0.912 | 0.467 | 1e-156 | |
| Q93YS4 | 751 | ABC transporter G family | no | no | 0.907 | 0.820 | 0.428 | 1e-152 | |
| Q9FT51 | 737 | ABC transporter G family | no | no | 0.871 | 0.803 | 0.412 | 1e-152 | |
| Q9LK50 | 685 | ABC transporter G family | no | no | 0.936 | 0.928 | 0.368 | 1e-119 | |
| Q9ZU35 | 725 | ABC transporter G family | no | no | 0.782 | 0.732 | 0.322 | 1e-76 | |
| P10090 | 687 | Protein white OS=Drosophi | yes | no | 0.854 | 0.844 | 0.315 | 5e-75 | |
| Q8MIB3 | 656 | ATP-binding cassette sub- | yes | no | 0.787 | 0.815 | 0.318 | 2e-74 |
| >sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/685 (60%), Positives = 512/685 (74%), Gaps = 31/685 (4%)
Query: 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENK 60
M FD VE P S D R LL SSC+PITLKF+DVCYR+KI
Sbjct: 1 MSAFDGVENQMNGPDSSPRLSQDPREPRSLLS------SSCFPITLKFVDVCYRVKIHGM 54
Query: 61 SKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120
S + + +++ S + T +ERTIL+G+TGM+SPGE +A+LGPSGSGKST+
Sbjct: 55 SNDSCNIKKLLGLKQKPSDE----TRSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTL 110
Query: 121 LNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180
LN +AGRLH G LTG IL N+ K TK KRTGFV QDD+LYPHLTVRETLVF +LLRL
Sbjct: 111 LNAVAGRLH-GSNLTGKILINDGKITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRL 169
Query: 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240
PR+L+ K AE+V++ELGLTKCENT++GN+FIRGISGGERKRVSIAHE+LINPSLL+
Sbjct: 170 PRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLV 229
Query: 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299
LDEPTSGLD+TAA RLV TL L +GKT+VTS+HQPSSRV+QMFD VL+LSEG+CL+
Sbjct: 230 LDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFV 289
Query: 300 GKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLL 359
GKG +AM+YFESVGFSP+FPMNPADFLLDLANGV DGV+EREKPNV+ ++V +Y+TLL
Sbjct: 290 GKGRDAMAYFESVGFSPAFPMNPADFLLDLANGVCQTDGVTEREKPNVRQTLVTAYDTLL 349
Query: 360 APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIG-FATWLNQFSILLHRS 418
AP+V+ C+E + P+ A TR + + ATW +Q ILLHR
Sbjct: 350 APQVKT-CIEVSHFPQDNARFV-----------KTRVNGGGITTCIATWFSQLCILLHRL 397
Query: 419 LKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVF 478
LKER+HES + LR+FQV+AAS+L G+MWWHSD+R+V DRLGL FFIS+FWGVLPS NAVF
Sbjct: 398 LKERRHESFDLLRIFQVVAASILCGLMWWHSDYRDVHDRLGLLFFISIFWGVLPSFNAVF 457
Query: 479 AFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFV 538
FPQERAIF +ERASGMYTLSSYFM+ ++G L +EL+LP FL YWM +P + F+
Sbjct: 458 TFPQERAIFTRERASGMYTLSSYFMAHVLGSLSMELVLPASFLTFTYWMVYLRPGIVPFL 517
Query: 539 QTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIK 598
TL VLL YVL SQGLGLALGA IMDAK+ASTIVTVTMLAFVLTGGYYV+K+PS + W+K
Sbjct: 518 LTLSVLLLYVLASQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGYYVNKVPSGMVWMK 577
Query: 599 YISSTYYNYRLLINVQYGDGKKISYLLGCFDRHG-----SSRDASCKFVEEDIVGQISPL 653
Y+S+T+Y YRLL+ +QYG G++I +LGC D G ++ A C+FVEE+++G +
Sbjct: 578 YVSTTFYCYRLLVAIQYGSGEEILRMLGC-DSKGKQGASAATSAGCRFVEEEVIGDVGMW 636
Query: 654 VSIGAFLSMFVGYRLLAYLALRRLK 678
S+G MF GYR+LAYLALRR+K
Sbjct: 637 TSVGVLFLMFFGYRVLAYLALRRIK 661
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1558), Expect = e-172, Method: Compositional matrix adjust.
Identities = 319/652 (48%), Positives = 429/652 (65%), Gaps = 55/652 (8%)
Query: 35 PSLMSSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTIL 94
P L S YPITLKF +V Y++KIE S+ S+ K +E+TIL
Sbjct: 42 PGLQMSMYPITLKFEEVVYKVKIEQTSQCMGSW-------------------KSKEKTIL 82
Query: 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTG 154
NGITGMV PGE LA+LGPSGSGK+T+L+ L GRL + +G ++ N + I +RTG
Sbjct: 83 NGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKT--FSGKVMYNGQPFSGCIKRRTG 140
Query: 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSF 214
FV QDD+LYPHLTV ETL F +LLRLP +L+ EK + V+AELGL +C N++IG
Sbjct: 141 FVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPL 200
Query: 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
RGISGGE+KRVSI EMLINPSLL+LDEPTSGLDST A+R+V+T+ L G+T+VT++
Sbjct: 201 FRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTI 260
Query: 275 HQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVY 334
HQPSSR+Y MFDKV++LSEG +Y+G S A+ YF S+GFS S +NPAD LLDLANG+
Sbjct: 261 HQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLDLANGIP 320
Query: 335 --HLDGVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEE 392
SE+E+ VK ++V++Y ++ K++A A SHS E
Sbjct: 321 PDTQKETSEQEQKTVKETLVSAYEKNISTKLKAELCNA---------------ESHSYE- 364
Query: 393 HTRSHNNNVIG---FATWLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGIMWWHS 449
+T++ N+ TW QF++LL R ++ER+ ES N LR+FQVI+ + L G++WWH+
Sbjct: 365 YTKAAAKNLKSEQWCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLGGLLWWHT 424
Query: 450 DFREVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGD 509
+QDR L FF SVFWG P NAVF FPQE+ + +KER+SGMY LSSYFM+R +GD
Sbjct: 425 PKSHIQDRTALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGD 484
Query: 510 LPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQAS 569
LP+EL LPT F+ IIYWM G KP+ F+ +LLV+L VLV+QGLGLA GA++M+ KQA+
Sbjct: 485 LPLELALPTAFVFIIYWMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQAT 544
Query: 570 TIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD 629
T+ +VT L F++ GGYYV ++P I W+KY+S +YY Y+LL+ +QY D D
Sbjct: 545 TLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYTDD----------D 594
Query: 630 RHGSSRDASCK---FVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678
+ S+ C+ F +G + + + M VGYRL+AY+AL R+K
Sbjct: 595 YYECSKGVWCRVGDFPAIKSMGLNNLWIDVFVMGVMLVGYRLMAYMALHRVK 646
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/639 (49%), Positives = 416/639 (65%), Gaps = 44/639 (6%)
Query: 43 PITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVS 102
P+TLKF ++ Y +K+++ ++G D K +ERTIL G+TG+V
Sbjct: 34 PVTLKFENLVYTVKLKD------------SQGCFGKND------KTEERTILKGLTGIVK 75
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHG-LTGTILTNNNKPTKHISKRTGFVTQDDI 161
PGEILA+LGPSGSGK+++L L GR+ +G G LTG I NN +K + + TGFVTQDD
Sbjct: 76 PGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPLSKAVKRTTGFVTQDDA 135
Query: 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGG 221
LYP+LTV ETLVF +LLRLP + +EK A+AVM ELGL +C++TIIG F+RG+SGG
Sbjct: 136 LYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGG 195
Query: 222 ERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV 281
ERKRVSI E+LINPSLL LDEPTSGLDST A R+VS L L + G+T+VT++HQPSSR+
Sbjct: 196 ERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPSSRL 255
Query: 282 YQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFP-MNPADFLLDLANGVYHLDGVS 340
+ MFDK+L+LSEG +YFG GS AM YF SVG+SP +NP+DFLLD+ANGV G
Sbjct: 256 FYMFDKLLLLSEGNPVYFGLGSNAMDYFASVGYSPLVERINPSDFLLDIANGV----GSD 311
Query: 341 EREKPN-VKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNN 399
E ++P +K+++VA Y T L V + G + E +R N
Sbjct: 312 ESQRPEAMKAALVAFYKTNLLDSVINE-------------VKGQDDLCNKPRESSRVATN 358
Query: 400 NVIGF-ATWLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRL 458
+ TW QF +LL R LK+R+H+S + ++V Q+ S L G++WW + +QD++
Sbjct: 359 TYGDWPTTWWQQFCVLLKRGLKQRRHDSFSGMKVAQIFIVSFLCGLLWWQTKISRLQDQI 418
Query: 459 GLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPT 518
GL FFIS FW P +F FPQERA+ KER+SGMY LS YF+SR++GDLP+ELILPT
Sbjct: 419 GLLFFISSFWAFFPLFQQIFTFPQERAMLQKERSSGMYRLSPYFLSRVVGDLPMELILPT 478
Query: 519 VFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLA 578
FL+I YWM G F TLLVLL +VLVS GLGLALGA++MD K A+T+ +V ML
Sbjct: 479 CFLVITYWMAGLNHNLANFFVTLLVLLVHVLVSGGLGLALGALVMDQKSATTLGSVIMLT 538
Query: 579 FVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDAS 638
F+L GGYYV +P I+WIKY+S YY Y+LLI QY + L C D +G R
Sbjct: 539 FLLAGGYYVQHVPVFISWIKYVSIGYYTYKLLILGQYTANE----LYPCGD-NGKLRCHV 593
Query: 639 CKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRL 677
F +G S LVS A +M V YR++AY+AL R+
Sbjct: 594 GDFEGIKHIGFNSGLVSALALTAMLVVYRVIAYIALTRI 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust.
Identities = 319/682 (46%), Positives = 437/682 (64%), Gaps = 69/682 (10%)
Query: 17 CPYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGST 76
C ND Q L S PI LKF ++ Y IK +++ +GS +
Sbjct: 39 CLDDDNDHDGPSHQSRQSSVLRQSLRPIILKFEELTYSIK--SQTGKGSYWF-------- 88
Query: 77 SSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTG 136
GS R +L ++G+V PGE+LA+LGPSGSGK+T++ LAGRL QG L+G
Sbjct: 89 ------GSQEPKPNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRL-QGK-LSG 140
Query: 137 TILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV 196
T+ N T + ++TGFVTQDD+LYPHLTV ETL + +LLRLP+ L+ KEK E V
Sbjct: 141 TVSYNGEPFTSSVKRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMV 200
Query: 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+++LGLT+C N++IG IRGISGGERKRVSI EML+NPSLL+LDEPTSGLDST A R+
Sbjct: 201 VSDLGLTRCCNSVIGGGLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARI 260
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSP 316
V+TL SL + G+T+VT++HQPSSR+Y+MFDKVLVLSEG +Y G M YF S+G+ P
Sbjct: 261 VATLRSLARGGRTVVTTIHQPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQP 320
Query: 317 --SFPMNPADFLLDLANGV---------YHLDGVSER--EKPNVKSSIVASYNTLLAPKV 363
SF +NPADF+LDLANG+ +G +R E+ +VK S+++SY L P +
Sbjct: 321 GSSF-VNPADFVLDLANGITSDTKQYDQIETNGRLDRLEEQNSVKQSLISSYKKNLYPPL 379
Query: 364 RAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKERK 423
+ + T P+ + ++ ++ N +W QFS+LL R LKER
Sbjct: 380 KEEV--SRTFPQDQT----------NARLRKKAITNRWP--TSWWMQFSVLLKRGLKERS 425
Query: 424 HESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAFPQE 483
HES + LR+F V++ SLLSG++WWHS +QD++GL FF S+FWG P NA+F FPQE
Sbjct: 426 HESFSGLRIFMVMSVSLLSGLLWWHSRVAHLQDQVGLLFFFSIFWGFFPLFNAIFTFPQE 485
Query: 484 RAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLV 543
R + +KER+SG+Y LSSY+++R +GDLP+ELILPT+F+ I YWM G KP F+ TL++
Sbjct: 486 RPMLIKERSSGIYRLSSYYIARTVGDLPMELILPTIFVTITYWMGGLKPSLTTFIMTLMI 545
Query: 544 LLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISST 603
+L VLV+QG+GLALGAI+MDAK+A+T+ +V ML F+L GGYY+ +P IAW+KY+S +
Sbjct: 546 VLYNVLVAQGVGLALGAILMDAKKAATLSSVLMLVFLLAGGYYIQHIPGFIAWLKYVSFS 605
Query: 604 YYNYRLLINVQY--------GDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVS 655
+Y Y+LL+ VQY G G S + D G ++ +G + +
Sbjct: 606 HYCYKLLVGVQYTWDEVYECGSGLHCSVM----DYEG---------IKNLRIGNM--MWD 650
Query: 656 IGAFLSMFVGYRLLAYLALRRL 677
+ A M + YR+LAYLALR L
Sbjct: 651 VLALAVMLLLYRVLAYLALRNL 672
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 540 bits (1390), Expect = e-152, Method: Compositional matrix adjust.
Identities = 298/696 (42%), Positives = 430/696 (61%), Gaps = 80/696 (11%)
Query: 4 FDSVETPNGDLTDC-PYQSNDCSPAR-DLLHQLPSLMSS-CYPITLKFIDVCYRIKIENK 60
F P +++D P+ ++ P + + P + PI LKF DV Y++ I+
Sbjct: 112 FTGFAMPPEEISDSKPFSDDEMIPEDIEAGKKKPKFQAEPTLPIFLKFRDVTYKVVIKKL 171
Query: 61 SKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120
TSS E+ IL GI+G V+PGE+LA++GPSGSGK+T+
Sbjct: 172 ---------------TSSV----------EKEILTGISGSVNPGEVLALMGPSGSGKTTL 206
Query: 121 LNVLAGRLHQGHGLTGTILTNNNKP-TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179
L++LAGR+ Q TG +T N+KP +K++ + GFVTQDD+L+PHLTV+ETL + + LR
Sbjct: 207 LSLLAGRISQSS--TGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLR 264
Query: 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239
LP+TL+ ++K A V+ ELGL +C++T+IG +F+RG+SGGERKRVSI +E++INPSLL
Sbjct: 265 LPKTLTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLL 324
Query: 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299
+LDEPTSGLDST A R + L + + GKT++T++HQPSSR++ FDK+++L G LYF
Sbjct: 325 LLDEPTSGLDSTTALRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYF 384
Query: 300 GKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYH-------LD-----GVSEREKPNV 347
GK SEA+ YF S+G SP MNPA+FLLDLANG + LD G S RE
Sbjct: 385 GKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGNINDISVPSELDDRVQVGNSGRETQTG 444
Query: 348 KSSIVASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFAT 406
K S A + L+ A + R A E ++ LL + + TR + T
Sbjct: 445 KPSPAAVHEYLVEAYETRVAEQE------KKKLLDPVPLDEEAKAKSTRLKRQ----WGT 494
Query: 407 -WLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGIMWWHSDFRE---VQDRLGLFF 462
W Q+ IL R LKER+HE + LRV QV++ +++ G++WW SD R +QD+ GL F
Sbjct: 495 CWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQSDIRTPMGLQDQAGLLF 554
Query: 463 FISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLI 522
FI+VFWG P A+FAFPQERA+ KERA+ MY LS+YF++R DLP++ ILP++FL+
Sbjct: 555 FIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDFILPSLFLL 614
Query: 523 IIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLT 582
++Y+MTG + F ++L + ++ +QGLGLA+GAI+MD K+A+T+ +VT++ F+L
Sbjct: 615 VVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLKKATTLASVTVMTFMLA 674
Query: 583 GGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFV 642
GG++V K+P I+WI+Y+S Y+ Y+LL+ VQY D +G D
Sbjct: 675 GGFFVKKVPVFISWIRYLSFNYHTYKLLLKVQYQDF--------AVSINGMRIDNG---- 722
Query: 643 EEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678
L + A + M GYRLLAYL+LR++K
Sbjct: 723 ----------LTEVAALVVMIFGYRLLAYLSLRQMK 748
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/716 (41%), Positives = 426/716 (59%), Gaps = 124/716 (17%)
Query: 4 FDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLMSSC--------YPITLKFIDVCYRI 55
F P+ ++ SND D+L + + SS +PI LKFID+ Y++
Sbjct: 100 FTGFTVPHEEIIASERCSND-----DILEDIEAATSSVVKFQAEPTFPIYLKFIDITYKV 154
Query: 56 KIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGS 115
+G TSS+ E++ILNGI+G PGE+LA++GPSGS
Sbjct: 155 T---------------TKGMTSSS----------EKSILNGISGSAYPGELLALMGPSGS 189
Query: 116 GKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFC 175
GK+T+LN L GR +Q + G++ N+ +KH+ R GFVTQDD+L+PHLTV+ETL +
Sbjct: 190 GKTTLLNALGGRFNQ-QNIGGSVSYNDKPYSKHLKTRIGFVTQDDVLFPHLTVKETLTYT 248
Query: 176 SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235
+LLRLP+TL+ +EK A +V+ ELGL +C++T+IG SF+RG+SGGERKRV I +E++ N
Sbjct: 249 ALLRLPKTLTEQEKEQRAASVIQELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIMTN 308
Query: 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
PSLL+LDEPTS LDST A ++V L + + GKTIVT++HQPSSR++ FDK++VLS G
Sbjct: 309 PSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFDKLVVLSRGS 368
Query: 296 CLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVS------EREK----- 344
LYFGK SEAMSYF S+G SP MNPA+FLLDL NG +++ +S E+ K
Sbjct: 369 LLYFGKASEAMSYFSSIGCSPLLAMNPAEFLLDLVNG--NMNDISVPSALKEKMKIIRLE 426
Query: 345 ---PNVKSSIVASYNTLLAPKVRAACMEA----------------TTLPRREALLTGSSS 385
NVK + Y A K + A ME T P+RE L
Sbjct: 427 LYVRNVKCDVETQYLE-EAYKTQIAVMEKMKLMAPVPLDEEVKLMITCPKREWGL----- 480
Query: 386 SSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGIM 445
+W Q+ +L R +KER+H+ + LRV QV++ +++ G++
Sbjct: 481 --------------------SWWEQYCLLSLRGIKERRHDYFSWLRVTQVLSTAIILGLL 520
Query: 446 WWHSDFREVQ-DRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMS 504
WW SD + R GL FFI+VFWG P A+F FPQERA+ KER S MY LS+YF++
Sbjct: 521 WWQSDITSQRPTRSGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERESNMYRLSAYFVA 580
Query: 505 RIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMD 564
R DLP++LILP +FL+++Y+M G + +F ++L + ++ +QGLGLA+GA +MD
Sbjct: 581 RTTSDLPLDLILPVLFLVVVYFMAGLRLRAESFFLSVLTVFLCIVAAQGLGLAIGASLMD 640
Query: 565 AKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYL 624
K+A+T+ +VT++ F+L GGY+V K+P IAWI+++S Y+ Y+LL+ VQY +
Sbjct: 641 LKKATTLASVTVMTFMLAGGYFVKKVPFFIAWIRFMSFNYHTYKLLVKVQYEE------- 693
Query: 625 LGCFDRHGSSRDASCKFVEEDIVGQ--ISPLVSIGAFLSMFVGYRLLAYLALRRLK 678
+ E + G+ S L + A ++M +GYRL+AY +LRR+K
Sbjct: 694 -----------------IMESVNGEEIESGLKEVSALVAMIIGYRLVAYFSLRRMK 732
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 251/682 (36%), Positives = 378/682 (55%), Gaps = 46/682 (6%)
Query: 11 NGDLTDCPYQSNDCSPARDLLHQLPS---LMSSCYPITLKFIDVCYRIKIENKSKEGSSF 67
N + Y N S D+ + S L + PI LKF DV Y+++ + S
Sbjct: 27 NMEFMPQAYLRNQYSSEIDIDEEFVSTYPLEDAPLPIFLKFEDVEYKVRNSHASSANLVK 86
Query: 68 RRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127
+ + ++ D G + IL GITG PGEILA++GPSGSGK+T+L ++ GR
Sbjct: 87 TMVSKVVTHTNPDPDGY------KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGR 140
Query: 128 LHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTK 187
L + G + N+ + + +R GFVTQDD+L P LTV ETL F + LRLP ++S +
Sbjct: 141 LTDN--VKGKLTYNDIPYSPSVKRRIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKE 198
Query: 188 EKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247
+K + E ++ ELGL +C T +G F++GISGGERKR SIA+E+L++PSLL+LDEPTSG
Sbjct: 199 QKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSG 258
Query: 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
LDST+A +L+ L + + G+T++T++HQPSSR++ MFDK+L++SEG ++GK E+M
Sbjct: 259 LDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESME 318
Query: 308 YFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLLAPKVRAAC 367
YF S+ P MNPA+FLLDLA G VS+ P + LLA K
Sbjct: 319 YFSSLRILPEIAMNPAEFLLDLATG-----QVSDISLP----------DELLAAKTAQPD 363
Query: 368 MEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFA---------TWLNQFSILLHRS 418
E L + E H + A +W +QF IL R+
Sbjct: 364 SEEVLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQVKKDWTLSWWDQFLILSRRT 423
Query: 419 LKERKHESLNTLRVFQVIAASLLSGIMWWHSDFR---EVQDRLGLFFFISVFWGVLPSVN 475
+ER+ + + LR+ Q + +++ G++WW S ++D++GL F+I +FW
Sbjct: 424 FRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLMFYICIFWTSSSLFG 483
Query: 476 AVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFI 535
AV+ FP E+ +KER + MY LS Y++ + D+ ++ PT F+II+Y+M F
Sbjct: 484 AVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFMIIVYFMAEFNRNIP 543
Query: 536 AFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIA 595
F+ T+L +L + SQG G LGA ++ K+A I ++ ++ F+LTGGYYV +P +
Sbjct: 544 CFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVLMLFLLTGGYYVQHIPKFMQ 603
Query: 596 WIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGS-SRDASCKFVEEDIVGQISPLV 654
W+KY+S +Y +RLL+ VQY + L C + G + +S F D + L
Sbjct: 604 WLKYLSFMHYGFRLLLKVQYSADQ----LFECGSKGGCRTLQSSSSF---DTINLNGGLQ 656
Query: 655 SIGAFLSMFVGYRLLAYLALRR 676
+ L+M GYRL AY LR+
Sbjct: 657 ELWVLLAMAFGYRLCAYFCLRK 678
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 184/570 (32%), Positives = 301/570 (52%), Gaps = 39/570 (6%)
Query: 58 ENKSKEGSSFR--RIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGS 115
E + G S R I R T S D+ S + R +L ++G PG +LAI+GPSGS
Sbjct: 56 ETEDGGGDSIRPVTIRWRNITCSLSDKSSKSV---RFLLKNVSGEAKPGRLLAIMGPSGS 112
Query: 116 GKSTMLNVLAG------RLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169
GK+T+LNVLAG RLH L+G +L N KP+ + + FV Q+D+ + LTVR
Sbjct: 113 GKTTLLNVLAGQLSLSPRLH----LSG-LLEVNGKPSSSKAYKLAFVRQEDLFFSQLTVR 167
Query: 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA 229
ETL F + L+LP S +E+ ++ +LGL C ++ +G++ +RGISGGE+KR+S+A
Sbjct: 168 ETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSLA 227
Query: 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVL 289
E++ +PS++ DEPT+GLD+ A +++ TL L Q G T++ S+HQP VY FD ++
Sbjct: 228 CELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDIV 287
Query: 290 VLSEGRCLYFG-KGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVK 348
+L+EG +Y G G E ++YF + GF +NPA+FL DL + Y + V
Sbjct: 288 LLTEGTLVYAGPAGKEPLTYFGNFGFLCPEHVNPAEFLADLISVDYSSSETVYSSQKRVH 347
Query: 349 SSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWL 408
++V +++ + ++ + AT L +E G + E T W
Sbjct: 348 -ALVDAFS-----QRSSSVLYATPLSMKEETKNGMRPRRKAIVERTDG----------WW 391
Query: 409 NQFSILLHRS-LKERKHESLNTLRVFQVIAASLLSGIMWWHSDFRE--VQDRLGLFFFIS 465
QF +LL R+ ++ + N +R +A++++ G ++W + +QDR+GL +
Sbjct: 392 RQFFLLLKRAWMQASRDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAA 451
Query: 466 VFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIY 525
+ + V FP+ERAI +ER+ G Y+L Y +S+ I ++P+ P +F ++Y
Sbjct: 452 INTAMAALTKTVGVFPKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLY 511
Query: 526 WMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGY 585
M P F + ++ + +GL +GA++ + A + M F++ GGY
Sbjct: 512 PMARLNPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGY 571
Query: 586 YVH--KMPSCIAWIKYISSTYYNYR-LLIN 612
YV+ P WI S + ++ L IN
Sbjct: 572 YVNADNTPIIFRWIPRASLIRWAFQGLCIN 601
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2 | Back alignment and function description |
|---|
Score = 282 bits (722), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 200/634 (31%), Positives = 329/634 (51%), Gaps = 54/634 (8%)
Query: 61 SKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120
++ GS +R++ NR +++ A + +L + G+ PGE+LA++G SG+GK+T+
Sbjct: 82 NQPGSGWRQLVNRTRGLFCNERHIPAP--RKHLLKNVCGVAYPGELLAVMGSSGAGKTTL 139
Query: 121 LNVLAGRLHQGHGLTGT---ILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL 177
LN LA R QG ++ + +L K + R +V QDD+ LT RE L+F ++
Sbjct: 140 LNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAM 199
Query: 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG-NSFIRGISGGERKRVSIAHEMLINP 236
+R+PR L+ +++ + + V+ EL L+KC++TIIG ++G+SGGERKR++ A E L +P
Sbjct: 200 VRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTDP 259
Query: 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296
LLI DEPTSGLDS A+ +V L L Q+GKT++ ++HQPSS ++++FDK+L+++EGR
Sbjct: 260 PLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKILLMAEGRV 319
Query: 297 LYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYN 356
+ G SEA+ +F VG NPADF + + L V RE + + I +
Sbjct: 320 AFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQV------LAVVPGREIES-RDRIAKICD 372
Query: 357 TLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLH 416
KV A ME ++ + E+ N ATW QF +L
Sbjct: 373 NFAISKV-ARDMEQLL-------------ATKNLEKPLEQPENGYTYKATWFMQFRAVLW 418
Query: 417 RS-LKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREV---QDRLGLFFFIS--VFWGV 470
RS L K L +R+ Q ++L G+++ +V +F F++ F V
Sbjct: 419 RSWLSVLKEPLLVKVRLIQTTMVAILIGLIFLGQQLTQVGVMNINGAIFLFLTNMTFQNV 478
Query: 471 LPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGF 530
++N F E +FM+E S +Y +YF+ + I +LP+ L +P VF I Y M G
Sbjct: 479 FATIN---VFTSELPVFMREARSRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGL 535
Query: 531 KPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH-- 588
+ + F L ++ VS G + A ++ ++ F+L GG++++
Sbjct: 536 RAGVLHFFNCLALVTLVANVSTSFGYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSG 595
Query: 589 KMPSCIAWIKYISS-TYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIV 647
+P + W+ Y+S Y N LLIN Q+ D + + C +S + +C + I+
Sbjct: 596 SVPVYLKWLSYLSWFRYANEGLLIN-QWADVEPGE--ISC-----TSSNTTCPSSGKVIL 647
Query: 648 GQIS------PLVSIGAFLSMFVGYRLLAYLALR 675
++ PL +G + + V +R+LAYLALR
Sbjct: 648 ETLNFSAADLPLDYVGLAI-LIVSFRVLAYLALR 680
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 187/587 (31%), Positives = 304/587 (51%), Gaps = 52/587 (8%)
Query: 46 LKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGE 105
L F D+CYR+K+ K G F R K E+ IL I G++ PG
Sbjct: 37 LSFHDICYRVKV----KSGFLFCR-----------------KTVEKEILTNINGIMKPG- 74
Query: 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPH 165
+ AILGP+G GKS++L+VLA R HGL+G +L N + +G+V QDD++
Sbjct: 75 LNAILGPTGGGKSSLLDVLAAR-KDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGT 133
Query: 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225
LTVRE L F + LRLP T++ EK V+ ELGL K ++ +G FIRG+SGGERKR
Sbjct: 134 LTVRENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKR 193
Query: 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285
SIA E++ +PS+L LDEPT+GLDS+ A ++ L + ++G+TI+ S+HQP ++++F
Sbjct: 194 TSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLF 253
Query: 286 DKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLANG---------VYHL 336
D + +L+ GR ++ G EA+ YF S+G++ NPADF LD+ NG
Sbjct: 254 DSLTLLASGRLMFHGPAREALGYFASIGYNCEPYNNPADFFLDVINGDSSAVVLSRADRD 313
Query: 337 DGVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRS 396
+G E E+P K +T L K+ A ++ + L S ++ S
Sbjct: 314 EGAQEPEEPPEK-------DTPLIDKLAAFYTNSSFFKDTKVEL---DQFSGGRKKKKSS 363
Query: 397 HNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWW--HSDFRE 453
V ++ +Q + RS K + + ++ I L+ G +++ +D
Sbjct: 364 VYKEVTYTTSFCHQLRWISRRSFKNLLGNPQASVAQIIVTIILGLVIGAIFYDLKNDPSG 423
Query: 454 VQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGD-LPV 512
+Q+R G+ FF++ SV+AV E+ +F+ E SG Y +SSYF +++ D LP+
Sbjct: 424 IQNRAGVLFFLTTNQ-CFSSVSAVELLVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLPM 482
Query: 513 ELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIV 572
++ +F I Y++ G KP +F + L+ + + LA+ A A+ ++
Sbjct: 483 RMLPSIIFTCITYFLLGLKPAVGSFFIMMFTLMMVAYSASSMALAIAAGQSVVSVATLLM 542
Query: 573 TVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGD 617
T++ + ++ G V+ + ++W++Y S Y + L QY +
Sbjct: 543 TISFVFMMIFSGLLVNLKTVVPWLSWLQYFSIPRYGFSAL---QYNE 586
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Sus scrofa (taxid: 9823) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 679 | ||||||
| 225460745 | 664 | PREDICTED: ABC transporter G family memb | 0.976 | 0.998 | 0.707 | 0.0 | |
| 224145173 | 648 | white-brown-complex ABC transporter fami | 0.951 | 0.996 | 0.741 | 0.0 | |
| 356574585 | 670 | PREDICTED: ABC transporter G family memb | 0.973 | 0.986 | 0.693 | 0.0 | |
| 356533997 | 669 | PREDICTED: ABC transporter G family memb | 0.963 | 0.977 | 0.694 | 0.0 | |
| 296081131 | 645 | unnamed protein product [Vitis vinifera] | 0.948 | 0.998 | 0.688 | 0.0 | |
| 224135927 | 652 | white-brown-complex ABC transporter fami | 0.954 | 0.993 | 0.700 | 0.0 | |
| 255588063 | 572 | ATP-binding cassette transporter, putati | 0.842 | 1.0 | 0.760 | 0.0 | |
| 449443832 | 602 | PREDICTED: ABC transporter G family memb | 0.877 | 0.990 | 0.721 | 0.0 | |
| 297841947 | 661 | hypothetical protein ARALYDRAFT_476326 [ | 0.955 | 0.981 | 0.616 | 0.0 | |
| 18409955 | 662 | ABC transporter G family member 25 [Arab | 0.963 | 0.987 | 0.607 | 0.0 |
| >gi|225460745|ref|XP_002268373.1| PREDICTED: ABC transporter G family member 25-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/680 (70%), Positives = 558/680 (82%), Gaps = 17/680 (2%)
Query: 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENK 60
MP + PNG ++ S P+ L LM+SCYPI+LKFID+CYR+K+E K
Sbjct: 1 MPVMGGGDAPNGGASE---GSERVKPSSQDSRDLNFLMASCYPISLKFIDICYRVKLEKK 57
Query: 61 SKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120
G R + G T S+D +T IQE+TILNG+TGM PGEILA+LGPSGSGKST+
Sbjct: 58 KSRGGLCRPMLG-GPTKSSDRGSTTETIQEKTILNGVTGMACPGEILAVLGPSGSGKSTL 116
Query: 121 LNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180
LN LAGR+ QGH TGT+L N K TK + +RTGFVTQDDILYPHLTVRETL+FCSLLRL
Sbjct: 117 LNALAGRI-QGHCFTGTVLANGRKLTKPVLRRTGFVTQDDILYPHLTVRETLIFCSLLRL 175
Query: 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240
P TL+ +EK S+A++V+AELGL KCENTIIGNSFIRG+SGGERKRVSIAHEMLINPSLLI
Sbjct: 176 PNTLTKQEKISLADSVIAELGLAKCENTIIGNSFIRGVSGGERKRVSIAHEMLINPSLLI 235
Query: 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
LDEPTSGLDST+AYRLVSTL SL +GKTIVTSMHQPSSRVYQMF VLVLSEGRCLYFG
Sbjct: 236 LDEPTSGLDSTSAYRLVSTLVSLANKGKTIVTSMHQPSSRVYQMFHSVLVLSEGRCLYFG 295
Query: 301 KGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLLA 360
KGS+AMSYFE+VGF+PSFPMNPADFLLDLANGV HLDGVSEREKPN+K ++V+SYN+LLA
Sbjct: 296 KGSQAMSYFETVGFTPSFPMNPADFLLDLANGVCHLDGVSEREKPNIKQALVSSYNSLLA 355
Query: 361 PKVRAAC-MEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSL 419
PKV+ AC M+ +E + S +S+E R + + G +TW NQFSILL R L
Sbjct: 356 PKVKDACNMDTNVTAPKETV-------SLASKECRRRCSYS--GLSTWFNQFSILLQRGL 406
Query: 420 KERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFA 479
KERKHES N+LRVFQVIAA+LL+G+MWWHSDF ++QDRLGL FFI++FWGV PS N+VFA
Sbjct: 407 KERKHESFNSLRVFQVIAAALLAGLMWWHSDFLDIQDRLGLLFFIAIFWGVFPSFNSVFA 466
Query: 480 FPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQ 539
FPQERAIFMKERASGMYTLSSYFM+RI+GD+P+ELILP VFL + YWM G KPE AF+
Sbjct: 467 FPQERAIFMKERASGMYTLSSYFMARIVGDMPMELILPMVFLTVAYWMAGLKPEVGAFLL 526
Query: 540 TLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKY 599
TL++LLGYVLVSQGLGLALGA IMDAK+AST+VTVTMLAFVLTGG+YVHKMPSC+ WIKY
Sbjct: 527 TLVILLGYVLVSQGLGLALGAAIMDAKKASTMVTVTMLAFVLTGGFYVHKMPSCMTWIKY 586
Query: 600 ISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVSIGAF 659
IS+T+Y+YRLLINVQYG+GK+IS LLGC HG +R ASCKF+EEDI GQISP I A
Sbjct: 587 ISTTFYSYRLLINVQYGEGKRISSLLGC-SHHGINR-ASCKFIEEDIGGQISPAFCITAM 644
Query: 660 LSMFVGYRLLAYLALRRLKA 679
+ MFVGYRLLAYLALR +KA
Sbjct: 645 VFMFVGYRLLAYLALRCIKA 664
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145173|ref|XP_002325552.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222862427|gb|EEE99933.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/665 (74%), Positives = 562/665 (84%), Gaps = 19/665 (2%)
Query: 16 DCPYQSNDCSPARDLLHQLPSLM-SSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRG 74
D P QS C P +PSL+ SSCYPITLKF+DV YR+K ENK+K GS+ +RIF G
Sbjct: 1 DGPDQSKVCPPPPRDSCDIPSLLLSSCYPITLKFMDVGYRVKFENKNK-GSNIKRIFGHG 59
Query: 75 STSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL 134
T S DQ QERTILNGITGM SPGEILAILGPSGSGKST+LN +AGR+ Q +G
Sbjct: 60 PTIS--DQ-----FQERTILNGITGMASPGEILAILGPSGSGKSTLLNAIAGRI-QANGF 111
Query: 135 TGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE 194
TGT+LTNN KP K I KR GFVTQDDILYPHLTVRETLVFCSLLRLP++LS ++KT +AE
Sbjct: 112 TGTVLTNNRKPAKQIMKRIGFVTQDDILYPHLTVRETLVFCSLLRLPKSLSKQDKTLVAE 171
Query: 195 AVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
+V++ELGLTKC NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD+TAAY
Sbjct: 172 SVISELGLTKCGNTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAY 231
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314
RL+ TLG+L Q+GKTIVTSMHQPSSRVYQMFD VLVLSEGRCLYFGKGSEAM+YFESVG+
Sbjct: 232 RLLLTLGTLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLYFGKGSEAMAYFESVGY 291
Query: 315 SPSFPMNPADFLLDLANGVYHLDGVSE-REKPNVKSSIVASYNTLLAPKVRAACMEATTL 373
SPSFPMNPADFLLDLANGV LDGVSE R++PNVK S++ASYNTLLAPKV+AACME ++
Sbjct: 292 SPSFPMNPADFLLDLANGVCQLDGVSELRDQPNVKQSLIASYNTLLAPKVKAACMETGSI 351
Query: 374 PRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKERKHESLNTLRVF 433
+E GS HS +EH S ++ ++W NQFSILL RSLKERKHES NTLR+
Sbjct: 352 SAKENGFIGS----HSFKEHRSSDRISI---SSWFNQFSILLQRSLKERKHESFNTLRIS 404
Query: 434 QVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERAS 493
QVI A++L+G+MWWHSDFR++QDRLGL FF+S+FWGV PS N+VF FPQERAIF+KERAS
Sbjct: 405 QVIMAAVLAGLMWWHSDFRDIQDRLGLLFFMSIFWGVFPSSNSVFVFPQERAIFVKERAS 464
Query: 494 GMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQG 553
GMYTLSSYFMSRI+GDLP+ELILPT+FL + YWM G KPE AF+ TLLVLLGYVLVSQG
Sbjct: 465 GMYTLSSYFMSRIVGDLPMELILPTIFLSVTYWMAGLKPELGAFLLTLLVLLGYVLVSQG 524
Query: 554 LGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINV 613
LGLALGA IMDAKQASTIVT+TMLAFVLTGG+YVHK+P C+AWIKYIS+T+Y Y+LLIN
Sbjct: 525 LGLALGAAIMDAKQASTIVTITMLAFVLTGGFYVHKLPPCMAWIKYISTTFYVYKLLINA 584
Query: 614 QYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLA 673
QYG GK +S LLGC HGS R ASCKFVE+D+ GQISP +S+ A + MFVGYRLLAYLA
Sbjct: 585 QYGGGKNLSSLLGCSLPHGSDR-ASCKFVEQDVAGQISPAISVSALIFMFVGYRLLAYLA 643
Query: 674 LRRLK 678
LRR+K
Sbjct: 644 LRRIK 648
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574585|ref|XP_003555426.1| PREDICTED: ABC transporter G family member 25-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/678 (69%), Positives = 551/678 (81%), Gaps = 17/678 (2%)
Query: 3 GFDSVETPNGDLTDC-PYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENKS 61
F VETPNGD ++ P+ + +RDL +S YPITLKF+DV YR+KIE+K
Sbjct: 9 AFAGVETPNGDSSNTNPHPKHTPQESRDL----SPFLSCSYPITLKFMDVAYRLKIEDKQ 64
Query: 62 KEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTML 121
K G S +R F +S +D +ERTIL G+TG+ PGEILA+LGPSGSGKST+L
Sbjct: 65 KSGGSIKRFFTPHESSPSDQGSRAGAPKERTILKGVTGIAQPGEILAVLGPSGSGKSTLL 124
Query: 122 NVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP 181
+ LAGRLH G GLTGTIL N++K TK + +RTGFVTQDDILYPHLTVRETLVFC++LRLP
Sbjct: 125 HALAGRLH-GPGLTGTILANSSKLTKPVLRRTGFVTQDDILYPHLTVRETLVFCAMLRLP 183
Query: 182 RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241
R L EK + AEA +AELGL KCENTIIGNSFIRG+SGGERKRVSIAHEML+NPSLLIL
Sbjct: 184 RALLRSEKVAAAEAAIAELGLGKCENTIIGNSFIRGVSGGERKRVSIAHEMLVNPSLLIL 243
Query: 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
DEPTSGLDSTAA+RLV TLGSL ++GKT++TS+HQPSSRVYQMFDKV+VL+EG+CLYFGK
Sbjct: 244 DEPTSGLDSTAAHRLVLTLGSLAKKGKTVITSVHQPSSRVYQMFDKVVVLTEGQCLYFGK 303
Query: 302 GSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLLAP 361
GS+AM YF+SVGF+PSFPMNPADFLLDLANGV H+DG SE++KPN+K S++ SYNT+L P
Sbjct: 304 GSDAMRYFQSVGFAPSFPMNPADFLLDLANGVCHVDGQSEKDKPNIKQSLIHSYNTVLGP 363
Query: 362 KVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKE 421
KV+AACM+ +P + S+SS+E RS N +GF W QFSILL RSLKE
Sbjct: 364 KVKAACMDTANVPTKNT----HPWRSNSSKEFRRS---NRVGFLDWFYQFSILLQRSLKE 416
Query: 422 RKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAFP 481
RKHES NTLRV QVIAA+LL+G+MWWHSD+R +QDRLGL FFIS+FWGV PS N+VFAFP
Sbjct: 417 RKHESFNTLRVCQVIAAALLAGLMWWHSDYRNIQDRLGLLFFISIFWGVFPSFNSVFAFP 476
Query: 482 QERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTL 541
QER IFMKERASGMYTLSSYFM+RI+GDLP+ELILPT+FLI+ YWM G KP+ AF+ TL
Sbjct: 477 QERTIFMKERASGMYTLSSYFMARIVGDLPMELILPTIFLIVTYWMGGLKPDLWAFLLTL 536
Query: 542 LVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYIS 601
LV+LGYV+VSQGLGLALGA IMDAKQAST+ VTMLAFVLTGGYYVHK+PSC+AWIKYIS
Sbjct: 537 LVVLGYVMVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCMAWIKYIS 596
Query: 602 STYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVSIGAFLS 661
+T+Y YRLL +QY DGKKISYLLGC+ HG C+FVEED+VGQI L IG L
Sbjct: 597 TTFYCYRLLTRIQYEDGKKISYLLGCY--HGDK--GGCRFVEEDVVGQIGTLGCIGVLLF 652
Query: 662 MFVGYRLLAYLALRRLKA 679
MFV YRLLAYLALRR+K+
Sbjct: 653 MFVFYRLLAYLALRRIKS 670
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533997|ref|XP_003535544.1| PREDICTED: ABC transporter G family member 25-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/680 (69%), Positives = 551/680 (81%), Gaps = 26/680 (3%)
Query: 4 FDSVETPNGDLTDC-PY---QSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIEN 59
F VETPNGD ++ P+ +S D SP +S YPITLKFIDV YR+KIE+
Sbjct: 12 FGGVETPNGDSSNTKPHPKQESRDLSP----------FLSCSYPITLKFIDVAYRLKIED 61
Query: 60 KSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKST 119
K K G S +R F +S +D QERTIL G+TG+ PGEILA+LGPSGSGKST
Sbjct: 62 KQKNGGSIKRFFTPHESSPSDQGSRAGASQERTILKGVTGIAHPGEILAVLGPSGSGKST 121
Query: 120 MLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179
+LN LAGRLH GHGLTGTIL N++K TK + +RTGFVTQDDILYPHLTVRETLVFC++LR
Sbjct: 122 LLNALAGRLH-GHGLTGTILANSSKLTKPVLRRTGFVTQDDILYPHLTVRETLVFCAMLR 180
Query: 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239
LPRTL K ++AEA +AELGL KCE+TIIGNSFIRG+SGGERKRVSIAHEML++PSLL
Sbjct: 181 LPRTLPRAAKIAVAEAAIAELGLGKCEDTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLL 240
Query: 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299
ILDEPTSGLDSTAA+RLV TLGSL ++GKT++TS+HQPSSRVYQMFDKVLVLSEG+CLYF
Sbjct: 241 ILDEPTSGLDSTAAHRLVVTLGSLAKKGKTVITSVHQPSSRVYQMFDKVLVLSEGQCLYF 300
Query: 300 GKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLL 359
GKGS+AM YF+SVGF+PSFPMNPADFLLDLANGV H+DG SE+++PN+K +++ SYNT+L
Sbjct: 301 GKGSDAMRYFQSVGFAPSFPMNPADFLLDLANGVCHVDGQSEKDRPNIKQNLIHSYNTIL 360
Query: 360 APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSL 419
PKV AACM++T +P R S+SS+E R N+ + F W QF ILL RSL
Sbjct: 361 GPKVTAACMDSTNVPSRNT----HPLRSNSSKEFRR---NDRVSFFDWFYQFRILLQRSL 413
Query: 420 KERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFA 479
KERKHES NTLRV QVIAA+LL+G+MWWHSD+R +QDRLGL FFIS+FWGV PS N+VFA
Sbjct: 414 KERKHESFNTLRVCQVIAAALLAGLMWWHSDYRNIQDRLGLLFFISIFWGVFPSFNSVFA 473
Query: 480 FPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQ 539
FPQERAIFMKERASGMYTLSSYFM+RI+GDLP+ELILPT+FLI+ YWM G KP+ AF+
Sbjct: 474 FPQERAIFMKERASGMYTLSSYFMARIVGDLPMELILPTIFLIVTYWMGGLKPDLWAFLL 533
Query: 540 TLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKY 599
TLLV+LGYV+VSQGLGLALGA IMDAKQAST+ VTMLAFVLTGGYYVHK+PSC+AWIKY
Sbjct: 534 TLLVVLGYVMVSQGLGLALGAAIMDAKQASTVAAVTMLAFVLTGGYYVHKVPSCMAWIKY 593
Query: 600 ISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVSIGAF 659
IS+T+Y YRLL +QY DGKKISYLLGC+ R C FVEED+VGQI L IG
Sbjct: 594 ISTTFYCYRLLTRIQYEDGKKISYLLGCYQRD----KGGCSFVEEDVVGQIGTLGCIGVL 649
Query: 660 LSMFVGYRLLAYLALRRLKA 679
L MFV YRLLAYLALRR+K+
Sbjct: 650 LFMFVFYRLLAYLALRRIKS 669
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081131|emb|CBI18157.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/680 (68%), Positives = 543/680 (79%), Gaps = 36/680 (5%)
Query: 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENK 60
MP + PNG ++ S P+ L LM+SCYPI+LKFID+CYR+K+E K
Sbjct: 1 MPVMGGGDAPNGGASE---GSERVKPSSQDSRDLNFLMASCYPISLKFIDICYRVKLEKK 57
Query: 61 SKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120
G R + G T S+D +T IQE+TILNG+TGM PGEILA+LGPSGSGKST+
Sbjct: 58 KSRGGLCRPMLG-GPTKSSDRGSTTETIQEKTILNGVTGMACPGEILAVLGPSGSGKSTL 116
Query: 121 LNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180
LN LAGR+ QGH TGT+L N K TK + +RTGFVTQDDILYPHLTVRETL+FCSLLRL
Sbjct: 117 LNALAGRI-QGHCFTGTVLANGRKLTKPVLRRTGFVTQDDILYPHLTVRETLIFCSLLRL 175
Query: 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240
P TL+ +EK S+A++V+AELGL KCENTIIGNSFIRG+SGGERKRVSIAHEMLINPSLLI
Sbjct: 176 PNTLTKQEKISLADSVIAELGLAKCENTIIGNSFIRGVSGGERKRVSIAHEMLINPSLLI 235
Query: 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
LDEPTSGLDST+AYRLVSTL SL +GKTIVTSMHQPSSRVYQMF VLVLSEGRCLYFG
Sbjct: 236 LDEPTSGLDSTSAYRLVSTLVSLANKGKTIVTSMHQPSSRVYQMFHSVLVLSEGRCLYFG 295
Query: 301 KGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLLA 360
KGS+AMSYFE+VGF+PSFPMNPADFLLDLANGV HLDGVSEREKPN+K ++V+SYN+LLA
Sbjct: 296 KGSQAMSYFETVGFTPSFPMNPADFLLDLANGVCHLDGVSEREKPNIKQALVSSYNSLLA 355
Query: 361 PKVRAAC-MEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSL 419
PKV+ AC M+ +E + S +S+E R + + G +TW NQFSILL R L
Sbjct: 356 PKVKDACNMDTNVTAPKETV-------SLASKECRRRCSYS--GLSTWFNQFSILLQRGL 406
Query: 420 KERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFA 479
KERKHES N+LRVFQVIAA+LL+G+MWWHSDF ++QDRLGL FFI++FWGV PS N+VFA
Sbjct: 407 KERKHESFNSLRVFQVIAAALLAGLMWWHSDFLDIQDRLGLLFFIAIFWGVFPSFNSVFA 466
Query: 480 FPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQ 539
FPQERAIFMKERASGMYTLSSYFM+RI+GD+P+ELILP VFL + YWM G KPE AF+
Sbjct: 467 FPQERAIFMKERASGMYTLSSYFMARIVGDMPMELILPMVFLTVAYWMAGLKPEVGAFLL 526
Query: 540 TLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKY 599
TL++LLGYVLVSQGLGLALGA IMDAK+AST+VTVTMLAFVLTGG+YVHKMPSC+ WIKY
Sbjct: 527 TLVILLGYVLVSQGLGLALGAAIMDAKKASTMVTVTMLAFVLTGGFYVHKMPSCMTWIKY 586
Query: 600 ISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVSIGAF 659
IS+T+Y+YRLLINVQYG+GK+IS LLGC QISP I A
Sbjct: 587 ISTTFYSYRLLINVQYGEGKRISSLLGC---------------------QISPAFCITAM 625
Query: 660 LSMFVGYRLLAYLALRRLKA 679
+ MFVGYRLLAYLALR +KA
Sbjct: 626 VFMFVGYRLLAYLALRCIKA 645
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135927|ref|XP_002327338.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222835708|gb|EEE74143.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/682 (70%), Positives = 549/682 (80%), Gaps = 34/682 (4%)
Query: 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLM-SSCYPITLKFIDVCYRIKIEN 59
MP ++ VET NGD D P +S P RD LPSLM SSCYPITLKF++V YR+K EN
Sbjct: 1 MPVYNGVETTNGDSPDGPDRSK-APPPRDS-RDLPSLMLSSCYPITLKFMEVGYRVKFEN 58
Query: 60 KSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKST 119
++K GS+ +RI G + DQ IQERTILNGITGM SPGEILA+LGPSGSGKST
Sbjct: 59 RNK-GSNIKRIL--GHEPTICDQ-----IQERTILNGITGMASPGEILAVLGPSGSGKST 110
Query: 120 MLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179
LN LAGR+ Q + TGTIL NN KPTK I KRTGFVTQDDILYPHLTVRETLVFCSLLR
Sbjct: 111 FLNALAGRI-QSNSFTGTILANNRKPTKQIMKRTGFVTQDDILYPHLTVRETLVFCSLLR 169
Query: 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239
LP++LS +EKT +AE+V++ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL
Sbjct: 170 LPKSLSKQEKTLVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 229
Query: 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299
ILDEPTSGLD+TAAYRLV TLGSL Q+GKTIVTSMHQPSSRVYQMFD V+VLSEGRCL+
Sbjct: 230 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVMVLSEGRCLFE 289
Query: 300 GKGSEAM-SYFESVGFSPSFPMNPADFLLDLANG--VYHLDGVSEREKPNVKSSIVASYN 356
K A+ FE + F + + L L++ V+ DGVSER+KPNVK S++ASYN
Sbjct: 290 SKLHLAIFEVFEFIDFQENLSL-----LNRLSHHICVFQTDGVSERDKPNVKQSLIASYN 344
Query: 357 TLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLH 416
TLLAPK RAA ME + S++S+EH S + I W NQFSILL
Sbjct: 345 TLLAPKARAAFMETKE----------NGIGSYNSKEHRSS---DRISIDAWFNQFSILLQ 391
Query: 417 RSLKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNA 476
RSLKERKHES NTLRVFQVI A++ +G+MWWHSDFR+VQDRLGL FF+S+FWGV PS N+
Sbjct: 392 RSLKERKHESFNTLRVFQVIMAAVFAGLMWWHSDFRDVQDRLGLLFFMSIFWGVFPSSNS 451
Query: 477 VFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIA 536
VF FPQERAIF+KERASGMYTLSSYFMSRI+GDLP+ELILPT+FL + YWM G KPE A
Sbjct: 452 VFVFPQERAIFVKERASGMYTLSSYFMSRIVGDLPMELILPTIFLSVTYWMAGLKPELGA 511
Query: 537 FVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAW 596
F+ TLLVLLGYVLVSQGLGLALGA IMDAKQASTIVT+TMLAFVLTGG+YVHK+PSC+AW
Sbjct: 512 FLLTLLVLLGYVLVSQGLGLALGAAIMDAKQASTIVTITMLAFVLTGGFYVHKLPSCMAW 571
Query: 597 IKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVSI 656
IKYIS+T+Y+Y+LLINVQYG+GK++S LLGC HGS R ASCKFVE+D+ GQISP+VS+
Sbjct: 572 IKYISTTFYSYKLLINVQYGEGKRLSSLLGCSLPHGSDR-ASCKFVEQDVAGQISPVVSV 630
Query: 657 GAFLSMFVGYRLLAYLALRRLK 678
+ MFVGYRLLAYLALRR+K
Sbjct: 631 SVLIFMFVGYRLLAYLALRRIK 652
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255588063|ref|XP_002534493.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223525196|gb|EEF27890.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/580 (76%), Positives = 508/580 (87%), Gaps = 8/580 (1%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159
MVSPGEILAILGPSGSGKST+LN +AGR+ QG+G TGT+L NN K KHI KRTGFVTQD
Sbjct: 1 MVSPGEILAILGPSGSGKSTLLNAIAGRI-QGNGFTGTVLANNKKLNKHILKRTGFVTQD 59
Query: 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGIS 219
DILYPHLTVRETL+FCSLLRLP++L KEK S+AE+V++ELGLTKCENTI+GNSFIRG+S
Sbjct: 60 DILYPHLTVRETLIFCSLLRLPKSLLKKEKISLAESVISELGLTKCENTIVGNSFIRGVS 119
Query: 220 GGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279
GGERKRVSI HEMLINPSLLILDEPTSGLDSTAA+RLV TL SL Q+GKTIVTSMHQPSS
Sbjct: 120 GGERKRVSIGHEMLINPSLLILDEPTSGLDSTAAHRLVLTLESLAQKGKTIVTSMHQPSS 179
Query: 280 RVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGV 339
RVYQMF VLVLSEGRC+YFGKGS+AM+YFESVGFSPSFPMNPADFLLDLANGV +DG
Sbjct: 180 RVYQMFSSVLVLSEGRCVYFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQIDGA 239
Query: 340 SEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNN 399
SER+KPN+K S++ASYN++LAP+VR ACME T P +E +LTGS HSS+E+
Sbjct: 240 SERDKPNIKQSLIASYNSMLAPRVRTACMETTLTPAKETILTGS----HSSKEN---RCC 292
Query: 400 NVIGFATWLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLG 459
N+ GFA W NQFSILL RSLKERKHE+ N LRVFQVIAA+LL+G+MWWHSDFR++QDRLG
Sbjct: 293 NIAGFAAWFNQFSILLQRSLKERKHETFNALRVFQVIAAALLAGLMWWHSDFRDIQDRLG 352
Query: 460 LFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTV 519
L F+ ++FWGV PS N+VFAFPQERAIF+KERASGMYTLSSYFMSRI+GDLP+ELILPT+
Sbjct: 353 LLFYTAIFWGVFPSFNSVFAFPQERAIFIKERASGMYTLSSYFMSRIVGDLPMELILPTI 412
Query: 520 FLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAF 579
FL ++YWM G KP ++F+ TLLVLLGYV+VSQGLG ALGA IMDAKQASTIVTVTMLAF
Sbjct: 413 FLTVVYWMAGLKPNVVSFLLTLLVLLGYVVVSQGLGFALGAAIMDAKQASTIVTVTMLAF 472
Query: 580 VLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASC 639
VLTGG+YVHK+PSC+AW+KYIS+TYY+YRLLI+VQYGDGK++S LLGC +S A C
Sbjct: 473 VLTGGFYVHKVPSCMAWMKYISTTYYSYRLLISVQYGDGKQLSSLLGCSSDTHASDKAGC 532
Query: 640 KFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLKA 679
KF+E+DI+GQISP V + + MFVGYRLLAYLALRR A
Sbjct: 533 KFLEQDIIGQISPEVCVAVLVFMFVGYRLLAYLALRRFSA 572
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443832|ref|XP_004139680.1| PREDICTED: ABC transporter G family member 25-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/615 (72%), Positives = 515/615 (83%), Gaps = 19/615 (3%)
Query: 64 GSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNV 123
G++ RI GS+ GS +QER+IL+G+TGMVSPGEILAILGPSGSGKST+LN
Sbjct: 7 GNAIGRILGCGSS-----DGSPPPVQERSILHGVTGMVSPGEILAILGPSGSGKSTLLNA 61
Query: 124 LAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT 183
LAGRL QG+GLTG++L N K TK + +RTGFVTQDD+LYPHLTVRETL+FCSLLRLP +
Sbjct: 62 LAGRL-QGNGLTGSVLANGRKLTKSVLRRTGFVTQDDVLYPHLTVRETLIFCSLLRLPLS 120
Query: 184 LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243
+S +EK +AE+V+AELGLTKC++TIIGN+FIRG+SGGERKRVSI HEMLINPSLLILDE
Sbjct: 121 ISRQEKIVVAESVIAELGLTKCQDTIIGNAFIRGVSGGERKRVSIGHEMLINPSLLILDE 180
Query: 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303
PTSGLDSTAA+RLV+T+ +L +GKTIVTS+HQPSSRVYQ FD VLVLSEGRCLY+GKGS
Sbjct: 181 PTSGLDSTAAHRLVTTMAALAHKGKTIVTSIHQPSSRVYQTFDSVLVLSEGRCLYYGKGS 240
Query: 304 EAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLLAPKV 363
EAMSYFES+GF+PSFPMNPADFLLDLANGVY +D SE EKPN+K +++ SYNTLLAP+V
Sbjct: 241 EAMSYFESIGFTPSFPMNPADFLLDLANGVYQIDNTSEVEKPNMKQTLITSYNTLLAPRV 300
Query: 364 RAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKERK 423
+AACME + + + E S N W NQ SILL R+LKERK
Sbjct: 301 KAACMETSMMLET------------MTREQKSSTNTWKASVLLWCNQLSILLQRNLKERK 348
Query: 424 HESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAFPQE 483
HE+ N LRVFQVI A++L+G+MWWHSDFR++QDRLGL FFIS+FWGV PS NAVFAFPQE
Sbjct: 349 HETFNALRVFQVITAAMLAGLMWWHSDFRDIQDRLGLLFFISIFWGVFPSFNAVFAFPQE 408
Query: 484 RAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLV 543
RAIF+KERASGMYTLSSYFM+RIIGDLP+ELILPT+FL + YWMT KPE AF+ TLLV
Sbjct: 409 RAIFLKERASGMYTLSSYFMARIIGDLPMELILPTIFLTVSYWMTELKPELSAFLLTLLV 468
Query: 544 LLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISST 603
LLGYVLVSQGLGLALGA IMDAKQASTIVTVTMLAFVLTGG+YVHK+P+ +AWIKYIS+T
Sbjct: 469 LLGYVLVSQGLGLALGAAIMDAKQASTIVTVTMLAFVLTGGFYVHKVPTGMAWIKYISTT 528
Query: 604 YYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVSIGAFLSMF 663
YY+YRL INVQYG G KI LLGC RHG+ + +SCKFVEED+ GQISP +SIGA L MF
Sbjct: 529 YYSYRLFINVQYGTGDKIWSLLGC-SRHGTEKVSSCKFVEEDVAGQISPALSIGALLFMF 587
Query: 664 VGYRLLAYLALRRLK 678
VGYRLLAYLALRR+K
Sbjct: 588 VGYRLLAYLALRRIK 602
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297841947|ref|XP_002888855.1| hypothetical protein ARALYDRAFT_476326 [Arabidopsis lyrata subsp. lyrata] gi|297334696|gb|EFH65114.1| hypothetical protein ARALYDRAFT_476326 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/689 (61%), Positives = 517/689 (75%), Gaps = 40/689 (5%)
Query: 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENK 60
M GFD VE P S D R SL SSC+PITLKF+DVCYR+KI
Sbjct: 1 MSGFDGVENQMNGPDSSPRLSQDPRDTR-------SLSSSCFPITLKFVDVCYRVKINGM 53
Query: 61 SKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120
S + +F++ S + T +ERTIL+G+TGM+SPGE +A+LGPSGSGKST+
Sbjct: 54 SSDSCNFKKFLGLKHQPSDE----TRSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTL 109
Query: 121 LNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180
LN +AGRLH G LTG IL N+ K TK KRTGFV QDD+LYPHLTVRETLVF +LLRL
Sbjct: 110 LNAVAGRLH-GSNLTGKILINDGKITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRL 168
Query: 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240
P++L+ +K AE+V++ELGLTKCENT++GN+FIRGISGGERKRVSIAHE+LINPSLL+
Sbjct: 169 PQSLTRDDKIRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLV 228
Query: 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299
LDEPTSGLD+TAA RLV TL L +GKT+VTS+HQPSSRV+QMFD VL+LSEG+CL+
Sbjct: 229 LDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFV 288
Query: 300 GKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLL 359
GKG +AM+YFESVGFSP+FPMNPADFLLDLANGV DGV+EREKPNV+ ++V +Y+TLL
Sbjct: 289 GKGRDAMAYFESVGFSPAFPMNPADFLLDLANGVCQTDGVTEREKPNVRQTLVTAYDTLL 348
Query: 360 APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIG------FATWLNQFSI 413
AP+V+ C+EA SH +E+ R V G TW +Q I
Sbjct: 349 APQVKT-CIEA----------------SHFPQENARFVKTRVSGGVITTCITTWFSQLCI 391
Query: 414 LLHRSLKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPS 473
LLHR LKER+HES + LRVFQVIAASLLSG+MWWHSD+R+V DRLGL FFIS+FWGVLPS
Sbjct: 392 LLHRLLKERRHESFDALRVFQVIAASLLSGLMWWHSDYRDVHDRLGLLFFISIFWGVLPS 451
Query: 474 VNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPE 533
NAVF FPQERAIF +ERASGMYTLSSYFM+ ++G L +EL+LP FL + YWM +P
Sbjct: 452 FNAVFTFPQERAIFTRERASGMYTLSSYFMAHVLGSLSMELVLPAAFLTLTYWMVDLRPG 511
Query: 534 FIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSC 593
+ F+ TL VLL YVL SQGLGLALGA IMDAK+ASTIVTVTMLAFVLTGGYYV+K+PS
Sbjct: 512 LVPFLLTLSVLLLYVLASQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGYYVNKVPSG 571
Query: 594 IAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDR----HGSSRDASCKFVEEDIVGQ 649
+ W+KY+S+T+Y YRLL+ VQYG G++I +LGC + G++ A C+FVEE+++G
Sbjct: 572 MVWLKYVSTTFYCYRLLVAVQYGSGEEILRMLGCDSKGKQGAGAATSAGCRFVEEEVIGD 631
Query: 650 ISPLVSIGAFLSMFVGYRLLAYLALRRLK 678
I S+G MFVGYR+LAYLALRR+K
Sbjct: 632 IGLWTSVGVLFLMFVGYRVLAYLALRRIK 660
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18409955|ref|NP_565030.1| ABC transporter G family member 25 [Arabidopsis thaliana] gi|75328103|sp|Q84TH5.1|AB25G_ARATH RecName: Full=ABC transporter G family member 25; Short=ABC transporter ABCG.25; Short=AtABCG25; AltName: Full=White-brown complex homolog protein 26; Short=AtWBC26 gi|28973763|gb|AAO64197.1| putative ABC transporter protein [Arabidopsis thaliana] gi|332197137|gb|AEE35258.1| ABC transporter G family member 25 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/685 (60%), Positives = 512/685 (74%), Gaps = 31/685 (4%)
Query: 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENK 60
M FD VE P S D R LL SSC+PITLKF+DVCYR+KI
Sbjct: 1 MSAFDGVENQMNGPDSSPRLSQDPREPRSLLS------SSCFPITLKFVDVCYRVKIHGM 54
Query: 61 SKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120
S + + +++ S + T +ERTIL+G+TGM+SPGE +A+LGPSGSGKST+
Sbjct: 55 SNDSCNIKKLLGLKQKPSDE----TRSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTL 110
Query: 121 LNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180
LN +AGRLH G LTG IL N+ K TK KRTGFV QDD+LYPHLTVRETLVF +LLRL
Sbjct: 111 LNAVAGRLH-GSNLTGKILINDGKITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRL 169
Query: 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240
PR+L+ K AE+V++ELGLTKCENT++GN+FIRGISGGERKRVSIAHE+LINPSLL+
Sbjct: 170 PRSLTRDVKLRAAESVISELGLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLV 229
Query: 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299
LDEPTSGLD+TAA RLV TL L +GKT+VTS+HQPSSRV+QMFD VL+LSEG+CL+
Sbjct: 230 LDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFV 289
Query: 300 GKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLL 359
GKG +AM+YFESVGFSP+FPMNPADFLLDLANGV DGV+EREKPNV+ ++V +Y+TLL
Sbjct: 290 GKGRDAMAYFESVGFSPAFPMNPADFLLDLANGVCQTDGVTEREKPNVRQTLVTAYDTLL 349
Query: 360 APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIG-FATWLNQFSILLHRS 418
AP+V+ C+E + P+ A TR + + ATW +Q ILLHR
Sbjct: 350 APQVKT-CIEVSHFPQDNARFV-----------KTRVNGGGITTCIATWFSQLCILLHRL 397
Query: 419 LKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVF 478
LKER+HES + LR+FQV+AAS+L G+MWWHSD+R+V DRLGL FFIS+FWGVLPS NAVF
Sbjct: 398 LKERRHESFDLLRIFQVVAASILCGLMWWHSDYRDVHDRLGLLFFISIFWGVLPSFNAVF 457
Query: 479 AFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFV 538
FPQERAIF +ERASGMYTLSSYFM+ ++G L +EL+LP FL YWM +P + F+
Sbjct: 458 TFPQERAIFTRERASGMYTLSSYFMAHVLGSLSMELVLPASFLTFTYWMVYLRPGIVPFL 517
Query: 539 QTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIK 598
TL VLL YVL SQGLGLALGA IMDAK+ASTIVTVTMLAFVLTGGYYV+K+PS + W+K
Sbjct: 518 LTLSVLLLYVLASQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGYYVNKVPSGMVWMK 577
Query: 599 YISSTYYNYRLLINVQYGDGKKISYLLGCFDRHG-----SSRDASCKFVEEDIVGQISPL 653
Y+S+T+Y YRLL+ +QYG G++I +LGC D G ++ A C+FVEE+++G +
Sbjct: 578 YVSTTFYCYRLLVAIQYGSGEEILRMLGC-DSKGKQGASAATSAGCRFVEEEVIGDVGMW 636
Query: 654 VSIGAFLSMFVGYRLLAYLALRRLK 678
S+G MF GYR+LAYLALRR+K
Sbjct: 637 TSVGVLFLMFFGYRVLAYLALRRIK 661
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 679 | ||||||
| TAIR|locus:2016089 | 662 | ABCG25 "ATP-binding casette G2 | 0.921 | 0.945 | 0.609 | 4e-209 | |
| TAIR|locus:2028656 | 648 | ABCG14 "ATP-binding cassette G | 0.759 | 0.796 | 0.525 | 2.8e-152 | |
| TAIR|locus:2144133 | 751 | ABCG22 "ATP-binding cassette G | 0.759 | 0.687 | 0.483 | 8.4e-136 | |
| TAIR|locus:2090009 | 685 | ABCG26 "ATP-binding cassette G | 0.449 | 0.445 | 0.452 | 8e-110 | |
| FB|FBgn0020445 | 1017 | E23 "Early gene at 23" [Drosop | 0.347 | 0.232 | 0.462 | 6.6e-84 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.402 | 0.344 | 0.432 | 6.6e-79 | |
| ZFIN|ZDB-GENE-070424-84 | 673 | abcg1 "ATP-binding cassette, s | 0.344 | 0.347 | 0.398 | 1.4e-74 | |
| UNIPROTKB|E1BYW4 | 644 | ABCG1 "Uncharacterized protein | 0.344 | 0.363 | 0.398 | 4.7e-74 | |
| UNIPROTKB|F1PPV0 | 689 | ABCG1 "Uncharacterized protein | 0.344 | 0.339 | 0.394 | 5.9e-74 | |
| UNIPROTKB|P45844 | 678 | ABCG1 "ATP-binding cassette su | 0.344 | 0.345 | 0.390 | 2e-73 |
| TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2022 (716.8 bits), Expect = 4.0e-209, P = 4.0e-209
Identities = 397/651 (60%), Positives = 492/651 (75%)
Query: 23 DCSP--ARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRXXXXXXX 80
D SP ++D L SSC+PITLKF+DVCYR+KI S + + +++
Sbjct: 15 DSSPRLSQDPREPRSLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDE 74
Query: 81 XXXXXAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT 140
+ERTIL+G+TGM+SPGE +A+LGPSGSGKST+LN +AGRLH G LTG IL
Sbjct: 75 TRST----EERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLH-GSNLTGKILI 129
Query: 141 NNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
N+ K TK KRTGFV QDD+LYPHLTVRETLVF +LLRLPR+L+ K AE+V++EL
Sbjct: 130 NDGKITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISEL 189
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GLTKCENT++GN+FIRGISGGERKRVSIAHE+LINPSLL+LDEPTSGLD+TAA RLV TL
Sbjct: 190 GLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTL 249
Query: 261 GSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFP 319
L +GKT+VTS+HQPSSRV+QMFD VL+LSEG+CL+ GKG +AM+YFESVGFSP+FP
Sbjct: 250 AGLAHGKGKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFP 309
Query: 320 MNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREAL 379
MNPADFLLDLANGV DGV+EREKPNV+ ++V +Y+TLLAP+V+ C+E + P+ A
Sbjct: 310 MNPADFLLDLANGVCQTDGVTEREKPNVRQTLVTAYDTLLAPQVKT-CIEVSHFPQDNAR 368
Query: 380 LTGXXXXXXXXXXXTRSHNNNVIG-FATWLNQFSILLHRSLKERKHESLNTLRVFQVIAA 438
TR + + ATW +Q ILLHR LKER+HES + LR+FQV+AA
Sbjct: 369 FV-----------KTRVNGGGITTCIATWFSQLCILLHRLLKERRHESFDLLRIFQVVAA 417
Query: 439 SLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTL 498
S+L G+MWWHSD+R+V DRLGL FFIS+FWGVLPS NAVF FPQERAIF +ERASGMYTL
Sbjct: 418 SILCGLMWWHSDYRDVHDRLGLLFFISIFWGVLPSFNAVFTFPQERAIFTRERASGMYTL 477
Query: 499 SSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLAL 558
SSYFM+ ++G L +EL+LP FL YWM +P + F+ TL VLL YVL SQGLGLAL
Sbjct: 478 SSYFMAHVLGSLSMELVLPASFLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQGLGLAL 537
Query: 559 GAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDG 618
GA IMDAK+ASTIVTVTMLAFVLTGGYYV+K+PS + W+KY+S+T+Y YRLL+ +QYG G
Sbjct: 538 GAAIMDAKKASTIVTVTMLAFVLTGGYYVNKVPSGMVWMKYVSTTFYCYRLLVAIQYGSG 597
Query: 619 KKISYLLGCFDR--HGSSR--DASCKFVEEDIVGQISPLVSIGAFLSMFVG 665
++I +LGC + G+S A C+FVEE+++G + S+G MF G
Sbjct: 598 EEILRMLGCDSKGKQGASAATSAGCRFVEEEVIGDVGMWTSVGVLFLMFFG 648
|
|
| TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1424 (506.3 bits), Expect = 2.8e-152, Sum P(2) = 2.8e-152
Identities = 280/533 (52%), Positives = 373/533 (69%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
K +E+TILNGITGMV PGE LA+LGPSGSGK+T+L+ L GRL + +G ++ N +
Sbjct: 75 KSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKT--FSGKVMYNGQPFS 132
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
I +RTGFV QDD+LYPHLTV ETL F +LLRLP +L+ EK + V+AELGL +C
Sbjct: 133 GCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCT 192
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
N++IG RGISGGE+KRVSI EMLINPSLL+LDEPTSGLDST A+R+V+T+ L
Sbjct: 193 NSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASG 252
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFL 326
G+T+VT++HQPSSR+Y MFDKV++LSEG +Y+G S A+ YF S+GFS S +NPAD L
Sbjct: 253 GRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLL 312
Query: 327 LDLANGVYH--LDGVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGXX 384
LDLANG+ SE+E+ VK ++V++Y ++ K++A A +
Sbjct: 313 LDLANGIPPDTQKETSEQEQKTVKETLVSAYEKNISTKLKAELCNAES---------HSY 363
Query: 385 XXXXXXXXXTRSHNNNVIGFATWLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGI 444
+S TW QF++LL R ++ER+ ES N LR+FQVI+ + L G+
Sbjct: 364 EYTKAAAKNLKSEQ----WCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLGGL 419
Query: 445 MWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMS 504
+WWH+ +QDR L FF SVFWG P NAVF FPQE+ + +KER+SGMY LSSYFM+
Sbjct: 420 LWWHTPKSHIQDRTALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMA 479
Query: 505 RIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMD 564
R +GDLP+EL LPT F+ IIYWM G KP+ F+ +LLV+L VLV+QGLGLA GA++M+
Sbjct: 480 RNVGDLPLELALPTAFVFIIYWMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAFGALLMN 539
Query: 565 AKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGD 617
KQA+T+ +VT L F++ GGYYV ++P I W+KY+S +YY Y+LL+ +QY D
Sbjct: 540 IKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYTD 592
|
|
| TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1303 (463.7 bits), Expect = 8.4e-136, Sum P(2) = 8.4e-136
Identities = 264/546 (48%), Positives = 376/546 (68%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP-TKH 148
E+ IL GI+G V+PGE+LA++GPSGSGK+T+L++LAGR+ Q TG +T N+KP +K+
Sbjct: 176 EKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSS--TGGSVTYNDKPYSKY 233
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+ + GFVTQDD+L+PHLTV+ETL + + LRLP+TL+ ++K A V+ ELGL +C++T
Sbjct: 234 LKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDT 293
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+IG +F+RG+SGGERKRVSI +E++INPSLL+LDEPTSGLDST A R + L + + GK
Sbjct: 294 MIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGK 353
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLD 328
T++T++HQPSSR++ FDK+++L G LYFGK SEA+ YF S+G SP MNPA+FLLD
Sbjct: 354 TVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLD 413
Query: 329 LANGVYH-------LD-----GVSEREKPNVKSSIVASYNTLL-APKVRAACMEATTLPR 375
LANG + LD G S RE K S A + L+ A + R A E
Sbjct: 414 LANGNINDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQE------ 467
Query: 376 REALLTGXXXXXXXXXXXTRSHNNNVIGFAT-WLNQFSILLHRSLKERKHESLNTLRVFQ 434
++ LL TR + T W Q+ IL R LKER+HE + LRV Q
Sbjct: 468 KKKLLDPVPLDEEAKAKSTRLKRQ----WGTCWWEQYCILFCRGLKERRHEYFSWLRVTQ 523
Query: 435 VIAASLLSGIMWWHSDFRE---VQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKER 491
V++ +++ G++WW SD R +QD+ GL FFI+VFWG P A+FAFPQERA+ KER
Sbjct: 524 VLSTAVILGLLWWQSDIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKER 583
Query: 492 ASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVS 551
A+ MY LS+YF++R DLP++ ILP++FL+++Y+MTG + F ++L + ++ +
Sbjct: 584 AADMYRLSAYFLARTTSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAA 643
Query: 552 QGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLI 611
QGLGLA+GAI+MD K+A+T+ +VT++ F+L GG++V K+P I+WI+Y+S Y+ Y+LL+
Sbjct: 644 QGLGLAIGAILMDLKKATTLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYHTYKLLL 703
Query: 612 NVQYGD 617
VQY D
Sbjct: 704 KVQYQD 709
|
|
| TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 144/318 (45%), Positives = 206/318 (64%)
Query: 19 YQSNDCSPARDLLHQLPS---LMSSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRXX 75
Y N S D+ + S L + PI LKF DV Y+++ + S + + + ++
Sbjct: 35 YLRNQYSSEIDIDEEFVSTYPLEDAPLPIFLKFEDVEYKVRNSHASS-ANLVKTMVSKVV 93
Query: 76 XXXXXXXXXXAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT 135
+ IL GITG PGEILA++GPSGSGK+T+L ++ GRL +
Sbjct: 94 THTNPDPDGY-----KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRLTDN--VK 146
Query: 136 GTILTNNNKP-TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE 194
G LT N+ P + + +R GFVTQDD+L P LTV ETL F + LRLP ++S ++K + E
Sbjct: 147 GK-LTYNDIPYSPSVKRRIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIE 205
Query: 195 AVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
++ ELGL +C T +G F++GISGGERKR SIA+E+L++PSLL+LDEPTSGLDST+A
Sbjct: 206 MIIKELGLERCRRTRVGGGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSAT 265
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314
+L+ L + + G+T++T++HQPSSR++ MFDK+L++SEG ++GK E+M YF S+
Sbjct: 266 KLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRI 325
Query: 315 SPSFPMNPADFLLDLANG 332
P MNPA+FLLDLA G
Sbjct: 326 LPEIAMNPAEFLLDLATG 343
|
|
| FB|FBgn0020445 E23 "Early gene at 23" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 6.6e-84, Sum P(2) = 6.6e-84
Identities = 111/240 (46%), Positives = 160/240 (66%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
ER IL+ ++G VSP E+LAI+GPSGSGK+T+L+ L+G+ H +G++ N TK
Sbjct: 364 ERQILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQRHID---SGSVFLNREPLTKKW 420
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+R G+V Q++I +P LT+RET+V+ +LLRLP ++ EK + ++ L L C+ T
Sbjct: 421 RRRIGYVLQEEIFFPQLTLRETVVYTALLRLPESMPRAEKMRQVDHILEALELGCCQQTK 480
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGK 268
G+ RG+SGGE+KR +IA E+L NP L++LDEPTSGLDS +A L+ L Q K
Sbjct: 481 FGDYLNRGLSGGEKKRANIACELLTNPLLMLLDEPTSGLDSHSAISLMKVLKRYAQLEQK 540
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLD 328
TIV S+HQPSS+++ MFDK+L+L +GR YFG +FE +G + NPADF+L+
Sbjct: 541 TIVISVHQPSSQMFHMFDKLLLLHQGRTAYFGDVQNIYRHFEDIGVTIKPHYNPADFVLE 600
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 122/282 (43%), Positives = 185/282 (65%)
Query: 57 IENKSKEGSSFR-RI---FNRXXXXXXXXXXXXAKIQERTILNGITGMVSPGEILAILGP 112
+ K+K+ S+F+ RI F K + IL I G + G I AI+GP
Sbjct: 98 LNKKNKKRSTFKNRIDFSFKDINHYVQITEKGKKKKISKQILTNINGHIESGTIFAIMGP 157
Query: 113 SGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT-GFVTQDDILYPHLTVRET 171
SG+GK+T+L++LA RL+ +G +GT+ N NK +I K+ G+VTQ D L P LTVRET
Sbjct: 158 SGAGKTTLLDILAHRLNI-NG-SGTMYLNGNKSDFNIFKKLCGYVTQSDSLMPSLTVRET 215
Query: 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG--NSFIRGISGGERKRVSIA 229
L F + L++PR + KEK + ++ E+GL +C +T++G ++ IRGISGGER+RV+I+
Sbjct: 216 LNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTIS 275
Query: 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVL 289
E+L PS+++LDEPTSGLD++ ++ ++S L L + G+TI+ ++HQP S +Y MFD +L
Sbjct: 276 IELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQPRSNIYDMFDNLL 335
Query: 290 VLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLAN 331
+L +G +Y+GK ++A+ YF + G+ S NPADF LDL N
Sbjct: 336 LLGDGNTIYYGKANKALEYFNANGYHCSEKTNPADFFLDLIN 377
|
|
| ZFIN|ZDB-GENE-070424-84 abcg1 "ATP-binding cassette, sub-family G (WHITE), member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 98/246 (39%), Positives = 169/246 (68%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN-KPTKHI 149
+T+L GI+G + G ++AI+GPSG+GKST++N+LAG ++ G+ G IL N + + +
Sbjct: 105 KTLLKGISGNFTGGALVAIMGPSGAGKSTLMNILAG--YRETGMKGEILINGHPRDLRSF 162
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
K + ++ QDD+L PHLTV+E ++ + L+L + + + ++ LGL +C T
Sbjct: 163 RKVSCYIMQDDMLLPHLTVQEAMMVSANLKLQE--KDEGRREMVREILTALGLLECAKTR 220
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+ +SGG+RKR++IA E++ NP ++ DEPTSGLDS++ +++VS + +L Q G+T
Sbjct: 221 TSH-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSSSCFQVVSLMKALAQGGRT 275
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFS-PSFPMNPADFLLD 328
++ ++HQPS++V+++FDK+ VLS+G+C+Y GK S + Y +G S P++ NPADF+++
Sbjct: 276 VICTIHQPSAKVFELFDKLYVLSQGQCIYRGKVSSLIPYLRDLGLSCPTYH-NPADFIME 334
Query: 329 LANGVY 334
+A+G Y
Sbjct: 335 VASGEY 340
|
|
| UNIPROTKB|E1BYW4 ABCG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 98/246 (39%), Positives = 169/246 (68%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN-KPTKHI 149
+T+L GI+G S GE++AI+GPSG+GKST++N+LAG ++ G+ G IL N + +
Sbjct: 76 KTLLKGISGKFSSGELVAIMGPSGAGKSTLMNILAG--YRETGMKGEILINGQPRDLRSF 133
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
K + ++ QDD+L PHLTV+E ++ + L+L + + + + ++ LGL C NT
Sbjct: 134 RKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE--KDEGRREMVKEILTALGLLTCANTR 191
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
G+ +SGG+RKR++IA E++ NP ++ DEPTSGLDS + +++VS + +L Q G++
Sbjct: 192 TGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKALAQGGRS 246
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFS-PSFPMNPADFLLD 328
I+ ++HQPS++++++FD++ VLS+G+C+Y GK + Y +G + P++ NPADF+++
Sbjct: 247 IICTIHQPSAKLFELFDQLYVLSQGQCIYRGKVLNLVPYLRDLGLNCPTYH-NPADFVME 305
Query: 329 LANGVY 334
+A+G Y
Sbjct: 306 VASGEY 311
|
|
| UNIPROTKB|F1PPV0 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 499 (180.7 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 97/246 (39%), Positives = 169/246 (68%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTKHI 149
+T+L GI+G + GE++AI+GPSG+GKST++N+LAG ++ G+ G +L N + +
Sbjct: 109 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG--YRETGMKGAVLINGLPRDLRCF 166
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
K + ++ QDD+L PHLTV+E ++ + L+L + + + + ++ LGL C NT
Sbjct: 167 RKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE--KDEGRREMVKEILTALGLLSCANTR 224
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
G+ +SGG+RKR++IA E++ NP ++ DEPTSGLDS + +++VS + L Q G++
Sbjct: 225 TGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRS 279
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFS-PSFPMNPADFLLD 328
I+ ++HQPS++++++FD++ VLS+G+C+Y GK S + Y +G + P++ NPADF+++
Sbjct: 280 IICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYH-NPADFVME 338
Query: 329 LANGVY 334
+A+G Y
Sbjct: 339 VASGEY 344
|
|
| UNIPROTKB|P45844 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 96/246 (39%), Positives = 168/246 (68%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTKHI 149
+T+L GI+G + GE++AI+GPSG+GKST++N+LAG ++ G+ G +L N + +
Sbjct: 98 KTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAG--YRETGMKGAVLINGLPRDLRCF 155
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
K + ++ QDD+L PHLTV+E ++ + L+L + + + + ++ LGL C NT
Sbjct: 156 RKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE--KDEGRREMVKEILTALGLLSCANTR 213
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
G+ +SGG+RKR++IA E++ NP ++ DEPTSGLDS + +++VS + L Q G++
Sbjct: 214 TGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRS 268
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFS-PSFPMNPADFLLD 328
I+ ++HQPS++++++FD++ VLS+G+C+Y GK + Y +G + P++ NPADF+++
Sbjct: 269 IICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYH-NPADFVME 327
Query: 329 LANGVY 334
+A+G Y
Sbjct: 328 VASGEY 333
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P10090 | WHITE_DROME | No assigned EC number | 0.3154 | 0.8541 | 0.8442 | yes | no |
| Q84TH5 | AB25G_ARATH | No assigned EC number | 0.6072 | 0.9631 | 0.9879 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 679 | |||
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-137 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-73 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-73 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-73 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-60 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-56 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-54 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-53 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-48 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-39 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-36 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-35 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-35 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-34 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-34 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-34 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-34 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-34 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-33 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-33 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-32 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-32 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-31 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-30 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-30 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-30 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-29 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-29 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-28 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-28 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-28 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-27 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-27 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-27 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-27 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-27 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-26 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-26 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-26 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-26 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-26 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-26 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-26 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-26 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-25 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-25 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-25 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-25 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-25 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-25 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-25 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-24 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-24 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-24 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-24 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-24 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-24 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-24 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-23 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-23 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-23 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-23 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-23 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-23 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 9e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-22 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-22 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-22 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-22 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-22 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-22 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-22 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-22 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-22 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-22 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-22 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-22 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-22 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-21 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-21 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-21 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-21 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-21 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-21 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-21 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-21 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-21 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-21 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-20 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-20 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-20 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-20 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-20 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-20 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-20 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-19 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-19 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-19 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-19 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-19 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-19 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-19 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 7e-19 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-18 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-18 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-18 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-18 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-18 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-18 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-18 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-17 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-17 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-17 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-17 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-17 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-16 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-16 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-16 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-16 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-16 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-16 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-16 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-16 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 9e-16 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-15 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-15 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-15 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-15 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-15 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-15 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-15 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 6e-15 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-15 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-15 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-15 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-15 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 8e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-15 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-15 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-14 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-14 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-14 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-14 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-14 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-14 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-14 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-14 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-14 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-14 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-14 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-14 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-14 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-14 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-14 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-14 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-14 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-13 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-13 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-13 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 5e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-13 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-12 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-12 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-12 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-12 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-12 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-12 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-11 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-11 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-11 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-11 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-11 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-11 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 9e-11 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-10 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 3e-10 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-10 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-10 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-10 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-10 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-10 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 9e-10 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 1e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-09 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-09 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-09 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-09 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-09 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-09 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-08 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-08 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 1e-08 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-08 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-08 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-08 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 4e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-08 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-07 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 8e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 9e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-06 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 1e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 2e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 8e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 9e-06 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 2e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-05 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 5e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 7e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-05 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-04 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-04 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 4e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 4e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 5e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 5e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-04 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 8e-04 | |
| COG0563 | 178 | COG0563, Adk, Adenylate kinase and related kinases | 8e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.001 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 0.002 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.002 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.003 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 1106 bits (2863), Expect = 0.0
Identities = 509/680 (74%), Positives = 571/680 (83%), Gaps = 22/680 (3%)
Query: 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPS-LMSSCYPITLKFIDVCYRIKIEN 59
MP FD VE N D P +S P++D LPS L+SSCYPITLKF+DVCYR+K EN
Sbjct: 1 MPVFDGVENQN----DGPDRSK--PPSQDS-RDLPSLLLSSCYPITLKFMDVCYRVKFEN 53
Query: 60 KSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKST 119
+GS+ +RI S T +IQERTILNG+TGM SPGEILA+LGPSGSGKST
Sbjct: 54 MKNKGSNIKRILGHKPKISD----ETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109
Query: 120 MLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179
+LN LAGR+ QG+ TGTIL NN KPTK I KRTGFVTQDDILYPHLTVRETLVFCSLLR
Sbjct: 110 LLNALAGRI-QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLR 168
Query: 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239
LP++L+ +EK +AE+V++ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL
Sbjct: 169 LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228
Query: 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299
ILDEPTSGLD+TAAYRLV TLGSL Q+GKTIVTSMHQPSSRVYQMFD VLVLSEGRCL+F
Sbjct: 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFF 288
Query: 300 GKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLL 359
GKGS+AM+YFESVGFSPSFPMNPADFLLDLANGV DGVSEREKPNVK S+VASYNTLL
Sbjct: 289 GKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLL 348
Query: 360 APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSL 419
APKV+AA E + P+ A G S S++EH S + I +TW NQFSILL RSL
Sbjct: 349 APKVKAAI-EMSHFPQANARFVG----SASTKEHRSS---DRISISTWFNQFSILLQRSL 400
Query: 420 KERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFA 479
KERKHES NTLRVFQVIAA+LL+G+MWWHSDFR+VQDRLGL FFIS+FWGV PS N+VF
Sbjct: 401 KERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFV 460
Query: 480 FPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQ 539
FPQERAIF+KERASGMYTLSSYFM+RI+GDLP+ELILPT+FL + YWM G KPE AF+
Sbjct: 461 FPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLL 520
Query: 540 TLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKY 599
TLLVLLGYVLVSQGLGLALGA IMDAK+ASTIVTVTMLAFVLTGG+YVHK+PSC+AWIKY
Sbjct: 521 TLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKY 580
Query: 600 ISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVSIGAF 659
IS+T+Y+YRLLINVQYG+GK+IS LLGC HGS R ASCKFVEED+ GQISP S+
Sbjct: 581 ISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDR-ASCKFVEEDVAGQISPATSVSVL 639
Query: 660 LSMFVGYRLLAYLALRRLKA 679
+ MFVGYRLLAYLALRR+K
Sbjct: 640 IFMFVGYRLLAYLALRRIKH 659
|
Length = 659 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 416 bits (1071), Expect = e-137
Identities = 193/601 (32%), Positives = 308/601 (51%), Gaps = 40/601 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KH 148
+ +L ++G+ PGE+LA++G SG+GK+T++N LA R +G +G++L N K
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+ + +V QDD+ P LTVRE L+F + LR+PR ++ KEK + V+ LGL KC NT
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 209 IIGN-SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
IG ++G+SGGERKR++ A E+L +P LL DEPTSGLDS AY +V L L Q+G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLL 327
KTI+ ++HQPSS ++++FDK+++++EGR Y G +A+ +F +G NPADF +
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276
Query: 328 DLANGVYHLDGVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSS 387
+ + SE E I S+ A + R+ L+ + S
Sbjct: 277 QVLAVIPG----SENESRERIEKICDSF--------------AVSDIGRDMLVNTNLWSG 318
Query: 388 HSSEEHTRSHNNNVIGF-ATWLNQFSILLHRS-LKERKHESLNTLRVFQVIAASLLSGIM 445
+ S N IG+ A+W QF LL RS L + L +R+ Q + ++L G++
Sbjct: 319 KAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLI 378
Query: 446 WWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFM 503
+ + VQ+ G F + F E +F++E SG+Y +S+YF+
Sbjct: 379 YLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFL 438
Query: 504 SRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIM 563
++ I +LP+ +ILP +F I YWM G + F+ L ++ V+ G +
Sbjct: 439 AKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFS 498
Query: 564 DAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYR-LLINVQYGDGKK 620
A T+ ++ F+L GG++++ +P W+ Y+S Y LLIN Q+ D
Sbjct: 499 STSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLIN-QWSDVDN 557
Query: 621 ISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLVS-----IGAFLSMFVGYRLLAYLALR 675
I C ++ C E I+ +S + + + + +RLLAY ALR
Sbjct: 558 IE----CTS---ANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALR 610
Query: 676 R 676
Sbjct: 611 I 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 258 bits (660), Expect = 2e-73
Identities = 158/551 (28%), Positives = 241/551 (43%), Gaps = 42/551 (7%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
IL + G++ PGE+ +LG GSG ST+L +A H ++T + + I
Sbjct: 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI 132
Query: 150 SKR-TGFV---TQDDILYPHLTVRETLVFCSLLRLPRT----LSTKE-KTSIAEAVMAEL 200
K G V + D+ +PHLTV ETL F + + P+ +S +E IA+ MA
Sbjct: 133 KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY 192
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL+ NT +GN F+RG+SGGERKRVSIA L + D T GLDS A + L
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 261 GSLVQRGKTIVT-SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFP 319
+ T +++Q S Y++FDKV+VL EG +YFG +A YFE +GF
Sbjct: 253 KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312
Query: 320 MNPADFLLDLANGVYHL----------DGVSEREKPNVKSSIVASYNTLLAPKVRAACME 369
ADFL L + E E S A + +
Sbjct: 313 QTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372
Query: 370 ATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKERKHESLNT 429
T RE+ + S + S +T S + Q L R+ K T
Sbjct: 373 DTKEAYRESHVAKQSKRTRPSSPYTVS----------FSMQVKYCLARNFLRMKGNPSFT 422
Query: 430 L-RVFQVIAASLLSGIMWWH-----SDFREVQDRLGLFFFISVFWGVLPSVNAVFAFPQE 483
L VF I +L+ ++++ SDF R G FF ++ + S+ + + +
Sbjct: 423 LFMVFGNIIMALILSSVFYNLPKNTSDFYS---RGGALFF-AILFNAFSSLLEIASMYEA 478
Query: 484 RAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLV 543
R I K R +Y S+ ++ II ++P ++I VF II+Y+M F+ F LL+
Sbjct: 479 RPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538
Query: 544 LLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYIS 601
L L L ++GA+ +A T + +LA + G+ + M WI Y++
Sbjct: 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVN 598
Query: 602 STYYNYRLLIN 612
Y + L+
Sbjct: 599 PLAYAFESLMV 609
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 2e-73
Identities = 96/212 (45%), Positives = 135/212 (63%), Gaps = 5/212 (2%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
ILN ++ V G+++AILG SGSGK+T+L+ ++GR+ G +G IL N
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 150 S-KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
K +V QDDIL P LTVRETL + ++LRLPR S + E V L T
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRDLALT 134
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
IG + ++GISGGER+RVSIA ++L +P +LILDEPTSGLDS A LVSTL L +R +
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
++ ++HQP S ++++FD++L+LS G +Y G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 8e-73
Identities = 97/211 (45%), Positives = 132/211 (62%), Gaps = 39/211 (18%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTKHI 149
+ +L ++G PGE+ AI+GPSG+GKST+LN LAGR G G++G +L N +
Sbjct: 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSF 80
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
K G+V QDDIL+P LTVRETL+F + LR
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------------ 110
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
G+SGGERKRVSIA E++ NPSLL LDEPTSGLDS++A +++S L L G+T
Sbjct: 111 -------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRT 163
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
I+ S+HQPSS ++++FDK+L+LS+GR +YFG
Sbjct: 164 IICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 1e-60
Identities = 148/561 (26%), Positives = 258/561 (45%), Gaps = 64/561 (11%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
K ++R ILN + G V PG + A++G SG+GK+T+LNVLA R+ G G L N
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+ G+V Q D+ P TVRE+L F + LR P+++S EK E V+ L +
Sbjct: 832 SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYA 891
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI-LDEPTSGLDSTAAYRLVSTLGSLVQ 265
+ ++G G++ +RKR++I E++ P LL+ LDEPTSGLDS A+ + + L
Sbjct: 892 DAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD 950
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEG-RCLYF---GKGSEAM-SYFESVGFSPSFP- 319
G+ I+ ++HQPS+ +++ FD++L+L +G + +YF G+ S + +YFE G
Sbjct: 951 HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPED 1010
Query: 320 MNPADFLLDL--------ANGVYHLDGVSEREKPNVKSSIVASYNTLLAPKVRAACMEAT 371
NPA+++L++ AN YH + E VK+
Sbjct: 1011 ANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNE--------------------- 1049
Query: 372 TLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKER-KHESLNTL 430
L R EA L+ + + + A+ QF ++L R+ ++ +
Sbjct: 1050 -LDRLEAELSKAEDDNDPDALSKYA--------ASLWYQFKLVLWRTFQQYWRTPDYLYS 1100
Query: 431 RVFQVIAASLLSGIMWWHSD--FREVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFM 488
+ F I A+L G ++ + +Q+++ F +V + L Q +
Sbjct: 1101 KFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEV 1160
Query: 489 KERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGF-----KPEFIA--FVQTL 541
+ER S ++ ++ ++I ++P L+ T+F I Y+ GF K + V
Sbjct: 1161 RERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFW 1220
Query: 542 LVLLGYVLVSQGLGLALGAIIMDAKQASTIVTV---TMLAF--VLTGGYYVHKMPSCIAW 596
L+ + L LG + + +A A+ + ++ L+F VL +MP +
Sbjct: 1221 LLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAP---PSRMPGFWIF 1277
Query: 597 IKYISSTYYNYRLLINVQYGD 617
+ S Y + L++ D
Sbjct: 1278 MYRCSPFTYLVQALLSTGLAD 1298
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 1e-56
Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 16/229 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
++T L+G++ V PGEI +LGP+G+GK+T+L +LAG L +G IL K
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEP 73
Query: 150 S---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+ +R G+V Q+ LYP LTVRE L F + L LS +E E ++ GL
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLED-- 128
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
N +R +SGG ++R+SIA +L +P LLILDEPTSGLD + + L L +
Sbjct: 129 ---KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 267 GK-TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314
G TI+ S H ++ D+V++L++G+ + G E F G
Sbjct: 186 GGVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 183 bits (468), Expect = 3e-54
Identities = 85/215 (39%), Positives = 122/215 (56%), Gaps = 39/215 (18%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
K +R +LN I+G V PG + A++G SG+GK+T+L+VLAGR G +TG IL N
Sbjct: 16 KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLD 74
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
K+ + TG+V Q D+ P+LTVRE L F +LLR
Sbjct: 75 KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--------------------------- 107
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
G+S +RKR++I E+ PS+L LDEPTSGLDS AAY +V L L
Sbjct: 108 ----------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS 157
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCLYFG 300
G+ I+ ++HQPS+ +++ FD++L+L G+ +YFG
Sbjct: 158 GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 4e-53
Identities = 155/544 (28%), Positives = 280/544 (51%), Gaps = 48/544 (8%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI-LTNNNKPTKHISK 151
+L +TG PG + A++G SG+GK+T+++VLAGR G+ + G I ++ K + ++
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIRISGFPKKQETFAR 953
Query: 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG 211
+G+ Q+DI P +TVRE+L++ + LRLP+ +S +EK + VM + L ++ I+G
Sbjct: 954 ISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG 1013
Query: 212 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
+ G+S +RKR++IA E++ NPS++ +DEPTSGLD+ AA ++ T+ + V G+T+V
Sbjct: 1014 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1073
Query: 272 TSMHQPSSRVYQMFDKVLVLSE-GRCLYFG----KGSEAMSYFESVGFSPSFP--MNPAD 324
++HQPS +++ FD++L++ G+ +Y G + + YFE++ P NPA
Sbjct: 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133
Query: 325 FLLDLANGVYHLD-GVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGS 383
++L++++ + G+ E + KSS + N +A E +T P + L +
Sbjct: 1134 WMLEVSSLAAEVKLGIDFAE--HYKSSSLYQRN-------KALVKELSTPPPGASDLYFA 1184
Query: 384 SSSSHSSEEHTRSHNNNVIGFATWLNQF-SILLHRSLKERKHESLNTLRVFQVIAASLLS 442
+ S S TW QF S L + + N +R F +AA+L+
Sbjct: 1185 TQYSQS----------------TW-GQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMV 1227
Query: 443 GIMWWH-----SDFREVQDRLGLFFFISVFWGV--LPSVNAVFAFPQERAIFMKERASGM 495
G ++W S+ ++ +G + +F G+ +V + A ER +F +ERA+GM
Sbjct: 1228 GTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAV--ERTVFYRERAAGM 1285
Query: 496 YTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLG 555
Y+ Y +++++ ++P LI T + +I+Y M F+ F + L G
Sbjct: 1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYG 1345
Query: 556 LALGAIIMDAKQASTIVTVTMLAFVLTGGYYV--HKMPSCIAWIKYISSTYYNYRLLINV 613
+ ++ + + A+ F L G+++ K+P W +I + LI
Sbjct: 1346 MMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVS 1405
Query: 614 QYGD 617
QYGD
Sbjct: 1406 QYGD 1409
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 1e-48
Identities = 76/218 (34%), Positives = 107/218 (49%), Gaps = 35/218 (16%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN--K 144
+ IL +G+V PGE++ +LG GSG ST+L LA R + G I N K
Sbjct: 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75
Query: 145 PTKHISKRTG-FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+V+++D+ +P LTVRETL F +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
GN F+RGISGGERKRVSIA ++ S+L D T GLDS+ A ++ + ++
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 264 VQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
T S++Q S +Y +FDKVLVL EGR +Y+G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 4e-39
Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 25/216 (11%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN----NK 144
R L+ I+ + GE + I+GP+GSGKST+L +L G L +G +L +
Sbjct: 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTKL 68
Query: 145 PTKHISKRTGFVTQDDILYP-----HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199
K + ++ G V Q+ P TV E + F L L L +E E +
Sbjct: 69 SLKELRRKVGLVFQN----PDDQFFGPTVEEEVAF-GLENL--GLPEEEIEERVEEALEL 121
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
+GL + +SGG+++RV+IA + ++P +L+LDEPT+GLD L+
Sbjct: 122 VGLEGLRDR-----SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L L GKTI+ H + ++ D+V+VL +G+
Sbjct: 177 LKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 7/211 (3%)
Query: 410 QFSILLHRSLKERKHESLNTL--RVFQVIAASLLSGIMWWHSDFRE-VQDRLGLFFFISV 466
Q LL R R + L R+ Q + +L+ G ++ + D +R GL FF +
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPGLLFFSIL 61
Query: 467 FWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYW 526
F F +ER + +E AS +Y+ S+Y +++I+ +LP+ L+ +FL+I+Y+
Sbjct: 62 FNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVYF 121
Query: 527 MTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYY 586
M G F LLVLL L + GLGL + A+ + AS I + +L +L G++
Sbjct: 122 MVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGFF 179
Query: 587 --VHKMPSCIAWIKYISSTYYNYRLLINVQY 615
V MP + WI Y++ Y L ++
Sbjct: 180 IPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-35
Identities = 89/278 (32%), Positives = 151/278 (54%), Gaps = 35/278 (12%)
Query: 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP 145
AK + TIL +G++ P + +LGP SGK+T+L LAG+L ++G I N +
Sbjct: 173 AKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRL 232
Query: 146 TKHISKRT-GFVTQDDILYPHLTVRETLVFCSLLR-------LPRTLSTKE--------- 188
+ + ++T +++Q+D+ +TV+ETL F + + L L+ +E
Sbjct: 233 NEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEA 292
Query: 189 ------KTSIAEAVMAE---------LGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233
K + E V + LGL C++TI+G+ IRGISGG++KRV+ EM+
Sbjct: 293 EVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMI 351
Query: 234 INPS-LLILDEPTSGLDSTAAYRLVSTLGSLVQRGK-TIVTSMHQPSSRVYQMFDKVLVL 291
+ P+ L +DE ++GLDS+ Y++V L +V + T++ S+ QP+ + +FD +++L
Sbjct: 352 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL 411
Query: 292 SEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDL 329
SEG+ +Y G + +FES GF ADFL ++
Sbjct: 412 SEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449
|
Length = 1470 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-35
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 15/212 (7%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHI 149
L+ ++ V PGE LA+LGPSG GK+T+L ++AG R G L P +
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER-- 71
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+ G V QD L+PHLTV E + F L+L R + E + ++ +GL
Sbjct: 72 -RNIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGL-----EG 122
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL-VQRGK 268
+ N + +SGG+++RV++A + PSLL+LDEP S LD+ L L L + G
Sbjct: 123 LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
T + H + D++ V++EGR + G
Sbjct: 183 TTIYVTHDQEE-ALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-34
Identities = 67/212 (31%), Positives = 110/212 (51%), Gaps = 12/212 (5%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTKH 148
+ ++ ++ V GEI +LG +G+GK+T L +L G L G T I + K
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG-TAYINGYSIRTDRKA 72
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+ G+ Q D L+ LTVRE L F + L + L E E ++ LGLT N
Sbjct: 73 ARQSLGYCPQFDALFDELTVREHLRFYARL---KGLPKSEIKEEVELLLRVLGLTDKANK 129
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
R +SGG ++++S+A ++ PS+L+LDEPTSGLD A+ R + L V++G+
Sbjct: 130 -----RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP-ASRRAIWDLILEVRKGR 183
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
+I+ + H + D++ ++S+G+ G
Sbjct: 184 SIILTTHSMDE-AEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 1e-34
Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 51/212 (24%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
+ ++T L+ I+ V GEI +LGP+G+GK+T++ ++ G L +G I
Sbjct: 9 RYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIK 65
Query: 147 KH---ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
K + +R G++ ++ LY +LTVRE L
Sbjct: 66 KEPEEVKRRIGYLPEEPSLYENLTVRENLKL----------------------------- 96
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
SGG ++R+++A +L +P LLILDEPTSGLD + L L
Sbjct: 97 ---------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ GKTI+ S H ++ D+V +L+ GR
Sbjct: 142 KKEGKTILLSSHILEE-AERLCDRVAILNNGR 172
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-34
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 47/210 (22%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHG-LTGTILTNNNKPT 146
++T+LN ++ + GEI+A+LGPSGSGKST+L +AG G + G LT+
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL 71
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+ +R G V QD L+PHLTV E +
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------------- 99
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
G+SGG+++RV++A + ++P +L+LDEPTS LD + + L SL +
Sbjct: 100 ----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 267 -GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
G T+V H ++ D+V+VL +G+
Sbjct: 150 LGITVVLVTHDLDE-AARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 5e-34
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 14/209 (6%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
T L I+ V GE +A++GPSG GKST+L ++AG G +L + +P
Sbjct: 15 GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVL-VDGEPVTG 70
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
G+V Q D L P LTV + + L L + + E AE ++ +GL+ E
Sbjct: 71 PGPDRGYVFQQDALLPWLTVLDNVAL--GLEL-QGVPKAEARERAEELLELVGLSGFE-- 125
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-G 267
N++ +SGG R+RV++A + ++P +L+LDEP S LD+ +L L + + G
Sbjct: 126 ---NAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG 182
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296
KT++ H V+ + D+V+VLS
Sbjct: 183 KTVLLVTHDIDEAVF-LADRVVVLSARPG 210
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 7e-34
Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 15/213 (7%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILT--NNN 143
++ L + + GE +AI+GPSGSGKST+LN+L G G + G LT +
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEK 75
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ K K+ GFV Q+ L P LTV E + L+ S + AE ++ LGL
Sbjct: 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLE 132
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ +SGG+++RV+IA ++ NP +++ DEPT LDS A ++ L L
Sbjct: 133 D----RLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188
Query: 264 V-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+RGKTI+ H P + + D+V+ L +G+
Sbjct: 189 NKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 14/206 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
+L I V GE +AILGPSG GKST+L ++AG +G +L + +P
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLL-DGRPVTGP 70
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
G+V Q+D L P LTV + + L L R S E A+ ++ +GL E
Sbjct: 71 GPDIGYVFQEDALLPWLTVLDNVAL--GLEL-RGKSKAEARERAKELLELVGLAGFE--- 124
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GK 268
+ + +SGG R+RV+IA + P LL+LDEP LD+ L L L + K
Sbjct: 125 --DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRK 182
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEG 294
T++ H VY + D+V+VLS
Sbjct: 183 TVLLVTHDVDEAVY-LADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 5e-33
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 30/220 (13%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
++ L G++ + GE +AI+GPSGSGKST+LN+L G G + +
Sbjct: 15 EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG----EVRVDGTDISK 70
Query: 149 IS---------KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSI---AEAV 196
+S + GFV Q L P LT E + LP L+ K AE +
Sbjct: 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALEN------VELPLLLAGVPKKERRERAEEL 124
Query: 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+ +GL N +SGG+++RV+IA + +P +++ DEPT LDS +
Sbjct: 125 LERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 257 VSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ L L + G TIV H P + + D+++ L +G+
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGK 217
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 25/229 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN----NKP 145
+ IL+ ++ + GEI ILGP+GSGKST+L LAG L +G +L + +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLS 70
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLS----TKEKTSIAEAVMAELG 201
K ++K+ +V Q LTV E L R P +KE I E + LG
Sbjct: 71 PKELAKKLAYVPQSPSAPFGLTVYE---LVLLGRYPHLGLFGRPSKEDEEIVEEALELLG 127
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L + + +SGGER+RV IA + +L+LDEPTS LD ++ L
Sbjct: 128 LEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182
Query: 262 SLVQ-RGKTIVTSMHQP--SSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L + +G T+V +H ++R D +++L +G+ + G E ++
Sbjct: 183 DLNREKGLTVVMVLHDLNLAARYA---DHLILLKDGKIVAQGTPEEVLT 228
|
Length = 258 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-32
Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 13/216 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGT-ILTNNNKP 145
RT+L G+ V GEILAI+GPSGSGKST+L ++ G L G + G I +
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE 71
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ +R G + Q L+ LTV E + F LR LS +E I + +GL
Sbjct: 72 LYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLEAVGLRGA 129
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
E+ +SGG +KRV++A + ++P LL+ DEPT+GLD A+ + + SL +
Sbjct: 130 EDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184
Query: 266 R-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
G T + H + + + D++ VL +G+ + G
Sbjct: 185 ELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-32
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 21/224 (9%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT 146
+ L ++ + GE + ++GP+GSGKST+L +L G L G L + T++ K
Sbjct: 15 GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSL 74
Query: 147 KHISKRTGFVTQDDILYPHL-----TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ ++ G V Q+ P TV + + F L L L +E + +G
Sbjct: 75 LELRQKVGLVFQN----PDDQLFGPTVEDEVAFG-LENLG--LPREEIEERVAEALELVG 127
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L + + N +SGG+++RV+IA + + P +L+LDEPT+GLD L+ L
Sbjct: 128 LEELLDRPPFN-----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 262 SLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
L + GKTI+ H V + D+V+VL +G+ L G +E
Sbjct: 183 KLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225
|
Length = 235 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 22/225 (9%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HI 149
R +L I+ V GEI A++GP+G+GKST+L + G L + +G I K
Sbjct: 17 RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG-LLKPS--SGEIKIFGKPVRKRRK 73
Query: 150 SKRTGFVTQD---DILYPHLTVRETLVFCSLLRLPRT----LSTKEKTSIAEAVMAELGL 202
R G+V Q D +P +TV++ + L R + K+ + + +G+
Sbjct: 74 RLRIGYVPQKSSVDRSFP-ITVKDVV---LLGRYGKKGWFRRLNKKDKEKVDEALERVGM 129
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ IG +SGG+++RV +A + NP LL+LDEP +G+D + L
Sbjct: 130 EDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L Q GKT++ H V FD+V+ L+ G E ++
Sbjct: 185 LRQEGKTVLMVTHDLGL-VMAYFDRVICLNRHLI-ASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-31
Identities = 67/217 (30%), Positives = 109/217 (50%), Gaps = 18/217 (8%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+L ++ V PGE LAI+GP+G+GKST+L + G L +G+I K
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGKPLEK- 65
Query: 149 ISKRTGFVTQD---DILYPHLTVRET--LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
KR G+V Q D +P ++VR+ + L R LS +K + + + +GL+
Sbjct: 66 ERKRIGYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADK-AKVDEALERVGLS 123
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ + IG +SGG+++RV +A ++ +P LL+LDEP +G+D + L L
Sbjct: 124 ELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
+ G TI+ H V + FD+VL+L + G
Sbjct: 179 RREGMTILVVTHDLGL-VLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 25/208 (12%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNK-----PTKHISKRTG 154
E+ I G SG+GKST+L +AG G L GT+L ++ K P + ++ G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ---RKIG 78
Query: 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSF 214
V Q L+PHL VRE L F + +E + ++ LGL + N +
Sbjct: 79 LVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGLDH-----LLNRY 128
Query: 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR--GKTIVT 272
+SGGE++RV++A + P LL+LDEP S LD +L+ L + + I
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188
Query: 273 SMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
+ H S + D+++V+ +GR Y G
Sbjct: 189 T-HDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 76/228 (33%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG----LTGT 137
+G T +R IL+G+ V GEILAILG SGSGKST+L ++ G L G
Sbjct: 12 RGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGED 71
Query: 138 ILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVM 197
I + + I KR G + Q L+ LTV E + F LR L + +
Sbjct: 72 IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPESLIRELVLMKL 129
Query: 198 AELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257
+GL + + +SGG RKRV++A + ++P LL LDEPTSGLD +A +
Sbjct: 130 ELVGL----RGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID 185
Query: 258 STLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ L G T++ H S + + D+V VL++G+ + G E
Sbjct: 186 ELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 64/211 (30%), Positives = 115/211 (54%), Gaps = 17/211 (8%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH---I 149
L+G++ + PG + +LGP+G+GK+T++ +LA +GTI + K +
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+R G++ Q+ +YP+ TVRE L + + L+ + +KE + + V+ + L
Sbjct: 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK 127
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
IG +SGG R+RV IA ++ +PS+LI+DEPT+GLD R + L L + +
Sbjct: 128 IG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRI 181
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
++ S H V + ++V VL++G+ ++ G
Sbjct: 182 VILSTHIVED-VESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-29
Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 36/245 (14%)
Query: 55 IKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSG 114
I+I N K +F L+ I+ + GE++A+LGPSG
Sbjct: 3 IRINNVKKRFGAFGA------------------------LDDISLDIKSGELVALLGPSG 38
Query: 115 SGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171
+GKST+L ++AG G L G +L + + ++ GFV Q L+PH+TV +
Sbjct: 39 AGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR-DRKVGFVFQHYALFPHMTVADN 97
Query: 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231
+ F L + I V L L + E + + +SGG+R+RV++A
Sbjct: 98 IAFG----LKVRKERPSEAEIRARVEELLRLVQLEGL--ADRYPAQLSGGQRQRVALARA 151
Query: 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLV 290
+ + P +L+LDEP LD+ L L L R G T V H ++ D+V+V
Sbjct: 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE-ALELADRVVV 210
Query: 291 LSEGR 295
L++GR
Sbjct: 211 LNQGR 215
|
Length = 345 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 7e-29
Identities = 77/281 (27%), Positives = 119/281 (42%), Gaps = 44/281 (15%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT----GTILTN---- 141
+L + + GE + +LGPSG GKST+L ++A GL G IL +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA-------GLEEPTSGEILIDGRDV 67
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVM--AE 199
+ P + + V Q+ LYPH+TV E + F L K I + V A+
Sbjct: 68 TDLPPEK--RGIAMVFQNYALYPHMTVYENIAF------GLKLRGVPKAEIDKRVKEVAK 119
Query: 200 -LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR--L 256
LGL + N +SGG+R+RV++A ++ P + +LDEP S LD A R +
Sbjct: 120 LLGLEH-----LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD--AKLRVLM 172
Query: 257 VSTLGSLVQRGKT---IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV- 312
S + L +R T VT H + D+++V+++GR G E ++
Sbjct: 173 RSEIKKLHERLGTTTIYVT--HDQVEA-MTLADRIVVMNDGRIQQVGTPLELYERPANLF 229
Query: 313 --GFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSI 351
GF S PMN + + + V I
Sbjct: 230 VAGFIGSPPMNFLKAEVKADGNGLSIPEDKKVALEQVILGI 270
|
Length = 338 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 9e-29
Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 51/217 (23%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK---- 144
RT+L+ ++ + GEI+ ILGP+G+GKST+L LAG L +G IL +
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASL 66
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
K ++++ +V Q + LGL
Sbjct: 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAH 89
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ + +SGGER+RV +A + P +L+LDEPTS LD L+ L L
Sbjct: 90 -----LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144
Query: 265 -QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
+RGKT+V +H + + D+V++L +GR + G
Sbjct: 145 RERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-28
Identities = 63/220 (28%), Positives = 110/220 (50%), Gaps = 20/220 (9%)
Query: 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN 141
T ++ +L+ I+ V GEI LGP+G+GK+T + ++ G + +G I +
Sbjct: 4 NDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFD 60
Query: 142 NNKPTKHIS--KRTGFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSIAEAVMA 198
K+I +R G + + YP+LT RE L + LL + + + V+
Sbjct: 61 GKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK--------KRIDEVLD 112
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
+GL ++G S G ++R+ IA +L NP LLILDEPT+GLD L
Sbjct: 113 VVGLKD-----SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298
+ SL +G T++ S H S + ++ D++ ++++G+ +
Sbjct: 168 LILSLRDQGITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-28
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 56/211 (26%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN----NK 144
+ + +L ++ + PGE +AI+GPSGSGKST+L +L RL+ +G IL + +
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYDPT--SGEILIDGVDLRDL 69
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ + K +V QD L+ T+RE +
Sbjct: 70 DLESLRKNIAYVPQDPFLF-SGTIRENI-------------------------------- 96
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+SGG+R+R++IA +L +P +LILDE TS LD ++ L +L
Sbjct: 97 -------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL- 142
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+GKT++ H+ S+ + D+++VL +GR
Sbjct: 143 AKGKTVIVIAHRLST--IRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 7e-28
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 10/190 (5%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGH-GLTGTILTNNNKPT 146
+ +L GI V GE++ I+GPSGSGKST+L + G + G LT++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+ ++ G V Q L+PHLTV E + + +S E A ++ ++GL
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA--PIKVKGMSKAEAEERALELLEKVGLADKA 129
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ ++ +SGG+++RV+IA + +NP +++ DEPTS LD ++ + L +
Sbjct: 130 D-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184
Query: 267 GKTIVTSMHQ 276
G T+V H+
Sbjct: 185 GMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-27
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS- 150
T ++ I+ + GE + +LGPSG GK+T+L ++AG G IL + + +
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILL-DGEDITDVPP 74
Query: 151 -KR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
KR G V Q L+PH+TV E + F L++ + L E + E + +GL
Sbjct: 75 EKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEG---- 128
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-G 267
+ +SGG+++RV++A ++ P +L+LDEP S LD+ ++ L L + G
Sbjct: 129 -FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELG 187
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
T V H M D++ V+++GR
Sbjct: 188 ITFVYVTHDQEE-ALAMSDRIAVMNDGR 214
|
Length = 352 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 4e-27
Identities = 67/219 (30%), Positives = 108/219 (49%), Gaps = 15/219 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGT-ILTNNNKP 145
L+ ++ + GE L ++G SGSGKST+ + G L G G +L + +
Sbjct: 17 SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76
Query: 146 TKHISKRTGFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA-VMAELGL 202
K K V QD + L P +T+ E + LR+ LS KE A ++ +GL
Sbjct: 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQI--AEPLRIHGKLSKKEARKEAVLLLLVGVGL 134
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ + N + +SGG+R+RV+IA + +NP LLI DEPTS LD + +++ L
Sbjct: 135 PE----EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
Query: 263 L-VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
L + G T++ H V ++ D+V V+ G+ + G
Sbjct: 191 LQEELGLTLLFITHDLGV-VAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 16/222 (7%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+ IL ++ V+PGE AI+GP+G+GK+T+L++L G G T+L +
Sbjct: 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG-DVTLLGRRFGKGET 100
Query: 149 IS---KRTGFVT--QDDILYPHLTVRETLV--FCSLLRLPRTLSTKEKTSIAEAVMAELG 201
I KR G V+ + TVR+ ++ F + + + + T E + A+ ++ LG
Sbjct: 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLG 160
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
+ + +S GE++RV IA ++ +P LLILDEP GLD A +L++ L
Sbjct: 161 AKH-----LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE 215
Query: 262 SLVQR--GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
L ++ H + F L+L EG + GK
Sbjct: 216 ELAASPGAPALLFVTHHAEE-IPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-27
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 21/210 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L+GI +S GE + ++GPSG+GKST+L ++ +GTI N + + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNG-QDVSDLRGRA 72
Query: 154 --------GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
G V QD L P V E + F ++ I + V A L L
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAF------ALEVTGVPPREIRKRVPAALELVGL 126
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+ + +SGGE++RV+IA ++ +P++LI DEPT LD + +++ L + +
Sbjct: 127 SHKH--RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK 184
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
G T+V + H V +V+ L G+
Sbjct: 185 AGTTVVVATHA-KELVDTTRHRVIALERGK 213
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-27
Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 37/234 (15%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--------QGHGLTGTILTNNNKP 145
L+ ++ V PGEI ++GP+G+GK+T+ N+++G L G +TG P
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL------PP 69
Query: 146 TKHISKRTGFV-T-QDDILYPHLTVRETLVFCSLLRLPRTLST-------KEKTSIAEAV 196
H R G T Q L+P LTV E ++ + R L +E AE +
Sbjct: 70 --HEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEEL 127
Query: 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+ +GL + G +S G+++R+ IA + +P LL+LDEP +GL+ L
Sbjct: 128 LERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEEL 182
Query: 257 VSTLGSLVQRGKTIVT---SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ L +RG T++ M V + D+V VL +GR + G E +
Sbjct: 183 AELIRELRERGITVLLVEHDMD----VVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 65/218 (29%), Positives = 103/218 (47%), Gaps = 21/218 (9%)
Query: 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN 141
+ + K ++ IL+ + + G++ AI+G SGSGKST+LN++ G L + G + N
Sbjct: 2 KNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEKFDS--GQVYLN 58
Query: 142 --NNKPTKHISKRT------GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA 193
P G++ Q+ L + TV E L L + LS KEK
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL---DLGLKYKKLSKKEKREKK 115
Query: 194 EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253
+ + ++GL I +SGGE++RV++A +L P L++ DEPT LD
Sbjct: 116 KEALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNR 170
Query: 254 YRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291
++ L L GKTI+ H P V + D+V+ L
Sbjct: 171 DEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 68/214 (31%), Positives = 116/214 (54%), Gaps = 22/214 (10%)
Query: 77 SSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ---GHG 133
S+ + + K +T+L+GI V PGE++AI+GPSGSGK+T+L + L Q G
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCI-NLLEQPEAGTI 60
Query: 134 LTGTILTNNNKP-------TKHISKRTGFVTQDDILYPHLTVRETLVFCSLL--RLPRTL 184
G I + + + + + GFV Q+ L+PH TV E ++ ++ P+
Sbjct: 61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK-- 118
Query: 185 STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244
+E T+ A ++A++GL E S+ R +SGG+++RV+IA + + P +++ DEP
Sbjct: 119 --EEATARARELLAKVGLAGKET-----SYPRRLSGGQQQRVAIARALAMRPEVILFDEP 171
Query: 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278
TS LD +++T+ L Q +T+V H+ S
Sbjct: 172 TSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 32/219 (14%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPT--- 146
+L GI+ V GE++ I+GPSGSGKST+L L G L G+I +
Sbjct: 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDS----GSITVDGEDVGDKK 70
Query: 147 --KHISKRTGFVTQDDILYPHLTVRE--TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ ++ G V Q L+PHLTV E TL + +L + E A ++ ++GL
Sbjct: 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSK----AEAREKALELLEKVGL 126
Query: 203 T-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
K +++ +SGG+++RV+IA + ++P +++ DEPTS LD ++ +
Sbjct: 127 ADKA------DAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180
Query: 262 SLVQRGKTIVTSMH------QPSSRVYQMFDKVLVLSEG 294
L + G T++ H + + RV M D+ ++ EG
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFM-DQGKIIEEG 218
|
Length = 240 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK 144
+ ++ +L + ++ GEI+ ++GPSG GKST+L+ + G L TG + N +
Sbjct: 9 SLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR 68
Query: 145 ----PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
P ++ G + QD +L+PHL+V + L+F LP TL + + A A +
Sbjct: 69 LDMLPAAQ--RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERS 122
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
GL + +SGG+R RV++ +L P L+LDEP S LD
Sbjct: 123 GLDG-----AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 4e-26
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 53/209 (25%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPT 146
E +L ++ + PGE LAI+GPSGSGKST+ ++ G L G L G ++ +
Sbjct: 14 EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP-- 71
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+ G++ QDD L+ SIAE ++
Sbjct: 72 NELGDHVGYLPQDDELFS-------------------------GSIAENIL--------- 97
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
SGG+R+R+ +A + NP +L+LDEP S LD L + +L
Sbjct: 98 ------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA 145
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
G T + H+P D++LVL +GR
Sbjct: 146 GATRIVIAHRPE--TLASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 6e-26
Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 20/226 (8%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-TNNNKPTKH- 148
+ L ++ ++PGE +A++GPSG+GKST+L L G L + + I T+ NK
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG-LVEPTSGSVLIDGTDINKLKGKA 72
Query: 149 ---ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP--RTLS---TKEKTSIAEAVMAEL 200
+ ++ G + Q L L+V E ++ L R R+L KE+ A A + +
Sbjct: 73 LRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV 132
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL +SGG+++RV+IA ++ P L++ DEP + LD ++ +++ L
Sbjct: 133 GLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187
Query: 261 GSL-VQRGKTIVTSMHQPS-SRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ + G T++ S+HQ +R Y D+++ L +GR ++ G +E
Sbjct: 188 KRINREEGITVIVSLHQVDLAREY--ADRIVGLKDGRIVFDGPPAE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 6e-26
Identities = 77/230 (33%), Positives = 115/230 (50%), Gaps = 21/230 (9%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNK 144
++ L GI+ + GE LAI+GPSGSGKST+ ++ G G L G L ++
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE----- 199
T K G++ QD L+P TV E + R EK I A +A
Sbjct: 388 ET--FGKHIGYLPQDVELFPG-TVAENIA-----RFGENA-DPEKI-IEAAKLAGVHELI 437
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
L L +T+IG +SGG+R+R+++A + +P L++LDEP S LD L +
Sbjct: 438 LRLPDGYDTVIGPGGA-TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYF 309
+ +L RG T+V H+PS + DK+LVL +GR FG+ E ++
Sbjct: 497 IKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-26
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 17/223 (7%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
+ +R ++NG++ V GEI+ +LGP+G+GK+T ++ G + G IL + T
Sbjct: 9 RYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG---KILLDGQDIT 65
Query: 147 K-HISKRT----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
K + KR G++ Q+ ++ LTV E ++ ++L + R LS KE+ E ++ E
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENIL--AVLEI-RGLSKKEREEKLEELLEEFH 122
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
+T S +SGGER+RV IA + NP L+LDEP +G+D A + +
Sbjct: 123 ITHLRK-----SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177
Query: 262 SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
L RG ++ + H + D+ ++ EG+ L G E
Sbjct: 178 ILKDRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEE 219
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 15/216 (6%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HIS 150
L+ + V G ++A+LGPSGSGKST+L ++AG +G I N T+ H
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 151 KR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
R GFV Q L+ HLTVR+ + F +R K + E ++ + L
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARV---EELLELVQLEG----- 122
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK- 268
+G+ + +SGG+R+RV++A + + P +L+LDEP LD+ L S L L
Sbjct: 123 LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
T V H ++ D+++V+S G+ G E
Sbjct: 183 TTVFVTHD-QEEAMEVADRIVVMSNGKIEQIGSPDE 217
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 11/214 (5%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKR 152
L+ ++ + GE++A+LGPSGSGK+T+L ++AG L + +GTIL T + +R
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERPD--SGTILFGGEDATDVPVQER 74
Query: 153 -TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG 211
GFV Q L+ H+TV + + F LR+ + I V L L + + +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQLDW--LA 130
Query: 212 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTI 270
+ + +SGG+R+RV++A + + P +L+LDEP LD+ L L L T
Sbjct: 131 DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTT 190
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
V H ++ D+V+V+++GR G E
Sbjct: 191 VFVTHD-QEEALEVADRVVVMNKGRIEQVGTPDE 223
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 63/207 (30%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+ R+ L ++ ++ GE++ +LGPSG GK+T+LN++AG + G + N + +
Sbjct: 16 KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG----SIQLNGRRIEG 71
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
G V Q++ L P L V + + F L+L R + ++ IA ++A +GL E
Sbjct: 72 PGAERGVVFQNEALLPWLNVIDNVAFG--LQL-RGIEKAQRREIAHQMLALVGLEGAE-- 126
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-G 267
+ +I +SGG R+RV IA + + P LL+LDEP LD+ ++ L L Q G
Sbjct: 127 ---HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG 183
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEG 294
K ++ H ++ + +++VLS G
Sbjct: 184 KQVLLITHDIEEALF-LATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-25
Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 16/215 (7%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150
T+L+ ++ + GE+LA++G SG GK+T+L +AG + + GLTG I + T H
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLT-HAP 75
Query: 151 --KRT-GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
KR + Q+ L+PHL V + + F LR + K IAE V L L +
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFG--LRAQK----MPKADIAERVADALKLVGLGD 129
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR- 266
+SGG ++R++IA + I P +L+LDEP S LD+ + + +L +
Sbjct: 130 A--AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 267 -GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
TI+ H + DK ++ +GR G
Sbjct: 188 PELTILCVTHD-QDDALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 21/237 (8%)
Query: 74 GSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG 133
S + D + + ++ +++G++ V GE +LGP+G+GK+T L +L G H
Sbjct: 3 MSVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-- 60
Query: 134 LTGTI-LTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEK 189
G+I L P++ H +R G V Q D L P TVRE L VF L
Sbjct: 61 -AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS-------A 112
Query: 190 TSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ V L K EN ++ + +SGG ++R+++A ++ +P +L+LDEPT+GLD
Sbjct: 113 AAARALVPPLLEFAKLENK--ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
Query: 250 STAAYRLVSTLGSLVQRGKTIVTSMH--QPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
A + + L SL+ RGKTI+ + H + + R + D++ V+ EGR + G
Sbjct: 171 PQARHLMWERLRSLLARGKTILLTTHFMEEAER---LCDRLCVIEEGRKIAEGAPHA 224
|
Length = 306 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 8e-25
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 32/233 (13%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150
L + ++ GE++AI+GPSG+GKST+L L G + +G IL N + TK
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKG 73
Query: 151 K-------RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLS-----TKEKTSIAEAVMA 198
K G + Q L P L+V E ++ L S +KE + A +
Sbjct: 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALE 133
Query: 199 ELGL-----TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253
+G+ + +SGG+++RV+IA ++ P +++ DEP + LD +A
Sbjct: 134 RVGILDKAYQRAST----------LSGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183
Query: 254 YRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305
+++ L + Q G T++ ++HQ + D+++ L GR ++ G SE
Sbjct: 184 KKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-25
Identities = 66/230 (28%), Positives = 100/230 (43%), Gaps = 33/230 (14%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISK 151
LN ++ + GE L I+G SGSGKST+ +LAG +G+IL +
Sbjct: 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRA 77
Query: 152 RTGF-----VTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ + V QD L P TV L R + ++ ++GL
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGR-----ILSEPLRPHGLSKSQQRIAELLDQVGL-- 130
Query: 205 CENTIIGNSFIR----GISGGERKRVSIAHEMLINPSLLILDEPTSGLDS---TAAYRLV 257
SF+ +SGG+R+R++IA ++ P LLILDEPTS LD L+
Sbjct: 131 ------PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184
Query: 258 STLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L +RG T + H + V M D++ V+ G+ + G E +S
Sbjct: 185 LELKK--ERGLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-25
Identities = 70/243 (28%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 85 TAKIQERT-ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTN- 141
+++ + IL G+ V GE+ AI+GP+GSGKST+ + G H + +T G IL +
Sbjct: 10 HVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDG 67
Query: 142 ---NNKPTKHISKRTGFVT-QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVM 197
++ F+ Q + P +T + L R E +
Sbjct: 68 EDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKA 127
Query: 198 AELGLTKCENTIIGNSFIR-----GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
LGL + F+ G SGGE+KR I +L+ P L ILDEP SGLD
Sbjct: 128 ELLGLDE--------EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID- 178
Query: 253 AYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311
A ++V+ + +L + G+ ++ H Y DKV VL +GR + G E E
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG-DPELAEELEE 237
Query: 312 VGF 314
G+
Sbjct: 238 KGY 240
|
Length = 251 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 18/221 (8%)
Query: 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN 141
+ + + ++T +N I+ V + +LGP+G+GKST+L ++ G L +G I+ +
Sbjct: 4 KNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFD 60
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ T+ + G + + LY +LT RE L V +LL LP S + V+ +
Sbjct: 61 GHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLP--------DSRIDEVLNIV 112
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
LT G + S G ++R+ IA +L +P LLILDEPT+GLD L +
Sbjct: 113 DLTN-----TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
S ++G T++ S H S V Q+ D + ++SEG Y GK
Sbjct: 168 RSFPEQGITVILSSH-ILSEVQQLADHIGIISEGVLGYQGK 207
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-24
Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 24/227 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
++ +L I+ + PGE +AI+GPSGSGKST++ +L RL+ +G IL + + I
Sbjct: 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPT--SGEIL-IDGIDIRDI 396
Query: 150 S-----KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEK-TSIAEAVMAE---L 200
S KR G V+QD +L+ T+RE + L R +T E+ + A
Sbjct: 397 SLDSLRKRIGIVSQDPLLF-SGTIRE------NIALGRPDATDEEIEEALKLANAHEFIA 449
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
L +TI+G + +SGG+R+R++IA +L NP +LILDE TS LD+ + L
Sbjct: 450 NLPDGYDTIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL 508
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L++ T++ + H+ S+ + D+++VL GR + G E ++
Sbjct: 509 KKLLKGRTTLIIA-HRLST--IKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNKPT 146
R L ++ + GE + + GPSG+GKST+L ++ G G IL N +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKG 71
Query: 147 KHIS---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ I ++ G V QD L P TV E + P + K I V L L
Sbjct: 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLV 125
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
++ + +SGGE++RV+IA ++ P++L+ DEPT LD ++ ++ +
Sbjct: 126 GLKHKA--RALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ G T++ + H V +M +VL L +GR
Sbjct: 184 NRLGTTVLMATHD-LELVNRMRHRVLALEDGR 214
|
Length = 223 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 70/232 (30%), Positives = 107/232 (46%), Gaps = 29/232 (12%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVT 157
V G+ ILGP+GSGKS +L +AG + G L G +TN P K +V
Sbjct: 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP-PEKR---DISYVP 77
Query: 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV--MAE-LGLTKCENTIIGNSF 214
Q+ L+PH+TV + + + R +K I V +AE LG+ + N
Sbjct: 78 QNYALFPHMTVYKNIAYGLKKRK------VDKKEIERKVLEIAEMLGIDH-----LLNRK 126
Query: 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE++RV+IA +++NP +L+LDEP S LD +L L + + V +
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186
Query: 275 HQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFL 326
+ + DKV ++ G+ + GK E V P A+FL
Sbjct: 187 THDFEEAWALADKVAIMLNGKLIQVGK-------PEEVFKKPK-NEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-24
Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 25/225 (11%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS- 150
L+ + + G++ A++G SG+GKST+LN+L G L G I N + +S
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGI-DLRDLSP 390
Query: 151 ----KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLST----KEKTSIAEAVMAELGL 202
K+ +V+Q+ L+ T+RE ++ L R + ++ + E V GL
Sbjct: 391 EAWRKQISWVSQNPYLFAG-TIRENIL---LARPDASDEEIIAALDQAGLLEFVPKPDGL 446
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+T+IG G+SGG+ +R+++A +L SLL+LDEPT+ LD+ ++ L
Sbjct: 447 ----DTVIGEGG-AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L ++ +V + H+ D+++VL GR + G E
Sbjct: 502 LAKQKTVLVIT-HRLEDAA-DA-DRIVVLDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-24
Identities = 67/197 (34%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG----LTGTILTNNNK 144
E +IL G+ +V GE +AI+GPSGSGKST+L VLAG L L G L ++
Sbjct: 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG-LDDPSSGEVRLLGQPLHKLDE 79
Query: 145 PTKHI--SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ ++ GFV Q L P+LT E + L R S+ + + A+A++ +GL
Sbjct: 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLEL---RGESSADSRAGAKALLEAVGL 136
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
K +SGGE++RV++A P +L DEPT LD ++ L +
Sbjct: 137 GKRLTHYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191
Query: 263 LV-QRGKTIVTSMHQPS 278
L +RG T+V H P
Sbjct: 192 LNRERGTTLVLVTHDPQ 208
|
Length = 228 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-24
Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 25/226 (11%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKP 145
Q++ IL GI+ + GE L I+GPSGSGKST+ +L G G L G L ++
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 146 T--KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---- 199
+HI G++ QD L+ T+ E + R EK I A +A
Sbjct: 407 QLGRHI----GYLPQDVELFDG-TIAENIA-----RFGEEADP-EKV-IEAARLAGVHEL 454
Query: 200 -LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
L L + +T IG +SGG+R+R+++A + +P L++LDEP S LDS L +
Sbjct: 455 ILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA 513
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ + RG T+V H+PS DK+LVL +GR FG E
Sbjct: 514 AILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-24
Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 13/209 (6%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTKHISK 151
++G++ V PGE+ +LGP+G+GK+T L +LAG L G +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP--AEARR 78
Query: 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG 211
R GFV+ LY LT RE L + + L L E T+ E + LG+ + + +G
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG 135
Query: 212 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
G S G R++V+IA ++ +P +L+LDEPT+GLD A L + L GK I+
Sbjct: 136 -----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 272 TSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
S H V ++ D+V+VL GR +Y G
Sbjct: 191 FSTHI-MQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-24
Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 19/218 (8%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTNNNKPTKHI- 149
L+G++ + GE +LGPSG GK+T+L ++AG T G IL + K ++
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF----ETPTSGEILL-DGKDITNLP 68
Query: 150 -SKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
KR V Q+ L+PHLTV E + F L K I E V L L + E
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAF------GLRLKKLPKAEIKERVAEALDLVQLEG 122
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR- 266
N +SGG+++RV+IA ++ P +L+LDEP LD + L L +
Sbjct: 123 --YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
G T V H M D++ V+++G+ G E
Sbjct: 181 GITFVFVTHD-QEEALTMSDRIAVMNKGKIQQIGTPEE 217
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 69/235 (29%), Positives = 110/235 (46%), Gaps = 32/235 (13%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKH 148
T +N ++ V PGEI+ ++GP+G+GK+T+ N++ G G G +T P
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHR 75
Query: 149 ISK----RTGFVTQDDILYPHLTVRE--------TLVFCSLLRLPRTLSTKEKTSIAEAV 196
I++ RT +T+ L+P LTV E L LL PR + KE+ E
Sbjct: 76 IARLGIARTFQITR---LFPGLTVLENVAVGAHARLGLSGLLGRPR--ARKEEREARERA 130
Query: 197 MA---ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253
+GL + + GN +S G+++R+ IA + P LL+LDEP +GL+
Sbjct: 131 RELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEET 185
Query: 254 YRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L + L R G TI+ H V + D+++VL+ G + G E +
Sbjct: 186 EELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 1e-23
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL--TGTIL------TN 141
++ L I+ + GEI A++GPSG GKST+L +L G G +L +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ + +R G V Q +P ++ + + + LRL +E E + +
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYG--LRLHGIKLKEELDERVEEALRKAA 128
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L G+SGG+++R+ +A + P +L+LDEPTS LD + ++ +
Sbjct: 129 LWDEVKD---RLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA 185
Query: 262 SLVQRGKTIVTS--MHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
L + ++ + M Q ++ D+ L GR + FG
Sbjct: 186 ELKKEYTIVIVTHNMQQ----AARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 68/219 (31%), Positives = 108/219 (49%), Gaps = 30/219 (13%)
Query: 102 SPG-EILAILGPSGSGKSTMLNVLAG--RLHQGH-GLTGTILTNNNK-----PTKHISKR 152
PG + AI G SGSGK+T++ ++AG R +G L G L ++ K P K +R
Sbjct: 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK---RR 76
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA-EAVMAELGLTKCENTIIG 211
G+V Q+ L+PHL+VR L + + + I+ E V+ LG IG
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRY------GMKRARPSERRISFERVIELLG--------IG 122
Query: 212 NSFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+ R +SGGE++RV+I +L +P LL++DEP + LD Y ++ L L
Sbjct: 123 HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG 182
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ + V ++ D+V+VL +GR G +E +
Sbjct: 183 IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 64/218 (29%), Positives = 105/218 (48%), Gaps = 19/218 (8%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNN------ 143
++G++ + GEIL I+G SGSGKS + + G L + + + G IL +
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 144 --KPTKHISKRTGFVTQD--DILYPHLTVRETLVFCSLLRLPRTLSTK-EKTSIAEAVMA 198
+ K K + QD L P +T+ + + +LRL +K E A ++
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA--EVLRLHGKGLSKKEAKERAIELLE 136
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
+G+ E S+ +SGG R+RV IA + +NP LLI DEPT+ LD T +++
Sbjct: 137 LVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD 194
Query: 259 TLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L L + +G ++ H V ++ D+V V+ GR
Sbjct: 195 LLKELQREKGTALILITHDLGV-VAEIADRVAVMYAGR 231
|
Length = 316 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 3e-23
Identities = 60/189 (31%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHI 149
+L G+ GE+LA+LG +G+GKST+L L G L G + G L + K
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 150 SKRTGFVTQ---DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+R G V Q D + V + + F L L LS E + +G +
Sbjct: 67 RQRVGLVFQDPDDQLFAA--DVDQDVAF-GPLNL--GLSEAEVERRVREALTAVGASGLR 121
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+SGGE+KRV+IA + + P +L+LDEPT+GLD ++++ L L
Sbjct: 122 ERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 267 GKTIVTSMH 275
G T+V S H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 3e-23
Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 12/211 (5%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
T L+ I+ V GEI +LGP+G+GK+T + ++ G + +G +L +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAA 68
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
R G++ ++ LYP + V + LV+ L +L + L +E + + L L++ N
Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLVY--LAQL-KGLKKEEARRRIDEWLERLELSEYAN-- 123
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+ +S G +++V ++ +P LLILDEP SGLD L + L + GKT
Sbjct: 124 ---KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
++ S HQ V ++ D+VL+L++GR + +G
Sbjct: 181 VILSTHQMEL-VEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-23
Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 12/219 (5%)
Query: 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN 142
G T ++ ++ I+ V PGEI +LGP+G+GK+T ++ G L G I N
Sbjct: 7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNG 63
Query: 143 NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
++ I R G++ ++ LYP +TV + L + L L + + E +A + L +
Sbjct: 64 GPLSQEIKNRIGYLPEERGLYPKMTVEDQLKY--LAEL-KGMPKAEIQKKLQAWLERLEI 120
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ I+ +S G ++++ ++ P LLILDEP SGLD L +
Sbjct: 121 VGKK-----TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
L + G TI+ S H+ V ++ D++L+L +G+ + +G
Sbjct: 176 LKEEGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-23
Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 15/209 (7%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHIS 150
++ ++ + GE L ++G SGSGKST+ +LAG L G G L + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 151 KRT--GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+R F L P +TV + L LR+ S E+ + ++ +GL
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDIL--AEPLRIHGGGSGAERRARVAELLELVGL----PP 420
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD-STAAYRLVSTLGSLVQR- 266
+ + +SGG+R+RV+IA + + P LLILDEP S LD S A ++++ L L +
Sbjct: 421 EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQA-QVLNLLKDLQEEL 479
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
G T + H + V + D+V V+ +GR
Sbjct: 480 GLTYLFISH-DLAVVRYIADRVAVMYDGR 507
|
Length = 539 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-23
Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 32/220 (14%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPT 146
Q+ L ++ GE +AILG SGSGKST+L +LAG QG +T N
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGS------ITLNGVEI 402
Query: 147 KHIS-----KRTGFVTQDDILYPHL---TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA 198
+ + +TQ HL T+R+ L + S +E + + V
Sbjct: 403 ASLDEQALRETISVLTQR----VHLFSGTLRDNLRLANP-----DASDEELWAALQQVGL 453
Query: 199 E---LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
E NT +G R +SGGER+R+++A +L + L +LDEPT GLD +
Sbjct: 454 EKLLESAPDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQ 512
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+++ L GKT++ H+ R + D+++VL G+
Sbjct: 513 VLALL-FEHAEGKTLLMVTHR--LRGLERMDRIIVLDNGK 549
|
Length = 573 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 6e-23
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 11/202 (5%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY 163
GEI +LG +G+GK+T+L ++A L G + + + ++ G + + LY
Sbjct: 28 GEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY 87
Query: 164 PHLTVRETLVFCSLLRLPRTLSTKE-KTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE 222
LT RE L + + L LS KE K IAE + L L + + +G S G
Sbjct: 88 ARLTARENLKYFARLN---GLSRKEIKARIAE-LSKRLQLLEYLDRRVG-----EFSTGM 138
Query: 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVY 282
+++V+IA ++ +PS+L+LDEPTSGLD + + L G+ ++ S H V
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI-MQEVE 197
Query: 283 QMFDKVLVLSEGRCLYFGKGSE 304
+ D+V+VL +G + G
Sbjct: 198 ALCDRVIVLHKGEVVLEGSIEA 219
|
Length = 245 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 9e-23
Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 14/210 (6%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGH-GLTGTILTNNNKPTK 147
R I++G+ PG + +LGP+GSGKST+L +LAG L G L G L +
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHG--LSRR 71
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCE 206
++R V QD LTVR+ + L R+P R+L + A V L T E
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVA---LGRIPHRSLWAGDSPHDAAVVDRALART--E 126
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ + + + +SGGER+RV +A + P LL+LDEPT+ LD A ++ + L
Sbjct: 127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186
Query: 267 GKTIVTSMHQPSSRVYQMF-DKVLVLSEGR 295
G T+V ++H + + + D V+VL GR
Sbjct: 187 GVTVVAALHDLN--LAASYCDHVVVLDGGR 214
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 18/216 (8%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTNNN------- 143
+ ++ V PGEIL I+G SGSGKST+ L G L +G +T G ++ +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 144 KPTKHI-SKRTGFVTQD--DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ + + KR + QD L P +T+ + LRL S E A ++ ++
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGD--QIREALRLHGKGSRAEARKRAVELLEQV 140
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL + + + +SGG R+RV IA + + P LLI DEPT+ LD T +++ L
Sbjct: 141 GL---PDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLL 197
Query: 261 GSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L + G ++ H V ++ D+V+V+ +G
Sbjct: 198 KDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGE 232
|
Length = 539 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 1e-22
Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 17/231 (7%)
Query: 75 STSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL 134
ST + D G + ++ ++NG++ V+ GE +LGP+G+GKST+ ++ G G
Sbjct: 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGK 97
Query: 135 TGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSIA 193
+ + R G V Q D L TVRE L VF + ST+E
Sbjct: 98 ITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM----STRE----I 149
Query: 194 EAVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
EAV+ L + E+ ++ + +SGG ++R+++A ++ +P LLILDEPT+GLD A
Sbjct: 150 EAVIPSLLEFARLESK--ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207
Query: 253 AYRLVSTLGSLVQRGKTIVTSMH--QPSSRVYQMFDKVLVLSEGRCLYFGK 301
+ + L SL+ RGKTI+ + H + + R + D++ VL GR + G+
Sbjct: 208 RHLIWERLRSLLARGKTILLTTHFMEEAER---LCDRLCVLEAGRKIAEGR 255
|
Length = 340 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-22
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 69/216 (31%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTN 141
+ + RT L+ ++ + GEI+A++GP+GSGKST+L +AG L G + G +
Sbjct: 6 SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA- 64
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLST--KEKTSIAEAVMAE 199
P + + +R G+V Q LS +++ ++A A
Sbjct: 65 -KLPLEELRRRIGYVPQ-------------------------LSGGQRQRVALARA---- 94
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
+L+NP LL+LDEPTSGLD + RL+
Sbjct: 95 --------------------------------LLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L L + G+T++ H P D+V+VL +G+
Sbjct: 123 LRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 1e-22
Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 25/215 (11%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGF--VTQ 158
V GEI+AILGPSG+GKST+LN++AG +G IL N T + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 159 DDILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217
++ L+ HLTV + + L P L+ +++ + EA A++GL + G
Sbjct: 79 ENNLFAHLTVAQNI---GLGLSPGLKLNAEQREKV-EAAAAQVGLAGFLKRLPGE----- 129
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR-----LVSTLGSLVQRGKTIVT 272
+SGG+R+RV++A ++ +L+LDEP S LD A R LVS L +R T++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALRAEMLALVSQLCD--ERKMTLLM 185
Query: 273 SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
H P ++ D+V+ L GR G E +S
Sbjct: 186 VTHHPED-AARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 24/235 (10%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTN 141
+ + R +L+G++ + PGE+LAILGP+G+GKST+L L+G L G L G L
Sbjct: 8 SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL-- 65
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLS--TKEKTSIAEAVMAE 199
N+ P + +++ + Q+ L TV+E + + R+P +E IA +A
Sbjct: 66 NSWPPEELARHRAVLPQNSSLAFPFTVQEVV---QMGRIPHRSGREPEEDERIAAQALAA 122
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIA------HEMLINPSLLILDEPTSGLDSTAA 253
L+ R +SGGE++RV +A + + L LDEPTS LD
Sbjct: 123 TDLSGLA-----GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177
Query: 254 YRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF-DKVLVLSEGRCLYFGKGSEAMS 307
+ + L + G ++ +H + + + D++++L +GR + G + ++
Sbjct: 178 HHTLRLARQLAREGGAVLAVLHDLN--LAAQYADRIVLLHQGRVIASGSPQDVLT 230
|
Length = 259 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 55/218 (25%), Positives = 103/218 (47%), Gaps = 19/218 (8%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
+ ++ + + GE L ++GPSGSGK+T L ++ + +G IL + + +
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILI-DGEDISDL 68
Query: 150 S-----KRTGFVTQDDILYPHLTVRETLVFC-SLLRLPRTLSTKEKTSIAEAVMAELGLT 203
++ G+V Q L+PHLTV E + LL + + A+ ++ +GL
Sbjct: 69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK----ERIKKRADELLDLVGLD 124
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
E + + +SGG+++RV +A + +P +L++DEP LD +L + L
Sbjct: 125 PSE---YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181
Query: 264 VQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
+ GKTIV H + + D++ V+ G + +
Sbjct: 182 QKELGKTIVFVTHDIDEALK-LADRIAVMDAGEIVQYD 218
|
Length = 309 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 2e-22
Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 26/216 (12%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN--KPTK 147
++ +L I + PGE +AI+GP+G+GK+T++N+L R + G IL + +
Sbjct: 15 KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQK--GQILIDGIDIRDIS 71
Query: 148 HISKRT--GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA--EAVMAELG-- 201
S R+ G V QD L+ T+ E + RL R +T E+ A EA +
Sbjct: 72 RKSLRSMIGVVLQDTFLFSG-TIMENI------RLGRPNATDEEVIEAAKEAGAHDFIMK 124
Query: 202 LTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
L +T++G G +S GER+ ++IA ML +P +LILDE TS +D+ +
Sbjct: 125 LPNGYDTVLGE---NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEA 181
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L L +G+T + H+ S+ DK+LVL +G+
Sbjct: 182 LEKL-MKGRTSIIIAHRLSTIKNA--DKILVLDDGK 214
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 3e-22
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG-RLHQGHGLT--GTILTNNNKPT 146
+ +L I ++PGEI+ + GPSGSGK+T+L ++ G R Q L G L ++
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKE 76
Query: 147 K-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ + G++ Q L LT R+ + L L LS +E A A++ +GL
Sbjct: 77 LVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGL--- 131
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV- 264
+ + + + +SGG+++RV+IA ++ P L++ DEPT+ LDS + +V + L
Sbjct: 132 GDHL--DYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
++G TI+ H R+ + D+++ + +G+
Sbjct: 190 EQGCTILIVTHDN--RILDVADRIVHMEDGK 218
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 3e-22
Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 41/241 (17%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
++ RT+L+ ++ + PGE++AILGP+G+GKST+L L+G L G + N +P
Sbjct: 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG---EV-RLNGRPL 66
Query: 147 KHIS-----KRTGFVTQDDILYPHL----TVRETLVFCSLLRLPRTLSTKEKTSIAEAVM 197
S +R + Q + L TV E + ++ R P LS E ++ A +
Sbjct: 67 ADWSPAELARRRAVLPQ----HSSLSFPFTVEEVV---AMGRAPHGLSRAEDDALVAAAL 119
Query: 198 AELGLTKCENTIIGNSFIRGISGGERKRVSIA------HEMLINPSLLILDEPTSGLDST 251
A++ L + +SGGE++RV +A E P L+LDEPTS LD
Sbjct: 120 AQVDLAH-----LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA 174
Query: 252 AAYRLVSTLGSLV-QRGKTIVTSMH---QPSSRVYQMF-DKVLVLSEGRCLYFGKGSEAM 306
+ ++ L +RG ++ +H + + D++++L +GR + G +E +
Sbjct: 175 HQHHVLRLARQLAHERGLAVIVVLHDLNLAA-----RYADRIVLLHQGRLVADGTPAEVL 229
Query: 307 S 307
+
Sbjct: 230 T 230
|
Length = 258 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 34/221 (15%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK---- 144
QE L+ ++ + GE +AI+G GSGKST+L +LAG L++ G++L +
Sbjct: 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG-LYKPTS--GSVLLDGTDIRQL 71
Query: 145 PTKHISKRTGFVTQDDILYPHL---TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ + G+V QD L T+R+ + L L+ E+ I A G
Sbjct: 72 DPADLRRNIGYVPQD----VTLFYGTLRDNIT------LGAPLADDER--ILRAAEL-AG 118
Query: 202 LTKCEN-------TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
+T N IG RG+SGG+R+ V++A +L +P +L+LDEPTS +D +
Sbjct: 119 VTDFVNKHPNGLDLQIGERG-RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
RL L L+ KT++ H+PS + + D+++V+ GR
Sbjct: 178 RLKERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSGR 215
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 4e-22
Identities = 67/235 (28%), Positives = 97/235 (41%), Gaps = 46/235 (19%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTNNN 143
+ + IL G+ + GE+ A++GP+GSGKST+ + G H + +T G IL
Sbjct: 7 HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKG- 63
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+DI L E RL L+ + I A+
Sbjct: 64 ---------------EDIT--DLPPEERA------RLGIFLAFQYPPEIPGVKNAD---- 96
Query: 204 KCENTIIGNSFIR----GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
F+R G SGGE+KR I +L+ P L ILDEP SGLD A +
Sbjct: 97 ----------FLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEV 146
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314
+ L + GK+++ H Y D+V VL +GR + G E E G+
Sbjct: 147 INKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELALEIEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 4e-22
Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 27/230 (11%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHIS 150
L GI GE++A+LGP+G+GKST+ G L G + G + + K +
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77
Query: 151 KRTGFVTQ---DDILYPHLTVRETLVFCSL-LRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
K G V Q D + P TV E + F L L L + + + + EA + +G+ E
Sbjct: 78 KTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE---EVEKRVKEA-LKAVGMEGFE 131
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
N + +SGG++KRV+IA + + P +++LDEPTSGLD A +++ L L +
Sbjct: 132 NKPPHH-----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186
Query: 267 GKTIVTSMHQ----PSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
G TI+ S H P VY DKV V+S+G+ + G E S E++
Sbjct: 187 GITIIISTHDVDLVP---VYA--DKVYVMSDGKIIKEGTPKEVFSDIETI 231
|
Length = 275 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 4e-22
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 25/205 (12%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-PTKHI 149
IL+ ++ + GEI+A+ G +G+GK+T+ +LAG + + G +IL N K
Sbjct: 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG---SILLNGKPIKAKER 69
Query: 150 SKRTGFVTQD--DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
K G+V QD L+ +VRE L LL L AE V+ +L L +
Sbjct: 70 RKSIGYVMQDVDYQLFTD-SVREEL----LLGLKEL---DAGNEQAETVLKDLDLYALKE 121
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
+SGG+++R++IA +L LLI DEPTSGLD R+ + L +G
Sbjct: 122 -----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG 176
Query: 268 KTIVTSMHQP------SSRVYQMFD 286
K ++ H RV + +
Sbjct: 177 KAVIVITHDYEFLAKVCDRVLLLAN 201
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 4e-22
Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGT-ILTNNNKPTKH 148
L+ ++ + GE L + GPSG+GK+T+L +L G L G + G + +
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+ +R G V QD L P TV E + LP + K++ I V A L E+
Sbjct: 77 LRRRIGVVFQDFRLLPDRTVYENVA------LPLEVRGKKEREIQRRVGAALRQVGLEHK 130
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
++F +SGGE++RV+IA ++ +P LL+ DEPT LD + R++ L L +RG
Sbjct: 131 A--DAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGT 188
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGR 295
T++ + H S V ++ +V++L +GR
Sbjct: 189 TVIVATHDL-SLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 4e-22
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 12/189 (6%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTML---NVLAGRLHQGHGLTGTILTNNNKPTKH 148
+L+ I + GE++ I+GPSGSGKST+L N L + G + + N+ K +
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDER 73
Query: 149 -ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
I + G V Q L+PHLT E ++F R S +E A ++A++GL +
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFGP--LRVRGASKEEAEKQARELLAKVGLAE--- 128
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
+ + +SGG+++RV+IA + + P L++ DEPTS LD + ++ + L + G
Sbjct: 129 --RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 268 KTIVTSMHQ 276
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-22
Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 22/215 (10%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL-HQGHGLTGTILTNNNKPTK 147
+ +L ++ + PGE +AI+G SGSGKST+L +L G Q G IL +
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ----QGRILLDG-VDLN 538
Query: 148 HISKRT-----GFVTQDDILYPHLTVRETLVFCS-LLRLPRTLSTKEKTSIAEAVMA-EL 200
I + G+V QD L+ ++RE + + + + E + +
Sbjct: 539 DIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPM 597
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
G +T +G +SGG+R+R+++A +L P +L+LDE TS LD ++ L
Sbjct: 598 GY----DTPVGEGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ +G+T++ H+ S+ D+++VL +G+
Sbjct: 653 LQI-LQGRTVIIIAHRLSTIRS--ADRIIVLDQGK 684
|
Length = 709 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 9e-22
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 26/215 (12%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN--------NN 143
+L G++ + GEI+AI+G SGSGKST+L++L G L +G +L N +N
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSLSKLSSN 75
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ K +K+ GF+ Q L P T E + L+ S KE A ++ ++GL
Sbjct: 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGL- 131
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA---YRLVSTL 260
E+ I N +SGGER+RV+IA ++ PSL++ DEPT LD+ A + L+ L
Sbjct: 132 --EHRI--NHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ +VT H + + D+VL + +G+
Sbjct: 188 NRELNTSFLVVT--HDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 1e-21
Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H 148
+L+G++ + PGE +AILGPSGSGKST+L LAG L L G + + +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP---LQGEVTLDGVPVSSLDQDE 406
Query: 149 ISKRTGFVTQDDILYPHL---TVRETLVFCSLLRLPR-TLSTKEKTSIAEAV-MAEL--G 201
+ +R QD HL TVRE L RL R + +E + E V +A+
Sbjct: 407 VRRRVSVCAQD----AHLFDTTVRENL------RLARPDATDEELWAALERVGLADWLRA 456
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L +T++G R +SGGER+R+++A +L + +L+LDEPT LD+ A L+ L
Sbjct: 457 LPDGLDTVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLL 515
Query: 262 SLVQRGKTIVTSMHQP 277
+ G+T+V H
Sbjct: 516 A-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 1e-21
Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 17/231 (7%)
Query: 75 STSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL 134
S + D G + ++ ++N ++ ++ GE +LGP+G+GKST+ +L G + G
Sbjct: 1 SNVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG- 59
Query: 135 TGTILTNNNKPTKHISK-RTGFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSI 192
T+L +++ G V Q D L P TVRE L VF + ST+E I
Sbjct: 60 KITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STRE---I 112
Query: 193 AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
+ + L + E+ + + +SGG ++R+++A ++ +P LLILDEPT+GLD A
Sbjct: 113 EAVIPSLLEFARLESK--ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 253 AYRLVSTLGSLVQRGKTIVTSMH--QPSSRVYQMFDKVLVLSEGRCLYFGK 301
+ + L SL+ RGKTI+ + H + + R + D++ VL GR + G+
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAER---LCDRLCVLESGRKIAEGR 218
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-21
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 15/209 (7%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTK 147
T L+ + ++ GE + +LGPSG GK+T L ++AG G G + P
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
+ V Q+ LYPH+TV + + F L K I E V L + E+
Sbjct: 72 ---RDIAMVFQNYALYPHMTVYDNIAF------GLKLRKVPKDEIDERVREVAELLQIEH 122
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR- 266
+ + + +SGG+R+RV++ ++ P + ++DEP S LD+ ++ + L L QR
Sbjct: 123 LL--DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL 180
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
G T + H M D++ V+++G+
Sbjct: 181 GTTTIYVTHD-QVEAMTMADRIAVMNDGQ 208
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 1e-21
Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 27/236 (11%)
Query: 102 SPGE-ILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKP---TKHISKRTG 154
P I A+ GPSGSGK++++N++AG G L G +L + K +R G
Sbjct: 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPE-KRRIG 79
Query: 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSF 214
+V QD L+PH TVR L + S + + + ++A LG+ + + +
Sbjct: 80 YVFQDARLFPHYTVRGNLRY------GMWKSMRAQF---DQLVALLGIEH-----LLDRY 125
Query: 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT-IVTS 273
+SGGE++RV+I +L P LL++DEP + LD ++ L L I+
Sbjct: 126 PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV 185
Query: 274 MHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDL 329
H V ++ D+V+VL G+ G E S F P P +L+
Sbjct: 186 SHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG---SPDFPPWLPREEQSSVLEG 237
|
Length = 352 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 34/232 (14%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
R +L ++ + G+ +AI+GPSGSGKST+L +L R + +G+IL + + + +
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDV--SSGSILIDG-QDIREV 68
Query: 150 S-----KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE-------KTSIAEAVM 197
+ + G V QD +L+ + T+ + R R +T E I + +M
Sbjct: 69 TLDSLRRAIGVVPQDTVLF-NDTIGYNI------RYGRPDATDEEVIEAAKAAQIHDKIM 121
Query: 198 AELGLTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
+TI+G RG +SGGE++RV+IA +L NP +L+LDE TS LD+
Sbjct: 122 ---RFPDGYDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ + L + +G+T + H+ S+ V DK++VL +GR + G E ++
Sbjct: 176 IQAALRDVS-KGRTTIVIAHRLSTIVNA--DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 2e-21
Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 20/134 (14%)
Query: 118 STMLNVLAGRLHQGHGLTGTILTNNN-----KPTKHISKRTGFVTQDDILYPHLTVRETL 172
ST+L ++ G L +GTIL + K + KR G V QD L+P LTVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 173 VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232
F L KE + AE + +GL + + +SGG+++RV+IA +
Sbjct: 58 FF--------GLRDKEADARAEEALERVGLPDF----LDREPVGTLSGGQKQRVAIARAL 105
Query: 233 LINPSLLILDEPTS 246
L P LL+LDEPT+
Sbjct: 106 LKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-21
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 52/210 (24%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-- 146
QE+ +L ++ + GE +A+LG SGSGKST+L +L G L G I + +
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG---EITLDGVPVSDL 69
Query: 147 -KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
K +S + Q P+L F
Sbjct: 70 EKALSSLISVLNQR----PYL-------F------------------------------- 87
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+T + N+ R SGGER+R+++A +L + +++LDEPT GLD +L+S + V
Sbjct: 88 -DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VL 145
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ KT++ H + + DK+L L G+
Sbjct: 146 KDKTLIWITHHLTGIEH--MDKILFLENGK 173
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 4e-21
Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP 145
A + L I + GE+L +LGPSG GK+T+LN++AG + H G+I T + KP
Sbjct: 9 ADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSI-TLDGKP 64
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ G V Q++ L P V++ + F L+L + ++ IA ++ ++GL
Sbjct: 65 VEGPGAERGVVFQNEGLLPWRNVQDNVAFG--LQL-AGVEKMQRLEIAHQMLKKVGLEGA 121
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
E +I +SGG+R+RV IA + NP LL+LDEP LD+
Sbjct: 122 E-----KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 4e-21
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 29/216 (13%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L+G++ V PGE+ A+LG +G+GKST++ +L+G ++ G IL + KP S R
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG-VYPPDS--GEILIDG-KPVAFSSPRD 79
Query: 154 ------GFVTQDDILYPHLTVRETLVFCSLLRLPRT----LSTKEKTSIAEAVMAELGLT 203
V Q+ L P+L+V E + L R P + K A ++A LGL
Sbjct: 80 ALAAGIATVHQELSLVPNLSVAENIF---LGREPTRRFGLIDRKAMRRRARELLARLGLD 136
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+T++G+ +S +R+ V IA + + +LILDEPT+ L RL + L
Sbjct: 137 IDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191
Query: 264 VQRGKTIV-TS--MHQPSSRVYQMFDKVLVLSEGRC 296
+G I+ S + + V+++ D++ VL +GR
Sbjct: 192 KAQGVAIIYISHRLDE----VFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 5e-21
Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 30/203 (14%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-----KRTGF 155
V PGE +A++GPSG+GKST+LN+L G + G+I N P + +
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGV-PLADADADSWRDQIAW 400
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE-------NT 208
V Q L+ T+ E + RL R ++ I EA+ GL + +T
Sbjct: 401 VPQHPFLFAG-TIAENI------RLARPDASDA--EIREALER-AGLDEFVAALPQGLDT 450
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
IG G+SGG+ +R+++A L + LL+LDEPT+ LD+ ++ L +L Q G+
Sbjct: 451 PIGEGG-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GR 508
Query: 269 TIVTSMHQPSSRVYQMFDKVLVL 291
T++ H+ + + D+++VL
Sbjct: 509 TVLLVTHRLALA--ALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 5e-21
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 13/202 (6%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR-TGFVTQD 159
+ GEI AI+GPSGSGKST+LN++AG G ++ + + R + Q+
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG--RVLINGVDVTAAPPADRPVSMLFQE 78
Query: 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGIS 219
+ L+ HLTV + + L P T E E +A +GL E + G +S
Sbjct: 79 NNLFAHLTVEQNV---GLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE-----LS 130
Query: 220 GGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPS 278
GGER+RV++A ++ + +L+LDEP + LD ++ L + T++ HQP
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190
Query: 279 SRVYQMFDKVLVLSEGRCLYFG 300
++ +V+ L GR G
Sbjct: 191 D-AKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-21
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 28/196 (14%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
ER + G++ ++ GE L + GP+G GK+T+L +LAG L +G + N +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNG----TAL 64
Query: 150 SKRTGFVTQDDILY--------PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+++ + +ILY P L+ E L F + + +I +A +A +G
Sbjct: 65 AEQRDEPHR-NILYLGHLPGLKPELSALENLHFW------AAIHGGAQRTIEDA-LAAVG 116
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
LT E+ +S G+++R+++A L L ILDEPT+ LD L L
Sbjct: 117 LTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171
Query: 262 SLVQRGKTIVTSMHQP 277
+ + RG ++ + HQ
Sbjct: 172 AHLARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 9e-21
Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 26/228 (11%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK----P 145
+ IL G++ + PG+ +A++G SG GKST++++L R + +G IL +
Sbjct: 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDP--TSGEILLDGVDIRDLN 71
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE----KTSIAEAVMAELG 201
+ + + G V+Q+ +L+ T+ E + + + T E K +I + +M
Sbjct: 72 LRWLRSQIGLVSQEPVLFD-GTIAENIRYG---KPDATDEEVEEAAKKANIHDFIM---S 124
Query: 202 LTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
L +T++G RG +SGG+++R++IA +L NP +L+LDE TS LD+ + +
Sbjct: 125 LPDGYDTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA 181
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L + +G+T + H+ S+ + D + VL G+ + G E M+
Sbjct: 182 LDRAM-KGRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 2e-20
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 14/208 (6%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-----TNNNKPTKH 148
+ ++ V GEI A+LG +G+GKST++ +L G G I P
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG---EIRVDGKEVRIKSPRDA 76
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
I G V Q +L P LTV E ++ + ++ + + + GL
Sbjct: 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP----- 131
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+ ++ + +S GE++RV I + LLILDEPT+ L A L L L GK
Sbjct: 132 VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRC 296
TI+ H+ V + D+V VL G+
Sbjct: 192 TIIFITHK-LKEVMAIADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 15/210 (7%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN--NKPTKHISK 151
++G+ V GE+ LGP+G+GK+T + +L L G T + + +P K + +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-TARVAGYDVVREPRK-VRR 66
Query: 152 RTGFVTQDDILYPHLTVRETLVFCS-LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTII 210
G V Q + LT RE L L LP+ E AE ++ L +
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPK----DEAEERAEELLELFELGEA----- 117
Query: 211 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTI 270
+ + SGG R+R+ IA ++ P +L LDEPT+GLD + + +L + G TI
Sbjct: 118 ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
+ + H ++ D++ ++ GR + G
Sbjct: 178 LLTTHY-MEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 2e-20
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 16/196 (8%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG----LTGTILTNNNK 144
E +IL G+ +V GE +A++G SGSGKST+L +LAG L G L G L ++
Sbjct: 21 HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG-LDDGSSGEVSLVGQPLHQMDE 79
Query: 145 PTKHI--SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ +K GFV Q +L P L E + +LLR + ++ A+A++ +LGL
Sbjct: 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNG---AKALLEQLGL 136
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
K + + +SGGE++RV++A P +L DEPT LD ++ L S
Sbjct: 137 GKRLDHLPAQ-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
Query: 263 LVQR-GKTIVTSMHQP 277
L + G T++ H
Sbjct: 192 LNREHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-20
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 25/210 (11%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGF--VTQ 158
V+ GEI+AI+GPSG+GKST+LN++AG + +G+I N+ T + + Q
Sbjct: 21 VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIR-- 216
++ L+ HLTVR+ + L +EK ++G I + R
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKV---VDAAQQVG--------IADYLDRLP 126
Query: 217 -GISGGERKRVSIAHEMLINPSLLILDEPTSGLDS---TAAYRLVSTLGSLVQRGKTIVT 272
+SGG+R+RV++A ++ +L+LDEP S LD LV L S +R +T++
Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS--ERQRTLLM 184
Query: 273 SMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302
H S + ++ V+S+G+
Sbjct: 185 VTHHLSDAR-AIASQIAVVSQGKIKVVSDC 213
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 70/240 (29%), Positives = 104/240 (43%), Gaps = 16/240 (6%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTN-- 141
++++ IL G+ V GEI AI+GP+GSGKST+ +AG H + +T GTIL
Sbjct: 7 HVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQ 64
Query: 142 --NNKPTKHISKRTGFVT-QDDILYPHLTV----RETLVFCSLLRLPRTLSTKEKTSIAE 194
++ F+ Q P ++ R L R L + + +
Sbjct: 65 DLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK 124
Query: 195 AVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
A +A LG+ + + S G SGGE+KR I L+ P L ILDE SGLD A
Sbjct: 125 AKLALLGMDE---EFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314
+ + L + ++ + H Y D V VL +GR + G E E G+
Sbjct: 182 IVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG-DVELAKELEEKGY 240
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 4e-20
Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN- 143
T + L+ ++ G I+ LGP+G+GKST + ++ G L +G++
Sbjct: 9 TKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGED 65
Query: 144 --KPTKHISKRTGFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ K + + G++ + + LY + VRE L F + + K + E ++ +
Sbjct: 66 VLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK---GQLLKQRVEE-MIELV 121
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL ++ IG +S G R+RV +A ++ +P +LILDEPT+GLD + + +
Sbjct: 122 GLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVI 176
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
++ + KTI+ S H V + D+V+++++G+
Sbjct: 177 KNIGK-DKTIILSTHI-MQEVEAICDRVIIINKGK 209
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-20
Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 30/230 (13%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH---QGH-GLTGTILTN-NNKPT 146
L I ++PGE +AI+GPSG+GKST+L + RL G L GT +T K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSSGSILLEGTDITKLRGKKL 74
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP--RTLS---TKEKTSIAEAVMAELG 201
+ + +R G + Q L LTV E ++ L P R+L ++E A + + +G
Sbjct: 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG 134
Query: 202 L-----TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
L + + +SGG+++RV+IA + P L++ DEP + LD + ++
Sbjct: 135 LADKAYQRADQ----------LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV 184
Query: 257 VSTLGSLVQR-GKTIVTSMHQPS-SRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ L + + G T++ ++HQ ++ Y D+++ L G ++ G SE
Sbjct: 185 MDYLKRINKEDGITVIINLHQVDLAKKYA--DRIVGLKAGEIVFDGAPSE 232
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 5e-20
Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 38/217 (17%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GRLH-QGHGLTGTILTNNNKP 145
+ G++ V GEI +LGP+G+GK+T + +L GR GH + +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV--------RE 67
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ + +R G V QD + LT E L + L +P E+ + ++ +GL +
Sbjct: 68 PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPG----AERRERIDELLDFVGLLE 123
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ ++ SGG R+R+ IA ++ P +L LDEPT GLD + + L
Sbjct: 124 AADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178
Query: 265 QR-GKTIVTSMHQPSSRVY-----QMFDKVLVLSEGR 295
+ G TI+ + H Y Q+ D+V ++ GR
Sbjct: 179 EEFGMTILLTTH------YMEEAEQLCDRVAIIDHGR 209
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 5e-20
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 26/224 (11%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHI 149
IL G++ V GEI+A+LG +G+GK+T+L + G L G G +T P
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT--GLPPHER 72
Query: 150 SKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA-----VMAELGLT 203
++ G+V + ++P LTV E L+ + R K K + + E
Sbjct: 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA----KRKARLERVYELFPRLKERRKQ 128
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+SGGE++ ++IA ++ P LL+LDEP+ GL + + L
Sbjct: 129 LAGT----------LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
G TI+ Q + ++ D+ VL GR + G +E ++
Sbjct: 179 RDEGVTILLV-EQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 1e-19
Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 19/209 (9%)
Query: 104 GEILAILGPSGSGKSTMLNVL-------AGRLHQGHGLTGTILTNNNKPTKHISKRTGFV 156
GE L +LGPSG+GKS++L VL +G L+ T ++K + + + G V
Sbjct: 28 GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87
Query: 157 TQDDILYPHLTVRETLVF--CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSF 214
Q L+PHLTV+E L+ C +L L + + + AE ++ L L + +
Sbjct: 88 FQQYNLWPHLTVQENLIEAPCRVLGLSK----DQALARAEKLLKRLRLKP-----YADRY 138
Query: 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGG+++RV+IA +++ P +L+ DEPT+ LD ++VS + L + G T V
Sbjct: 139 PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVT 198
Query: 275 HQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303
H+ + +V+ + G + G S
Sbjct: 199 HEVEV-ARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-19
Identities = 63/209 (30%), Positives = 110/209 (52%), Gaps = 19/209 (9%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-- 150
+LN I+ + G+++A+LGPSGSGK+T+L ++AG HQ G + + +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH----IRFHGTDVSRLHAR 72
Query: 151 -KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE---AVMAELGLTKCE 206
++ GFV Q L+ H+TV + + F L LPR +E+ + A V L + +
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAF-GLTVLPR----RERPNAAAIKAKVTQLLEMVQLA 127
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ + + + +SGG+++RV++A + + P +L+LDEP LD+ L L L +
Sbjct: 128 H--LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185
Query: 267 GK-TIVTSMHQPSSRVYQMFDKVLVLSEG 294
K T V H ++ D+V+V+S+G
Sbjct: 186 LKFTSVFVTHD-QEEAMEVADRVVVMSQG 213
|
Length = 353 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 32/219 (14%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGR-LHQGHGLTGTILTN 141
+L I+ + GE +A++GPSGSGKST++N++ +GR L GH + L +
Sbjct: 14 GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLAS 73
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ ++ G V+QD L+ + TV E + + + +E A A A
Sbjct: 74 -------LRRQIGLVSQDVFLF-NDTVAENIAYGR-----PGATREEVEEAARAANAHEF 120
Query: 202 LTKCEN---TIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+ + T+IG RG+ SGG+R+R++IA +L +P +LILDE TS LD+ + +
Sbjct: 121 IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ L L++ T V + H+ S+ + D+++VL +G+
Sbjct: 178 QAALERLMKNRTTFVIA-HRLST--IENADRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 66/237 (27%), Positives = 106/237 (44%), Gaps = 10/237 (4%)
Query: 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTNN-- 142
A + E IL G+ ++ GEI AI+GP+GSGKST+ V+AG H + + G IL
Sbjct: 15 ASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYKILEGDILFKGES 72
Query: 143 --NKPTKHISKRTGFVT-QDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSIAEAVMA 198
+ + + F+ Q I P ++ + L + + R + L + E +
Sbjct: 73 ILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINE 132
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
+L L + + + + G SGGE+KR I L++ L ILDE SGLD A +
Sbjct: 133 KLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFS 315
+ L+ +I+ H Y D V V+ G+ + G +E E G+
Sbjct: 193 GINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG-DAELAKELEKKGYD 248
|
Length = 252 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 37/206 (17%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTML---NVLAGRLHQGHGLTGTILTNNN----KP 145
+L G++ + G++++I+G SGSGKST L N L + G I N K
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSAGS-----IRVNGEEIRLKR 74
Query: 146 TKH-------------ISKRTGFVTQDDILYPHLTVRETLVFCSL--LRLPRTLSTKEKT 190
K + R G V Q L+ H+TV E ++ + L + + E
Sbjct: 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK----AEAI 130
Query: 191 SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
AE +A++G+ + + ++ +SGG+++RV+IA + + P +++ DEPTS LD
Sbjct: 131 ERAEKYLAKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185
Query: 251 TAAYRLVSTLGSLVQRGKTIVTSMHQ 276
++ + L + G+T+V H+
Sbjct: 186 ELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 2e-19
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 45/187 (24%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150
R +L ++ ++PGE + ++G +G+GKST+L +LAG L +G +
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------- 65
Query: 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSI------------------ 192
R G+++Q+ L P TV + V L L+ E+
Sbjct: 66 LRVGYLSQEPPLDPEKTVLDY-VIEGFGELRELLAELEEAYALLADPDDELLAELEALLE 124
Query: 193 ----------AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242
AE + LG E+ + + +SGG R+RV++A +L P LL+LD
Sbjct: 125 ELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLD 178
Query: 243 EPTSGLD 249
EPT+ LD
Sbjct: 179 EPTNHLD 185
|
Length = 530 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-19
Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 29/202 (14%)
Query: 54 RIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQ-----ERTILNGITGMVSPGEILA 108
R+ E +EG F + R +L ++ + G+ +A
Sbjct: 293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIA 352
Query: 109 ILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD-DILYPHLT 167
I+GP+G+GKST+L +LAG L L+GT+ + + G+ Q D L P T
Sbjct: 353 IVGPNGAGKSTLLKLLAGEL---GPLSGTV-------KVGETVKIGYFDQHRDELDPDKT 402
Query: 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVS 227
V E L A + G T E + +SGGE+ R+
Sbjct: 403 VLEEL---------SEGFPDGDEQEVRAYLGRFGFT-GE---DQEKPVGVLSGGEKARLL 449
Query: 228 IAHEMLINPSLLILDEPTSGLD 249
+A +L P+LL+LDEPT+ LD
Sbjct: 450 LAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-19
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 27/198 (13%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
ERT+ + ++ ++ GE L I GP+G+GK+T+L +LAG L G +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP---DAGEVYWQGEPIQNVR 70
Query: 150 SKRTGFVTQDDILY--------PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+LY LT E L F +T +A++G
Sbjct: 71 ES-----YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAAT------IWEALAQVG 119
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L E+ +G +S G+++RV++A L L ILDEP + LD L + +
Sbjct: 120 LAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMA 174
Query: 262 SLVQRGKTIVTSMHQPSS 279
+ +G ++ + HQP
Sbjct: 175 AHAAQGGIVLLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 4e-19
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 39/226 (17%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ--------GHGLTGTILTN 141
R L+ ++ V PG +A+LGP+G+GKST+ ++L GH L
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR------ 66
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAEL 200
P + R G V Q L L+VR+ L + +L L R E + ++A L
Sbjct: 67 -RAP-RAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSR----AEARARIAELLARL 120
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL + + +R ++GG R+RV IA +L P+LL+LDEPT GLD + + + +
Sbjct: 121 GLAE-----RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV 175
Query: 261 GSLVQ-RGKTIVTSMH-----QPSSRVYQMFDKVLVLSEGRCLYFG 300
+L + +G +++ + H + D+++VL GR L G
Sbjct: 176 RALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVLADG 214
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 5e-19
Identities = 68/238 (28%), Positives = 105/238 (44%), Gaps = 39/238 (16%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK--- 144
+ T L ++ V GEIL ++GP+G+GKST+L +AG L +G+I
Sbjct: 6 VAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEA 61
Query: 145 -PTKHISKRTGFVTQDD---ILYPHLTVRETLVFCSL-LRLPRTLSTKEKTSIAEAVMAE 199
+++ +++Q P VF L L P T+ S V
Sbjct: 62 WSAAELARHRAYLSQQQTPPFAMP--------VFQYLTLHQPDKTRTEAVASALNEVAEA 113
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INPS--LLILDEPTSGLDST- 251
LGL + +SGGE +RV +A +L INP+ LL+LDEP + LD
Sbjct: 114 LGLDDKLGRSVNQ-----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168
Query: 252 --AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
A RL+S L G +V S H + + D+V +L +G+ L G+ E ++
Sbjct: 169 QAALDRLLSELCQQ---GIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
|
Length = 248 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 5e-19
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 42/225 (18%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKP 145
QE L+ ++ + PGE +AI+G GSGKST+L +L G G L G + +
Sbjct: 476 QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ + G+V QD L+ + T+R+ + + + I A G+T
Sbjct: 536 D--LRRNIGYVPQDPRLF-YGTLRDNIALGAPY--------ADDEEILRAAEL-AGVT-- 581
Query: 206 ENTIIGNSFIR---------------GISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
F+R +SGG+R+ V++A +L +P +L+LDEPTS +D+
Sbjct: 582 -------EFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634
Query: 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ R L + GKT+V H+ S + + D+++V+ GR
Sbjct: 635 RSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGR 676
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 5e-19
Identities = 64/209 (30%), Positives = 104/209 (49%), Gaps = 12/209 (5%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L G+ + GE ++++G SG GKST+LN+++G G G IL K
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG--GVIL--EGKQITEPGPDR 56
Query: 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS 213
V Q+ L P LTVRE + ++ R+ LS E+ +I E +A +GLT+ + G
Sbjct: 57 MVVFQNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ- 114
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVT 272
+SGG ++RV+IA + I P +L+LDEP LD+ L L + + T++
Sbjct: 115 ----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 273 SMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
H + + D+V++L+ G G+
Sbjct: 171 VTHDVDEALL-LSDRVVMLTNGPAANIGQ 198
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 5e-19
Identities = 50/168 (29%), Positives = 92/168 (54%), Gaps = 14/168 (8%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
++R ++N ++ V+ GEI+ +LGP+G+GK+T ++ G + +G IL ++ T
Sbjct: 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDIT 69
Query: 147 KH-ISKRT----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
K + KR G++ Q+ ++ LTV + ++ L + L E+ +A++ E
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIM-AVLEIREKDLKKAERKEELDALLEEFH 128
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+T ++ S +SGGER+RV IA + NP ++LDEP +G+D
Sbjct: 129 ITHLRDSK-AYS----LSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 7e-19
Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK 144
T + ILN ++ + G+I A++GP+G GKST+L A L G + +K
Sbjct: 9 TVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG----TVFLGDK 64
Query: 145 PTKHIS-----KRTGFVTQDDILYPHLTVRETLVF--CSLLRLPRTLSTKEKTSIAEAVM 197
P +S +R + Q + +TVRE + + L L LS ++ + +A M
Sbjct: 65 PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA-M 123
Query: 198 AELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257
+ + + + + +SGG+R+R +A + + +++LDEPT+ LD L+
Sbjct: 124 EQTRINH-----LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELM 178
Query: 258 STLGSLVQRGKTIVTSMH--QPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ L +GKT+VT +H +SR D ++VL+ G + G E M+
Sbjct: 179 RLMRELNTQGKTVVTVLHDLNQASR---YCDHLVVLANGHVMAQGTPEEVMT 227
|
Length = 255 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 1e-18
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 34/213 (15%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN-----NNKPTKHISKRTGF 155
V GEIL I G G+G++ + L G +G IL + P I +
Sbjct: 282 VRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRDAIKAGIAY 338
Query: 156 VTQD---DILYPHLTVRETLVFCSLLRLPRT--LSTKEKTSIAEAVMAELGLTKC--ENT 208
V +D + L +++ E + SL R R + +++ ++AE + L + K
Sbjct: 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSPEQ 397
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA---YRLVSTLGSLVQ 265
IG +SGG +++V +A + +P +LILDEPT G+D A YRL+ L
Sbjct: 398 PIGT-----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIR---ELAA 449
Query: 266 RGKTIVTSMHQPSS---RVYQMFDKVLVLSEGR 295
GK I+ M SS + + D++LV+ EGR
Sbjct: 450 EGKAIL--MI--SSELPELLGLSDRILVMREGR 478
|
Length = 500 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 2e-18
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 26/194 (13%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--K 147
R + +G++ ++ GE L + GP+GSGK+T+L ++AG L GTI +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPD 70
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
++ + + P LTV E L F + L +E IA A + +GL +
Sbjct: 71 VAE-ACHYLGHRNAMKPALTVAENLEFWA-----AFLGGEE-LDIAAA-LEAVGLAPLAH 122
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-- 265
G +S G+++RV++A ++ N + ILDEPT+ LD+ A V+ L++
Sbjct: 123 LPFGY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA----VALFAELIRAH 173
Query: 266 --RGKTIVTSMHQP 277
+G ++ + H P
Sbjct: 174 LAQGGIVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 22/216 (10%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKST---MLNVL----AGRLHQGHGLTGTILTN 141
+ T L ++ V GEI I+G SG+GKST +N L +G + + GT LT
Sbjct: 16 GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL----VDGTDLTL 71
Query: 142 -NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ K + +R G + Q L TV E + LP ++ K I E V+ L
Sbjct: 72 LSGKELRKARRRIGMIFQHFNLLSSRTVFENVA------LPLEIAGVPKAEIEERVLELL 125
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
L E+ +++ +SGG+++RV IA + NP +L+ DE TS LD +++ L
Sbjct: 126 ELVGLEDK--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183
Query: 261 GSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ + G TIV H+ V ++ D+V V+ +G
Sbjct: 184 RDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGE 218
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-18
Identities = 62/242 (25%), Positives = 109/242 (45%), Gaps = 25/242 (10%)
Query: 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGH--- 132
D T + T+L+G+ V+ GE +A++GPSGSGKST+L +L + +G
Sbjct: 2 RFSDV--TKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59
Query: 133 ---------GLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT 183
G G ++ + K + + + G V Q L+PH TV + + +L L
Sbjct: 60 EGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMA 119
Query: 184 LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243
+ EK ++ M L + +SGG+++RV+IA + + P +++ DE
Sbjct: 120 RAEAEKRAMELLDMVGLADKA-------DHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172
Query: 244 PTSGLDSTAAYRLVSTLGSLVQRGK-TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302
TS LD +++ + L T++ H+ + D+V +GR + GK
Sbjct: 173 VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE-MGFAREFADRVCFFDKGRIVEQGKP 231
Query: 303 SE 304
E
Sbjct: 232 DE 233
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 19/209 (9%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISK 151
T L I+ V GE + +LGPSG GK+T+L ++AG Q GTI T+ +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQ 74
Query: 152 RT--GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+ G V Q L+P+LTV + + + L R + E ++ +GL E
Sbjct: 75 KRDYGIVFQSYALFPNLTVADNIAY-GLK--NRGMGRAEVAERVAELLDLVGLPGSERKY 131
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
G +SGG+++RV++A + +P LL+LDEP S LD+ L + + L QR
Sbjct: 132 PGQ-----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL-QRRLG 185
Query: 270 IVTSM--H-QPSSRVYQMFDKVLVLSEGR 295
+ T M H Q + M D+++V++ G
Sbjct: 186 VTTIMVTHDQEEALS--MADRIVVMNHGV 212
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 3e-18
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 17/191 (8%)
Query: 109 ILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVTQDDILYPH 165
+LGPSG GK+T+L +LAG G L G +TN +HI V Q L+PH
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHI----NMVFQSYALFPH 56
Query: 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225
+TV E + F + + I V+ L L + E + +SGG+++R
Sbjct: 57 MTVEENVAF------GLKMRKVPRAEIKPRVLEALRLVQLEE--FADRKPHQLSGGQQQR 108
Query: 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQM 284
V++A ++ P +L+LDEP S LD ++ L ++ ++ G T V H M
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD-QEEAMTM 167
Query: 285 FDKVLVLSEGR 295
D++ ++ +G+
Sbjct: 168 SDRIAIMRKGK 178
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 3e-18
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 30/217 (13%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKST---MLNVL----AGRLH-QGHGLTGTILTNNN 143
T L+ ++ + GEI I+G SG+GKST ++N+L +G + G LT +
Sbjct: 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTAL----SE 75
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV--MAEL- 200
+ + ++ G + Q L TV E + F P L+ K I + V + EL
Sbjct: 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAF------PLELAGVPKAEIKQRVAELLELV 129
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL+ + + +SGG+++RV+IA + NP +L+ DE TS LD ++ L
Sbjct: 130 GLSDKAD-----RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL 184
Query: 261 GSLVQR-GKTIVTSMHQPSSRVYQMF-DKVLVLSEGR 295
+ + G TIV H+ V + D+V VL +GR
Sbjct: 185 KDINRELGLTIVLITHEM--EVVKRICDRVAVLDQGR 219
|
Length = 339 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 4e-18
Identities = 56/222 (25%), Positives = 103/222 (46%), Gaps = 20/222 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNKP 145
+ L G++ V GEI+A+LG +G+GK+T+L + G L + +G I+ + P
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG-LVRPR--SGRIIFDGEDITGLP 71
Query: 146 TKHISKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA--VMAELGL 202
++ +V + ++P LTV E L+ + R + ++ + E + E
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER-- 129
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
N G +SGGE++ ++IA ++ P LL+LDEP+ GL + +
Sbjct: 130 ---RNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
L + G + + Q + ++ D+ VL GR + G +E
Sbjct: 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
|
Length = 237 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 5e-18
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 29/214 (13%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNKPTK 147
+++ + ++ GE L +LGPSG GK+T+L ++AG +G I+ + + P +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-FETPD--SGRIMLDGQDITHVPAE 84
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
+ T F Q L+PH+TV E + F LR+ +T I VM L + + E
Sbjct: 85 NRHVNTVF--QSYALFPHMTVFENVAFG--LRMQKT----PAAEITPRVMEALRMVQLEE 136
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL----VSTLGSL 263
+SGG+++RV+IA ++ P +L+LDE S LD Y+L + L +L
Sbjct: 137 F--AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD----YKLRKQMQNELKAL 190
Query: 264 VQR--GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
QR G T V H M D+++V+ +GR
Sbjct: 191 -QRKLGITFVFVTHD-QEEALTMSDRIVVMRDGR 222
|
Length = 375 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 6e-18
Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 35/208 (16%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNN------NKP 145
LN ++ P EI A++GPSGSGKST+L + L+ +TG+I+ N
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
T + K G V Q +P +++ E +V+ LRL K+K + EAV
Sbjct: 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLK---GIKDKQVLDEAV--------- 125
Query: 206 ENTIIGNSF-----------IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
E ++ G S G+SGG+++RV IA + +P +++LDEPTS LD +A
Sbjct: 126 EKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAG 185
Query: 255 RLVSTLGSLVQR-GKTIVTSMHQPSSRV 281
++ TL L +VT Q +SR+
Sbjct: 186 KIEETLLGLKDDYTMLLVTRSMQQASRI 213
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 8e-18
Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 19/232 (8%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNN--NK 144
E L + + G A +G +GSGKST++ +L G G + T++T+ NK
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT--LSTKEKTSIAEAVMAELGL 202
K I K+ G V Q +P + E V + P+ +S +E ++A +A +G+
Sbjct: 79 DIKQIRKKVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGI 134
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ E+ N F +SGG+ +RV+IA + + P +L+LDEPT+GLD L++
Sbjct: 135 S--ESLFEKNPF--ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK 190
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314
L Q G TIV H V D V VL +G+ + GK + F+ V F
Sbjct: 191 LHQSGMTIVLVTHLMDD-VANYADFVYVLEKGKLVLSGKPKDI---FQDVDF 238
|
Length = 280 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-17
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN---NKPT 146
R + +G++ ++ GE L + GP+GSGK+T+L +LAG L G +L N +
Sbjct: 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP---LAGRVLLNGGPLDFQR 68
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
I++ ++ + L+V E L F E +A +GL E
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF---------WHADHSDEQVEEALARVGLNGFE 119
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ + +S G+++RV++A +L L ILDEPT+ LD R + R
Sbjct: 120 DRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 267 GKTIVTSMHQP 277
G +V + HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 62/236 (26%), Positives = 113/236 (47%), Gaps = 31/236 (13%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL---------HQGHGLT 135
+ + +L+ ++ + G I +I+GP+G+GKST+L+ + RL G LT
Sbjct: 8 SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLKKDSGEITIDGLELT 66
Query: 136 GTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP--RTLSTKEKTSIA 193
T P+K ++K+ + Q++ + LTVR+ + F R P + TKE I
Sbjct: 67 ST-------PSKELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRII 116
Query: 194 EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253
+ L L + + ++ +SGG+R+R IA + + ++LDEP + LD +
Sbjct: 117 NEAIEYLHLED-----LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 254 YRLVSTLGSLV-QRGKTIVTSMHQPS-SRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+++ L L + GKTIV +H + + Y D ++ L G+ + G E +
Sbjct: 172 VQIMKILRRLADELGKTIVVVLHDINFASCYS--DHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 1e-17
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 15/207 (7%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKH 148
ILN I+ V GE +AI GPSG GKST+L ++A G L + KP +
Sbjct: 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP-EA 74
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
++ + Q L+ TV + L+F +R R +A + + LTK
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTK---- 129
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRG 267
I +SGGE++R+++ + P +L+LDE TS LD + + + V ++
Sbjct: 130 -----NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEG 294
++ H + + DKV+ L G
Sbjct: 185 VAVLWITHDKDQAI-RHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 38/269 (14%)
Query: 55 IKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSG 114
IKIEN + I+ G+ E+ L+ + + GE + ++G +G
Sbjct: 3 IKIENLT-------HIYMEGTPF------------EKKALDNVNIEIEDGEFVGLIGHTG 43
Query: 115 SGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171
SGKST++ L G L G + G +T+ I K+ G V Q YP + E
Sbjct: 44 SGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQ----YPEYQLFEE 99
Query: 172 LVFCSLLRLPRTLSTKE---KTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSI 228
+ + P L E + + A M +GL S +SGG+++RV+I
Sbjct: 100 TIEKDIAFGPINLGLSEEEIENRVKRA-MNIVGLDY--EDYKDKSPFE-LSGGQKRRVAI 155
Query: 229 AHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK-TIVTSMHQPSSRVYQMFDK 287
A + + P +LILDEPT+GLD +++ + L + TI+ H V ++ D+
Sbjct: 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED-VAKLADR 214
Query: 288 VLVLSEGRCLYFGKGSEA---MSYFESVG 313
++V+++G+C G E + ES+G
Sbjct: 215 IIVMNKGKCELQGTPREVFKEVETLESIG 243
|
Length = 287 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 62/191 (32%), Positives = 98/191 (51%), Gaps = 20/191 (10%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGRLHQGHGLTGTILTNNNKP 145
L IT GE L +LGPSG+GKS++L VL +G L+ T ++K
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVF--CSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ + + G V Q L+PHLTV++ L+ C +L L + + AE ++ L L
Sbjct: 77 IRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR----AEKLLERLRLK 132
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ F +SGG+++RV+IA +++ P +L+ DEPT+ LD ++VS + L
Sbjct: 133 P-----YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
Query: 264 VQRGKT--IVT 272
+ G T IVT
Sbjct: 188 AETGITQVIVT 198
|
Length = 242 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 52/273 (19%)
Query: 55 IKIENKSKEGSSFRRIFNRGSTSSTDD----QGSTAKIQERTILNGITGMVSPGEILAIL 110
IK+ N SK+ RI++ S S K+ E L I+ + GE + I+
Sbjct: 4 IKVSNVSKK----FRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGII 59
Query: 111 GPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY------- 163
G +G+GKST+L ++AG KPT K TG V L
Sbjct: 60 GHNGAGKSTLLKLIAGIY---------------KPTSGKVKVTGKVAP---LIELGAGFD 101
Query: 164 PHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFI----RGI 218
P LT RE + +L L R ++ I E AELG FI +
Sbjct: 102 PELTGRENIYLRGLILGLTRKEIDEKVDEIIE--FAELG-----------DFIDQPVKTY 148
Query: 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278
S G R++ + + P +L+LDE + D+ + + L LV++ KTIV H
Sbjct: 149 SSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG 208
Query: 279 SRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311
+ + Q D+ + L G+ G E + +E
Sbjct: 209 A-IKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 70/221 (31%), Positives = 108/221 (48%), Gaps = 20/221 (9%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTK 147
+ LN I + +A++GP+G+GKST+ G L G + G +T N +
Sbjct: 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN--IR 74
Query: 148 HISKRTGFVTQ---DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ K G V Q D I P TV + + F P L E+T +A V + L +
Sbjct: 75 EVRKFVGLVFQNPDDQIFSP--TVEQDIAFG-----PINLGLDEET-VAHRVSSALHMLG 126
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
E + + +SGGE+KRV+IA + + P +L+LDEPT+GLD L+ L L
Sbjct: 127 LEE--LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLP 184
Query: 265 QR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ G T++ S HQ V +M D + V+ +GR + +G E
Sbjct: 185 ETYGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
Length = 277 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-17
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 22/200 (11%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR--------LHQGHGLTGTILTNNNK 144
+L+ ++ + GE++AI+G SGSGKST+L++L G + G ++ L++ K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSK--LSSAAK 81
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+++ GF+ Q L P T E + L+ + + A ++A +GL
Sbjct: 82 AELR-NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR---ALEMLAAVGLEH 137
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
N +SGGER+RV+IA ++ NP L++ DEPT LD+ A + LG L
Sbjct: 138 -----RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192
Query: 265 QRGKT---IVTSMHQPSSRV 281
+ T +VT Q + R+
Sbjct: 193 RLQGTAFLVVTHDLQLAKRM 212
|
Length = 233 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 3e-17
Identities = 63/231 (27%), Positives = 117/231 (50%), Gaps = 32/231 (13%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GR-LHQGHGLTGTILTN 141
IL+ I+ + PGE++ I+G SGSGKST+ ++ GR L GH L
Sbjct: 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL-ALADPA 72
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ ++ G V Q+++L+ + ++R+ + L + E+ I A +A
Sbjct: 73 ------WLRRQVGVVLQENVLF-NRSIRDNIA------LADPGMSMERV-IEAAKLAGAH 118
Query: 202 LTKCE-----NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
E +TI+G G+SGG+R+R++IA ++ NP +LI DE TS LD + + +
Sbjct: 119 DFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ + + G+T++ H+ S+ + D+++V+ +GR + G E ++
Sbjct: 178 MRNMHDICA-GRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-17
Identities = 72/251 (28%), Positives = 113/251 (45%), Gaps = 20/251 (7%)
Query: 55 IKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSG 114
I++ N SK S+R + K +E L GI+ + GEI+ +GP+G
Sbjct: 1 IEVSNLSK---SYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNG 57
Query: 115 SGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISK---RTGFVT-QDDILYPHLTVRE 170
+GK+T L +L+G L +G + P K K R G V Q L+ L V +
Sbjct: 58 AGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114
Query: 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230
+ LL L + + L L + + ++ +R +S G+R R IA
Sbjct: 115 SF---YLLAAIYDLPPARFKKRLDELSELLDLEE-----LLDTPVRQLSLGQRMRAEIAA 166
Query: 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVL 289
+L P +L LDEPT GLD A + + L +RG T++ + H + + +VL
Sbjct: 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD-IEALARRVL 225
Query: 290 VLSEGRCLYFG 300
V+ +GR LY G
Sbjct: 226 VIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 6e-17
Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 16/224 (7%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN----NKP 145
+ T+L+G+ V G ++ ++GP+G+GK+T+L + G L GT+L
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALS 71
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ S+R V QD L VR+ + + R P T A + E + +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVV---EMGRTPHRSRFDTWTETDRAAV-ERAMERT 127
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+ + +SGGER+RV +A + +L+LDEPT+ LD R + + LV
Sbjct: 128 GVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD 187
Query: 266 RGKTIVTSMH--QPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
GKT V ++H ++R D++++L++GR G ++ ++
Sbjct: 188 DGKTAVAAIHDLDLAAR---YCDELVLLADGRVRAAGPPADVLT 228
|
Length = 402 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 1e-16
Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTIL---TNNNKPTKHISKRTGF 155
V G A++G +GSGKST+L L G L +G G I+ T+ K K + K+ G
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV 88
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRT--LSTKEKTSIAEAVMAELGLTK--CENTIIG 211
V Q +P + E V + P+ + ++ IA + +GL E +
Sbjct: 89 VFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE 144
Query: 212 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
+SGG+ +RV+IA + + P +L+LDEPT+GLD A ++ S+ Q G+T+V
Sbjct: 145 ------LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVV 198
Query: 272 TSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314
H V D V +L +G + G S+ F+ V F
Sbjct: 199 LVTHLMDD-VADYADYVYLLEKGHIISCGTPSDV---FQEVDF 237
|
Length = 288 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 58/214 (27%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS---------K 151
V GEI I+G SGSGKST+L + + G +L + + +S K
Sbjct: 47 VREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG---KVLIDG-QDIAAMSRKELRELRRK 102
Query: 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG 211
+ V Q L PH TV E + F L + + + E+ A + +GL E+
Sbjct: 103 KISMVFQSFALLPHRTVLENVAFG--LEV-QGVPRAEREERAAEALELVGLEGWEH---- 155
Query: 212 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTI 270
+ +SGG ++RV +A + ++P +L++DE S LD + L L + KTI
Sbjct: 156 -KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTI 214
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
V H + ++ D++ ++ +GR + G E
Sbjct: 215 VFITHDLDEAL-RLGDRIAIMKDGRLVQVGTPEE 247
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 25/225 (11%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKP 145
E L ++ ++ GE +AILG +GSGKST+ +L G L G + G ++ N
Sbjct: 20 SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL- 78
Query: 146 TKHISKRTGFVTQD-DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
K I K+ G + Q+ D + TV + + F L + + K+ I + + ++G+
Sbjct: 79 -KEIRKKIGIIFQNPDNQFIGATVEDDIAF-GLEN--KKVPPKKMKDIIDDLAKKVGMED 134
Query: 205 CENTIIGNSFIR----GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
++ +SGG+++RV+IA + +NP ++I DE TS LD + +
Sbjct: 135 ---------YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 261 GSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
L R KT+++ H + + DKV+V SEG+ + GK E
Sbjct: 186 VDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKE 228
|
Length = 271 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 62 KEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTML 121
S+ + F +G+ E+ LNG++ ++ G+ + ++G +G+GKST+L
Sbjct: 2 ISLSNATKTFFKGT------------PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLL 49
Query: 122 NVLAGRLHQGHGLTGTILTN----NNKPTKHISKRTGFVTQD--DILYPHLTVRETLVFC 175
N +AG L +G IL + K + V QD P LT+ E L
Sbjct: 50 NAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA 106
Query: 176 SLLRLPRTLSTKEKTSIAEAVMAEL-----GLTKCENTIIGNSFIRGISGGERKRVSIAH 230
R LS+ + L GL + IG +SGG+R+ +S+
Sbjct: 107 ESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLM 161
Query: 231 EMLINPSLLILDEPTSGLDSTAA 253
L P +L+LDE T+ LD A
Sbjct: 162 ATLHPPKILLLDEHTAALDPKTA 184
|
Length = 263 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 27/218 (12%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-- 150
+L I+ + PGE + I+G +GSGKS++L L RL + G+IL + I
Sbjct: 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSS--GSILI-DGVDISKIGLH 74
Query: 151 ---KRTGFVTQDDILYPHLTVRETLVF---CSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
R + QD +L+ T+R L S L + L E+ + E V + G
Sbjct: 75 DLRSRISIIPQDPVLFSG-TIRSNLDPFGEYSDEELWQAL---ERVGLKEFVESLPGGLD 130
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
G + S G+R+ + +A +L +L+LDE T+ +D + T+
Sbjct: 131 TVVEEGGENL----SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE-A 185
Query: 265 QRGKTIVTSMHQPSSRVYQM--FDKVLVLSEGRCLYFG 300
+ T++T H R+ + D++LVL +GR + F
Sbjct: 186 FKDCTVLTIAH----RLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 2e-16
Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG----LTGTILTNNN 143
I ++ IL IT + I I+GPSGSGKST+L VL RL + + + G +L
Sbjct: 20 INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGK 78
Query: 144 KPTK----HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199
+ + K G V Q +PHL++ + + + L+ +E I E + +
Sbjct: 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRK 136
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD---STAAYRL 256
+GL K + NS +SGG+++R++IA + + P +L++DEPTS +D S A +L
Sbjct: 137 VGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
++ L + IV H P +V ++ D V L G + +G +E
Sbjct: 196 ITEL----KNEIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNE 238
|
Length = 257 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 2e-16
Identities = 54/224 (24%), Positives = 117/224 (52%), Gaps = 16/224 (7%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK---- 144
+ R ++ ++ V+ GEI+ +LGP+G+GK+T ++ G + + G I+ ++
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLL 70
Query: 145 PTKHISKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
P ++R G++ Q+ ++ L+V + L+ ++L++ LS +++ A +M E +
Sbjct: 71 PLHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIE 128
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+++ G S +SGGER+RV IA + NP ++LDEP +G+D + + + L
Sbjct: 129 HLRDSM-GQS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL 183
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
G ++ + H + + ++ ++S+G + G +E +
Sbjct: 184 RDSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 25/157 (15%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH-ISKR-TGFVTQ 158
V GE +AILGPSG+GKST+LN++AG L G++ N T S+R + Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 159 DDILYPHLTVRETLVFCSL-----LRLPRTLSTKEK-TSIAEAVMAELGLTKCENTIIGN 212
++ L+ HLTV + + L L+L + +EK +IA + G+ + G
Sbjct: 79 ENNLFSHLTVAQNI---GLGLNPGLKL--NAAQREKLHAIARQM----GIEDLLARLPGQ 129
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+SGG+R+RV++A ++ +L+LDEP S LD
Sbjct: 130 -----LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-16
Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 28/219 (12%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN---K 144
R ILNGI+ + G+ +AI+G SG+GKST+L +L R + + +G+I +
Sbjct: 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN--SGSITIDGQDIRD 329
Query: 145 PT-KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-- 201
T + + + G V QD +L+ +T+ + ++ R +T E A A A++
Sbjct: 330 VTQQSLRRAIGIVPQDTVLF-----NDTIAY--NIKYGRPDATAE-EVGAAAEAAQIHDF 381
Query: 202 ---LTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
L + +T +G RG +SGGE++RV+IA +L NP +LILDE TS LD+ +
Sbjct: 382 IQSLPEGYDTGVGE---RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAI 438
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ L V G+T + H+ S+ + D+++VL GR
Sbjct: 439 QAAL-REVSAGRTTLVIAHRLSTIIDA--DEIIVLDNGR 474
|
Length = 497 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 6e-16
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 26/205 (12%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGRLHQGHGLTGTILTNN 142
+L ++ V+ GE +A+ GPSG+GKST+L L +GR+ H L
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA-- 77
Query: 143 NKPTKH----ISKRT-GFVTQDDILYPHLTVRETLVFCSLLRL--PRTLSTKEKTSIAEA 195
+ + + ++T G+V+Q + P ++ E +V LL PR + A
Sbjct: 78 -QASPREVLEVRRKTIGYVSQFLRVIPRVSALE-VVAEPLLERGVPREAARAR----ARE 131
Query: 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
++A L + + + +F SGGE++RV+IA + + +L+LDEPT+ LD+
Sbjct: 132 LLARLNIPERLWHLPPATF----SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSR 280
+V + RG ++ H R
Sbjct: 188 VVELIAEAKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-16
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 48/236 (20%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKS-TMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
+ GI+ + GE LA++G SGSGKS T L++L +L +
Sbjct: 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG------------LLPSP--AAA 66
Query: 148 HISKRTGFVTQDDILYPHLTVRE---------TLVF----CSL-------------LRLP 181
H S F +D+L + R+ ++F SL LRL
Sbjct: 67 HPSGSILF-DGEDLL--AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH 123
Query: 182 RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241
R LS + A ++ +G+ + E + +++ +SGG+R+RV IA + P LLI
Sbjct: 124 RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIA 181
Query: 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296
DEPT+ LD T +++ L L G I+ H V + D+V V+ G
Sbjct: 182 DEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQHGEI 236
|
Length = 534 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 7e-16
Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 11/229 (4%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGL-TGTILTNNN 143
+ Q+ +L G+ S + ++G +G GKST+ L+G R +G L G L +
Sbjct: 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK 69
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ + ++ V QD P + T + + R L E I V L L
Sbjct: 70 RGLLALRQQVATVFQD----PEQQIFYTDIDSDIAFSLRNLGVPEA-EITRRVDEALTLV 124
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
++ + I+ +S G++KRV+IA +++ L+LDEPT+GLD ++++ + +
Sbjct: 125 DAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI 182
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
V +G ++ S H +Y++ D V VL +G+ L G E + E++
Sbjct: 183 VAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAM 230
|
Length = 271 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 8e-16
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 24/221 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH----- 148
L GI + GE+ AILG +G+GKST+ L G L +G IL + KP +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDG-KPIDYSRKGL 77
Query: 149 --ISKRTGFVTQD-DILYPHLTVRETLVFCSL-LRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ + G V QD D +V + + F ++ L+LP E + + G+
Sbjct: 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPE----DEVRKRVDNALKRTGIEH 133
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ + +S G++KRV+IA +++ P +L+LDEPT+GLD ++ L +
Sbjct: 134 -----LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQ 188
Query: 265 QR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ G TI+ + H V D V V+ EGR + G E
Sbjct: 189 KELGLTIIIATHDIDI-VPLYCDNVFVMKEGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 9e-16
Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG-----RLHQGH-GLTGTILTNN 142
+ L+ + + GE++A+LGPSGSGKST+L L+G + H L G +
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 143 NKPTKHISK---RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199
+ + I K TG++ Q L L+V E ++ +L P + + + A
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
LT+ + + +SGG+++RV+IA ++ +++ DEP + LD +A ++ T
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 260 LGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
L + Q G T+V ++HQ + ++++ L +G Y G
Sbjct: 195 LRDINQNDGITVVVTLHQ-VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 9e-16
Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 31/207 (14%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRL-HQGHGLT--GTILTNNNKPT--KHISKRTGF 155
+ G+ +A++GPSG+GK+++LN L G L +QG L G L + + KH+S +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGS-LKINGIELRELDPESWRKHLS----W 427
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLP-----RTLSTKEKTSIAEAV-MAELGLTKCENTI 209
V Q+ L PH T+R+ + LL P + E ++E + + GL +T
Sbjct: 428 VGQNPQL-PHGTLRDNV----LLGNPDASDEQLQQALENAWVSEFLPLLPQGL----DTP 478
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
IG+ G+S G+ +R+++A +L LL+LDEPT+ LD+ + ++ L + +R T
Sbjct: 479 IGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTT 537
Query: 270 I-VTSMHQPSSRVYQMFDKVLVLSEGR 295
+ VT HQ + Q D++ V+ +G+
Sbjct: 538 LMVT--HQ-LEDLAQW-DQIWVMQDGQ 560
|
Length = 588 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-15
Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 27/229 (11%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGR-LHQGHGLTGTILTN 141
+R L+ I+ ++ PGE +A++G SGSGKST++N++ +G+ L GH L L +
Sbjct: 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL- 200
+ ++ V+QD +L+ T+ + + E A A+
Sbjct: 404 LRR---QVA----LVSQDVVLFND-TIANNIAYGR----TEQADRAEIERALAAAYAQDF 451
Query: 201 --GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
L +T IG + + +SGG+R+R++IA +L + +LILDE TS LD + RLV
Sbjct: 452 VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALD-NESERLVQ 509
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ +G+T + H+ S+ + D+++V+ +GR + G +E ++
Sbjct: 510 AALERLMQGRTTLVIAHRLST--IEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 68/188 (36%), Positives = 96/188 (51%), Gaps = 22/188 (11%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTM-LNVLAGRLHQGHG---LTGTILTNNNK- 144
++ I+ + PGE L ++G SGSGKST L +L RL G G L N N+
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL--RLINSQGEIWFDGQPLHNLNRR 355
Query: 145 ---PTKHISKRTGFVTQD--DILYPHLTVRETLVFCSLLRL-PRTLSTKEKTSIAEAVMA 198
P +H R V QD L P L V + + LR+ TLS ++ AVM
Sbjct: 356 QLLPVRH---RIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVME 410
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
E+GL F SGG+R+R++IA +++ PSL+ILDEPTS LD T ++++
Sbjct: 411 EVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA 466
Query: 259 TLGSLVQR 266
L SL Q+
Sbjct: 467 LLKSLQQK 474
|
Length = 529 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 36/217 (16%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN-----KPTK 147
+L GI + GE+ A+LG +G+GKST++ ++AG + +GT+ N P K
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAK 82
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
V Q+ +L+P+L+V+E ++F LP+ ++ +K + ++A LG
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQKM---KQLLAALGC----- 130
Query: 208 TIIGNSFIRGISGG-----ERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
S G +R+ V I ++ + +LILDEPT+ L RL S +
Sbjct: 131 -----QLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE 185
Query: 263 LVQRGKTIVTSMH------QPSSRVYQMFDKVLVLSE 293
L+ +G IV H Q + R+ M D + LS
Sbjct: 186 LLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
|
Length = 510 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 30/250 (12%)
Query: 55 IKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSG 114
I++EN SK +++ S G ++ E L ++ V GE + ++G +G
Sbjct: 1 IELENVSKSYPTYKG--GSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNG 58
Query: 115 SGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVF 174
+GKST+L +LAG GT+ + + + GF P LT RE +
Sbjct: 59 AGKSTLLRLLAGIYPPDS---GTVTV-RGRVSSLLGLGGGFN-------PELTGRENIYL 107
Query: 175 -CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSF---IRGISGGERKRVSIAH 230
LL L R ++ I E +EL G+ ++ S G + R++ A
Sbjct: 108 NGRLLGLSRKEIDEKIDEIIE--FSEL----------GDFIDLPVKTYSSGMKARLAFAI 155
Query: 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290
+ P +L++DE + D+ + L L+++GKT++ H PSS + ++ D+ LV
Sbjct: 156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALV 214
Query: 291 LSEGRCLYFG 300
L +G+ + G
Sbjct: 215 LEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 1e-15
Identities = 64/224 (28%), Positives = 115/224 (51%), Gaps = 22/224 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--- 146
+ +L G+T + PGE++A++GPSGSGKST+ +L L+Q TG + + P
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ-NLYQP---TGGQVLLDGVPLVQY 548
Query: 147 --KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
++ ++ V Q+ +L+ +VRE + + L P +E + A+A A + +
Sbjct: 549 DHHYLHRQVALVGQEPVLFSG-SVRENIAY-GLTDTPD----EEIMAAAKAANAHDFIME 602
Query: 205 CENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
N +G +SGG+++R++IA ++ P +LILDE TS LD +L+ S
Sbjct: 603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD-AECEQLLQESRS 661
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306
+ +T++ H+ S + D++LVL +G + G + M
Sbjct: 662 --RASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLM 701
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 2e-15
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 27/231 (11%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160
GE+L +LGP+G+GK+T+L + G + GT+ + G+V Q
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAG-ASPGKGWRHIGYVPQRH 58
Query: 161 IL---YPHLTVRETLV-----FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
+P ++V T++ LR P + + +GLT+ + +G
Sbjct: 59 EFAWDFP-ISVAHTVMSGRTGHIGWLRRPC----VADFAAVRDALRRVGLTELADRPVGE 113
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVT 272
+SGG+R+RV +A + PS+L+LDEP +GLD L L G I+
Sbjct: 114 -----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 273 SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE---AMSYFESVGFSPSFPM 320
+ H + + D+V++L+ GR + G + + + G S S P+
Sbjct: 169 TTHDLAQAMATC-DRVVLLN-GRVIADGTPQQLQDPAPWMTTFGVSDSSPL 217
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 29/220 (13%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTIL------TN 141
E+ L I + ++ A++GPSG GKST+L L L G + G +L +
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ +R G V Q +P +++ + + + PR K+K + E V E
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG-----PRLHGIKDKKELDEIV--EES 124
Query: 202 LTKC------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
L K ++ + ++ G+SGG+++R+ IA + + P +L+LDEPTS LD A +
Sbjct: 125 LKKAALWDEVKDRLHDSAL--GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGK 182
Query: 256 LVSTLGSLVQRGK-TIVT-SMHQP---SSRVYQMFDKVLV 290
+ + L ++ IVT +M Q S R +D LV
Sbjct: 183 IEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV 222
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 36/235 (15%)
Query: 54 RIKIENKSKEGSSFRRIF-NRGSTSSTD-DQGST-AKIQERTI----LNGITGMVSPGEI 106
+I+I+N K IF + DQG + A+I ++T +N + V GEI
Sbjct: 4 KIEIKNVYK-------IFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEI 56
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS---------KRTGFVT 157
I+G SGSGKST++ +L + G IL + K +S K+ V
Sbjct: 57 FVIMGLSGSGKSTLVRLLNRLIEPTRG---EILVDGKDIAK-LSAAELRELRRKKISMVF 112
Query: 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217
Q L PH TV E + F L + + + E+ A + +GL + +
Sbjct: 113 QSFALLPHRTVLENVAFG--LEV-QGVPKAEREERALEALELVGLEGYAD-----KYPNE 164
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIV 271
+SGG ++RV +A + +P +L++DE S LD + L L + KTIV
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIV 219
|
Length = 386 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 26/215 (12%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL---TNNNKPT- 146
R + ++ PG+ +AI+GP+G+GKST++N+L R+ +G IL T+ T
Sbjct: 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ-RVFDPQ--SGRILIDGTDIRTVTR 404
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEK----TSIAEAVMAELGL 202
+ + V QD L+ ++ + + R+ R +T E+ A+A
Sbjct: 405 ASLRRNIAVVFQDAGLFNR-SIEDNI------RVGRPDATDEEMRAAAERAQAHDFIERK 457
Query: 203 TKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+T++G RG +SGGER+R++IA +L +P +LILDE TS LD ++ + L
Sbjct: 458 PDGYDTVVGE---RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL 514
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ +G+T H+ S+ + D++LV GR
Sbjct: 515 DE-LMKGRTTFIIAHRLST--VRNADRILVFDNGR 546
|
Length = 588 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 6e-15
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 36/260 (13%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160
+ GEI+ LG +G+GKST L +L G L G + N P +R ++
Sbjct: 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG---KVRVNGKDP---FRRREEYL--RS 98
Query: 161 ILYPHLTVRETLVFCSLLRLPRTLST-KEKTSIAEAVMAE--------LGLTKCENTIIG 211
I + + L + L +L K I + AE L L +
Sbjct: 99 IGLV-MGQKLQLWWD--LPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPV- 154
Query: 212 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTI 270
R +S G+R R +A +L P +L LDEPT GLD A + L + R T+
Sbjct: 155 ----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATV 210
Query: 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE-AMSYFESVGFSPSFPMNPADFLLDL 329
+ + H + + D+VL++ +G+ ++ G ++ + FS +
Sbjct: 211 LLTTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS-------VELKQAK 262
Query: 330 ANGVYHLDG-VSEREKPNVK 348
+ L G V+ E N+K
Sbjct: 263 SLSQLALLGDVTIEEGLNIK 282
|
Length = 325 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (184), Expect = 6e-15
Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 13/224 (5%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGRLHQGHGLTGTILTNNN 143
+T+L+ ++ + +++GP+GSGK+T L L +G + G L G N
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ +R G + Q +P + L + +R + + KE +A+A + E+GL
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGVAQARLTEVGLW 150
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ +S R +SGG+++ + +A + +NP +L+LDEPTS LD T ++ + SL
Sbjct: 151 DAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
R I+ + + ++ ++ D+ + +GR + G + S
Sbjct: 210 ADRLTVIIVTHNL--AQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
Length = 276 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 6e-15
Identities = 59/213 (27%), Positives = 113/213 (53%), Gaps = 20/213 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--- 146
+ +L ++ + PGE+ A++GPSGSGKST++ +L +Q G G +L + KP
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE-NFYQPQG--GQVLLDG-KPISQY 81
Query: 147 --KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
K++ + V Q+ +L+ ++++ + + L + S + A+ A +++
Sbjct: 82 EHKYLHSKVSLVGQEPVLFAR-SLQDNIAY----GLQ-SCSFECVKEAAQKAHAHSFISE 135
Query: 205 CENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ +G +SGG+++RV+IA ++ NP +LILDE TS LD+ + ++ L
Sbjct: 136 LASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+R +V + H+ S+ + D++LVL GR
Sbjct: 196 WPERRTVLVIA-HRLST--VERADQILVLDGGR 225
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 7e-15
Identities = 59/234 (25%), Positives = 103/234 (44%), Gaps = 36/234 (15%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---------------- 133
E LN I+ +I I+G SGSGKST++ G + +G
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 134 -LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTL--STKEKT 190
L + K K + +R V Q +P + + + ++ P L E
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQ----FPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 191 SIAEAVMAELGLTKCENTIIGNSFIR----GISGGERKRVSIAHEMLINPSLLILDEPTS 246
+A+ + ++GL +S++ G+SGG+++RV+IA + I P +LI DEPT+
Sbjct: 154 KLAKFYLNKMGL--------DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTA 205
Query: 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
GLD + ++ + KT+ H V ++ D+V+V+ +G+ L G
Sbjct: 206 GLDPKGEHEMMQLILDAKANNKTVFVITHT-MEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 8e-15
Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 27/168 (16%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-- 150
IL I+ G I I+GPSG+GKST++ ++ + G +IL + K I
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG---SILIDGVD-IKTIDVI 73
Query: 151 ---KRTGFVTQDDILYPHL---TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
++ G V Q PHL TV++ + + +L+ EK E ++ +GL K
Sbjct: 74 DLRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLK-------GEKNVDVEYYLSIVGLNK 122
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
T ++ +SGGE +RVSIA + NP +L+LDEPTS LD T+
Sbjct: 123 EYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
|
Length = 241 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 8e-15
Identities = 65/213 (30%), Positives = 105/213 (49%), Gaps = 25/213 (11%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT----GTILTNNNKPTKH 148
+L GI+ + GE++AI+G SGSGKST++N+L G L + T G + +
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVAGQDVATLDADALA 81
Query: 149 ISKRT--GFVTQDDILYPHLTVRETLVFCSLLRLPRT---LSTKEKTSIAEAVMAELGLT 203
+R GF+ Q L HLT + + +P L K++ A+ ++ LGL
Sbjct: 82 QLRREHFGFIFQRYHLLSHLTAAQNV------EVPAVYAGLERKQRLLRAQELLQRLGLE 135
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL-DEPTSGLDSTAAYRLVSTLGS 262
+SGG+++RVSIA L+N +IL DEPT LDS + +++ L
Sbjct: 136 DRVEYQPSQ-----LSGGQQQRVSIA-RALMNGGQVILADEPTGALDSHSGEEVMAILHQ 189
Query: 263 LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L RG T++ H P +V ++V+ + +G
Sbjct: 190 LRDRGHTVIIVTHDP--QVAAQAERVIEIRDGE 220
|
Length = 648 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 8e-15
Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 60/224 (26%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
L I V GE++AI+GP GSGKS++L+ L G L + L+G++ +
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK---LSGSV---------SVPGS 67
Query: 153 TGFVTQDDILYPHL---TVRETLVF---------------CSLLRLPRTLSTKEKTSIAE 194
+V+Q P + T+RE ++F C+L +
Sbjct: 68 IAYVSQ----EPWIQNGTIRENILFGKPFDEERYEKVIKACALEP-----------DLEI 112
Query: 195 AVMAELGLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDS-T 251
L + T IG +GI SGG+++R+S+A + + + +LD+P S +D+
Sbjct: 113 -------LPDGDLTEIG---EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
Query: 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ + + L+ KT + HQ + D+++VL GR
Sbjct: 163 GRHIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 8e-15
Identities = 55/201 (27%), Positives = 97/201 (48%), Gaps = 20/201 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGRLH-QGHGLT------ 135
E +L G++ + G++++I+G SGSGKST L + G + G +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 136 GTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA 195
G + + + + R V Q L+ H+TV E ++ + L LS +E A
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVK 134
Query: 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
+A++G+ + + +SGG+++RVSIA + + P +L+ DEPTS LD
Sbjct: 135 YLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 256 LVSTLGSLVQRGKTIVTSMHQ 276
++ + L + GKT+V H+
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 65/282 (23%), Positives = 119/282 (42%), Gaps = 57/282 (20%)
Query: 54 RIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPS 113
+IK++N K IFN+ + E L+ ++ ++ GE +AI+G +
Sbjct: 2 QIKVKNIVK-------IFNKKLPT------------ELKALDNVSVEINQGEFIAIIGQT 42
Query: 114 GSGKSTMLNVLAGRLHQGHGLTGTILTN-NNKPTKHISKRTGFVTQDDILYPHLTVRETL 172
GSGK+T + L L TGTI ++ K +K V + ++ T + +
Sbjct: 43 GSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQK--TRFKKI 97
Query: 173 VFCSLLRLPRTL-------------STKEKTSIAEAVMAELGLTKCENTIIGNSFIR--- 216
+R R + T EK I V +G++K E +I
Sbjct: 98 KKIKEIR--RRVGVVFQFAEYQLFEQTIEKDIIFGPV--SMGVSKEEAKKRAAKYIELVG 153
Query: 217 -----------GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+SGG+++RV++A + + P L+ DEPT+GLD ++ +L +
Sbjct: 154 LDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK 213
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+GKTI+ H + V + + + +G+ + G + +S
Sbjct: 214 QGKTIILVTHDLDN-VLEWTKRTIFFKDGKIIKDGDTYDILS 254
|
Length = 305 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 9e-15
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 15/215 (6%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL---HQGHGLTGTILTNNNKPTK 147
+ +N + ++ GE L ++GPSGSGK+T + ++ RL G P +
Sbjct: 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI-NRLIEPTSGEIFIDGEDIREQDPVE 72
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFC-SLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+ ++ G+V Q L+PH+TV E + LL+ P+ K + E L L +
Sbjct: 73 -LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE---KIRERADEL----LALVGLD 124
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ + +SGG+++RV +A + +P LL++DEP LD +L L Q
Sbjct: 125 PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE 184
Query: 267 -GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
GKTIV H ++ D++ ++ G + G
Sbjct: 185 LGKTIVFVTHDIDEAF-RLADRIAIMKNGEIVQVG 218
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-14
Identities = 68/222 (30%), Positives = 110/222 (49%), Gaps = 37/222 (16%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
Q + +L G++ + GE +A+LG +G GKST+L +L R G IL N +P
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQ--QGEILLNG-QPIAD 406
Query: 149 ISKRT-----GFVTQDDILYPHL---TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
S+ V+Q HL T+R+ L LL P ++ E V+ ++
Sbjct: 407 YSEAALRQAISVVSQR----VHLFSATLRDNL----LLAAPN--ASDEALI---EVLQQV 453
Query: 201 GLTKCENTIIG-NSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
GL K G N+++ R +SGGE++R+ IA +L + LL+LDEPT GLD+ +
Sbjct: 454 GLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ 513
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQM--FDKVLVLSEGR 295
++ L Q KT++ H R+ + FD++ V+ G+
Sbjct: 514 ILELLAEHAQ-NKTVLMITH----RLTGLEQFDRICVMDNGQ 550
|
Length = 574 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 1e-14
Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTILTNNNK-- 144
++ + + V G + A++GPSG GK+T L + R+H G +TG IL +
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAI-NRMHDLTPGARVTGRILLDGQDIY 74
Query: 145 -----PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199
P + +R G V Q +P ++V + +V + L+L +AE +
Sbjct: 75 GPRVDPVA-MRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRG 131
Query: 200 LGL-TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
L + ++ + + G+SGG+++R+ IA + + P +L++DEPTS LD + R+
Sbjct: 132 AALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 259 TLGSLVQRGKTIVTS--MHQPSSRV 281
+ L + I+ + MHQ ++RV
Sbjct: 190 LMTDLKKVTTIIIVTHNMHQ-AARV 213
|
Length = 252 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 22/225 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH---QGHGLTGTILTNNNKPT 146
++ L+G+ V PGE +A++GPSG+GKST+ +L R + G L + P
Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQSGRILLDGVDLRQLDP- 409
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE-----LG 201
+ R V QD +L+ +V E +R R +T E+ A A A
Sbjct: 410 AELRARMALVPQDPVLFAA-SVMEN------IRYGRPDATDEEVEAA-ARAAHAHEFISA 461
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L + +T +G + +SGG+R+R++IA +L + +L+LDE TS LD+ + + L
Sbjct: 462 LPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520
Query: 262 SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306
+L++ G+T + H+ ++ D+++V+ +GR + G +E +
Sbjct: 521 TLMK-GRTTLIIAHRLAT--VLKADRIVVMDQGRIVAQGTHAELI 562
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 20/224 (8%)
Query: 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTI 138
G + K Q +T+LN ++ + GE +A+LG SG GKST+ +L G G G
Sbjct: 16 GGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEP 75
Query: 139 LTNNNKPTKHISKRT-GFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA 195
L N+ + +R V QD I + P TVRE + LR +L E+ + A
Sbjct: 76 LAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR--EPLRHLLSLDKAERLARASE 133
Query: 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
++ + L + + +SGG+ +RV +A + + P LLILDE S LD
Sbjct: 134 MLRAVDLDDS----VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189
Query: 256 LVSTLGSLVQRGKT---IVTSMHQPSSRVYQMF-DKVLVLSEGR 295
++ L L Q+ T +T H R+ + F +V+V+ G+
Sbjct: 190 VIRLLKKLQQQFGTACLFIT--H--DLRLVERFCQRVMVMDNGQ 229
|
Length = 268 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 78/260 (30%), Positives = 117/260 (45%), Gaps = 26/260 (10%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN----NKPTK 147
T +N + + GE L I+G SGSGKS L G L + G+ N N P K
Sbjct: 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89
Query: 148 HISK----RTGFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
++K + + QD + L P++ V E L+ +L L + +S E + E+V
Sbjct: 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM--EVLMLHKGMSKAE--AFEESVRMLDA 145
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
+ E + SGG R+RV IA +L P LLI DEPT+ LD T ++++ L
Sbjct: 146 VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLN 205
Query: 262 SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMN 321
L + T + + V + DKVLV+ GR + +G + V + PS P
Sbjct: 206 ELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD-------VFYQPSHP-- 256
Query: 322 PADFLLDLANGVYHLDGVSE 341
+ + L N V LD E
Sbjct: 257 ---YSIGLLNAVPRLDAEGE 273
|
Length = 330 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-14
Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 20/226 (8%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTILTNNN--- 143
E+ + +T + +I AI+GPSG GK+T+L + R++ G + G I
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQDIY 73
Query: 144 KPTKHIS---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
P ++ K+ G V Q +P +++ + + F PR K K + V L
Sbjct: 74 DPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG-----PRIHGVKSKHKLDRIVEESL 127
Query: 201 GLTKCENTIIG--NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
+ + N +SGG+++R+ IA + + P +++LDEPTS LD A R+
Sbjct: 128 KKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
L L + TIV H + ++ D + + G + +G E
Sbjct: 188 LLEELSEN-YTIVIVTHNIGQAI-RIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-14
Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHIS 150
L G++ + G A+LGP+G+GKST+L L G G + G + N+ K +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE--KWVR 78
Query: 151 KRTGFVTQD--DILYPHLTVRETLVFCSLLRLPRT--LSTKEKTSIAEAVMAELGLTKCE 206
+ G V QD D ++ TV + + F P L E E + + +
Sbjct: 79 SKVGLVFQDPDDQVFS-STVWDDVAFG-----PVNMGLDKDEVERRVEEALKAVRMWDFR 132
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ + +S G++KRV+IA + ++P +++LDEP + LD L+ L L +
Sbjct: 133 DKPPYH-----LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
GKT++ + H + D+V+VL EGR L G
Sbjct: 188 GKTVIVATHD-VDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 13/217 (5%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
++++ IL G+ V PGE+ AI+GP+GSGKST+ LAGR + + +TG + K
Sbjct: 11 VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLL 68
Query: 148 HIS--KRTG---FVT-QDDILYPHLTVR---ETLVFCSLLRLPRTLSTKEKTSIAEAVMA 198
+S R G F+ Q + P ++ + +T + + +R R ++ + +
Sbjct: 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL--NAVRSYRGQEPLDRFDFQDLMEE 126
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
++ L K ++ S G SGGE+KR I ++ P L ILDE SGLD A +
Sbjct: 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVAD 186
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ SL ++ + H Y D V VL +GR
Sbjct: 187 GVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGR 223
|
Length = 248 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-14
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 30/219 (13%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
E ++ + + PG+ +A++G SGSGKST+ ++AG L+Q +G IL + P +
Sbjct: 489 PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG-LYQP--WSGEILFDG-IPRE 544
Query: 148 HISKRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE------KTSIAEAV 196
I + V QD L+ TVR+ L T+ + +I + +
Sbjct: 545 EIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD-----PTIPDADLVRACKDAAIHDVI 598
Query: 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+ G E G + SGG+R+R+ IA ++ NPS+LILDE TS LD +
Sbjct: 599 TSRPGGYDAELAEGGANL----SGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+L +RG T + H+ S+ + D+++VL G+
Sbjct: 655 DD---NLRRRGCTCIIVAHRLST--IRDCDEIIVLERGK 688
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 78/232 (33%), Positives = 111/232 (47%), Gaps = 34/232 (14%)
Query: 104 GEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISKR-TGFVTQDD 160
GE + +GPSG GKST+L ++AG + G G N+ P ++R G V Q
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP----AERGVGMVFQSY 84
Query: 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV--MAE-LGLTKCENTIIGNSFIRG 217
LYPHL+V E + F L+L +K I + V +AE L L + + +
Sbjct: 85 ALYPHLSVAENMSFG--LKLAGA----KKEEINQRVNQVAEVLQLAH-----LLDRKPKA 133
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL-----VSTLGSLVQRGKTIVT 272
+SGG+R+RV+I ++ PS+ +LDEP S LD AA R+ +S L + R VT
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD--AALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 273 SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES---VGFSPSFPMN 321
H + DK++VL GR GK E Y + GF S MN
Sbjct: 192 --HD-QVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGSPKMN 240
|
Length = 369 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-14
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 34/219 (15%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150
IL+ I+ + I+G SGSGKST+ +L G G IL N K I
Sbjct: 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG---EILLNG-FSLKDID 542
Query: 151 KRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTS---IAEAV-MAELG 201
+ T ++ Q+ ++ ++ E L+ L KE S I A +AE+
Sbjct: 543 RHTLRQFINYLPQEPYIFSG-SILENLL----------LGAKENVSQDEIWAACEIAEIK 591
Query: 202 LTKCENTIIG-----NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
EN +G + ISGG+++R+++A +L + +LILDE TS LD+ ++
Sbjct: 592 -DDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
V+ L +L KTI+ H+ S V + DK++VL G+
Sbjct: 651 VNNLLNLQD--KTIIFVAHRLS--VAKQSDKIIVLDHGK 685
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 18/201 (8%)
Query: 104 GEILAILGPSGSGKST----MLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFV 156
GE+LA++G SGSGKS +L +L L Q G L G L P + +
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL----PLSIRGRHIATI 67
Query: 157 TQD--DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSF 214
Q+ P T+ + LR LS + + I EA + +GL E + +
Sbjct: 68 MQNPRTAFNPLFTMGNHAI--ETLRSLGKLSKQARALILEA-LEAVGLPDPEE--VLKKY 122
Query: 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGG +RV IA +L+ P LI DEPT+ LD R++ L L Q T + +
Sbjct: 123 PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI 182
Query: 275 HQPSSRVYQMFDKVLVLSEGR 295
V ++ D+V V+ +GR
Sbjct: 183 THDLGVVARIADEVAVMDDGR 203
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-14
Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 18/221 (8%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH---QGHGLTGTILTNNNKPTKHI 149
+L+ + + PGE + I+GPSGSGKST L L RL+ G L + P +
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKST-LTKLLQRLYTPQHGQVLVDGVDLAIADPAW-L 529
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---LGLTKCE 206
++ G V Q+++L+ ++R+ + C+ P + A+ A L +
Sbjct: 530 RRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISELPQGY 583
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
NT +G +SGG+R+R++IA ++ NP +LI DE TS LD + ++ + + R
Sbjct: 584 NTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE-ICR 641
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
G+T++ H+ S+ + D+++VL +G+ G+ E ++
Sbjct: 642 GRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 3e-14
Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 20/214 (9%)
Query: 105 EILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNN------NKPTKHISKRTGFV 156
+I AI+GPSG GKST+L L + G L G +L +N N ++ KR G V
Sbjct: 31 QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMV 90
Query: 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIR 216
Q +P ++ + + F PR L T ++ + E V L + + N
Sbjct: 91 FQQPNPFPK-SIFDNVAFG-----PRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKS 144
Query: 217 G--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK-TIVTS 273
G +SGG+++R+ IA + I P ++++DEP S LD + R+ + L Q IVT
Sbjct: 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTH 204
Query: 274 MHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
Q ++R D L G + +G+ E S
Sbjct: 205 NMQQAARAS---DWTGFLLTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 3e-14
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 24/200 (12%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNNN------KP 145
L GI + EI A++GPSG GKST L L L G +TG + +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP-----RTLSTKEKTSIAEAVMAEL 200
+ K+ G V Q +P ++ E +++ LRL L +TS+ +A + +
Sbjct: 81 VVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+ + +SGG+++RV IA + + P +++LDEPTS LD ++ ++ + L
Sbjct: 138 VKDHLHESALS------LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML 191
Query: 261 GSLVQRGKTIVT--SMHQPS 278
L + I+ SMHQ S
Sbjct: 192 LELRDQYTIILVTHSMHQAS 211
|
Length = 252 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 4e-14
Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 31/232 (13%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
+ E T L ++G V GEIL ++GP+G+GKST+L +AG +G+I +P +
Sbjct: 9 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAG-QPLE 63
Query: 148 H-----ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+++ +++Q + V L L P K +T + V L L
Sbjct: 64 AWSATELARHRAYLSQQQTPPFAMPVWHYLT----LHQP----DKTRTELLNDVAGALAL 115
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEML-----INPS--LLILDEPTSGLDSTAAYR 255
+G S +SGGE +RV +A +L NP+ LL+LDEP + LD
Sbjct: 116 DD----KLGRS-TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA 170
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L L +L Q+G IV S H + + + +L G+ L G+ E ++
Sbjct: 171 LDRLLSALCQQGLAIVMSSHD-LNHTLRHAHRAWLLKRGKLLASGRREEVLT 221
|
Length = 248 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTIL 139
+ + ERT+LN + + G+ +A++G SG GKST+L +LAG G L G
Sbjct: 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG--- 72
Query: 140 TNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199
P + T + QD L P V + + L + + + A +A
Sbjct: 73 ---TAPLAEAREDTRLMFQDARLLPWKKVIDNVGL--------GLKGQWRDA-ALQALAA 120
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
+GL N + +SGG+++RV++A ++ P LL+LDEP LD+ +
Sbjct: 121 VGLAD-----RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDL 175
Query: 260 LGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ SL Q+ G T++ H S V M D+VL++ EG+
Sbjct: 176 IESLWQQHGFTVLLVTHDVSEAV-AMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-14
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 12/215 (5%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGH-GLTGTILTNNN 143
Q +L ++ + GE + +LG SG GKST+ +L G + QG G L +
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79
Query: 144 KPTKHISKRT-GFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ + +R V QD + P +TVR+ + LR +L E+ + ++ +
Sbjct: 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG--EPLRHLTSLDESEQKARIAELLDMV 137
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL + + R +SGG+ +R++IA + + P L++LDE S LD ++ L
Sbjct: 138 GL----RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELL 193
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L Q T + V +V V+ +G+
Sbjct: 194 RKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ 228
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 38/242 (15%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKST---MLNVL----AGRLHQGHGLTGTILTNNNKP- 145
+N ++ GEI I+G SGSGKST MLN L AG++ + G + +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF----IDGENIMKQSPVE 64
Query: 146 -TKHISKRTGFVTQDDILYPHLTVRETLVFC-SLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ K+ G V Q L+PH+T+ + LL P +E+ A ++ +GL
Sbjct: 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPE----QERKEKALELLKLVGLE 120
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ E+ + +SGG ++RV +A + P +L++DE S LD + L L
Sbjct: 121 EYEH-----RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175
Query: 264 VQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNP 322
KTIV H + ++ D+++++ G + G E + NP
Sbjct: 176 QATLQKTIVFITHDLDEAI-RIGDRIVIMKAGEIVQVGTPDEIL-------------RNP 221
Query: 323 AD 324
A+
Sbjct: 222 AN 223
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 19/206 (9%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVTQDD 160
GEI A+LG SG GKST+L +LAG G L G L++ + I+ + Q
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN----MMFQSY 100
Query: 161 ILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGIS 219
L+PH+TV + + F +LP K IA V LGL + +S
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLP-------KAEIASRVNEMLGLVHMQE--FAKRKPHQLS 151
Query: 220 GGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPS 278
GG+R+RV++A + P LL+LDEP LD R+ + +++R G T V H
Sbjct: 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD-Q 210
Query: 279 SRVYQMFDKVLVLSEGRCLYFGKGSE 304
M ++ +++ G+ + G+ E
Sbjct: 211 EEAMTMAGRIAIMNRGKFVQIGEPEE 236
|
Length = 377 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-14
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 28/216 (12%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG----LTGTILTNNNKPTKHI 149
++GI+ + G+ L ++G SGSGKST+ L RL G I + K + +
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALL-RLIPSQGEIRFDGQDIDGLSRKEMRPL 361
Query: 150 SKRTGFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
+R V QD L P +TV + ++ L LS E+ + E+GL
Sbjct: 362 RRRMQVVFQDPYGSLSPRMTVGQ-IIEEGLRVHEPKLSAAERDQRVIEALEEVGLD--PA 418
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
T N + SGG+R+R++IA +++ P L++LDEPTS LD + +++ L L Q+
Sbjct: 419 TR--NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK- 475
Query: 268 KTIVTSMHQPS--------SRVYQMFDKVLVLSEGR 295
H S + V + +V+V+ +G+
Sbjct: 476 -------HGLSYLFISHDLAVVRALCHRVIVMRDGK 504
|
Length = 534 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 6e-14
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 40/219 (18%)
Query: 106 ILAILGPSGSGKSTMLNVLAG--RLHQGH-GLTGTILTNNNK-----PTKHISKRTGFVT 157
I AI G SG+GK++++N ++G R +G L G +L + K P K +R G+V
Sbjct: 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK---RRIGYVF 82
Query: 158 QDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIR 216
QD L+PH VR L + + K + + ++A LG+ + + +
Sbjct: 83 QDARLFPHYKVRGNLRYGMA----------KSMVAQFDKIVALLGIEP-----LLDRYPG 127
Query: 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT---IVT- 272
+SGGE++RV+I +L P LL++DEP + LD L+ L L + V+
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH 187
Query: 273 SMHQPSSRVYQMFDKVLVLSEGRCLYFGK-----GSEAM 306
S+ + + ++ D+V+VL +G+ FG S AM
Sbjct: 188 SLDE----ILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222
|
Length = 352 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 7e-14
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 34/226 (15%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKH 148
IL G++ V GE+ +LG +G GK+T+L L G L G L G +T P +
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDIT-KLPPHER 72
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA---------VMAE 199
+V Q ++P LTV E L L L L + + E ++
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENL----LTGLA-ALPRRSRKIPDEIYELFPVLKEMLGR 127
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
G G+ +SGG++++++IA ++ P LL+LDEPT G+ + +
Sbjct: 128 RG---------GD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173
Query: 260 LGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ L + G I+ Q ++ D+ V+ GR + G G E
Sbjct: 174 IRRLRAEGGMAILLV-EQYLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 8e-14
Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 16/204 (7%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI--------LTNNNKPTKHISKRT- 153
PGE+L I+G SGSGKST+L LAGRL HG I L ++ + RT
Sbjct: 28 PGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87
Query: 154 -GFVTQDDILYPHLTVRETL-VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG 211
GFV Q+ P +R + ++ + + +I L + + T I
Sbjct: 88 WGFVHQN----PRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRI- 142
Query: 212 NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
+ R SGG ++R+ IA ++ P L+ +DEPT GLD + RL+ L LV+ V
Sbjct: 143 DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAV 202
Query: 272 TSMHQPSSRVYQMFDKVLVLSEGR 295
+ + ++LV+ +GR
Sbjct: 203 IIVTHDLGVARLLAQRLLVMQQGR 226
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 1e-13
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 16/179 (8%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTG-TILTNNNKPTKHISKRTGFV 156
V PGE +LG +G+GK+T +L G G + G +ILTN + + G+
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN----ISDVHQNMGYC 2017
Query: 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIR 216
Q D + LT RE L + LR + +E +A + LGL+ + + G
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT---- 2070
Query: 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
SGG ++++S A ++ P L++LDEPT+G+D A L +T+ S+++ G+ +V + H
Sbjct: 2071 -YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 43/163 (26%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
K + ++G++ + GE L ++G SG GKST+ ++ G +PT
Sbjct: 22 KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE---------------EPT 66
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
G +IL+ + + LS +E+ ++ ++GL E
Sbjct: 67 S------G-----EILFEGKDITK-------------LSKEERRERVLELLEKVGLP--E 100
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ + +SGG+R+R+ IA + +NP L++ DEP S LD
Sbjct: 101 EFL--YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141
|
Length = 268 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 1e-13
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 52/203 (25%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-----NKPTKHISKRTGF 155
V GEI+ I G G+G++ + L G +G I + P I +
Sbjct: 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVTRRSPRDAIRAGIAY 79
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFI 215
V +D R E ++ +L + EN + +
Sbjct: 80 VPED-------------------RK------------REGLVLDLSVA--ENIALSSLL- 105
Query: 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
SGG +++V +A + +P +LILDEPT G+D A + + L GK ++
Sbjct: 106 ---SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI-- 160
Query: 276 QPSS---RVYQMFDKVLVLSEGR 295
SS + + D++LV+ EGR
Sbjct: 161 --SSELDELLGLCDRILVMYEGR 181
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 43/234 (18%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTIL---TNNN 143
++ L I + ++ A++GPSG GKST+L L R++ G + G +L N
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDGKNIY 77
Query: 144 KPTKHIS---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTK---------EKTS 191
P + +R G V Q +P +++ + + + LRL + +K +
Sbjct: 78 DPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYG--LRLHGIKDKELDEIVESSLKKAA 134
Query: 192 IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251
+ + V L + G+SGG+++R+ IA + + P +L++DEPTS LD
Sbjct: 135 LWDEVKDRL-----------HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPI 183
Query: 252 AAYRLVSTLGSLVQRGK---TIVT-SMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301
+ ++ + L + K IVT +M Q ++RV D G + FG
Sbjct: 184 STLKIEELITEL--KKKYTIVIVTHNMQQ-AARVS---DYTAFFYLGELVEFGP 231
|
Length = 253 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-13
Identities = 59/209 (28%), Positives = 98/209 (46%), Gaps = 16/209 (7%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNN--NKPTKH 148
L+ I+ + G +A++G +GSGKST++ L G + G +T NK K
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV--MAELGLTKCE 206
+ K+ V Q +P + E V + P+ E + +A+ + ++GL+ E
Sbjct: 83 LRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLS--E 136
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ I + F +SGG+ +RV+IA M P +L LDEP +GLD ++ +
Sbjct: 137 DLISKSPF--ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA 194
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
G T++ H V + D VLVL G+
Sbjct: 195 GHTVILVTHNMDD-VAEYADDVLVLEHGK 222
|
Length = 287 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 28/235 (11%)
Query: 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTG-- 136
+ S A + R L G+T + PGE+ + G SG+GKST+L ++ G R G
Sbjct: 5 EHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH 64
Query: 137 TILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV 196
I N+ + ++ G + QD L TV + + +P ++ I V
Sbjct: 65 DITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVA------IPLIIAGASGDDIRRRV 118
Query: 197 MAELG----LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
A L L K +N I +SGGE++RV IA ++ P++L+ DEPT LD
Sbjct: 119 SAALDKVGLLDKAKNFPIQ------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 253 AYRLVSTLGSLVQRGKTIVTSMHQP---SSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ ++ + G T++ + H S R Y ++L LS+G L+ G G E
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSY----RMLTLSDGH-LHGGVGGE 222
|
Length = 222 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISK 151
LN ++ V PGE+ ++GP+G+GK+T+++V+ G R +G L P I++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 152 R-TGFVTQDDILYPHLTVRETL---------VFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
G Q ++ +LTVRE L VF SL R L +E+ I E ++A +G
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASL--FAR-LRAEERRRIDE-LLATIG 136
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L + + +S G+++ + I + +P LL+LDEP +G+ + L
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK 191
Query: 262 SLVQRGKTIVTS--MHQPSSRVYQMFDKVLVLSEGRCL 297
SL + +V M V ++ DKV VL EG L
Sbjct: 192 SLAGKHSILVVEHDMG----FVREIADKVTVLHEGSVL 225
|
Length = 249 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-13
Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 26/225 (11%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKS-TMLNVLAGRL--------HQGHGL-TGTI 138
RT++N ++ + GE LA++G SGSGKS T L++L RL G G
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGES 77
Query: 139 LTNNNKPT-KHI-SKRTGFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE 194
L + ++ T + + + + Q+ + L P T+ + L +L L R + +
Sbjct: 78 LLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY--EVLSLHRGMRREAARGEIL 135
Query: 195 AVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
+ +G+ + + + +SGGER+RV IA +L P LLI DEPT+ LD +
Sbjct: 136 NCLDRVGIRQAAKRL--TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 255 RLVSTLGSLVQR---GKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296
+++ L L Q G +T H S V ++ D+V V+ GRC
Sbjct: 194 QILQLLRELQQELNMGLLFIT--HNLSI-VRKLADRVAVMQNGRC 235
|
Length = 529 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 3e-13
Identities = 52/190 (27%), Positives = 97/190 (51%), Gaps = 22/190 (11%)
Query: 106 ILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTILTNNNK-------PTKHISKRTGF 155
+ AI+GPSG GKST+L + R+H +TG IL ++ P I +R G
Sbjct: 32 VTAIIGPSGCGKSTVLRSI-NRMHDLVPSARVTGKILLDDTDIYDRGVDPVS-IRRRVGM 89
Query: 156 VTQDDILYPHLTVRETLVFCSLL--RLPRTLSTKEKTSIAEAVMAELGL-TKCENTIIGN 212
V Q +P +++ + ++ L R+ R+ E I E+ + + L + ++ + N
Sbjct: 90 VFQKPNPFPAMSIYDNVIAGYKLNGRVNRS----EADEIVESSLKRVALWDEVKDRLKSN 145
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK-TIV 271
+ +SGG+++R+ IA + + P ++++DEP S LD + ++ + L ++ IV
Sbjct: 146 AME--LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIV 203
Query: 272 TSMHQPSSRV 281
T Q ++RV
Sbjct: 204 THNMQQAARV 213
|
Length = 252 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-13
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-----PTKHISKRTGFVTQ 158
GEIL + G G+G++ ++ L G G + N P + I V +
Sbjct: 286 GEILGVAGLVGAGRTELVQALFGAYPGKF--EGNVFINGKPVDIRNPAQAIRAGIAMVPE 343
Query: 159 D---DILYPHLTVRETLVFCSLLR---LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
D + P L V + + L R + E I A + L + T
Sbjct: 344 DRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSA-IQRLKV----KTASPF 398
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIV 271
I +SGG +++ +A +L NP +LILDEPT G+D A Y + + L Q G IV
Sbjct: 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV 458
Query: 272 TSMHQPSSRVYQMFDKVLVLSEGR 295
S V + D+VLV+ EG+
Sbjct: 459 VSSELA--EVLGLSDRVLVIGEGK 480
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 27/228 (11%)
Query: 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN----KPTKHIS 150
N + V EI++++GP+G+GK+T+ N L G ++ G GTIL P I+
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG-FYKPTG--GTILLRGQHIEGLPGHQIA 78
Query: 151 KRTGFVT--QDDILYPHLTVRETL-----------VFCSLLRLPR-TLSTKEKTSIAEAV 196
R G V Q L+ +TV E L +F LL+ P + E A
Sbjct: 79 -RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+ +GL + N GN ++ G+++R+ IA M+ P +L+LDEP +GL+ L
Sbjct: 138 LERVGLLEHANRQAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ L V + V + D++ V+++G L G E
Sbjct: 193 DELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240
|
Length = 255 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 4e-13
Identities = 57/194 (29%), Positives = 102/194 (52%), Gaps = 16/194 (8%)
Query: 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH---ISKRTGFVTQDDI 161
+I A LG +G+GK+T L++L G L +GT+L + + + G Q +I
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPP---TSGTVLVGGKDIETNLDAVRQSLGMCPQHNI 1013
Query: 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGG 221
L+ HLTV E ++F + L+ S +E EA++ + GL N + +SGG
Sbjct: 1014 LFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRN-----EEAQDLSGG 1065
Query: 222 ERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV 281
++++S+A + + +++LDEPTSG+D + R + L + G+TI+ S H
Sbjct: 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR-RSIWDLLLKYRSGRTIIMSTHH-MDEA 1123
Query: 282 YQMFDKVLVLSEGR 295
+ D++ ++S+GR
Sbjct: 1124 DLLGDRIAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-13
Identities = 55/193 (28%), Positives = 81/193 (41%), Gaps = 56/193 (29%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRL---------HQGHGLTGTILTNNNKPTKHISKRT 153
PGE+L I+G SGSGK+T+LN L+ RL G + + + + RT
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLL-RT 89
Query: 154 --GFVTQD--DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------- 201
GFV Q D L ++ +I E +MA +G
Sbjct: 90 EWGFVHQHPRDGLRMQVSA--------------------GGNIGERLMA-VGARHYGDIR 128
Query: 202 ------LTKCENTIIGNSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251
L + E I + I SGG ++R+ IA ++ +P L+ +DEPT GLD +
Sbjct: 129 ATAGDWLERVE---IDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185
Query: 252 AAYRLVSTLGSLV 264
RL+ L LV
Sbjct: 186 VQARLLDLLRGLV 198
|
Length = 258 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 55/199 (27%), Positives = 105/199 (52%), Gaps = 17/199 (8%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNN--NKPTKHISKRTGFVTQ 158
G+ AI+G +GSGKST++ + L G + +T+ +K + + KR G V Q
Sbjct: 33 GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ 92
Query: 159 DDILYPHLTVRETLVFCSLLRLPRT--LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIR 216
+P + E V ++ P+ ++ E + A ++ +LG ++ + + + F
Sbjct: 93 ----FPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR--DVMSQSPF-- 144
Query: 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL-VQRGKTIVTSMH 275
+SGG+ ++++I + +NP +++LDEPT+GLD + +++ L SL KTI+ H
Sbjct: 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204
Query: 276 QPSSRVYQMFDKVLVLSEG 294
+ V + D+V+V+ EG
Sbjct: 205 D-MNEVARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-13
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 24/213 (11%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVT 157
G+ +AI+GP+G+GK+T++N+L G + G + + + + K V
Sbjct: 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR--ESLRKSIATVF 415
Query: 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE----LGLTKCENTIIGNS 213
QD L+ ++RE + RL R +T E+ A A L + +T++G
Sbjct: 416 QDAGLFNR-SIRENI------RLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGE- 467
Query: 214 FIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
RG +SGGER+R++IA +L N +L+LDE TS LD R+ + + +L + T +
Sbjct: 468 --RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFI 525
Query: 272 TSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ H+ S+ + D VL L +GR + G E
Sbjct: 526 IA-HRLST--VRNADLVLFLDQGRLIEKGSFQE 555
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 42/222 (18%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI--------LTNNNKPTKHISKRT- 153
PGE+L I+G SGSGK+T+L ++GRL G L ++ + RT
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTE 90
Query: 154 -GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA----------ELGL 202
GFV Q+ P +R + +I E +MA
Sbjct: 91 WGFVHQN----PRDGLR--------------MQVSAGGNIGERLMAIGARHYGNIRAEAQ 132
Query: 203 TKCENTIIGNSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
E I I R SGG ++R+ IA ++ P L+ +DEPT GLD + RL+
Sbjct: 133 DWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
L LV+ V + + + D+++V+ +G+ + G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 5e-13
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 29/209 (13%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTILTNNNK-- 144
E+ LN I + +I A++GPSG GKST L L R++ + G +L +
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCL-NRMNDLISNVKIEGEVLLDGKNIY 74
Query: 145 ----PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ KR G V Q +P +++ + + + PR K+K + + V E
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYG-----PRIHGIKDKKELDKIV--EW 126
Query: 201 GLTKC------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
L K ++ + ++ +SGG+++R+ IA + + P ++++DEPTS LD +
Sbjct: 127 ALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL 184
Query: 255 RLVSTLGSLVQRGKTIVTSMH--QPSSRV 281
++ + L ++ TIV H Q +SRV
Sbjct: 185 KIEDLMVEL-KKEYTIVIVTHNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 6e-13
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN--KPTKHISKRT----G 154
V GEI+ I G +G+G+S ++ ++G L + G IL N +R
Sbjct: 281 VRAGEIVGIAGVAGNGQSELVEAISG-LRKPAS--GRILLNGKDVLGRLSPRERRRLGLA 337
Query: 155 FVTQDDI---LYPHLTVRETLVFCSLLRLP----RTLSTKEKTSIAEAVMAELGLTKCEN 207
+V +D L L++ E LV + P L + A ++ E + + +
Sbjct: 338 YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV-RAPS 396
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
++ R +SGG ++++ +A E+ P LLI +PT GLD A + L L G
Sbjct: 397 P---DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG 453
Query: 268 KTIV---TSMHQPSSRVYQMFDKVLVLSEGR 295
K ++ + + + ++ D++ V+ EGR
Sbjct: 454 KAVLLISEDLDE----ILELSDRIAVIYEGR 480
|
Length = 501 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 6e-13
Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 26/216 (12%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISK 151
T L + V G I A++G +GSGKST+ L G + G + + +
Sbjct: 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK--N 78
Query: 152 RTGFVTQD---DILYPHLTVRETLVFCS------LLRLPRTLSTKEKTSIAEAVMAELGL 202
+V Q D +P L E +V LR K I A +A + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLV--EDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDM 132
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ + IG +SGG++KRV +A + +++LDEP +G+D R++S L
Sbjct: 133 VEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187
Query: 263 LVQRGKTIVTSMHQPSSRV----YQMFDKVLVLSEG 294
L GKT++ S H S Y + K VL+ G
Sbjct: 188 LRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-13
Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 22/227 (9%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG------------LTGTILTN 141
++ ++ V GEI I+G SG+GK+T+ ++AG L G +T
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ ++I G + Q+ LYPH TV + L L LP L+ + A + +G
Sbjct: 360 RGRAKRYI----GILHQEYDLYPHRTVLDNLTEAIGLELPDELARMK----AVITLKMVG 411
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV-STL 260
+ + I + + +S GER RV++A ++ P ++ILDEPT +D + S L
Sbjct: 412 FDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL 471
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ + +T + H V + D+ ++ +G+ + G E +
Sbjct: 472 KAREEMEQTFIIVSHD-MDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTN--NNK 144
ER L + + G +AI+G +GSGKST+L L G L G + ++T NK
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA--VMAELGL 202
K + K+ G V Q +P + E V + P E+ + +A ++ +GL
Sbjct: 79 KLKPLRKKVGIVFQ----FPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGL 134
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
E + + F +SGG+ +RV+IA + + P +L+LDEPT+GLD ++
Sbjct: 135 P--EELLARSPF--ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK 190
Query: 263 LVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294
L + +G T V H + D+++V+ +G
Sbjct: 191 LHKEKGLTTVLVTHSMED-AARYADQIVVMHKG 222
|
Length = 290 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 7e-13
Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 20/166 (12%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGRLH-QGHGLTGTILTNNNKP 145
L+G++ + G+ LA++G SG GKST+ +L G L+ QG L + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK----ADPEA 86
Query: 146 TKHISKRTGFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
K + ++ V Q+ L P V + L L + +LS E+ A A+MA++GL
Sbjct: 87 QKLLRQKIQIVFQNPYGSLNPRKKVGQILE--EPLLINTSLSAAERREKALAMMAKVGL- 143
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ E+ + + SGG+R+R++IA ++++P +++ DEP S LD
Sbjct: 144 RPEHY---DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 7e-13
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 29/197 (14%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
ER + +G++ ++ GE++ I GP+G+GK+++L +LAG G +L + I
Sbjct: 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQG----EPI 65
Query: 150 SK-RTGFVTQDDILY--------PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ R + D+LY LT E L F RL + + EA +A++
Sbjct: 66 RRQRDEY--HQDLLYLGHQPGIKTELTALENLRF--YQRLHGPGDDEA---LWEA-LAQV 117
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL E+ + +S G+++RV++A L L ILDEP + +D RL + L
Sbjct: 118 GLAGFEDVPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL 172
Query: 261 GSLVQRGKTIVTSMHQP 277
++G ++ + HQ
Sbjct: 173 AQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 46/167 (27%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-- 144
+ ILN I+ + GE I GPSG GKST+L ++A + +GT+L
Sbjct: 16 LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDIS 72
Query: 145 --PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ ++ + Q L+ TV + L+F +R + + +L
Sbjct: 73 TLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR--------NQQPDPAIFLDDLER 123
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+TI+ + I +SGGE++R+S+ + P +L+LDE TS LD
Sbjct: 124 FALPDTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 69/223 (30%), Positives = 106/223 (47%), Gaps = 38/223 (17%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH----I 149
LN ++ V PGE+ I+GP+G+GK+TM++V+ G+ G++L T I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQI 74
Query: 150 SKRTG----FVTQDDILYPHLTVRETL---------VFCSLLRLPRTLSTKEKTSIAEAV 196
+ R G F Q ++ +LTV E L VF SL LS +EK I E V
Sbjct: 75 A-RAGIGRKF--QKPTVFENLTVFENLELALPRDKSVFASLF---FRLSAEEKDRIEE-V 127
Query: 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSGLDSTAAY 254
+ +GL + + G +S G+++ + I ML+ +P LL+LDEP +G+
Sbjct: 128 LETIGLADEADRLAGL-----LSHGQKQWLEIG--MLLMQDPKLLLLDEPVAGMTDEETE 180
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297
+ L SL ++V H V + DKV VL +G L
Sbjct: 181 KTAELLKSL-AGKHSVVVVEHD-MEFVRSIADKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 1e-12
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 17/229 (7%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISK 151
L I ++ GE + I+G +GSGKST+ L G R +G L I T + + I K
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 152 RTGFVTQD-DILYPHLTVRETLVFC-SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
G V Q+ + + TV E L F L LP E + +AE+GL K +
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYRH-- 131
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+ +SGG+ + V++A + + P LI DE TS LD + ++ + L ++GKT
Sbjct: 132 ---RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKT 188
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS--YFESVGFSP 316
IV H D+++V+ G+ + G+ +S +++G +P
Sbjct: 189 IVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTP 235
|
Length = 274 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-12
Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 58/204 (28%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150
R +L ++ + PG+ L I GPSG+GKS++ LAG G +G I P
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRI----GMPEGE-- 64
Query: 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLP--RTLSTKEKTSIAEAVMAELGLTKCENT 208
F+ Q L P T+RE L++ P LS
Sbjct: 65 -DLLFLPQRPYL-PLGTLREQLIY------PWDDVLS----------------------- 93
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
GGE++R++ A +L P + LDE TS LD + RL L + G
Sbjct: 94 -----------GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL---LKELGI 139
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLS 292
T+++ H+PS + D+VL L
Sbjct: 140 TVISVGHRPSLWKF--HDRVLDLD 161
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 50/234 (21%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNNNKPTKH--- 148
L I + ++ A++GPSG GKST L L L + G +L + K
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 149 ---ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ KR G V Q +P +++ + + + PRT K+K + E V
Sbjct: 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYG-----PRTHGIKDKKKLDEIV--------- 123
Query: 206 ENTIIG-----------NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
E ++ G G+SGG+++R+ IA + + P +L++DEPTS LD
Sbjct: 124 EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDP---- 179
Query: 255 RLVSTLG--SLVQRGK---TIVTSMH--QPSSRVYQMFDKVLVLSEGRCLYFGK 301
+STL L+Q K TIV H Q +SR+ DK G + FG
Sbjct: 180 --ISTLKIEELIQELKKDYTIVIVTHNMQQASRIS---DKTAFFLNGEIVEFGD 228
|
Length = 250 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 15/211 (7%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKP 145
QE+ LN ++ V GE L+I+G +GSGKST + ++ G L G + G +LT N
Sbjct: 18 QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEEN-- 75
Query: 146 TKHISKRTGFVTQD-DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
I + G V Q+ D + TV + + F L + + +E + +G+
Sbjct: 76 VWDIRHKIGMVFQNPDNQFVGATVEDDVAF-GLEN--KGIPHEEMKERVNEALELVGMQD 132
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ +SGG+++RV+IA + + P ++ILDE TS LD L+ T+ +
Sbjct: 133 FKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIR 187
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ V S+ V + D+VLV+ G+
Sbjct: 188 DDYQMTVISITHDLDEV-ALSDRVLVMKNGQ 217
|
Length = 279 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-12
Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 33/219 (15%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I+ + G++LA+ G +GSGKS++L ++ G L G KH S R
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG-----------KIKH-SGR 488
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE--KTSIAEAVMAELGLTKC---EN 207
F Q + P T+++ ++F LS E TS+ +A E + +
Sbjct: 489 ISFSPQTSWIMPG-TIKDNIIF--------GLSYDEYRYTSVIKACQLEEDIALFPEKDK 539
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV-STLGSL-VQ 265
T++G I +SGG+R R+S+A + + L +LD P + LD + S L L
Sbjct: 540 TVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ + +VTS + + DK+L+L EG C ++G SE
Sbjct: 599 KTRILVTSKLEHLKKA----DKILLLHEGVCYFYGTFSE 633
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 32/177 (18%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
+R +L+ ++ + PG+IL +LGP+G+GKST++ V+ G + G I N
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNG------- 65
Query: 150 SKRTGFVTQD---DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
R G+V Q D P LTV R R +K I A L + +
Sbjct: 66 KLRIGYVPQKLYLDTTLP-LTVN---------RFLRLRPGTKKEDILPA------LKRVQ 109
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD---STAAYRLVSTL 260
+ ++ ++ +SGGE +RV +A +L P LL+LDEPT G+D A Y L+ L
Sbjct: 110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
|
Length = 251 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 26/220 (11%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN---NKPTKHIS 150
L + V PGEI A+LG +G+GKST++ VL+G +H+ GTI NN NK ++
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG-IHEPT--KGTITINNINYNKLDHKLA 77
Query: 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTK----------EKTSIAEAVMAEL 200
+ G I+Y L+V + L L + R L+ K E A ++ +
Sbjct: 78 AQLGI----GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
GL + + N +S ++ + IA ++++ ++I+DEPTS L + L +
Sbjct: 134 GLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
L + G IV H+ + + ++ D+ V+ +G + G
Sbjct: 189 NQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Query: 81 DQGST-AKIQERTIL----NGITGMVSPGEILAILGPSGSGKSTML---NVLA----GRL 128
DQG T +I +RT L + + + GEI ++G SGSGKST+L N L G +
Sbjct: 22 DQGKTREEILDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSV 81
Query: 129 HQGHGLTGTILTNNNKPT-KHI-SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLST 186
G + N + T + + + R V Q L P TV E + F L + + +
Sbjct: 82 LVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFG--LEM-QGMPK 138
Query: 187 KEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246
E+ + + +GL + + G +SGG ++RV +A +L++DEP S
Sbjct: 139 AERRKRVDEQLELVGLAQWADRKPGE-----LSGGMQQRVGLARAFATEAPILLMDEPFS 193
Query: 247 GLDSTAAYRLVSTLGSLVQR-GKTIVTSMH 275
LD +L L L + KTIV H
Sbjct: 194 ALDPLIRTQLQDELLELQSKLKKTIVFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 28/238 (11%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG---HG--LTGTILTNNNKP 145
R IL ++ + PG + A+LG +G+GKST+L LAG L G G +TG + T N +P
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDV-TLNGEP 72
Query: 146 TKHIS------KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199
I R + + RE + L R P + + +A
Sbjct: 73 LAAIDAPRLARLRAVLPQAAQPAFA-FSAREIV---LLGRYPHARRAGA-LTHRDGEIAW 127
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIA---------HEMLINPSLLILDEPTSGLDS 250
L T + + +SGGE RV A H+ P L+LDEPT+ LD
Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 251 TAAYRLVSTLGSLVQRGKT-IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+RL+ T+ L + ++ +H P+ D++ +L++G + G ++ ++
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVLT 244
|
Length = 272 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 26/241 (10%)
Query: 72 NRGSTSSTDDQG---STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128
N S+DD S + +L I + GE+LAI G +GSGK+++L ++ G L
Sbjct: 28 NNDRKHSSDDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87
Query: 129 HQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE 188
G KH S R F +Q + P T++E ++F R S +
Sbjct: 88 EPSEGK-----------IKH-SGRISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVK 134
Query: 189 KTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248
+ E + + +NT++G I +SGG+R R+S+A + + L +LD P L
Sbjct: 135 ACQLEEDITK---FPEKDNTVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 190
Query: 249 DSTAAYRLVSTLGSLVQRGKT--IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306
D + + + KT +VTS + + DK+L+L EG ++G SE
Sbjct: 191 DVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQ 246
Query: 307 S 307
S
Sbjct: 247 S 247
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-12
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 18/227 (7%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI----LT 140
T ++ LN I+ + G A++G +GSGKST+ ++ G L I +T
Sbjct: 14 TYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73
Query: 141 NNNKPTKHISKRTGFVTQD-DILYPHLTVRETLVFCSLLR-LPRTLSTKEKTSIAEAVMA 198
K I ++ G V Q+ D + TV + + F R +PR E I V+A
Sbjct: 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPR----PEMIKIVRDVLA 129
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
++G+ ++ N +SGG+++RV+IA + + P ++ILDE TS LD +++
Sbjct: 130 DVGMLDYIDSEPAN-----LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184
Query: 259 TLGSL-VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ L + T+++ H M D+VLVL +G+ L G E
Sbjct: 185 LIRKLKKKNNLTVISITHDIDEAN--MADQVLVLDDGKLLAQGSPVE 229
|
Length = 282 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 4e-12
Identities = 48/203 (23%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVL--------AGRLHQGHGLTGTILTNNNK 144
++ G+ + + A++GPSG GKST+L R+ L G + + +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRET----LVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ + G V Q +PHLT+ + + L++ + L + + ++ +A + +
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD- 137
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+ ++ + N + +SGG+R+R+ IA + + P +L++DEPT+ +D ++ L
Sbjct: 138 ---EVKDRL--NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192
Query: 261 GSLVQRGKTIVTSMHQP--SSRV 281
L ++ TIV H P ++RV
Sbjct: 193 FEL-KKEYTIVLVTHSPAQAARV 214
|
Length = 253 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 5e-12
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 22/232 (9%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGT-ILTNNNKPTKHIS-KRTGF 155
+ GEI I+G SGSGKSTM+ +L + G + G I ++ + + K+
Sbjct: 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAM 110
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFI 215
V Q L PH+TV + F L ++ +E+ A + ++GL EN +
Sbjct: 111 VFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGL---ENYAHS--YP 162
Query: 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
+SGG R+RV +A + INP +L++DE S LD + L L + + + +
Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 276 QPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM---------SYFESVGFSPSF 318
++ D++ ++ G + G E + ++F V S F
Sbjct: 223 HDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVF 274
|
Length = 400 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-12
Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-----PTKHI 149
I+ V GEIL G GSG++ ++N L G + G I N P +
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR---AGGEIRLNGKDISPRSPLDAV 336
Query: 150 SKRTGFVTQ---DDILYPHLTVRETLVFCSLLRLPR------TLSTKEKTSIAEAVMAEL 200
K ++T+ D+ +P+ ++ + + L+ ++ AE L
Sbjct: 337 KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL 396
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
L KC + N I +SGG +++V I+ + P ++I DEPT G+D A + +
Sbjct: 397 AL-KCHSV---NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 261 GSLVQRGKTI-VTSMHQPSSRVYQMFDKVLVLSEGR 295
L GK I + S P + + D++ V EGR
Sbjct: 453 RQLADDGKVILMVSSELP--EIITVCDRIAVFCEGR 486
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 6e-12
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 21/204 (10%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-----NKPTKHISKRTGFVTQ 158
GEIL I G G+G++ ++ L G G I + P + I++ V +
Sbjct: 288 GEILGIAGLVGAGRTELVQCLFGAYPGRW--EGEIFIDGKPVKIRNPQQAIAQGIAMVPE 345
Query: 159 D---DILYPHLTVRETLVFCSLLRL--PRTLSTKEKTSIAEAVMAELGL-TKCENTIIGN 212
D D + P + V + + +L R + + + L + T I
Sbjct: 346 DRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIAR 405
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIV 271
+SGG +++ +A +L+NP +LILDEPT G+D A Y + + LVQ+G IV
Sbjct: 406 -----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIV 460
Query: 272 TSMHQPSSRVYQMFDKVLVLSEGR 295
S P V + D+VLV+ EG+
Sbjct: 461 ISSELP--EVLGLSDRVLVMHEGK 482
|
Length = 506 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 6e-12
Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 19/200 (9%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPTK---- 147
L I + E+ AI+GPSG GKST + L + LTG + N + K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 148 --HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEK---TSIAEAVMAELGL 202
+ K G V Q +P +F ++ PR TK K I E + ++ L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQS------IFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVAL 141
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ + +SGG+++R+ IA + NP +L++DEPTS LD + ++ +
Sbjct: 142 WDEVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200
Query: 263 LVQRGK-TIVTSMHQPSSRV 281
L ++ IVT Q ++RV
Sbjct: 201 LKEKYTIVIVTHNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 7e-12
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 12/191 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPT 146
+ T+ +T + G AI+GP+G GKST+L L+ + HG L G + + +
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI--QHYAS 76
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKC 205
K +++R G + Q+ +TV+E + R P + L T+ + EAV + T
Sbjct: 77 KEVARRIGLLAQNATTPGDITVQE---LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI 133
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL-V 264
T + + + +SGG+R+R IA + ++++LDEPT+ LD + L+ L L
Sbjct: 134 --THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 265 QRGKTIVTSMH 275
++G T+ +H
Sbjct: 192 EKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 8e-12
Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 16/232 (6%)
Query: 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN 141
+G L+GI V PGE + + G +G+GKST++ +L+G ++ G I +
Sbjct: 5 KGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWS 63
Query: 142 NNK-PTKHIS--KRTGFVT--QDDILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEA 195
+ +I +R G V Q+ L P L+V E + + + LP ++ A+
Sbjct: 64 GSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKN 123
Query: 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
++ EL L T + GG+++ V IA + LLILDEP+S L
Sbjct: 124 LLRELQLDADNVTRP----VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L+ + L G V H+ + V + D + V+ +G+ + ++ MS
Sbjct: 180 LLDIIRDLKAHGVACVYISHK-LNEVKAVCDTICVIRDGQHV----ATKDMS 226
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 32/232 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNK----PT 146
+L+G+ + I A++GPSGSGKST+L V L+ ++G + +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTK-----------EKTSIAEA 195
+ +R V Q P+L++ E + L+L R + +K EK + +
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSKKELQERVRWALEKAQLWDE 135
Query: 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
V L + +SGG+++R+ IA + P +L+ DEPT+ LD +
Sbjct: 136 VKDRLDAPAGK-----------LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAK 184
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ S L ++ TIV H P + ++ D V L +G+ + +G E +
Sbjct: 185 IESLFLEL-KKDMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVFT 234
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 19/199 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNN----- 142
E L I + ++ A++GPSG GKST+L L L +G +TG + +
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 143 NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
N + + G V Q +P +++ E + + R K+K + E V L
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGL-----RAQGIKDKKVLDEVVERSLRG 128
Query: 203 TKCENTIIG--NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+ + S G+SGG+++R+ IA + + P ++++DEPTS LD A +++ +
Sbjct: 129 AALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM 188
Query: 261 GSLVQRGKTIVT---SMHQ 276
L ++ TIV SM Q
Sbjct: 189 EEL-KKNYTIVIVTHSMQQ 206
|
Length = 249 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 41/210 (19%)
Query: 106 ILAILGPSGSGKSTML------NVLAGRLHQGHGLTGTILTNNN----KPTKHI--SKRT 153
+ AI+GPSG GKST L N L H TG ++ + K T + K+
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHT----TGALMFDGEDIYGKFTDEVLLRKKI 122
Query: 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC------EN 207
G V Q +P +F ++ PR +K + E V E L K +
Sbjct: 123 GMVFQKPNPFP------KSIFDNIAYGPRLHGINDKKQLEEIV--EKSLRKAALWDEVSD 174
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
+ N+ G+SGG+++R+ +A + + P +L+LDEPTS LD A ++ + L RG
Sbjct: 175 RLDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL--RG 230
Query: 268 K---TIVTSMHQPSSRV--YQMF--DKVLV 290
IVT Q +SRV Y MF + VLV
Sbjct: 231 SYTIMIVTHNMQQASRVSDYTMFFYEGVLV 260
|
Length = 286 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-11
Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 12/207 (5%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHI--S 150
L+ ++ V GEI+++ G +G+GKST++ VL+G G G I+ + +I +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDT 79
Query: 151 KRTGFVT--QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+R G Q+ L L+V E + + + + A+ ++A+L L T
Sbjct: 80 ERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPAT 139
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+GN + G+++ V IA + LLILDEPT+ L + L+ + L G
Sbjct: 140 PVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGI 194
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ H+ + V + D + V+ +GR
Sbjct: 195 ACIYISHK-LNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 19/203 (9%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVTQD- 159
GEIL + G G+G++ ++ VL G L + G L G + + P ++ ++++D
Sbjct: 278 GEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS-PQDGLANGIVYISEDR 336
Query: 160 --DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL----TKCENTIIGNS 213
D L ++V+E + +L R + + +AV + L T IG
Sbjct: 337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL- 395
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV-T 272
+SGG +++V+IA ++ P +LILDEPT G+D A + + G +I+
Sbjct: 396 ----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILV 451
Query: 273 SMHQPSSRVYQMFDKVLVLSEGR 295
S P V M D++LV+ EGR
Sbjct: 452 SSEMP--EVLGMSDRILVMHEGR 472
|
Length = 501 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-11
Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 25/153 (16%)
Query: 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-TNNNKPTKHISKRTGFVT 157
G +S E++ ILGP+G GK+T + +LAG L G L T + KP + G V
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV- 78
Query: 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217
D+L T F + KT IA+ + E I + +
Sbjct: 79 -RDLLS-----SITKDFYT--------HPYFKTEIAKPLQIEQ---------ILDREVPE 115
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
+SGGE +RV+IA + + + +LDEP++ LD
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 30/247 (12%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH----I 149
L ++ + G+ +I+G +GSGKST+ ++ G + + +G I NN T +
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG-IEKVK--SGEIFYNNQAITDDNFEKL 81
Query: 150 SKRTGFVTQD-DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
K G V Q+ D + V+ + F L + E + ++ + +
Sbjct: 82 RKHIGIVFQNPDNQFVGSIVKYDVAF-GLEN--HAVPYDEMHRRVSEALKQVDMLE---- 134
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+ +SGG+++RV+IA + +NPS++ILDE TS LD A L LV++ K
Sbjct: 135 -RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR----QNLLDLVRKVK 189
Query: 269 -----TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE---SVGFSPSFPM 320
TI++ H S + D V+V+++G G +E + E +G FP+
Sbjct: 190 SEHNITIISITHDLSEAMEA--DHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLPFPI 247
Query: 321 NPADFLL 327
L
Sbjct: 248 KINQMLG 254
|
Length = 269 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 6e-11
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP----- 145
RT+L+ ++ G++ ++G +GSGKST+L +L GR HQ G IL + +P
Sbjct: 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GR-HQPPS-EGEILLDA-QPLESWS 79
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP-----RTLSTKEKTSIAEAVMAEL 200
+K +++ ++ Q +TVRE LV ++ R P ++ + EA+ + +
Sbjct: 80 SKAFARKVAYLPQQLPAAEGMTVRE-LV--AIGRYPWHGALGRFGAADREKVEEAI-SLV 135
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD---STAAYRLV 257
GL + + + +SGGER+R IA + + L+LDEPTS LD LV
Sbjct: 136 GLKP-----LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190
Query: 258 STLGSLVQRGKTIVTSMH 275
L +RG T++ +H
Sbjct: 191 HRLSQ--ERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 6e-11
Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 37/243 (15%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
LNGIT + G ++A++G G GKS++L+ L + + G H+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV------------HMKGSV 701
Query: 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-LTKCENTIIGN 212
+V Q + + ++RE ++F L E A A++ +L L + T IG
Sbjct: 702 AYVPQQAWI-QNDSLRENILFGKALNEKYYQQVLE----ACALLPDLEILPSGDRTEIGE 756
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY----RLVSTLGSLVQRGK 268
+ +SGG+++RVS+A + N + + D+P S +D+ ++ G L + K
Sbjct: 757 KGV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL--KNK 813
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLD 328
T + H S D ++V+S GK SE SY E + +F A+FL
Sbjct: 814 TRILVTHGIS--YLPQVDVIIVMSG------GKISEMGSYQELLQRDGAF----AEFLRT 861
Query: 329 LAN 331
A
Sbjct: 862 YAP 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 27/217 (12%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKP 145
L ++ V GE +AI+G +GSGKST+ +L G L G + G +L+
Sbjct: 18 AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEET-- 75
Query: 146 TKHISKRTGFVTQD-DILYPHLTVRETLVFCSLLR--LPRTLSTKEKTSIAEAVMAELGL 202
+ ++ G V Q+ D + TV++ + F L +PR + + +A+ ++G+
Sbjct: 76 VWDVRRQVGMVFQNPDNQFVGATVQDDVAF-GLENIGVPREEMVER---VDQAL-RQVGM 130
Query: 203 TKCENTIIGNSFIR----GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
F+ +SGG+++RV+IA + + P ++ILDE TS LD ++
Sbjct: 131 E---------DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE 181
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
T+ L ++ V S+ Q D+V+V+++G
Sbjct: 182 TVRQLKEQKGITVLSITHDLDEAAQA-DRVIVMNKGE 217
|
Length = 279 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 7e-11
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+T+L+ + V PGE L I G SG+GK+++L LAG G +G I + P
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRI----SMPADS 456
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
F+ Q L P T+RE L P + V+ ++GL
Sbjct: 457 ---ALLFLPQRPYL-PQGTLRE------ALCYPNAAPDFSDAELVA-VLHKVGLGDLAER 505
Query: 209 IIGNS-FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
+ + R +SGGE++R++ A +L P + LDE TS LD RL L +
Sbjct: 506 LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PD 564
Query: 268 KTIVTSMHQPS 278
T+++ H+P+
Sbjct: 565 ATVISVGHRPT 575
|
Length = 604 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-11
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVT 157
V GE L + G +G+GK+T+L VLAG LH G + G T ++ ++ ++ ++
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDR-SRFMA----YLG 88
Query: 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217
L L+ E L F L R K+ A A+ +GL E+T+ +R
Sbjct: 89 HLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAI---VGLAGYEDTL-----VRQ 137
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDS---TAAYRLVSTLGSLVQRGKTIVTS 273
+S G++KR+++A L L +LDEP + LD T R++S L G +VT+
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA--HLRGGGAALVTT 194
|
Length = 214 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 9e-11
Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 25/203 (12%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTILTN-NNKPTK-- 147
L GI+ + ++A +GPSG GKST L L R++ L G I + N K
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLR-LFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 148 ---HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG--- 201
+ K G V Q +P ++ E + + R K+ I + V L
Sbjct: 78 QVDELRKNVGMVFQRPNPFPK-SIFENVAYGL-----RVNGVKDNAFIRQRVEETLKGAA 131
Query: 202 -LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+ ++ + ++F +SGG+++R+ IA M ++PS+L++DEP S LD + ++ +
Sbjct: 132 LWDEVKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189
Query: 261 GSLVQRGKTIVTSMH--QPSSRV 281
L ++ TIV H Q ++RV
Sbjct: 190 HEL-KKDYTIVIVTHNMQQAARV 211
|
Length = 250 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 9e-11
Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 15/198 (7%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---------LTGTILTNNNK 144
+ GI+ + ++ AI+GPSG GKST + L R+ + G G + +
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTL-NRISELEGPVKVEGVVDFFGQNIYDPRI 81
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ ++ G V Q +P +++ E + + +R+ L + I E+ + L +
Sbjct: 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQ 138
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL- 263
+ S + G+SGG+++R+ IA + I P +L++DEP S LD A ++ + SL
Sbjct: 139 EVKDKLNKSAL-GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197
Query: 264 VQRGKTIVTSMHQPSSRV 281
+ IVT Q ++RV
Sbjct: 198 SELTIAIVTHNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 1e-10
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKST-------MLNVLAGRLHQGH-GLTGTILT 140
+ IL + + + A++GPSG GKST M +++ G H+GH L G +
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 141 NNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ + K+ G V Q +P +F ++ R ++ I E V L
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFP------KSIFDNVAYGLRIHGEDDEDFIEERVEESL 127
Query: 201 GLTKCENTI---IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257
+ + + S + G+SGG+++R+ IA + ++P ++++DEP S LD + ++
Sbjct: 128 KAAALWDEVKDKLDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186
Query: 258 STLGSLVQRGKTIVTSMH--QPSSRV 281
+ L + TIV H Q ++RV
Sbjct: 187 DLIHKL-KEDYTIVIVTHNMQQATRV 211
|
Length = 250 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 1e-10
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 20/225 (8%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTML---NVLAGRLHQGHGLTGTILTN-NNKPTK 147
LN ++ V G+I ++G SG+GKST++ N+L + G LT +N
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV---MAELGLTK 204
++ G + Q L TV + LP L K I V +A +GL
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVA------LPLELDNTPKDEIKRKVTELLALVGLGD 132
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
++ N +SGG+++RV+IA + NP +L+ DE TS LD ++ L +
Sbjct: 133 KHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEIN 187
Query: 265 QR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308
+R G TI+ H+ V ++ D V V+S G + G SE S+
Sbjct: 188 RRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQGTVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 24/201 (11%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGH------GLTGTILTNNNK 144
+L ++ V+ GE + + GPSGSGKST+L L +G G ++T +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 145 PTKHISKRT-GFVTQDDILYPHLT----VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199
+ + T G+V+Q + P ++ V E L L R + + + A ++
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL-------LARGVPREVARAKAADLLTR 138
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
L L + ++ +F SGGE++RV+IA +++ +L+LDEPT+ LD+T +V
Sbjct: 139 LNLPERLWSLAPATF----SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL 194
Query: 260 LGSLVQRGKTIVTSMHQPSSR 280
+ RG +V H R
Sbjct: 195 IREAKARGAALVGIFHDEEVR 215
|
Length = 235 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 29/194 (14%)
Query: 105 EILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNK------PTKHISKRTGFV 156
E+ AI+GPSG GKST + L L TG IL + + + G V
Sbjct: 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMV 110
Query: 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG----LTKCENTIIGN 212
Q +P ++ + + + P+ K+K ++ E V L + ++ + N
Sbjct: 111 FQKPNPFPK-SIYDNVTYG-----PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN 164
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK---- 268
++ G+SGG+++R+ IA + I P ++++DEPTS LD + + + LVQ K
Sbjct: 165 AY--GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLK----VEELVQELKKDYS 218
Query: 269 -TIVTSMHQPSSRV 281
IVT Q ++R+
Sbjct: 219 IIIVTHNMQQAARI 232
|
Length = 271 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 3e-10
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 19/200 (9%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILT------NNNKP 145
LN I + I A++GPSG GKST L L L +G + G ++ +NN
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ ++ G V Q P L ++ ++ P+ TK+K + E V L +
Sbjct: 83 ILELRRKIGMVFQTP--NPFLMS----IYDNISYGPKIHGTKDKKKLDEIVEQSLKKSAL 136
Query: 206 ENTIIG--NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
N + N+ +SGG+++R+ IA + I P+++++DEPTS LD + ++ + +L
Sbjct: 137 WNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196
Query: 264 VQRGKTIVTSMH--QPSSRV 281
+ TI+ H Q + R+
Sbjct: 197 -KESYTIIIVTHNMQQAGRI 215
|
Length = 254 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 19/216 (8%)
Query: 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG----LTGTILTNNNKPTKHIS 150
+G+T + GE L ++G SG GKST + G + G L +L + + +
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 151 KRTGFVTQDDI--LYPHLTVRETLVFCSLLRL--PRTLSTKEKTSIAEAVMAELGLTKCE 206
+ QD + L P +T+ E + LR P+ LS +E +A+M ++GL
Sbjct: 98 SDIQMIFQDPLASLNPRMTIGE--IIAEPLRTYHPK-LSRQEVKDRVKAMMLKVGLL--P 152
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
N I N + SGG+ +R+ IA +++ P L+I DEP S LD + ++V+ L L QR
Sbjct: 153 NLI--NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL-QR 209
Query: 267 --GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
G +++ H + V + D+VLV+ G + G
Sbjct: 210 EMGLSLIFIAHDLAV-VKHISDRVLVMYLGHAVELG 244
|
Length = 331 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 22/195 (11%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTILTNNNK-------PTKHIS 150
+ P + A +GPSG GKST+L L R+H+ G + G +L + P +
Sbjct: 27 IEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA-VR 84
Query: 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTII 210
+ G V Q +P +++R+ +V + L+L + K+ + E + L +
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL 142
Query: 211 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD--STAAYRLVSTLGSLVQRGK 268
G+SGG+++R+ IA + + P +L++DEP S LD ST A + L + +++
Sbjct: 143 DKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA---IEDLINELKQDY 198
Query: 269 TIVTSMH--QPSSRV 281
TIV H Q ++RV
Sbjct: 199 TIVIVTHNMQQAARV 213
|
Length = 258 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 63/241 (26%), Positives = 117/241 (48%), Gaps = 29/241 (12%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH-IS 150
T+++ + + G ++ +LGPSG GK+T+L ++AG L + G I + T I
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTE--GQIFIDGEDVTHRSIQ 76
Query: 151 KR-TGFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
+R V Q L+PH+++ E + + +L +P K + V L L
Sbjct: 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVP-------KEERKQRVKEALELVDLAG- 128
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+ ++ ISGG+++RV++A +++ P +L+ DEP S LD+ + + L Q+
Sbjct: 129 -FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFN 187
Query: 269 TIVTSMH--QPSSRVYQMFDKVLVLSEGRC--------LYFGKGSEAMSYFESVGFSPSF 318
+TS++ S + + D V+V+++G+ LY S M+ F +G + F
Sbjct: 188 --ITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASF--MGDANIF 243
Query: 319 P 319
P
Sbjct: 244 P 244
|
Length = 351 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 4e-10
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277
+S GER+ V IA + N LLILDEPT+ L RL + L +G ++ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 278 SSRVYQMFDKVLVLSEGRC 296
V+++ D+V VL +GR
Sbjct: 143 DE-VFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 5e-10
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 14/224 (6%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNN----KPTK 147
LN + ++ ++G +GSGKSTM+ + G + G + G N K K
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
+ K G V Q +P + + + + P L + K + V L L +
Sbjct: 87 RLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLG-ENKQEAYKKVPELLKLVQLPE 141
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL-VQR 266
+ S +SGG+++RV++A + ++ + L+LDEPT GLD ++ L +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310
K I+ H +V ++ D+V+V+ EG+ + G E S E
Sbjct: 201 KKRIIMVTHN-MDQVLRIADEVIVMHEGKVISIGSPFEIFSNQE 243
|
Length = 289 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 5e-10
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 42/182 (23%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG----LTG-------TI 138
+R IL+ ++ V+PGE I+GP+G+GKST+L+++ G QG+ L G TI
Sbjct: 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331
Query: 139 LTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR-----------LPRTLSTK 187
I K G+V+ HL R V S+ + + +S +
Sbjct: 332 W--------DIKKHIGYVSSS----LHLDYR---VSTSVRNVILSGFFDSIGIYQAVSDR 376
Query: 188 EKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247
++ +A+ + LG+ K ++ +S G+++ I ++ +P+LLILDEP G
Sbjct: 377 QQ-KLAQQWLDILGIDKR----TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431
Query: 248 LD 249
LD
Sbjct: 432 LD 433
|
Length = 490 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 7e-10
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 25/165 (15%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHIS 150
++ GI V+ GE + ++GPSG GKST+L ++AG R+ G G + N +P +
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP----A 74
Query: 151 KR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV-MAELGLTKCENT 208
R V Q+ LYPH++VRE + + L++ + + +AEA + EL
Sbjct: 75 DRDIAMVFQNYALYPHMSVRENMAYG--LKIRGMPKAEIEERVAEAARILELE------- 125
Query: 209 IIGNSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ R +SGG+R+RV++ ++ P++ + DEP S LD
Sbjct: 126 ----PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 9e-10
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L+ I+ G++ A++G +G+GKST+L +L+G G+IL + + + S
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILI-DGQEMRFASTTA 75
Query: 154 GF------VTQDDILYPHLTVRETLVFCSLLRLPRTLS-TKEKTSIAEAV--MAELGLTK 204
+ Q+ L P +TV E L L +LP + EA + LG+
Sbjct: 76 ALAAGVAIIYQELHLVPEMTVAENLY---LGQLPHKGGIVNRRLLNYEAREQLEHLGV-- 130
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
I ++ ++ +S G+R+ V IA + N ++ DEPTS L + +L + L
Sbjct: 131 ---DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
G+ I+ H+ ++ + D + V +GR
Sbjct: 188 AEGRVILYVSHR-MEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 9e-10
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 28/218 (12%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK- 147
+ L + + PG++L I GP+GSGKST+L+++ G I ++ TK
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI---QRHFDVSEGDIRFHDIPLTKL 382
Query: 148 ---HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE----- 199
R V+Q L+ TV + L R +T+++ A +A
Sbjct: 383 QLDSWRSRLAVVSQTPFLFSD-TVANNIA------LGRPDATQQEIEHV-ARLASVHDDI 434
Query: 200 LGLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257
L L + +T +G RG+ SGG+++R+SIA +L+N +LILD+ S +D ++++
Sbjct: 435 LRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQIL 491
Query: 258 STLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L G+T++ S H+ S+ ++LV+ G
Sbjct: 492 HNL-RQWGEGRTVIISAHRLSALTEA--SEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 9e-10
Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 24/238 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT---GTILTNNNKPTKHIS 150
LNG++ ++ GE ++I+G +GSGKST ++ G + G G +LT N ++
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN--VWNLR 80
Query: 151 KRTGFVTQD-DILYPHLTVRETLVFCSLLR-LPRTLSTKEKTSIAEAVMA--ELGLTKCE 206
++ G V Q+ D + TV + + F + +PR K + EA++A L E
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNMLDFKTRE 137
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+SGG+++RV++A + + P ++ILDE TS LD T ++ + + ++
Sbjct: 138 PA--------RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE---SVGFSPSFPMN 321
+ V S+ D++LV+ G + SE + E +G F N
Sbjct: 190 YQLTVLSITHDLDEAASS-DRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSSN 246
|
Length = 277 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Query: 460 LFFFISVFWGVLPSVNAVFAFPQERAIFMKER--ASGMYTLSSYFMSRIIGDLPVELILP 517
L + ++ ++ + +E+ +KER SG+ + Y + +I+GDL V LI
Sbjct: 97 LLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGV-SPLKYLLGKILGDLLVGLI-- 153
Query: 518 TVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTML 577
LII+ + G F + LL+ L Y L LG LG++ +++ A ++++ +L
Sbjct: 154 -QLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILIL 212
Query: 578 --AFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDG 618
+ G + + MPS + WI I + L+ + YGD
Sbjct: 213 LLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDL 255
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 49/192 (25%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN---KPTK 147
+ IL I+ PG + +LG +G+GKST+L ++AG + N +P
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-----------VDKEFNGEARPAP 66
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA--------EAVMAE 199
I + G++ Q+ L P TVRE V + + L + S +A++AE
Sbjct: 67 GI--KVGYLPQEPQLDPTKTVREN-VEEGVAEIKDALDRFNEISAKFAEPDADMDALLAE 123
Query: 200 LGLTKCENTI----------------------IGNSFIRGISGGERKRVSIAHEMLINPS 237
+ + I ++ + +SGGER+RV++ +L P
Sbjct: 124 QA--ELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 238 LLILDEPTSGLD 249
+L+LDEPT+ LD
Sbjct: 182 MLLLDEPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 33/216 (15%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGR-LHQGHGLTGTILTNNNKP 145
L I + G+ +A++G SGSGKST+ N+L G L GH L L +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLAS---- 414
Query: 146 TKHISKRTGFVTQDDILYPHL---TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ + V+Q+ HL T+ + + S ++ A A +
Sbjct: 415 ---LRNQVALVSQN----VHLFNDTIANNIAYAR----TEQYSREQIEEAARMAYAMDFI 463
Query: 203 TKCEN---TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
K +N T+IG + + +SGG+R+R++IA +L + +LILDE TS LD+ + + +
Sbjct: 464 NKMDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L L Q+ +T + H+ S+ + D++LV+ +G
Sbjct: 523 LDEL-QKNRTSLVIAHRLST--IEKADEILVVEDGE 555
|
Length = 582 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 59/232 (25%), Positives = 98/232 (42%), Gaps = 40/232 (17%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L+GI+ E+ A++GPSG GKST L L R+ N++ I+
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRM------------NDDIENIKITGEI 66
Query: 154 GFVTQDDILYPHLTVRET-----LVFCSLLRLP-----------RTLSTKEKTSIAEAVM 197
F Q+ I + + E +VF P + K+K I + V
Sbjct: 67 KFEGQN-IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVE 125
Query: 198 AELGLT----KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253
L + ++ + N+ + SGG+++R+ IA + + P +++LDEPTS LD ++
Sbjct: 126 ESLKQAAIWKETKDNLDRNA--QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183
Query: 254 YRLVSTLGSLVQRGKTI-VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ TL L + I VT Q + R+ D+ L G + G E
Sbjct: 184 SEIEETLMELKHQYTFIMVTHNLQQAGRIS---DQTAFLMNGDLIEAGPTEE 232
|
Length = 251 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLT---GTILTNNNKPTKHISKRTGFVTQD- 159
GE LAI+G SGSGKS L L Q GL +L ++ +S+++ +
Sbjct: 42 GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHV 101
Query: 160 ---DI----------LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
D+ L P TV E + +RL + S +E A+ ++ ++ + + +
Sbjct: 102 RGADMAMIFQEPMTSLNPVFTVGEQIA--ESIRLHQGASREEAMVEAKRMLDQVRIPEAQ 159
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
TI+ + +SGG R+RV IA + P++LI DEPT+ LD T +++ + L +
Sbjct: 160 -TILSR-YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
V + V ++ D+VLV+ +G + G
Sbjct: 218 MSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG 251
|
Length = 623 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-09
Identities = 38/176 (21%), Positives = 63/176 (35%), Gaps = 69/176 (39%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK 144
+ + +L I+ ++PG+ + ++G +G+GKST+L ++AG L G
Sbjct: 7 SKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG----------I 56
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
T + + G+ Q LS EK +A
Sbjct: 57 VTWGSTVKIGYFEQ-------------------------LSGGEKMRLA----------- 80
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+A +L NP+LL+LDEPT+ LD + L L
Sbjct: 81 -----------------------LAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 40/191 (20%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN-NNKPTKH 148
R I + I+ V G+I AI+GPSG GK+T+L ++ G++ H G IL + N P
Sbjct: 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDGENIPAMS 75
Query: 149 IS------KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
S KR + Q L+ + V + + + +E T + ++ +
Sbjct: 76 RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY----------PLREHTQLPAPLLHSTVM 125
Query: 203 TKCENTIIGNSFIRG--------ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
K E +G +RG +SGG +R ++A + + P L++ DEP G D
Sbjct: 126 MKLE--AVG---LRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI--- 177
Query: 255 RLVSTLGSLVQ 265
T+G LV+
Sbjct: 178 ----TMGVLVK 184
|
Length = 269 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 33/202 (16%)
Query: 75 STSSTDDQGSTAKIQERTI---------LNGITGMVSPGEILAILGPSGSGKSTMLNVLA 125
+ + + +KIQ R + L I ++ ++ A +GPSG GKST+L
Sbjct: 1 AAMMSMVATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF- 59
Query: 126 GR---LHQGHGLTGTILTNNNK---PTKHIS---KRTGFVTQDDILYPHLTVRETLVFCS 176
R L+ G IL + P + I+ + G V Q +P +++ + + F
Sbjct: 60 NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFG- 117
Query: 177 LLRLPRTLSTKEKTSIAEAVMAELGLTKC----ENTIIGNSFIRGISGGERKRVSIAHEM 232
+RL LS + + E V E LTK E + +SGG+++R+ IA +
Sbjct: 118 -VRLFEKLS---RAEMDERV--EWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171
Query: 233 LINPSLLILDEPTSGLD--STA 252
I P +L+LDEP S LD ST
Sbjct: 172 AIRPEVLLLDEPCSALDPISTG 193
|
Length = 260 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNN-NKPTKHIS 150
L+ I+ ++ A++GPSG GKST L L L G + G IL + N H+
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 151 -----KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+R G V Q +P ++ E + + R K+K +AE V L
Sbjct: 82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGL-----RVNGVKDKAYLAERVERSLRHAAL 135
Query: 206 ENTI---IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ + + S + G+SGG+++R+ IA + + P +L++DEP S LD A ++ +
Sbjct: 136 WDEVKDRLHESAL-GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194
Query: 263 LVQRGK-TIVTSMHQPSSRV 281
L R IVT Q ++RV
Sbjct: 195 LKARYTIIIVTHNMQQAARV 214
|
Length = 253 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-----TNNNKPTKH 148
L+G V PG ++A++G +G+GKSTM+ VL G + G+IL N P
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSS 76
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT----LSTKEKTSIAEAVMAELGLTK 204
G + Q+ L P LT+ E +F L R + K+ + A+ ++A L L
Sbjct: 77 QEAGIGIIHQELNLIPQLTIAEN-IF--LGREFVNRFGRIDWKKMYAEADKLLARLNLRF 133
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ ++G +S GE++ V IA + ++I+DEPT L T L + L
Sbjct: 134 SSDKLVGE-----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK 188
Query: 265 QRGKTIVTSMHQPSSRVYQMF---DKVLVLSEG 294
+G+ IV H R+ ++F D V V +G
Sbjct: 189 SQGRGIVYISH----RLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 5e-09
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 49/264 (18%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN--- 141
T K + +L I+ + GE+L ILG SG+GKS +++VL G + Q +G I+ +
Sbjct: 7 TKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVAL 65
Query: 142 ----------------------------------NNKPTKHISKRTGFVTQDDI-LYPHL 166
++K + I KR + Q LY
Sbjct: 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD 125
Query: 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV 226
TV + ++L + + K ++ AV + + + + I R +SGGE++RV
Sbjct: 126 TVLD-----NVLEALEEIGYEGKEAVGRAVDL-IEMVQLSHRIT--HIARDLSGGEKQRV 177
Query: 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMF 285
+A ++ P L + DEPT LD A + + L V+ G ++V + H P + +
Sbjct: 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLS 236
Query: 286 DKVLVLSEGRCLYFGKGSEAMSYF 309
DK + L G G E ++ F
Sbjct: 237 DKAIWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 7e-09
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 43/160 (26%)
Query: 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
G + GE++ I+GP+G GK+T +LAG L KP + G V
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVL---------------KPDE------GEVDP 398
Query: 159 D-DILY--------PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+ I Y TV + L + S+ K+ I + L L +
Sbjct: 399 ELKISYKPQYIKPDYDGTVEDLLRSIT----DDLGSSYYKSEIIKP----LQLER----- 445
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ + ++ +SGGE +RV+IA + + L +LDEP++ LD
Sbjct: 446 LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 7e-09
Identities = 55/210 (26%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN----KPTKHISKRTGFVTQD 159
G+ LAI+G +GSGKST+ +LAG + +G IL N++ SKR + QD
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGDYSFRSKRIRMIFQD 95
Query: 160 --DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217
L P L + + L F LRL L +++ + +GL ++ N +
Sbjct: 96 PNTSLNPRLRIGQILDFP--LRLNTDLEPEQRRKQIFETLRMVGLLP-DHA---NYYPHM 149
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277
++ G+++RV++A +++ P ++I DE + LD + +L++ + L ++ + Q
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
Query: 278 SSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ + D+VLV+ EG + G ++ ++
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 15/187 (8%)
Query: 105 EILAILGPSGSGKSTMLNVLAGRLH---QGHGLTGTILTNN---NKP---TKHISKRTGF 155
+I A++GPSGSGKST L L R++ +TG IL N+ + K G
Sbjct: 47 KITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGM 105
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFI 215
V Q + ++ E + F L K I E + + L + S +
Sbjct: 106 VFQRPNPFAK-SIYENITFA--LERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSAL 162
Query: 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTI-VTSM 274
+SGG+++R+ IA + + P +L++DEP S LD + +L T+ L + I VT
Sbjct: 163 -TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN 221
Query: 275 HQPSSRV 281
Q ++R
Sbjct: 222 MQQAARA 228
|
Length = 267 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 8e-09
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 24/199 (12%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTML-------NVLAGRLHQGH-GLTGTILT 140
+ + +L+ + + ++ A +GPSG GKST L +++ G H+G GT
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152
Query: 141 NNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
+ + + R G V Q T E +F ++ PR ++ + + V L
Sbjct: 153 SKKISSLELRTRIGMVFQKP------TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSL 206
Query: 201 GLTKCENTI------IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
+ + GN+ +SGG+++R+ IA + + P +L++DEPTS LD A
Sbjct: 207 KSAALWDEVKDDLDKAGNA----LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
Query: 255 RLVSTLGSLVQRGKTIVTS 273
++ + L ++ I+ +
Sbjct: 263 KIEELILELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 9e-09
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 27/220 (12%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150
+ +L ++ V G++ +LG +GSGKST+L L + G
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA------------E 720
Query: 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL--GLTKCENT 208
+ +V Q + + TVR ++F R L+ + S EA +A+L GL T
Sbjct: 721 RSIAYVPQQAWIM-NATVRGNILFFDEEDAAR-LADAVRVSQLEADLAQLGGGL----ET 774
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST--LGSLVQR 266
IG + +SGG++ RVS+A + N + +LD+P S LD+ R+V LG+L
Sbjct: 775 EIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL--A 831
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306
GKT V + HQ V D V+ L +GR + G ++ M
Sbjct: 832 GKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFM 869
|
Length = 1560 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 19/204 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNNNK--- 144
E+ L IT + + A++GPSG GKST+L L G +TG IL N
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 145 ---PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ ++ G V Q +P ++ E + + PR K K ++ V L
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYG-----PRIHGEKNKKTLDTIVEKSLK 131
Query: 202 LTKCENTIIG--NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
+ + + +SGG+++R+ IA + +NP ++++DEP S LD A + +
Sbjct: 132 GAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAK-IED 190
Query: 260 LGSLVQRGKT--IVTSMHQPSSRV 281
L +++ T IVT Q ++RV
Sbjct: 191 LIEDLKKEYTVIIVTHNMQQAARV 214
|
Length = 253 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTML---NVLAGRLHQGHGLTGTILTN-NNKP 145
++ L I + +I A++G SG GKST L N + ++ + GL + N+
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPR----TLSTKEKTSIAEAVMAELG 201
+ K G V Q P++ V+ ++ ++ P+ + E+ ++ + ++G
Sbjct: 74 VVALRKNVGMVFQQ----PNVFVKS--IYENISYAPKLHGMIKNKDEEEALVVDCLQKVG 127
Query: 202 L-TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
L + ++ + N+ +SGG+++R+ IA + I P LL+LDEPTS LD ++ + L
Sbjct: 128 LFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 261 GSLVQRGKTI-VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311
L I VT Q RV D G + FG+ E +FE+
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVA---DYTAFFHLGELIEFGESKE---FFEN 231
|
Length = 246 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 26/217 (11%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPT 146
E+ L+ + V GE L ILG +GSGKST+ + L +G + T++ +
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
Query: 147 KHISKRTGFVTQ--DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
I + G V Q D+ + + V E + F P L + I E V + L K
Sbjct: 81 WDIRNKAGMVFQNPDNQIVATI-VEEDVAFG-----PENLGIPPE-EIRERV--DESLKK 131
Query: 205 CENTIIGNSFIRG-----ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
+G R +SGG+++RV+IA + + P +I DEPT+ LD + +V+T
Sbjct: 132 -----VGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT 186
Query: 260 LGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ L ++ G TI+ H V D+++V+ G+
Sbjct: 187 IKELNKKYGITIILITHYMEEAVEA--DRIIVMDSGK 221
|
Length = 280 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 62/221 (28%), Positives = 92/221 (41%), Gaps = 58/221 (26%)
Query: 104 GEILAILGPSGSGKSTMLN-----VLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
G + + G SGSGKS+++N LA RLH G + + +HI K + Q
Sbjct: 21 GVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNH--DRIEGLEHIDKVI-VIDQ 77
Query: 159 DDI---------LYPHL--TVRETLVFCSLLR----LPRTLSTKEK-TSIAEAVMAELGL 202
I Y + +RE +FC + + TL + K SIA+ L +
Sbjct: 78 SPIGRTPRSNPATYTGVFDEIRE--LFCEVCKGKRYNRETLEVRYKGKSIADV----LDM 131
Query: 203 TKCE------------NTI-----IGNSFIR------GISGGERKRVSIAHEMLINPS-- 237
T E + +G +I+ +SGGE +R+ +A E L S
Sbjct: 132 TVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKE-LSKRSTG 190
Query: 238 --LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276
L ILDEPT+GL +L+ L LV +G T+V H
Sbjct: 191 KTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 21/207 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL--------AGRLHQGHGLTGTILTNNNKP 145
L G++ + + A++GPSG GKST L L A R+ L G + +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCS----------LLRLPRTLSTKEKTSIAEA 195
+ KR G V Q +P ++RE + + L RL + + E
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
+ + L N + ++ + G+SGG+++R+ IA + ++P ++++DEP S LD A +
Sbjct: 180 SLRQAALWDEVNDRLDDNAL-GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSK 238
Query: 256 LVSTLGSLVQRGK-TIVTSMHQPSSRV 281
+ + L + +VT Q ++R+
Sbjct: 239 IEDLIEELAEEYTVVVVTHNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 16/196 (8%)
Query: 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN 142
G ++ ER +L + + PG+++A++G SG+GK+T+L ++ G +G G
Sbjct: 388 GVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA-QKGRGEEKYRPD-- 444
Query: 143 NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ K T P E + L L + A ++ GL
Sbjct: 445 -SGKVEVPKNTVSALIPGEYEP--EFGEVTILEHLRSKTGDL------NAAVEILNRAGL 495
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ + ++ +S G+++R +A + P++L++DE + LD A R+ +
Sbjct: 496 S---DAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552
Query: 263 LVQR-GKTIVTSMHQP 277
L + G T++ H+P
Sbjct: 553 LAREAGITLIVVTHRP 568
|
Length = 593 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 2e-08
Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
+ L+ I + G ++AI+G +G GK+++++ + G L H T +++ I
Sbjct: 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL--SHAETSSVV---------I 677
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN-T 208
+V Q ++ + TVRE ++F S R + T A+ +L L + T
Sbjct: 678 RGSVAYVPQVSWIF-NATVRENILFGSDFESERYWRAIDVT----ALQHDLDLLPGRDLT 732
Query: 209 IIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
IG RG ISGG+++RVS+A + N + I D+P S LD+ A+++ + +
Sbjct: 733 EIGE---RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK 789
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEG 294
GKT V +Q + D+++++SEG
Sbjct: 790 GKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 29/259 (11%)
Query: 53 YRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGP 112
Y++K E+ +K+ +++N+ D + + LN I+ V GEI+ I+G
Sbjct: 3 YKVKFEHVTKK----YKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGL 58
Query: 113 SGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETL 172
+GSGKST+ N++AG +T NK T I + L LT E +
Sbjct: 59 NGSGKSTLSNLIAG------------VTMPNKGTVDIKGSAALIAISSGLNGQLTGIENI 106
Query: 173 VFCSLLRLPRTLSTKEKTSIAEAVM--AELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230
L L L+ ++ I ++ A++G I ++ S G + R+ A
Sbjct: 107 ---ELKGLMMGLTKEKIKEIIPEIIEFADIG------KFI-YQPVKTYSSGMKSRLGFAI 156
Query: 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290
+ INP +L++DE S D T + + + ++GKTI H S+V K L
Sbjct: 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS-LSQVKSFCTKALW 215
Query: 291 LSEGRCLYFGKGSEAMSYF 309
L G+ +G E + ++
Sbjct: 216 LHYGQVKEYGDIKEVVDHY 234
|
Length = 549 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-08
Identities = 62/220 (28%), Positives = 99/220 (45%), Gaps = 32/220 (14%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKS----TMLNVLAGRLHQGHG---LTGTILTNNN 143
+ +++G++ + G +LA++G SGSGKS L +L + Q G L G +
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 144 KPTKHISK-----RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA 198
+ I+ R+ F + + H RET C L P +T A +
Sbjct: 76 LRGRKIATIMQNPRSAF---NPLHTMHTHARET---CLALGKPADDAT------LTAALE 123
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
+GL + + +SGG +R+ IA +L +I DEPT+ LD A R++
Sbjct: 124 AVGLENAAR--VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181
Query: 259 TLGSLVQR---GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L S+VQ+ G +VT H V ++ D V V+S GR
Sbjct: 182 LLESIVQKRALGMLLVT--HD-MGVVARLADDVAVMSHGR 218
|
Length = 254 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 27/204 (13%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTIL---TNNNKPTKH 148
L I+ + + A +GPSG GKST+L L + G I N
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 149 IS---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
++ +R G V Q +P ++ E +V+ R + + EAV E L
Sbjct: 101 VAELRRRVGMVFQRPNPFPK-SIYENVVYG-----LRLQGINNRRVLDEAV--ERSLRGA 152
Query: 206 ------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
++ + N+F G+SGG+++R+ IA + I P +L+LDEPTS LD + ++
Sbjct: 153 ALWDEVKDRLHENAF--GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL 210
Query: 260 LGSLVQRGKTIVTSMH--QPSSRV 281
+ L + TIV H Q ++RV
Sbjct: 211 ITELKSK-YTIVIVTHNMQQAARV 233
|
Length = 272 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKRTGFVTQDD 160
GEIL I G G+ ++ ++ L G + G L G + NN+ + I+ VT++
Sbjct: 274 GEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKI-NNHNANEAINHGFALVTEER 332
Query: 161 I---LYPHLTVRETLVFCSLLRLPRT-------LSTKEKTSIAEAVMAELGL-TKCENTI 209
+Y +L + F SL+ R L S + V+ + + T T
Sbjct: 333 RSTGIYAYLDIG----FNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ 388
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
IG+ +SGG +++V I +L P +L+LDEPT G+D A + + + L ++ K
Sbjct: 389 IGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443
Query: 270 IVTSMHQPSSRVYQMF---DKVLVLSEGR 295
I+ SS + ++ D++LV+S G
Sbjct: 444 IIII----SSEMPELLGITDRILVMSNGL 468
|
Length = 491 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-08
Identities = 65/215 (30%), Positives = 106/215 (49%), Gaps = 33/215 (15%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--------RLHQGHGLTGTILTNNNK 144
IL+ ++ + PGE +AI+GPSGSGKST+L +L G + G L G
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL------- 520
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA-ELGLT 203
+ + ++ G V Q+ L ++ E + + L L +AE + A +G+
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGM- 578
Query: 204 KCENTII--GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS-TAAYRLVSTL 260
+T+I G +SGG+R+R+ IA ++ P +L+ DE TS LD+ T A +VS
Sbjct: 579 ---HTVISEGGG---TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA--IVSE- 629
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
SL + T + H+ S+ + D++ VL GR
Sbjct: 630 -SLERLKVTRIVIAHRLST--IRNADRIYVLDAGR 661
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 44/197 (22%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160
PG+++ ILGP+G GKST L +LAG L G + P+ D+
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY------EDPPSW-----------DE 139
Query: 161 I--------LYPHLT------VRETLVFCSLLRLPRTLSTK--------EKTSIAEAVMA 198
+ L + +R + +P+ + K ++ + V+
Sbjct: 140 VIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVE 199
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
LGL + + + +SGGE +RV+IA +L + + DEP+S LD
Sbjct: 200 RLGLEN-----VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254
Query: 259 TLGSLVQRGKTIVTSMH 275
+ L + GK ++ H
Sbjct: 255 VIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 26/208 (12%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN---NKPTKHISKRTGFV- 156
V GEIL + G G+G++ + L G L G G I+ N N + G V
Sbjct: 286 VRAGEILGLAGVVGAGRTELAETLYG-LRPARG--GRIMLNGKEINALSTAQRLARGLVY 342
Query: 157 ----TQDDILYPHLTVRETLVFCSLL--RLPRTLSTKEKTSIAEAVMAELGLTKCENTII 210
Q LY L C+L R + + ++ E L + K +
Sbjct: 343 LPEDRQSSGLY--LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-KFNH--- 396
Query: 211 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTI 270
R +SGG +++V IA + +P LLI+DEPT G+D +A + + S+ + +
Sbjct: 397 AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAV 456
Query: 271 VTSMHQPSS---RVYQMFDKVLVLSEGR 295
+ SS + QM D+VLV+ +G
Sbjct: 457 LFI----SSDLEEIEQMADRVLVMHQGE 480
|
Length = 510 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 6e-08
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 25/152 (16%)
Query: 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158
G + GE++ ILGP+G GK+T + +LAG + G + L + KP G
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG-SEEDLKVSYKPQYISPDYDG---- 416
Query: 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218
TV + + S +R S+ KT I + L L + + +
Sbjct: 417 --------TVED--LLRSAIR-SAFGSSYFKTEI----VKPLNLED-----LLERPVDEL 456
Query: 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
SGGE +RV+IA + L +LDEP++ LD
Sbjct: 457 SGGELQRVAIAAALSREADLYLLDEPSAYLDV 488
|
Length = 591 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 6e-08
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 21/189 (11%)
Query: 105 EILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNNNK------PTKHISKRTGFV 156
+I+A +GPSG GKST+L L G + G +L + + + ++ G V
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMV 106
Query: 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIR 216
Q +P ++ E + F PR K ++ E V L + +
Sbjct: 107 FQRPNPFPK-SIYENIAFA-----PRA--NGYKGNLDELVEDSLRRAAIWEEVKDKLKEK 158
Query: 217 G--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
G +SGG+++R+ IA + + P +L++DEP S LD + R V L ++ TI+
Sbjct: 159 GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST-RQVEELCLELKEQYTIIMVT 217
Query: 275 H--QPSSRV 281
H Q +SRV
Sbjct: 218 HNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 8e-08
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 41/224 (18%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-- 144
KIQ L+ ++ ++ GEI+ ++G +G+GK+T+L L G +G I+ +
Sbjct: 17 KIQ---ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRATSGRIVFDGKDIT 70
Query: 145 --PTKHISKRT-GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
T I + V + ++ +TV E L E+ E +
Sbjct: 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFF--------AERDQFQERIKWVYE 122
Query: 202 LTKCENTIIGNSFIR----------GISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251
L F R +SGGE++ ++I ++ P LL+LDEP+ GL
Sbjct: 123 L-----------FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
Query: 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
++ T+ L ++G TI + Q +++ ++ D+ VL G
Sbjct: 172 IIQQIFDTIEQLREQGMTIFL-VEQNANQALKLADRGYVLENGH 214
|
Length = 237 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 9/192 (4%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTK 147
+ IL G++ + ++ AI+GPSG GKST L L R+++ + G + N +
Sbjct: 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-NRMNELESEVRVEGRVEFFNQNIYE 78
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
Q +++P + V+ ++ + + + K I + V + L +
Sbjct: 79 RRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD 138
Query: 208 TI---IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
I I S + +SGG+++R+ IA + + P +L++DEP GLD A+ ++ S + SL
Sbjct: 139 EIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLR 197
Query: 265 QRGK-TIVTSMH 275
R + T+V H
Sbjct: 198 LRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 1e-07
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNNNK--- 144
E+ L ++ + + A++GPSG GKST + L L + + G +
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 145 ---PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT--LSTKEKTSIAEAVMAE 199
+ K G V Q +P +++ + + + PR + K+ + E +
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYG-----PRIHGANKKDLDGVVENALRS 137
Query: 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259
L E + S +SGG+++R+ IA + + P +++ DEPTS LD + R+
Sbjct: 138 AALWD-ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL 196
Query: 260 LGSLVQRGKTIVTSMH--QPSSRV 281
+ +L ++ TIV H Q ++R+
Sbjct: 197 IMNL-KKDYTIVIVTHNMQQAARI 219
|
Length = 258 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTIL-------TNNNKPTKHISK 151
+ G++ A++GPSG GKST+L L L +G L G +L P + + +
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE-VRR 94
Query: 152 RTGFVTQDDILYPHLTVRETLVFCSLLR-LPRTLSTKEKTSIAEAVMAELGLTKCENTII 210
R G V Q +P ++ E + F + + + + S+ +A + + +C++ +
Sbjct: 95 RIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWD----ECKDKL- 148
Query: 211 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTI 270
N +SGG+++R+ IA + I P ++++DEP S LD + ++ T+ L ++ TI
Sbjct: 149 -NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTI 206
Query: 271 VTSMH--QPSSRVYQM 284
V H Q + RV M
Sbjct: 207 VIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 26/209 (12%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
ER L+ I V G ++AI+G +G GK+++++ + G L + + I
Sbjct: 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP---RSDASVV--------I 677
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+V Q ++ + TVR+ ++F S R + T++ + +L L + T
Sbjct: 678 RGTVAYVPQVSWIF-NATVRDNILFGSPFDPERYERAIDVTALQHDL--DL-LPGGDLTE 733
Query: 210 IGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL--GSLVQ 265
IG RG ISGG+++RVS+A + N + I D+P S LD+ ++ L
Sbjct: 734 IGE---RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRG 790
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294
+ + +VT+ S+V D+++++ EG
Sbjct: 791 KTRVLVTNQLHFLSQV----DRIILVHEG 815
|
Length = 1622 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L+ I + G++ I+G G GKS++L + G + L G + +N ++ + T
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVHWSNKNESEPSFEAT 73
Query: 154 GFVTQDDILY----PHL---TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+ + Y P L TV E + F S R + + S+ + L +
Sbjct: 74 RSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDL---LPFGD 130
Query: 207 NTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
T IG RGI SGG+R+R+ +A + N +++ LD+P S LD
Sbjct: 131 QTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 23/213 (10%)
Query: 105 EILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTILTNN------NKPTKHISKRTGF 155
E+ A +GPSG GKST L R++ + G + + + + + G
Sbjct: 32 EVTAFIGPSGCGKSTFLRCF-NRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGM 90
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-TKCENTIIGNSF 214
V Q +P L L + + K+ I E + +GL + + + ++F
Sbjct: 91 VFQKPNPFPKSIYDNVAYGPKLHGLAK--NKKKLDEIVEKSLTSVGLWEELGDRLKDSAF 148
Query: 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK---TIV 271
+SGG+++R+ IA + + P++L++DEP S LD A + + +L+Q K TI+
Sbjct: 149 --ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVAT----NVIENLIQELKKNFTII 202
Query: 272 TSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
H + ++ D+V GR + + E
Sbjct: 203 VVTHS-MKQAKKVSDRVAFFQSGRIVEYNTTQE 234
|
Length = 251 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK 144
+A +R IL+ I + PG + +LG +G+GKST++ +LAG L G G
Sbjct: 319 SAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL------- 371
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
K I + G+ Q + + L E+ L L R L+ +E + G
Sbjct: 372 -AKGI--KLGYFAQHQLEF--LRADES----PLQHLAR-LAPQELEQKLRDYLGGFGFQG 421
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ T F SGGE+ R+ +A + P+LL+LDEPT+ LD
Sbjct: 422 DKVTEETRRF----SGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
|
Length = 638 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 17/200 (8%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ---GHGLTGTIL---TNNNKPTK 147
L I MV ++ A++GPSG GKST L R+H G+ G I+ N N +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCF-NRMHDLYPGNHYEGEIILHPDNVNILSP 90
Query: 148 HISK-----RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ R V Q +P ++ E + + +R + S E+ + A+
Sbjct: 91 EVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEE-RVENALRNAALW 148
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ ++ + +F +SGG+++R+ IA + +P +L+ DEPTS LD A + +
Sbjct: 149 DEVKDRLGDLAF--NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206
Query: 263 LVQRGKT-IVTSMHQPSSRV 281
L + IVT Q ++RV
Sbjct: 207 LKNKVTILIVTHNMQQAARV 226
|
Length = 265 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 62/221 (28%), Positives = 92/221 (41%), Gaps = 56/221 (25%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L + + + A +GPSG GKST L L N T + T
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL----------------NRMNDTIDGCRVT 78
Query: 154 GFVTQD--DILYPHLTV-----RETLVFCSLLRLPRTLSTKEKTSIAEAV-----MAELG 201
G +T D DI P L V R +VF P+ SI E V + L
Sbjct: 79 GKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK--------SIYENVAYGPRIHGLA 130
Query: 202 LTKCE-NTIIGNSFIR----------------GISGGERKRVSIAHEMLINPSLLILDEP 244
+K E + I+ S + G+SGG+++R+ IA + ++P ++++DEP
Sbjct: 131 RSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEP 190
Query: 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVT-SMHQPSSRVYQ 283
S LD A ++ + L Q IVT SM Q ++RV Q
Sbjct: 191 CSALDPIATAKVEELIDELRQNYTIVIVTHSMQQ-AARVSQ 230
|
Length = 267 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 18/156 (11%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-------PTKHISKRTGF 155
PGE L+++G SGSGKST L RL + G G I+ N + + + + F
Sbjct: 349 PGETLSLVGESGSGKSTTGRALL-RLVESQG--GEIIFNGQRIDTLSPGKLQALRRDIQF 405
Query: 156 VTQDDILYPHLTVRETLVFCSL--LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS 213
+ QD Y L R+T+ + LR+ L K + ++ +GL E+
Sbjct: 406 IFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL-LPEHAW---R 459
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ SGG+R+R+ IA + +NP ++I DE S LD
Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
Length = 623 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 4e-07
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 21/205 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTML-------NVLAGRLHQGHGL-TGTILTN 141
E+ +N I+ + + A++GPSG GKST L +++ +G L G + +
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92
Query: 142 NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+N ++ + G V Q +P ++ ++ + + K+ + E V E
Sbjct: 93 SNINVVNLRREIGMVFQKPNPFP------KSIYNNITHALKYAGERRKSVLDEIV--EES 144
Query: 202 LTKC----ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257
LTK E +S +SGG+++R+ IA + + P++L+LDEP S LD + ++
Sbjct: 145 LTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE 204
Query: 258 STLGSLVQR-GKTIVTSMHQPSSRV 281
+ L + IVT Q + RV
Sbjct: 205 ELITELKEEYSIIIVTHNMQQALRV 229
|
Length = 268 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 35/213 (16%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-- 150
+L ++ V GE + I+G +G+GKST++ L L G I + I
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDG-IDISTIPLE 78
Query: 151 ---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
+ QD L+ T+R L P + E+ A V +E GL
Sbjct: 79 DLRSSLTIIPQDPTLFSG-TIRSNLD-------PFDEYSDEEIYGALRV-SEGGLN---- 125
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
+S G+R+ + +A +L P +L+LDE T+ +D + T+
Sbjct: 126 ----------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT-N 174
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300
TI+T H+ + + +DK+LV+ G +
Sbjct: 175 STILTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 49/220 (22%), Positives = 103/220 (46%), Gaps = 25/220 (11%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVL--------AGRLHQGHGLTGTILTNNNKP 145
L+ ++ + ++ A++GPSG GKST L + A R+ G + + +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL---PRTLSTKEKTSIAEAVMAELGL 202
+ +R G V Q +P ++ + + + L++ + + + S+ A + +
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQGYDGDIDERVEESLRRAALWD--- 168
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ ++ + +S +SGG+++R+ IA + +P ++++DEP S LD A ++ +
Sbjct: 169 -EVKDQL--DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE 225
Query: 263 LVQRGKT-IVTSMHQPSSRVYQMFDKVLV-LSEGRCLYFG 300
L + IVT Q ++R+ DK V L+ G + F
Sbjct: 226 LAEEYTVVIVTHNMQQAARIS---DKTAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 62/184 (33%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK 147
I + ++ + V G+ +A++GP+G GK+T+L ++ G+L +
Sbjct: 329 IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL---------------QAD- 372
Query: 148 HISKRTGFVTQDDILY--PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
S R T+ ++ Y H R L EKT VM L K
Sbjct: 373 --SGRIHCGTKLEVAYFDQH---RAEL-------------DPEKT-----VMDNLAEGKQ 409
Query: 206 ENTIIGNS-----------F--------IRGISGGERKRVSIAHEMLINPS-LLILDEPT 245
E + G F ++ +SGGER R+ +A + + PS LLILDEPT
Sbjct: 410 EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA-RLFLKPSNLLILDEPT 468
Query: 246 SGLD 249
+ LD
Sbjct: 469 NDLD 472
|
Length = 635 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 218 ISGGERKRVSIAHEMLINP--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
+SGGE +RV +A E+ P +L ILDEP++GL +L+ + L+ G T++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 276 QPS 278
Sbjct: 148 NLD 150
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 32/216 (14%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTML---NVL----AGRLHQGHGLTGTILTN-NNKP 145
LN ++ + GEI ++G SG+GKST++ N+L +GR+ + G LT + K
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL----VDGQDLTALSEKE 76
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL----G 201
+ ++ G + Q L TV + + P L+ K I V EL G
Sbjct: 77 LRKARRQIGMIFQHFNLLSSRTVFDNVAL------PLELAGTPKAEIKARV-TELLELVG 129
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L+ + +SGG+++RV+IA + NP +L+ DE TS LD A R + L
Sbjct: 130 LSDKADRYPAQ-----LSGGQKQRVAIARALASNPKVLLCDEATSALD-PATTRSILELL 183
Query: 262 SLVQR--GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ R G TIV H+ V ++ D+V V+ GR
Sbjct: 184 KDINRELGLTIVLITHE-MDVVKRICDRVAVIDAGR 218
|
Length = 343 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
++ +L I+ + G +L + G +G+GK+T+L ++AG L+ G + K
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCT 71
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT 208
K+ FV + P+LT+RE ++ + A + L E+
Sbjct: 72 YQKQLCFVGHRSGINPYLTLRENCLY-----------DIHFSPGAVGITELCRLFSLEHL 120
Query: 209 IIGNSFIRG-ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
I + G +S G++++V++ + L +LDEP LD + +++ + +G
Sbjct: 121 I---DYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKG 177
Query: 268 KTIVTSMHQ 276
++ + HQ
Sbjct: 178 GAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 218 ISGGERKRVSIAHEMLI---NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +R+ +A+E+L P+L +LDEPT+GL + L+ L SL +G T+V
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIE 869
Query: 275 H 275
H
Sbjct: 870 H 870
|
Length = 1809 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 54/177 (30%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNKPTKH--ISKRT 153
+ G++ ILGP+G GK+T + +L+ G ++ N +P+ + +
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILS----------GELIPNLGDYEEEPSWDEVLKRFR 144
Query: 154 GFVTQD--------------DILYPHL-------TVRETLVFCSLLRLPRTLSTKEKTSI 192
G Q+ Y L VRE LL+ + ++
Sbjct: 145 GTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE------LLK--KV----DERGK 192
Query: 193 AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ V+ LGL I+ I +SGGE +RV+IA +L + DEPTS LD
Sbjct: 193 LDEVVERLGLEN----ILDRD-ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
|
Length = 590 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-06
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 219 SGGERKRVSIAHEML---INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275
SGGE +RV +A E+ +L ILDEPT+GL +L+ L LV +G T++ H
Sbjct: 824 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883
|
Length = 935 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 48/211 (22%), Positives = 103/211 (48%), Gaps = 15/211 (7%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQ 158
G+ LAI+G +GSGKST+ +LAG + +G +L +++ + S+R + Q
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQ 94
Query: 159 D--DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIR 216
D L P + + L F LRL L +++ + ++GL + +
Sbjct: 95 DPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDH----ASYYPH 148
Query: 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276
++ G+++R+ +A +++ P ++I DE + LD + +L++ + L ++ + Q
Sbjct: 149 MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 277 PSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ + D+VLV+ +G + G ++ ++
Sbjct: 209 HLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 28/187 (14%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162
G++L ++GP+G GKST L +LAG+L G + + + + G Q+
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD----DPPDWDEILDEFRGSELQN--- 77
Query: 163 YPHLT-VRETLVFCS-----LLRLPRT--------LSTKEKTSIAEAVMAELGLTKCENT 208
+ T + E V + +P+ L K++ + ++ +L L
Sbjct: 78 --YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH---- 131
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+ + I +SGGE +RV+IA + + DEP+S LD + L +
Sbjct: 132 -VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 269 TIVTSMH 275
++ H
Sbjct: 191 YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 23/57 (40%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
T++G++ + +SGG+++R+SIA ++ NP +LILDE TS LD+ + Y + T+ +L
Sbjct: 570 ETLVGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625
|
Length = 1466 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 27/78 (34%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSM 274
+ +SGG+++R++IA +L P +L+LDE TS LDS + + T+ + + KTI+T
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 275 HQPSSRVYQMFDKVLVLS 292
H+ +S + DK++V +
Sbjct: 1417 HRIAS--IKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 31/184 (16%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGF 155
++ G+ A +G +GSGKS + LAG L L+G + + T+ + K
Sbjct: 25 TLNAGDSWAFVGANGSGKSALARALAGELPL---LSGERQSQFSHITRLSFEQLQKLVSD 81
Query: 156 VTQD---DILYPH-----LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
Q D+L P T E + + + E + + G+T
Sbjct: 82 EWQRNNTDMLSPGEDDTGRTTAEII-----------QDEVKDPARCEQLAQQFGITA--- 127
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
++ F +S GE ++ + ++ P LLILDEP GLD + +L L SL Q G
Sbjct: 128 -LLDRRFKY-LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185
Query: 268 KTIV 271
T+V
Sbjct: 186 ITLV 189
|
Length = 490 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG 133
+ + ++ GE LAI+G +G GK+T+L L G L G
Sbjct: 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374
|
Length = 530 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 15/219 (6%)
Query: 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR---- 152
I+ V GE++ I+G SGSGKS + G + + L N + + IS++
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85
Query: 153 -----TGFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ QD + L P TV ++ +++ + + K + A ++ ++G+
Sbjct: 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIM--EAIKVHQGGNKKTRRQRAIDLLNQVGIPDP 143
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+ + + + +SGG +RV IA + P LLI DEPT+ LD T +++ L L Q
Sbjct: 144 ASRL--DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ + + + V + K++V+ G+ + GK +
Sbjct: 202 KENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
|
Length = 326 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-05
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG 133
L+G++ V GE+ A+LG +G+GKST++ +L+G G
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG 55
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 35/246 (14%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H 148
+L+G++ VSP E + ++G +G+GKS+MLN L R+ + G I+ ++ K
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVELE--KGRIMIDDCDVAKFGLTD 1307
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV-MAELGLTK--C 205
+ + + Q +L+ TVR + S E+ I + + GL
Sbjct: 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVS 1366
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
E G +F S G+R+ +S+A +L +L+LDE T+ +D V T SL+Q
Sbjct: 1367 EG---GENF----SVGQRQLLSLARALLRRSKILVLDEATASVD-------VRT-DSLIQ 1411
Query: 266 RGKTI-----VTSMHQPSSRVYQMF--DKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSF 318
R TI +M + R+ + DK+LVLS G+ L + E +S S F
Sbjct: 1412 R--TIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVH 1469
Query: 319 PMNPAD 324
PA+
Sbjct: 1470 STGPAN 1475
|
Length = 1495 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 218 ISGGERKRVSIAHEML---INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274
+SGGE +R+ +A E+ +L ILDEPT+GL +L+ L LV +G T+V
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 275 H 275
H
Sbjct: 890 H 890
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 25/198 (12%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY 163
GE++ ++G +GSGKST+ +L G L+Q +G IL + +S +D Y
Sbjct: 349 GELVFLIGGNGSGKSTLAMLLTG-LYQPQ--SGEILLDGKP----VSAEQ----LED--Y 395
Query: 164 PHLTVRETLVFCSLLRLPRTLSTKEKTS--IAEAVMAELGLTKCENTIIGNSFIRGISGG 221
L + VF + L + K S + E + L L + G +S G
Sbjct: 396 RKLF---SAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTG 452
Query: 222 ERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV--STLGSLVQR-GKTIVTSMHQPS 278
++KR+++ +L +L+LDE + D A+R L L++ GKTI H
Sbjct: 453 QKKRLALLLALLEERDILVLDEWAA--DQDPAFRREFYQVLLPLLKEQGKTIFAISH--D 508
Query: 279 SRVYQMFDKVLVLSEGRC 296
+ D++L + G+
Sbjct: 509 DHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 31/197 (15%)
Query: 105 EILAILGPSGSGKSTMLNVLAGRLH---QGHGLTGTIL-TNNNKPTKHIS-----KRTGF 155
+I A +GPSG GKST+L RL+ G + G + N + +R G
Sbjct: 37 QITAFIGPSGCGKSTILRCF-NRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGM 95
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKE------KTSIAEAVMAELGLTKCENTI 209
V Q +P ++ + + + R K + S+ +A + + K + +
Sbjct: 96 VFQKPNPFPK-SIYDNIAYG-----ARINGYKGDMDELVERSLRQAALWDEVKDKLKQS- 148
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
G S +SGG+++R+ IA + + P ++++DEP S LD + R+ + L ++ T
Sbjct: 149 -GLS----LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YT 202
Query: 270 IVTSMH--QPSSRVYQM 284
I+ H Q ++RV M
Sbjct: 203 IIIVTHNMQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 28/210 (13%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L I ++ G+I+ I+G +G GKST+ + G L+ G IL + +
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG-LYIPQ--EGEILLDGAAVSAD----- 409
Query: 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEK----TSIAEAVMAELGLT-KCENT 208
++DD Y L + +F + E A+ + L + K +
Sbjct: 410 ---SRDD--YRDLF---SAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIE 461
Query: 209 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV---STLGSLVQ 265
G S +S G++KR+++ L + +L+ DE + D A++ L L +
Sbjct: 462 DGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA--DQDPAFKRFFYEELLPDLKR 519
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+GKTI+ H + +++ D+++ L+ G
Sbjct: 520 QGKTIIIISH--DDQYFELADQIIKLAAGC 547
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 23/225 (10%)
Query: 101 VSPGEILAILGPSGSGKSTML-------NVLAGRLHQGH-GLTGTILTNNNKPTKHISKR 152
+ EI +GPSG GKST+L +++ G +GH G + + +
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212
G V Q + +++ + + F LRL R K + + V L + +
Sbjct: 91 IGMVFQQPNPFS-MSIFDNVAFG--LRLNRY-----KGDLGDRVKHALQGAALWDEVKDK 142
Query: 213 SFIRGIS--GGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTI 270
+ G+S GG+++R+ IA + P +L+LDEP S LD A R+ + L ++ TI
Sbjct: 143 LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTI 201
Query: 271 --VTSMHQPSSRVYQM--FDKVLVLSEGRCLYFGKGSEAMSYFES 311
VT Q + RV F V + R Y + F++
Sbjct: 202 ALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 62/264 (23%), Positives = 105/264 (39%), Gaps = 41/264 (15%)
Query: 55 IKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSG 114
+ I+N +KE RI+ D K + L+ I+ G+++ ++G +G
Sbjct: 5 VNIKNVTKE----YRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGING 60
Query: 115 SGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI---LYPHLTVRET 171
SGKST+ N++ G L PT R G V+ I L LT E
Sbjct: 61 SGKSTLSNIIGGSL---------------SPTVGKVDRNGEVSVIAISAGLSGQLTGIEN 105
Query: 172 LVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFI----RGISGGERKRV 226
+ F + R I E +ELG FI + S G R ++
Sbjct: 106 IEFKMLCMGFKRKEIKAMTPKIIE--FSELG-----------EFIYQPVKKYSSGMRAKL 152
Query: 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286
+ + +NP +L++DE S D T A + + + ++ KTI H +V Q
Sbjct: 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN-LGQVRQFCT 211
Query: 287 KVLVLSEGRCLYFGKGSEAMSYFE 310
K+ + G+ +G+ + + +E
Sbjct: 212 KIAWIEGGKLKDYGELDDVLPKYE 235
|
Length = 264 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 33/197 (16%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL 166
+A++GP+G GKST+L +++G L +GT+ + R +Q + L
Sbjct: 538 IAMVGPNGIGKSTILKLISGELQP---SSGTVF-------RSAKVRMAVFSQHHVDGLDL 587
Query: 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG---ISGGER 223
+ LL + R + + A + G+T GN ++ +SGG++
Sbjct: 588 SSN------PLLYMMRCFPGVPEQKL-RAHLGSFGVT-------GNLALQPMYTLSGGQK 633
Query: 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVT-SMHQPSSRVY 282
RV+ A P +L+LDEP++ LD A L+ L L Q G +V+ H S V
Sbjct: 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL-VLFQGGVLMVSHDEHLISGSV- 691
Query: 283 QMFDKVLVLSEGRCLYF 299
D++ V+SEG+ F
Sbjct: 692 ---DELWVVSEGKVTPF 705
|
Length = 718 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 213 SFIRGISGGERKRVSIA---HEMLINP-SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK 268
+SGGE++ ++A + P L ILDE GLD L + + +G
Sbjct: 73 FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGA 132
Query: 269 TIVTSMHQP 277
++ H P
Sbjct: 133 QVIVITHLP 141
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-05
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+SGGER+RV++ +L P +L+LDEPT+ LD
Sbjct: 164 LSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 27/232 (11%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKST-------MLNVLAGRLHQGHGLTGTILTNNN 143
+ +L + + PG+ + I G +GSGKS+ M+++ G++ + G ++
Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV----IDGIDIS--K 87
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETL---VFCSLLRLPRTLSTKEKTSIAEAVMAEL 200
P + R + QD IL+ ++R L C+ RL L + ++ +++ L
Sbjct: 88 LPLHTLRSRLSIILQDPILFSG-SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGL 146
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
E G +F S G+R+ +A + S+LI+DE T+ +D A ++ +
Sbjct: 147 DAVVTEG---GENF----SVGQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKV 198
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312
+T+VT H+ S+ + D VLVLS G + ++ + V
Sbjct: 199 VMTAFADRTVVTIAHRVSTILDA--DLVLVLSRGILVECDTPENLLAQEDGV 248
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 39/222 (17%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
+ +L I V +A++G +GSGKST+ ++L G G I + +P +
Sbjct: 353 DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRL-DGRPLSSL 408
Query: 150 SKRT-----GFVTQD-----DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV-MA 198
S V QD D ++T L R +S ++ E V +A
Sbjct: 409 SHSVLRQGVAMVQQDPVVLADTFLANVT------------LGRDISEEQVWQALETVQLA 456
Query: 199 EL--GLTKCENTII---GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253
EL L T + GN+ +S G+++ +++A ++ P +LILDE T+ +DS
Sbjct: 457 ELARSLPDGLYTPLGEQGNN----LSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512
Query: 254 YRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ L + V+ T+V H+ S+ V D +LVL G+
Sbjct: 513 QAIQQAL-AAVREHTTLVVIAHRLSTIVEA--DTILVLHRGQ 551
|
Length = 592 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 193 AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
A +++A L T +F SGG R R+++A + I P LL+LDEPT+ LD A
Sbjct: 324 AASILAGLSFTPEMQVKATKTF----SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA 379
Query: 253 AYRLVSTLGSLVQRGKTIVTSMH 275
L + L++ KT + H
Sbjct: 380 VLWLETY---LLKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 22/220 (10%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN--------- 143
++ ++ ++ GEI ++G SGSGKS + + G +T + ++
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81
Query: 144 KPTKHISKRTGFVTQDDI--LYPHLTVRETLV-----FCSLLRLPRTLSTKEKTSIAEAV 196
+ K + + Q+ L P V L+ + R + +++ +I +
Sbjct: 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIE--L 139
Query: 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
+ +G+ ++ I S+ ++ GE ++V IA + P LLI DEPT+ ++ T ++
Sbjct: 140 LHRVGIKDHKD--IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQI 197
Query: 257 VSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
L L Q TI+ H + Q DK+ VL G+
Sbjct: 198 FRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCGQ 236
|
Length = 330 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 34/225 (15%)
Query: 85 TAKIQE--RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN 142
TAK E +L I+ +SPG+ + +LG +GSGKST+L+ L+ + ++ N
Sbjct: 9 TAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWN 68
Query: 143 NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE--AVMAEL 200
+ P + K G + Q + +F R + L K S E V E+
Sbjct: 69 SVPLQKWRKAFGVIPQ-----------KVFIFSGTFR--KNLDPYGKWSDEEIWKVAEEV 115
Query: 201 GLT--------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
GL + + ++ + +S G ++ + +A +L +L+LDEP++ LD
Sbjct: 116 GLKSVIEQFPGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPIT 173
Query: 253 AYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD--KVLVLSEGR 295
+ TL T++ S H R+ M + + LV+ E +
Sbjct: 174 YQVIRKTLKQAFA-DCTVILSEH----RIEAMLECQRFLVIEENK 213
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 12/129 (9%)
Query: 486 IFMKER-----ASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQT 540
+F K+R +TL ++ + +P+ +I V+++I Y+ GF PE F +
Sbjct: 598 VFYKQRDLLFHPPWTFTLPTFLLG-----IPISIIESVVWVVITYYSIGFAPEASRFFKQ 652
Query: 541 LLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVHK--MPSCIAWIK 598
LL++ ++ G+ + ++ A+T + +L L GG+ + K +P+ W
Sbjct: 653 LLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAY 712
Query: 599 YISSTYYNY 607
++S Y +
Sbjct: 713 WVSPLSYGF 721
|
Length = 1470 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 214 FIRGISGGERKRVSIA---HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTI 270
I+GIS G ++ +++ L SLL++DEP +GL +LV L L ++G +
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 271 VTSMHQPS 278
+ + H P
Sbjct: 246 IFTTHSPL 253
|
Length = 256 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 19/107 (17%)
Query: 215 IRGISGGERKRVSIA-----HEMLINPS---LLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
I+ +SGGER S+A ++L + LL LDEP LD +L L L+
Sbjct: 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD 872
Query: 267 GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVG 313
G+ I+ H + + D + + K S E V
Sbjct: 873 GRQIIIISHVEELK--ERADVRIRV---------KKDGGRSRVEVVS 908
|
Length = 908 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRL 128
G+V GE++ I+GP+G+GK+T + +LAG+L
Sbjct: 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQL 49
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT-----GF 155
V P I A++G +G+GKST+L L G + +G+IL + SK
Sbjct: 21 VRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISM 77
Query: 156 VTQDDILYPHLTVRETLVFCSLLRLPRT---LSTKEKTSIAEAVMAELGLTKCENTIIGN 212
V Q+ L +V + + L R P + + +A+ EL + +
Sbjct: 78 VHQELNLVLQRSVMDNM---WLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVAT 134
Query: 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVT 272
+S + + + IA N ++I+DEPTS L L + + L +RG IV
Sbjct: 135 -----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVY 189
Query: 273 SMHQPSSRVYQMFDKVLVLSEGR 295
H+ ++Q+ D++ +L +G+
Sbjct: 190 ISHK-MEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 50/244 (20%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H 148
+L+G++ +SP E + I+G +G+GKS+MLN L R+ + G IL + +K
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALF-RIVELE--RGRILIDGCDISKFGLMD 1310
Query: 149 ISKRTGFVTQDDILYPHLTVRETL----------VFCSLLRLPRTLSTKEKTSIAEAVMA 198
+ K G + Q +L+ TVR L ++ SL R + + +A ++
Sbjct: 1311 LRKVLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369
Query: 199 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
E G EN S G+R+ +S+A +L +L+LDE T+ +D V
Sbjct: 1370 EAG----EN----------FSVGQRQLLSLARALLRRSKILVLDEATAAVD-------VR 1408
Query: 259 TLGSLVQRGKTI-----VTSMHQPSSRVYQMF--DKVLVLSEGRCLYFGKGSEAMSYFES 311
T +L+Q KTI +M + R+ + D++LVL GR + F +S S
Sbjct: 1409 T-DALIQ--KTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGS 1465
Query: 312 VGFS 315
FS
Sbjct: 1466 A-FS 1468
|
Length = 1622 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 8e-04
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 14/51 (27%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTG 154
G+ ++G SG GKST+LN L L T IS++ G
Sbjct: 85 GKTSVLVGQSGVGKSTLLNALLPELVL--------------ATGEISEKLG 121
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 18/92 (19%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGL----TGTIL-TNNNKPTKHISKRTGFVTQDDI 161
+ ILGP G+GKST LA +L + GL TG IL + T+ + ++ + ++
Sbjct: 3 ILILGPPGAGKST----LAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGEL 58
Query: 162 L---YPHLTVRETLVFCS------LLRLPRTL 184
+ + V+E L L PRTL
Sbjct: 59 VPDEIVNGLVKERLDEADCKAGFILDGFPRTL 90
|
Length = 178 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 9e-04
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 27/180 (15%)
Query: 82 QGSTAKIQE--RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL 139
QG TAK E R +L ++ V G+ + +LG +GSGKST+L+ L L + +
Sbjct: 1221 QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGV 1280
Query: 140 TNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE--AVM 197
+ N+ + K G + Q + +F R + L E+ S E V
Sbjct: 1281 SWNSVTLQTWRKAFGVIPQ-----------KVFIFSGTFR--KNLDPYEQWSDEEIWKVA 1327
Query: 198 AELGLT--------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
E+GL K + ++ ++ +S G ++ + +A +L +L+LDEP++ LD
Sbjct: 1328 EEVGLKSVIEQFPDKLDFVLVDGGYV--LSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Query: 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+SGGER RV +A + ++L+LDEPT+ LD V TL +L
Sbjct: 444 LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD-------VETLRAL 482
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.001
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 13/48 (27%)
Query: 219 SGGERKRVSIAHEMLI---NPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
SGGER R+ +A L N +L+LDEPT+ LD V TL +L
Sbjct: 447 SGGERNRLHLAK-TLKQGGN--VLLLDEPTNDLD-------VETLRAL 484
|
Length = 556 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.001
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHG 133
PGE++ I+GP GSGK+T+ LA L G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG 31
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQ 130
G+ + G SG GKST+LN L L
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPELDL 61
|
Length = 161 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 75 STSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL 134
+ S+ D +G + +S G+ +A+LG SG GKST++N L G Q
Sbjct: 176 AVSALDGEGLDV----------LAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ---K 222
Query: 135 TGTILTNNNK 144
TG + +++K
Sbjct: 223 TGAVREDDSK 232
|
Length = 356 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 76 TSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT 135
SS +D A L + G++ G + + G G+GKST+ LA + G
Sbjct: 9 PSSAED--LDAPPPPLRWL--VKGLLPRGGLTLLAGAPGTGKSTLALDLAAAVATGRPFL 64
Query: 136 G 136
G
Sbjct: 65 G 65
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 0.002
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 219 SGGERKRVSIAHEMLINP---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
SGGE +RV +A E+ +L ILDEPT+GL +L+ L LV +G T+V
Sbjct: 832 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVV 887
|
Length = 943 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 37/215 (17%)
Query: 101 VSPGEILAILGPSGSGKSTMLNVLAG--RLHQGH-GLTGTILTNNNKPTKHISKRTGFV- 156
V GEI+ + G G+G+S ++ +L G R G L G + + P I R G +
Sbjct: 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS-PRDAI--RAGIML 332
Query: 157 -----TQDDILYPHLTVRETLVFCS---LLRLPRTLSTKEKTSIAEAVMAELGL-TKCEN 207
+ I+ P +V + + + LR ++ + + A+ + L + T
Sbjct: 333 CPEDRKAEGII-PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391
Query: 208 TIIGNSFIRGISGGERKRVSI----AHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+I N +SGG +++ + + +M +++LDEPT G+D A + + + + L
Sbjct: 392 QLIMN-----LSGGNQQKAILGRWLSEDM----KVILLDEPTRGIDVGAKHEIYNVIYEL 442
Query: 264 VQRGKTIVTSMHQPSS---RVYQMFDKVLVLSEGR 295
+G ++ SS V + D+++V+ EGR
Sbjct: 443 AAQGVAVLFV----SSDLPEVLGVADRIVVMREGR 473
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.004
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126
+ IL I+ PG + +LG +G+GKST+L ++AG
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 55
|
Length = 556 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 679 | |||
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.98 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.98 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.95 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.92 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.89 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.89 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.89 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.89 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.84 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.84 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.83 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.83 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.82 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.82 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.81 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.81 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.8 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.8 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.79 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.79 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.78 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.78 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.77 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.74 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.74 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.73 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.72 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.71 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.68 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.66 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.63 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.56 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.56 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.51 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.47 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.45 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.44 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.43 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.38 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.36 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.34 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.34 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.34 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.28 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.26 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.25 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.25 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.24 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.24 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.24 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.23 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.23 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.21 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.21 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.19 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.18 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.17 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.15 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.13 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.11 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.09 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.07 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.05 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.04 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.03 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.0 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.98 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.94 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.92 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.86 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.85 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.85 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.83 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.8 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.75 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.74 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.74 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.69 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.64 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.64 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.6 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.57 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.55 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.53 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.52 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.52 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.51 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.49 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.49 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.45 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.43 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.41 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.4 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.26 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.25 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.23 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.15 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.14 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.14 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.12 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.1 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.08 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.08 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.07 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 98.06 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.99 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 97.99 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.98 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.97 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.93 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 97.93 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.9 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.89 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.88 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.87 |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-112 Score=978.42 Aligned_cols=655 Identities=75% Similarity=1.179 Sum_probs=534.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccccCccccCCCCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccC
Q 005754 1 MPGFDSVETPNGDLTDCPYQSNDCSPARDLLHQLPSLMSSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTD 80 (679)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (679)
||-||.||..| |-|-.|.+-.|-+ -+...++.....+++++|.|++|+++........+....+. .....
T Consensus 1 ~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~~ 70 (659)
T PLN03211 1 MPVFDGVENQN----DGPDRSKPPSQDS--RDLPSLLLSSCYPITLKFMDVCYRVKFENMKNKGSNIKRIL----GHKPK 70 (659)
T ss_pred CCCcccccCCC----CCCCCCCcccCCc--hhhhhhhcCCCCceEEEEEeEEEEEccCCCccccccccccc----ccccc
Confidence 89999999877 3455555444333 45556666777899999999999997553111111111111 11123
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~ 160 (679)
.++++++++++++|+|+|+++++||++||+||||||||||||+|+|+.+++ ..+|+|.+||++.....++++|||+|++
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECccc
Confidence 455677888899999999999999999999999999999999999998763 3689999999876555567799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||+||+.|.+.++.+...++++++++++++++.+||++++|+.+|++.+++|||||||||+||++|+.+|+||+
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 99999999999999887776655566677788999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCC
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPM 320 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~ 320 (679)
|||||+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|++++.|+++++.+||+++|++||++.
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~ 309 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPM 309 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCC
Confidence 99999999999999999999999988999999999998778999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCCcccCCCccccccchHHHHHHHHhhhhhHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCC
Q 005754 321 NPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNN 400 (679)
Q Consensus 321 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (679)
|||||++|+++.....+...+.+.+...+.+.+.|++...++.................. .. ...+.. + ...
T Consensus 310 NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~-~--~~~ 381 (659)
T PLN03211 310 NPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFV----GS-ASTKEH-R--SSD 381 (659)
T ss_pred CHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhh----hc-cccccc-c--cCC
Confidence 999999999875321111111122223345556665433332222211110000000000 00 000000 0 011
Q ss_pred cccCCCHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 401 VIGFATWLNQFSILLHRSLKERKHESLNTLRVFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAF 480 (679)
Q Consensus 401 ~~~~~~~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~r~g~lf~~~~~~~~~~~~~~i~~f 480 (679)
..+.++||+|+.+|++|+++++|++.+...|+++++++|+++|++||+++..++++|.|++||+++++++.+++++++.|
T Consensus 382 ~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f 461 (659)
T PLN03211 382 RISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVF 461 (659)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12457899999999999999989888888999999999999999999998889999999999999998888888999999
Q ss_pred HHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 481 PQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGA 560 (679)
Q Consensus 481 ~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa 560 (679)
+.||++|+||+.+|+|++++|++||+++|+|+.++.+++|++|+|||+||++++.+|++|++++++..++++++|+++|+
T Consensus 462 ~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a 541 (659)
T PLN03211 462 PQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGA 541 (659)
T ss_pred HHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhcccCCChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCC---CCcccc
Q 005754 561 IIMDAKQASTIVTVTMLAFVLTGGYYVHKMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRH---GSSRDA 637 (679)
Q Consensus 561 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~---~~~c~~ 637 (679)
++|+.++|+.+++++++++++|+||++++||+||+|++|+||++|+|||++.|||++.+.+.+.++|+.+. ...|..
T Consensus 542 ~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~ 621 (659)
T PLN03211 542 AIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF 621 (659)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999998764222235675421 233531
Q ss_pred CcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 638 SCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
.....++..+.|.|+++|++++++||+++|++|+++|
T Consensus 622 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 622 ----VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ----chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1222233357899999999999999999999999876
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-105 Score=913.10 Aligned_cols=583 Identities=41% Similarity=0.699 Sum_probs=501.3
Q ss_pred cCCCCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcH
Q 005754 38 MSSCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGK 117 (679)
Q Consensus 38 ~~~~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGK 117 (679)
.....+++++|+|++++.+.+.+ ..+++|+|||++++|||++||||||||||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~k~iL~~vsg~~~~Gel~AimG~SGsGK 69 (613)
T KOG0061|consen 18 LPYLEPVKLSFRNLTLSSKEKSK----------------------------KTKTILKGVSGTAKPGELLAIMGPSGSGK 69 (613)
T ss_pred ccccccceeEEEEEEEEecCCCC----------------------------ccceeeeCcEEEEecCeEEEEECCCCCCH
Confidence 34567788999999999864321 24789999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 005754 118 STMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV 196 (679)
Q Consensus 118 STLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~ 196 (679)
|||||+|+|+...+...+|+|++||++.. +.+++.+|||.|||.++|+|||+|++.|++.+|+|...++++++++|+++
T Consensus 70 tTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~v 149 (613)
T KOG0061|consen 70 TTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEV 149 (613)
T ss_pred HHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999998865468999999996654 46788999999999999999999999999999999988999999999999
Q ss_pred HHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 197 MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 197 l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
++++||.+++|+++|+...||+||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+||
T Consensus 150 i~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQ 229 (613)
T KOG0061|consen 150 ISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQ 229 (613)
T ss_pred HHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCChHHHHHHHhcCCcccCCCccccccchHHHHHHHHh
Q 005754 277 PSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASYN 356 (679)
Q Consensus 277 ~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (679)
|+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+++.. +...+.............++
T Consensus 230 Pss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~---~~~~~~~~~~~~~~~~~~~~ 306 (613)
T KOG0061|consen 230 PSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD---SGTRELEEAVRIAKLINKFS 306 (613)
T ss_pred CcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC---CCchhHHhHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999998843 11100000011111111111
Q ss_pred hhhhHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHHHH
Q 005754 357 TLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQV 435 (679)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~ 435 (679)
. .....+....... .... . .+ .......+||.|+++|++|.+++ +|++.+...|+++.
T Consensus 307 ~--~~~~~~~~~~~~~------------~~~~---~--~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~ 365 (613)
T KOG0061|consen 307 Q--TDNLKKTLEALEK------------SLST---S--KK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQS 365 (613)
T ss_pred c--cchhhhhHHHHhh------------hccc---c--cc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHH
Confidence 0 0000000000000 0000 0 00 01111689999999999999998 67788889999999
Q ss_pred HHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q 005754 436 IAASLLSGIMWWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVE 513 (679)
Q Consensus 436 i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~ 513 (679)
+++++++|++||+.+. .++++|.|++||++.++.+.+++++++.|++||++|.||+.+|+|+.++||+|++++++|+.
T Consensus 366 ~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~ 445 (613)
T KOG0061|consen 366 LVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFL 445 (613)
T ss_pred HHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHH
Confidence 9999999999999976 67889999999999999889998899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CCh
Q 005754 514 LILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMP 591 (679)
Q Consensus 514 ~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip 591 (679)
++.+++|.+|+|||+|+++++.+|++|++++++..++++++|+++++++||...|+.++++++++|++|+||+++ +||
T Consensus 446 ~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip 525 (613)
T KOG0061|consen 446 LVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIP 525 (613)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCcccccccccCC--CCchHHHHHHHHHHHHHHHH
Q 005754 592 SCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQ--ISPLVSIGAFLSMFVGYRLL 669 (679)
Q Consensus 592 ~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~~~~~~~~~~~--~~~~~~~~iL~~~~~~f~~l 669 (679)
.||+|++|+|+++|+|||+++|||.+ . ...|.......|. ..+...+..+++ .+.|.|+.++++++++||++
T Consensus 526 ~~~~w~~~~S~~ry~~e~l~~n~~~~-~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il 599 (613)
T KOG0061|consen 526 KYFRWISYLSYFRYAFEALLINQFSG-G----SSRCFLSGNLCCE-STGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVL 599 (613)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc-c----ccccccCcCCccc-ccHHHHHHhcCCcccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 2 2345432113444 333445666665 57999999999999999999
Q ss_pred HHHHHhhcc
Q 005754 670 AYLALRRLK 678 (679)
Q Consensus 670 ~~~~L~~i~ 678 (679)
+|++|++..
T Consensus 600 ~y~~L~~~~ 608 (613)
T KOG0061|consen 600 GYLALRFRV 608 (613)
T ss_pred HHHHHHhhc
Confidence 999999853
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-101 Score=889.67 Aligned_cols=567 Identities=32% Similarity=0.550 Sum_probs=486.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~~l~~~l 166 (679)
.+++++|+|+|+++++||+++|+|||||||||||++|+|+.+++...+|+|.+||.+.. ...++.+|||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34678999999999999999999999999999999999998764446899999998764 35677899999999999999
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc-cCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS-FIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
||+|||.|++.++.+...++++++++++++++.+||.+++|+++|+. ..++|||||||||+||+||+.+|++++|||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 99999999998888776777788889999999999999999999975 36899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCChHHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADF 325 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~n~ad~ 325 (679)
+|||+.++..+++.|++++++|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||++.||+||
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~ 274 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 99999999999999999998899999999999888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcccCCCccccccchHHHHHHHHhhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccC
Q 005754 326 LLDLANGVYHLDGVSEREKPNVKSSIVASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGF 404 (679)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (679)
++|+++.... .+.+..+..+++.+.|+++. +.+........... ........ .. .....+.
T Consensus 275 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---------~~~~~~~~-~~----~~~~~~~ 336 (617)
T TIGR00955 275 YVQVLAVIPG----SENESRERIEKICDSFAVSDIGRDMLVNTNLWSGK---------AGGLVKDS-EN----MEGIGYN 336 (617)
T ss_pred HHHHhhcCcc----cccchHHHHHHHHHHHhcchhhHHHHHHhhhhhcc---------cccccccc-cc----ccccccC
Confidence 9999874211 11111223344555554432 11111111100000 00000000 00 0112457
Q ss_pred CCHHHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 405 ATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFP 481 (679)
Q Consensus 405 ~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~ 481 (679)
.+|+.|+.+|++|++++ +|++.+...|+++.+++|+++|++||+++. +++++|.|++|++++++++.+++.+++.|+
T Consensus 337 ~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~ 416 (617)
T TIGR00955 337 ASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFT 416 (617)
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999986 688888899999999999999999999876 689999999999999888888888899999
Q ss_pred HhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005754 482 QERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAI 561 (679)
Q Consensus 482 ~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~ 561 (679)
.||++|+||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++..||+|++++++..++++++|++++++
T Consensus 417 ~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~ 496 (617)
T TIGR00955 417 AELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCA 496 (617)
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC-CCCCccccC
Q 005754 562 IMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD-RHGSSRDAS 638 (679)
Q Consensus 562 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~-~~~~~c~~~ 638 (679)
+|+..+|+.+++++++++++|+||+++ +||+||+|++|+||++|++||++.|||.+.+ ..+|++ +.+..|...
T Consensus 497 ~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~----~~~c~~~~~~~~c~~~ 572 (617)
T TIGR00955 497 FSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD----NIECTSANTTGPCPSS 572 (617)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCc----cccccCcCcCCCCCcC
Confidence 999999999999999999999999998 9999999999999999999999999999864 235753 223458644
Q ss_pred cccccccccCC--CCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005754 639 CKFVEEDIVGQ--ISPLVSIGAFLSMFVGYRLLAYLALRRL 677 (679)
Q Consensus 639 ~~~~~~~~~~~--~~~~~~~~iL~~~~~~f~~l~~~~L~~i 677 (679)
+ ...++.+|+ ++.|.++++|+++.++|++++|++||+.
T Consensus 573 g-~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 573 G-EVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred h-HHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 345666676 4789999999999999999999999973
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-98 Score=918.83 Aligned_cols=582 Identities=26% Similarity=0.435 Sum_probs=492.1
Q ss_pred CCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHH
Q 005754 41 CYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120 (679)
Q Consensus 41 ~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTL 120 (679)
..|++++|+||+|+|+.+...+ +.+..++++++|+|||++++|||+++|+||||||||||
T Consensus 863 ~~~~~~~~~~v~y~v~~~~~~~--------------------~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTL 922 (1470)
T PLN03140 863 FTPLAMSFDDVNYFVDMPAEMK--------------------EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTL 922 (1470)
T ss_pred CCcceEEEEEEEEEEccCcccc--------------------ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHH
Confidence 4567899999999997543210 11223345689999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 005754 121 LNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE 199 (679)
Q Consensus 121 L~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~ 199 (679)
||+|+|+.++ +..+|+|.+||.+... ..++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.
T Consensus 923 L~~LaG~~~~-g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~ 1001 (1470)
T PLN03140 923 MDVLAGRKTG-GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMEL 1001 (1470)
T ss_pred HHHHcCCCCC-CcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999754 2368999999987543 4567899999999999999999999999888776656667777889999999
Q ss_pred cCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 200 LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 200 lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.
T Consensus 1002 lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~ 1081 (1470)
T PLN03140 1002 VELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081 (1470)
T ss_pred CCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 99999999999987778999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhCCeEEEEeC-CeEEEecCh----hhHHHHHHHc-CC-CCCCCCChHHHHHHHhcCCcccCCCccccccchHHHHH
Q 005754 280 RVYQMFDKVLVLSE-GRCLYFGKG----SEAMSYFESV-GF-SPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIV 352 (679)
Q Consensus 280 ~i~~~~D~v~lL~~-G~iv~~G~~----~~~~~~f~~~-g~-~~~~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (679)
++++.||++++|++ |+++|+|++ +++.+||+++ |+ .||+..|||||++|+++... + .....+++
T Consensus 1082 ~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~--~-------~~~~~d~~ 1152 (1470)
T PLN03140 1082 DIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAA--E-------VKLGIDFA 1152 (1470)
T ss_pred HHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccc--c-------ccccchHH
Confidence 78999999999996 899999996 6899999997 66 49999999999999986321 0 01123466
Q ss_pred HHHhhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHH
Q 005754 353 ASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTL 430 (679)
Q Consensus 353 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~ 430 (679)
+.|+++. +++..+...+... ........ .....+.++||+|+++|++|++++ ||+|.++..
T Consensus 1153 ~~~~~s~~~~~~~~~~~~~~~-------------~~~~~~~~----~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~ 1215 (1470)
T PLN03140 1153 EHYKSSSLYQRNKALVKELST-------------PPPGASDL----YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLV 1215 (1470)
T ss_pred HHHhccHHHHHHHHHHHHhcc-------------CCCCcccc----ccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHH
Confidence 7776542 2222222221110 00000000 012246789999999999999986 799999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHH
Q 005754 431 RVFQVIAASLLSGIMWWHSDF-----REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSR 505 (679)
Q Consensus 431 r~~~~i~~~ll~G~~f~~~~~-----~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~ 505 (679)
|+++++++|+++|++||+++. .++++|.|++|+.+++.++..+.+.++.|..||++|+|||++|+|++++|++|+
T Consensus 1216 r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~ 1295 (1470)
T PLN03140 1216 RFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQ 1295 (1470)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 999999999999999999875 367889999999999888777777789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhc
Q 005754 506 IIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGY 585 (679)
Q Consensus 506 ~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf 585 (679)
+++|+|+.++.+++|.+|+|||+||++++..||+|++++++..++++++|+++++++|+.++|+.+++++++++++|+||
T Consensus 1296 ~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf 1375 (1470)
T PLN03140 1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF 1375 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCC---CCccccCcccccccccCC--CCchHHHHH
Q 005754 586 YVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRH---GSSRDASCKFVEEDIVGQ--ISPLVSIGA 658 (679)
Q Consensus 586 ~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~---~~~c~~~~~~~~~~~~~~--~~~~~~~~i 658 (679)
++| +||+||+|++|+||++|+++|++.|||.+.+ .+|+++. +..| +....+.+|+ ++.|.++++
T Consensus 1376 ~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~-----~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~i 1446 (1470)
T PLN03140 1376 FIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVE-----DTIKVPGGAPDPTI----KWYIQDHYGYDPDFMGPVAAV 1446 (1470)
T ss_pred ccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCC-----CcccCCCCCCCCcH----HHHHHHhcCcCcccccchhhh
Confidence 998 9999999999999999999999999999863 3343322 1122 1223455665 468999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 005754 659 FLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 659 L~~~~~~f~~l~~~~L~~i~ 678 (679)
+++++++|++++++++|+++
T Consensus 1447 l~~~~~~f~~~~~~~~~~~~ 1466 (1470)
T PLN03140 1447 LVGFTVFFAFIFAFCIRTLN 1466 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-98 Score=920.40 Aligned_cols=579 Identities=26% Similarity=0.379 Sum_probs=480.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc---cccCcEEEEecCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK---HISKRTGFVTQDDILY 163 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~ 163 (679)
..+++||+|||+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||.+..+ ..++.++||+|+|.++
T Consensus 71 ~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 71 TKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred CCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 34578999999999999999999999999999999999987421 2368999999987532 3456799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCC----CCCHHHHHHH-HHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 164 PHLTVRETLVFCSLLRLPR----TLSTKEKTSI-AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+||+||+.|++.++.|. ..++++..++ ++++++.+||++++|+++|++.+++|||||||||+||++|+.+|+|
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 9999999999988876543 2344444434 5778999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCC
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPS 317 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~ 317 (679)
++|||||+|||+.++.++++.|++++++ |+|||+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p 310 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999874 999999999998889999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhcCCcccCC-CccccccchHHHHHHHHhhhh-hHHHHHHHHhhccch----hhhhhhcCCCCCCCCcc
Q 005754 318 FPMNPADFLLDLANGVYHLDG-VSEREKPNVKSSIVASYNTLL-APKVRAACMEATTLP----RREALLTGSSSSSHSSE 391 (679)
Q Consensus 318 ~~~n~ad~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 391 (679)
+++|||||++++++....... ..+...+...+++.++|+++. +++..++++...... ..+.... ..... .
T Consensus 311 ~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~ 386 (1394)
T TIGR00956 311 DRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE--SHVAK--Q 386 (1394)
T ss_pred CCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH--HHHhh--h
Confidence 999999999999874311000 011223445677888887653 233333332211100 0000000 00000 0
Q ss_pred cccccCCCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHH
Q 005754 392 EHTRSHNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSDF--REVQDRLGLFFFISVFW 468 (679)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~ 468 (679)
. +.......+..|||+|+++|++|++++ +||+.....|+++++++|+++|++||+++. +++++|.|++||++++.
T Consensus 387 ~--~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~ 464 (1394)
T TIGR00956 387 S--KRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFN 464 (1394)
T ss_pred c--ccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 0 000112246789999999999999986 688888899999999999999999999876 68999999999999998
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHH
Q 005754 469 GVLPSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYV 548 (679)
Q Consensus 469 ~~~~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~ 548 (679)
++.++ ..+..++.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..
T Consensus 465 ~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~ 543 (1394)
T TIGR00956 465 AFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICT 543 (1394)
T ss_pred HHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHH
Confidence 87764 56777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccc
Q 005754 549 LVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLG 626 (679)
Q Consensus 549 ~~~~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~ 626 (679)
+++.++++++|+++||.++|+.+++++++++++|+||+++ +||+||+|++|+||++|||||++.|||.+.+ ++
T Consensus 544 ~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~-----~~ 618 (1394)
T TIGR00956 544 LAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRR-----FE 618 (1394)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCc-----cc
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999999873 56
Q ss_pred cCC--C----------CCCccccCccc---------cccc-ccCC--CCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 627 CFD--R----------HGSSRDASCKF---------VEED-IVGQ--ISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 627 C~~--~----------~~~~c~~~~~~---------~~~~-~~~~--~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
|+. | .+..|...+.. ..+. .+++ ++.|+|+++|++++++|++++++++++++
T Consensus 619 C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 619 CSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred ccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 641 1 24457532211 1122 3343 57999999999999999999999999876
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-97 Score=908.67 Aligned_cols=612 Identities=22% Similarity=0.356 Sum_probs=490.3
Q ss_pred CCCCCeEEEEEeEEEEEEeccCCCCCccch----hhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCC
Q 005754 39 SSCYPITLKFIDVCYRIKIENKSKEGSSFR----RIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSG 114 (679)
Q Consensus 39 ~~~~~~~l~~~~l~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnG 114 (679)
.....++++|+||++...+.........+. .....-. . ....+.+++ .+++||+|||+.++|||+++|+||||
T Consensus 125 ~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~-~-~~~~~~~k~-~~~~IL~~vs~~i~~Ge~~~llGpnG 201 (1470)
T PLN03140 125 IKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESAL-G-MLGINLAKK-TKLTILKDASGIIKPSRMTLLLGPPS 201 (1470)
T ss_pred CCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHH-H-HhccccCCC-ccceeccCCeEEEeCCeEEEEEcCCC
Confidence 345667899999999887533221111111 1000000 0 000112233 35789999999999999999999999
Q ss_pred CcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC-------CCCH
Q 005754 115 SGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPR-------TLST 186 (679)
Q Consensus 115 sGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~ 186 (679)
||||||||+|+|+++++...+|+|.+||.+..+ ..++.++||+|+|.+++.+||+|||.|++.++.+. ..++
T Consensus 202 SGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~ 281 (1470)
T PLN03140 202 SGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELAR 281 (1470)
T ss_pred CCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCH
Confidence 999999999999988754579999999987643 23678999999999999999999999988765321 1111
Q ss_pred HHH------------------------HHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 187 KEK------------------------TSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 187 ~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+++ ...++++++.+||++++||.+|++.+++|||||||||+||++|+.+|+++|||
T Consensus 282 ~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllD 361 (1470)
T PLN03140 282 REKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMD 361 (1470)
T ss_pred HHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEe
Confidence 111 12357899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCC
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMN 321 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~n 321 (679)
|||+|||+.++.++++.|+++++ .|+|||+++|||.++++++||+|++|++|+++|+|+++++.+||+++|++||+++|
T Consensus 362 EPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n 441 (1470)
T PLN03140 362 EISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKG 441 (1470)
T ss_pred CCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999999999987 58999999999988899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCcccCCCcccccc---chHHHHHHHHhhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccC
Q 005754 322 PADFLLDLANGVYHLDGVSEREKP---NVKSSIVASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSH 397 (679)
Q Consensus 322 ~ad~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (679)
||||++|+++.............+ ...++++++|+++. ..+..+++....+ . ...+.. . .
T Consensus 442 ~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---~--------~~~~~~--~-~-- 505 (1470)
T PLN03140 442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFD---K--------SQSHKA--A-L-- 505 (1470)
T ss_pred hHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhh---h--------hhcccc--c-c--
Confidence 999999998742110000000111 34567888887653 2223222221000 0 000000 0 0
Q ss_pred CCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHHHHH
Q 005754 398 NNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSDF-----REVQDRLGLFFFISVFWGVL 471 (679)
Q Consensus 398 ~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~-----~~~~~r~g~lf~~~~~~~~~ 471 (679)
....+..+++.|++.|++|+++. +||+..+..|+++.+++|+++|++||+++. .+.+.+.|++||.++++++.
T Consensus 506 -~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~ 584 (1470)
T PLN03140 506 -VFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFN 584 (1470)
T ss_pred -cCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 12247789999999999999986 677778899999999999999999999853 34677889999988887655
Q ss_pred HHHHHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHH
Q 005754 472 PSVNAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVS 551 (679)
Q Consensus 472 ~~~~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~ 551 (679)
+ +..++.++.||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..+++
T Consensus 585 ~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~ 663 (1470)
T PLN03140 585 G-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMA 663 (1470)
T ss_pred H-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 4 577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC
Q 005754 552 QGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD 629 (679)
Q Consensus 552 ~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~ 629 (679)
++++++++++++++.+|+.+++++++++++|+||+++ +||+||+|++|+||++|||+|++.|||.+.+ |.. ..|.+
T Consensus 664 ~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~-~~~-~~~~~ 741 (1470)
T PLN03140 664 AGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPR-WMN-KMASD 741 (1470)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCcc-ccC-cccCC
Confidence 9999999999999999999999999999999999998 9999999999999999999999999998753 322 11221
Q ss_pred CCCCccccCcccccccccCCC----CchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 630 RHGSSRDASCKFVEEDIVGQI----SPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 630 ~~~~~c~~~~~~~~~~~~~~~----~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
. +...| ...++.+|+. .+|+++++|++++++|+++++++|++++
T Consensus 742 ---~-~~~~G-~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 742 ---N-STRLG-TAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ---C-CcccH-HHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 12122 2345666653 3589999999999999999999999876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-94 Score=889.92 Aligned_cols=575 Identities=25% Similarity=0.411 Sum_probs=477.8
Q ss_pred CeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 005754 43 PITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLN 122 (679)
Q Consensus 43 ~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~ 122 (679)
...++|+||+|+++.+. +++.+|+|||+++++||++||+||||||||||||
T Consensus 757 ~~~l~~~nl~~~~~~~~-----------------------------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~ 807 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKK-----------------------------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLN 807 (1394)
T ss_pred CceEEEEeeEEEecCCC-----------------------------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 34688999998874211 2367999999999999999999999999999999
Q ss_pred HHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005754 123 VLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202 (679)
Q Consensus 123 ~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 202 (679)
+|+|+.+++...+|+|.+||++....+++.+|||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||
T Consensus 808 ~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L 887 (1394)
T TIGR00956 808 VLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM 887 (1394)
T ss_pred HHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 99999875334579999999887556778899999999999999999999999888876666677778889999999999
Q ss_pred CccccccccCccCcccCHHHHHHHHHHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHH
Q 005754 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV 281 (679)
Q Consensus 203 ~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~-lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i 281 (679)
.+++|+.+|+. ..+|||||||||+||+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+
T Consensus 888 ~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~ 966 (1394)
T TIGR00956 888 ESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAIL 966 (1394)
T ss_pred hhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHH
Confidence 99999999853 34899999999999999999997 99999999999999999999999999988999999999998777
Q ss_pred HHhCCeEEEEeCC-eEEEecCh----hhHHHHHHHcCC-CCCCCCChHHHHHHHhcCCcccCCCccccccchHHHHHHHH
Q 005754 282 YQMFDKVLVLSEG-RCLYFGKG----SEAMSYFESVGF-SPSFPMNPADFLLDLANGVYHLDGVSEREKPNVKSSIVASY 355 (679)
Q Consensus 282 ~~~~D~v~lL~~G-~iv~~G~~----~~~~~~f~~~g~-~~~~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (679)
++.||++++|++| +++|+|++ +++.+||++.|+ +||++.|||||++|+++..... ...+.+.+.|
T Consensus 967 ~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~---------~~~~~~~~~~ 1037 (1394)
T TIGR00956 967 FEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA---------HANQDYHEVW 1037 (1394)
T ss_pred HHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc---------chhccHHHHH
Confidence 8899999999997 99999997 578999999996 9999999999999998742110 0112355566
Q ss_pred hhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHH
Q 005754 356 NTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVF 433 (679)
Q Consensus 356 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~ 433 (679)
+.+. .++..+++....... ..... .... .....+.++||+|+++|++|++++ +|++.+...|++
T Consensus 1038 ~~s~~~~~~~~~~~~~~~~~---------~~~~~-~~~~----~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~ 1103 (1394)
T TIGR00956 1038 RNSSEYQAVKNELDRLEAEL---------SKAED-DNDP----DALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFF 1103 (1394)
T ss_pred hcCHHHHHHHHHHHHhhccc---------ccCcc-cccc----ccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5432 222222222111100 00000 0000 011246789999999999999986 788889999999
Q ss_pred HHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhcCCCCChHHHHHHHHHHHH
Q 005754 434 QVIAASLLSGIMWWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIF-MKERASGMYTLSSYFMSRIIGDL 510 (679)
Q Consensus 434 ~~i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er~v~-~rE~~~g~Y~~~ay~la~~l~~l 510 (679)
+++++|+++|++||+++. .++++|+|++|+.+++..+. +.+.++.|+.||.+| +||+.+|+|++++|++|++++|+
T Consensus 1104 ~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~el 1182 (1394)
T TIGR00956 1104 LTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEI 1182 (1394)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999876 68999999999988876544 456778898988886 99999999999999999999999
Q ss_pred HHHHHHHHhhhhchhccccccchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 005754 511 PVELILPTVFLIIIYWMTGFKPEFIA-------FVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTG 583 (679)
Q Consensus 511 p~~~~~~~if~~i~Y~~~gl~~~~~~-------f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~ 583 (679)
|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++++|+.++|+.+++++++++++|+
T Consensus 1183 P~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~ 1262 (1394)
T TIGR00956 1183 PYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFC 1262 (1394)
T ss_pred HHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988765 99999999999999999999999999999999999999999999999
Q ss_pred hcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC--------CCCCccc-----------------
Q 005754 584 GYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD--------RHGSSRD----------------- 636 (679)
Q Consensus 584 Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~--------~~~~~c~----------------- 636 (679)
||+++ +||.||+|++|+||++|+++|++.|||.+.+ +.|.+ |.++.|.
T Consensus 1263 G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~-----~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~ 1337 (1394)
T TIGR00956 1263 GVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVP-----VTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNP 1337 (1394)
T ss_pred cccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCe-----eecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCC
Confidence 99998 9999999999999999999999999999873 45543 3445553
Q ss_pred ----------cCcccccccccC--CCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005754 637 ----------ASCKFVEEDIVG--QISPLVSIGAFLSMFVGYRLLAYLALRRL 677 (679)
Q Consensus 637 ----------~~~~~~~~~~~~--~~~~~~~~~iL~~~~~~f~~l~~~~L~~i 677 (679)
...+...+..++ .++.|+|+++++++++++ ++++++|++.
T Consensus 1338 ~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1338 NATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred CCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 111111233333 467999999999999988 7778888664
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-93 Score=828.79 Aligned_cols=596 Identities=28% Similarity=0.465 Sum_probs=490.7
Q ss_pred CCCCCcccccccCccc-cCC----CCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeec
Q 005754 22 NDCSPARDLLHQLPSL-MSS----CYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNG 96 (679)
Q Consensus 22 ~~~~~~~~~~~~~~~~-~~~----~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 96 (679)
++-++-.+.+..++.. .+. ..|..++++||.|-++....-+ .+.+++++|+|
T Consensus 753 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~-----------------------~qG~~~qLL~~ 809 (1391)
T KOG0065|consen 753 AGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMP-----------------------IQGGTRQLLNN 809 (1391)
T ss_pred ccccccccccccccccccccccCCCccccccccceEEEEeCCcccc-----------------------ccccceEhhhc
Confidence 3444455666555552 221 2255667777766665432211 11256889999
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCCCCCCCCCHHHHHHHH
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDDILYPHLTVRETLVFC 175 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 175 (679)
||+.++||.++||||+||||||||||+||||... +.++|+|.+||.+.. +.++|.+|||.|+|.|.+.+||+|.|.|+
T Consensus 810 V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fS 888 (1391)
T KOG0065|consen 810 VSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFS 888 (1391)
T ss_pred CceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHH
Confidence 9999999999999999999999999999999864 348999999999987 67899999999999999999999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHH
Q 005754 176 SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP-SLLILDEPTSGLDSTAAY 254 (679)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P-~lllLDEPtsgLD~~~~~ 254 (679)
|.+|+|...+.+++.+.||++++.++|++++|..||... +|||.+||||++||.+|+.+| .||+|||||||||+.++.
T Consensus 889 A~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~ 967 (1391)
T KOG0065|consen 889 AALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAA 967 (1391)
T ss_pred HHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHH
Confidence 999999999999999999999999999999999999877 999999999999999999999 899999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-CeEEEecChh----hHHHHHHHcC-CCCCCCCChHHHHHH
Q 005754 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCLYFGKGS----EAMSYFESVG-FSPSFPMNPADFLLD 328 (679)
Q Consensus 255 ~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-G~iv~~G~~~----~~~~~f~~~g-~~~~~~~n~ad~~~~ 328 (679)
.|++.+|++++.|+||+||+|||+.++++.||++++|++ |++||+|+.. .+++||+++| ..||...|||||++|
T Consensus 968 ~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLe 1047 (1391)
T KOG0065|consen 968 IVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLE 1047 (1391)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHh
Confidence 999999999999999999999999999999999999986 9999999874 4677999987 789998999999999
Q ss_pred HhcCCcccCCCccccccchHHHHHHHHhhh-hhHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCCCCcccCCCH
Q 005754 329 LANGVYHLDGVSEREKPNVKSSIVASYNTL-LAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIGFATW 407 (679)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (679)
++...... ....++++.|+++ .+++.++++......+ +...+ +. .....+.+|+
T Consensus 1048 vi~~~~~~---------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~-----------~~~~~-~~----~~~~~fa~s~ 1102 (1391)
T KOG0065|consen 1048 VIGAGAEA---------SLSVDFAEIWKNSEEYKRNKELVKELSQPP-----------PGFST-DL----EFKTRFAQSL 1102 (1391)
T ss_pred hccccccc---------ccCccHHHHHhccHHHHHHHHHHHHHhcCC-----------ccCCc-cc----ccccccchhH
Confidence 98742111 1223567778764 3444444444332211 00000 00 1123578999
Q ss_pred HHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005754 408 LNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSDF--REVQDRLGLFFFISVFWGVLPSVNAVFAFPQER 484 (679)
Q Consensus 408 ~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~~--~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er 484 (679)
|.|++.+++|++.. ||+|.++.+|++.+++.|+++|+.||+.+. .++||.+|++|+.+++.+......+.+.+..||
T Consensus 1103 ~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~ 1182 (1391)
T KOG0065|consen 1103 WYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATER 1182 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhh
Confidence 99999999999875 899999999999999999999999999886 799999999999888764332222345667899
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005754 485 AIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMD 564 (679)
Q Consensus 485 ~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~ 564 (679)
.+++||+++|+|++.+|.+|++++|+|+.++++++|.+++|+++|+..++.+|++|++.+++..++.+.+|+++.+++||
T Consensus 1183 ~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn 1262 (1391)
T KOG0065|consen 1183 LYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPN 1262 (1391)
T ss_pred hheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC--------CCCCc
Q 005754 565 AKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD--------RHGSS 634 (679)
Q Consensus 565 ~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~--------~~~~~ 634 (679)
.+.|+.+.++++.++.+|+|+++| .||.||+||+|+||+.|..++++..++++.+ ..|.. |.+..
T Consensus 1263 ~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~-----v~c~~~e~~~~~pp~g~t 1337 (1391)
T KOG0065|consen 1263 LQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVE-----VTCEDSEMNYFDPPSGQT 1337 (1391)
T ss_pred hhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCc-----eeeecCCccccCCCCCcC
Confidence 999999999999999999999998 9999999999999999999999999999874 56753 23445
Q ss_pred cccCcccccccccC----C--CCchHHHHHHHHHHHHHHHHHHHHHhh
Q 005754 635 RDASCKFVEEDIVG----Q--ISPLVSIGAFLSMFVGYRLLAYLALRR 676 (679)
Q Consensus 635 c~~~~~~~~~~~~~----~--~~~~~~~~iL~~~~~~f~~l~~~~L~~ 676 (679)
|.. .....+| + +......++.+.+.+++.+++.+..|+
T Consensus 1338 cge----~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y 1381 (1391)
T KOG0065|consen 1338 CGE----FMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKY 1381 (1391)
T ss_pred HHH----HHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHH
Confidence 531 1122222 2 122223334555666777777666665
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-87 Score=775.64 Aligned_cols=566 Identities=27% Similarity=0.441 Sum_probs=480.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccc-cCcEEEEecCCCCCCCCCH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI-SKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~-~~~i~yv~Q~~~l~~~lTV 168 (679)
..+||+|+|+.++|||++.++||+||||||||++|+|..+......|+|.+||.+..+.. ++.++|++|+|.++|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 357999999999999999999999999999999999987654445679999998875533 5789999999999999999
Q ss_pred HHHHHHHhhhcCCCC----CCHHHHH-HHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 169 RETLVFCSLLRLPRT----LSTKEKT-SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+|+|.|+++++.+.. .++.++. +..+.+++.+||++|+||++||...||+||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987732 2333332 26789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCCCCCCh
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNP 322 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~n~ 322 (679)
+|+|||+.++.++++.|+++++. +.|.+++.|||+++++++||+|++|++|+++|+||.+++++||+++|+.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccCCCccc---cccchHHHHHHHHhhhh-hHHHHHHHHhhccchhhhhhhcCCCCCCCCcccccccCC
Q 005754 323 ADFLLDLANGVYHLDGVSER---EKPNVKSSIVASYNTLL-APKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHN 398 (679)
Q Consensus 323 ad~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (679)
|||+.++++.........+. .......++.+.|.+.. +.+...++....+. ...+ ....
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~-----------~k~~------~~al 429 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDK-----------SKKH------KAAL 429 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhh-----------hhcc------chhh
Confidence 99999999832110001111 11223367777777643 33333333211110 0000 0011
Q ss_pred CCcccCCCHHHHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCCC-c--hhHHHHHHHHHHHHHHHHHHHHH
Q 005754 399 NNVIGFATWLNQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHSD-F--REVQDRLGLFFFISVFWGVLPSV 474 (679)
Q Consensus 399 ~~~~~~~~~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~~-~--~~~~~r~g~lf~~~~~~~~~~~~ 474 (679)
....+..+.|.|++.|+.|.+.. .||..++..++++.+++|+++|++|++.+ . .+.+.|.|++||.+++.++.+ +
T Consensus 430 ~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~-l 508 (1391)
T KOG0065|consen 430 VSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG-L 508 (1391)
T ss_pred cCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-H
Confidence 23467899999999999999876 56666778899999999999999999987 3 578999999999999987666 4
Q ss_pred HHHHHHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 005754 475 NAVFAFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGL 554 (679)
Q Consensus 475 ~~i~~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~ 554 (679)
..++...+.||||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||++++.+||.+++++++.++++.++
T Consensus 509 aEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~l 588 (1391)
T KOG0065|consen 509 AEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGL 588 (1391)
T ss_pred HHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 66777779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCC--
Q 005754 555 GLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDR-- 630 (679)
Q Consensus 555 g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~-- 630 (679)
++++++++++...|++++++.++...+++||+|| +||+||+|++|+||+.||+|+++.|||.+.+ ..|.+.
T Consensus 589 Fr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~-----~~c~p~gp 663 (1391)
T KOG0065|consen 589 FRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRR-----WPCSPSGP 663 (1391)
T ss_pred HHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhccc-----CCCCCCCC
Confidence 9999999999999999999999999999999998 9999999999999999999999999999974 566621
Q ss_pred -------CCCccccCccccccccc------------CCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 631 -------HGSSRDASCKFVEEDIV------------GQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 631 -------~~~~c~~~~~~~~~~~~------------~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
....|...+..++.+.+ ...++|+++++++|+.++|.++..+++.++|
T Consensus 664 ~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 664 AYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 24567554444433221 1346899999999999999999999998876
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-53 Score=410.85 Aligned_cols=215 Identities=28% Similarity=0.515 Sum_probs=194.5
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEE
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTG 154 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~ 154 (679)
..+++.|.|++..+|+|||++|++||+++|+||||||||||||||.|+.+++ +|+|.++|.... ..+|+++|
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcC
Confidence 3456678889999999999999999999999999999999999999999864 799999996542 24688999
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+|||+..|||++||.||+..+... -...++++.++++.++|+++||.+.+| .+|.+|||||||||+|||||+.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~-----~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKAD-----AYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred eecccccccccchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhh-----hCccccCcHHHHHHHHHHHHcC
Confidence 999999999999999999986432 234678899999999999999998766 4677899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+++|+|||||+|||+...++++.+++|+++|.|.|++||+.. .+.+.+|||++|++|+++..|+|++.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999965 58899999999999999999998875
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=394.58 Aligned_cols=218 Identities=25% Similarity=0.482 Sum_probs=198.0
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEE
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGF 155 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~y 155 (679)
..++++|+|+++.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||++... ++|++|||
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhh
Confidence 3456778888999999999999999999999999999999999999999874 8999999988643 67999999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
|-|.-.|||++||.||+.+.-.+. ..++++.+++++++|+.+||+.. ...++++++|||||+|||.+||||+.+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 999999999999999999865543 45788899999999999999852 245688999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|++||||||+++|||.++.++.+.++++.++ |+|||++|||. +|.++++|||.+|++|+++..++|++++.
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999875 99999999995 56899999999999999999999998754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=411.42 Aligned_cols=220 Identities=37% Similarity=0.590 Sum_probs=197.6
Q ss_pred CCCCcccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEE
Q 005754 80 DDQGSTAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGF 155 (679)
Q Consensus 80 ~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~y 155 (679)
..++++|+|+ ++.+|+||||++++||++||+||||||||||||+|+|+++| .+|+|.++|.+... ..++++||
T Consensus 6 ~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 6 EVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEEcCEeCccCHHHHHhheEE
Confidence 4567888999 69999999999999999999999999999999999999987 48999999987643 56788999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.+++.+||+|||.|.+.++.+. ....+++++++++.+||.+.+++ .+++||+|||||++||+||+.+
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998887543 24566789999999999985444 4557999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
|+++||||||+||||.++.++.+.|++++++| +||++|||++. ++..+||+|++|++|++++.|+++++...+..
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 99999999999999999999999999999987 89999999975 58899999999999999999999997776644
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-49 Score=386.84 Aligned_cols=220 Identities=34% Similarity=0.503 Sum_probs=197.9
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------ccc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HIS 150 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~ 150 (679)
.+..++++++++++.|++|||++|++||+++|+||||+|||||||+|.|+++|+ +|+|.++|.+..+ .++
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHH
Confidence 445667777888999999999999999999999999999999999999999974 7999999987532 467
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
+++|++||+..||..|||.||+.|..+- ....+++..++.+..-|+.+||... +.+.++.+||||||||++|||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchHHHHHHHHH
Confidence 8899999999999999999999996543 3356788888999999999999864 345788999999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|++.+|+++++||||+||||.++..+.+++++|.+. |.|++++|||.. +++.+|||+++|.+|+++..|+++++.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999876 999999999965 5999999999999999999999998754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=398.85 Aligned_cols=203 Identities=29% Similarity=0.437 Sum_probs=186.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-------ccccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-------KHISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-------~~~~~~i~yv~Q~~~l~ 163 (679)
..+|+|||++|++||+++|+|.||||||||+|+|.++.+|+ +|+|.++|.+.. +..|++||++||++.|+
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 56999999999999999999999999999999999999874 899999996643 24678999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
...||.||++|...+. ..+++++++++.++|+.+||++.++ +++.+|||||||||+|||||+.+|+|||+||
T Consensus 96 ssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~-----~yP~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKAD-----RYPAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhc-----cCchhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 9999999999987764 3678999999999999999998665 5677899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||.+.+.|+++|+++.++ |.||+++||++ +-+.++||||.+|++|++++.|+..++
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999765 99999999996 468999999999999999999998876
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=393.64 Aligned_cols=215 Identities=31% Similarity=0.466 Sum_probs=187.5
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEec
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQ 158 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q 158 (679)
+++..|+++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|++.. +++.|.++||||
T Consensus 7 ~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g~~i~~~~~kelAk~ia~vpQ 83 (258)
T COG1120 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIASLSPKELAKKLAYVPQ 83 (258)
T ss_pred EEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCCchhhcCHHHHhhhEEEecc
Confidence 344456678999999999999999999999999999999999999986 4799999998764 357789999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRT-LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
.....+.+||+|.+.++..-..... ...++.++.+++.|+.+|+.+.+++.+. +|||||||||.|||||+++|+
T Consensus 84 ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETP 158 (258)
T ss_pred CCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCC
Confidence 9988889999999988754322111 1234455679999999999998876654 699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|+||||||.||...+.+++++++++++ +|+|||+++||++. ..++||++++|++|++++.|+|++++
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999985 59999999999874 78999999999999999999998874
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=409.95 Aligned_cols=230 Identities=29% Similarity=0.468 Sum_probs=202.1
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEe
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVT 157 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~ 157 (679)
..++++|.|++..+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|++... -.+|.+|+||
T Consensus 7 ~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 7 EIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred EEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceee
Confidence 3456677888899999999999999999999999999999999999999874 7999999988754 4578999999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|+..|||+|||+||+.|+...+ ...++++.++++++.|+.++|++.++ +++.+|||||||||+|||||+.+|+
T Consensus 84 Q~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~-----R~p~qLSGGQqQRVALARAL~~~P~ 156 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFAD-----RKPHQLSGGQQQRVALARALVPEPK 156 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhh-----hChhhhChHHHHHHHHHHHhhcCcc
Confidence 9999999999999999998733 33456778899999999999998554 5677899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCC
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSP 316 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~ 316 (679)
+||||||.|+||..-+.++...|+++.++ |.|.|++|||. ++.+.++|||.+|++|++...|+|+++ |..
T Consensus 157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~ei--------Y~~ 227 (352)
T COG3842 157 VLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEI--------YER 227 (352)
T ss_pred hhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHH--------hhC
Confidence 99999999999999999999999999864 99999999995 568999999999999999999999997 334
Q ss_pred CCCCChHHHHHH
Q 005754 317 SFPMNPADFLLD 328 (679)
Q Consensus 317 ~~~~n~ad~~~~ 328 (679)
|...=.|||+-+
T Consensus 228 P~~~fVA~FiG~ 239 (352)
T COG3842 228 PATRFVADFIGE 239 (352)
T ss_pred cchHHHHHHhCc
Confidence 444445666543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=383.26 Aligned_cols=200 Identities=34% Similarity=0.487 Sum_probs=179.3
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~ 161 (679)
+++++.|+...+|+|+|++|++||+++|+||||||||||||+|+|+.+| .+|+|.++|.+. ......++||||++.
T Consensus 7 ~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p---~~G~V~~~g~~v-~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 7 EGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP---TSGEVLLDGRPV-TGPGPDIGYVFQEDA 82 (248)
T ss_pred EeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCccc-CCCCCCEEEEeccCc
Confidence 4455566778899999999999999999999999999999999999987 479999999887 556778999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++|.+||.||+.++...+. .++++.++++++.|+.+||.+.. ++++++|||||||||+|||||+.+|+||+|
T Consensus 83 LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~-----~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 83 LLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFE-----DKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred ccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchh-----hcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999876542 45677778999999999999855 467889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
|||+++||+.++..+.+.|.++.+ .++||+++|||.. |...++|||++|+++
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999865 5899999999975 577899999999984
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=403.06 Aligned_cols=215 Identities=30% Similarity=0.459 Sum_probs=194.4
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEec
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQ 158 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q 158 (679)
.++++|.|++..+|+|+|++|++||+++|+||||||||||||+|||+.+| .+|+|.++|.+.+. -.+|.+++|||
T Consensus 6 l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 6 LKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCChhHCCEEEEeC
Confidence 34556677766699999999999999999999999999999999999987 48999999987654 24688999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+..|||+|||+||+.|+.+.+ ..++++.+++++++.+.|+|++..| +++++|||||||||+|||||+++|++
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~-----r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLN-----RKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHh-----cCcccCChhhHHHHHHHHHHhcCCCE
Confidence 999999999999999998765 3568889999999999999999766 45678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||+|+||...+..+...|+++.++ |.|+|.+|||.. |+..++||+.+|++|++...|+|.++.+
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 9999999999999999999999999765 899999999964 6899999999999999999999999854
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=384.93 Aligned_cols=209 Identities=31% Similarity=0.524 Sum_probs=179.7
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc-ccCcEEEEecCC---CC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH-ISKRTGFVTQDD---IL 162 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~-~~~~i~yv~Q~~---~l 162 (679)
.|+.+++|+|||+++++|++++|+||||||||||+|+|.|+++| .+|+|.++|.+..+. -+.+||||||.. .-
T Consensus 13 ~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p---~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~ 89 (254)
T COG1121 13 SYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP---SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRS 89 (254)
T ss_pred EECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC---CcceEEEccccccccccCCeEEEcCcccccCCC
Confidence 34434699999999999999999999999999999999999986 489999999876443 246899999953 44
Q ss_pred CCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 163 YPHLTVRETLVFCSLLRLP--RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
|| +||+|.+..+...+.. ...+ ++.++.++++|+.+||.+.+|+.+| +|||||+|||.|||||+++|++|+
T Consensus 90 fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 90 FP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred CC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEE
Confidence 55 6999999886433321 1122 3447889999999999999988887 599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|+|+.++..++++|++++++|+||++++||+. .+.++||+|+.|+ +++++.|+++++.+
T Consensus 163 LDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999999999976 5899999999995 78889999988754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=378.09 Aligned_cols=194 Identities=36% Similarity=0.546 Sum_probs=169.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cc-cCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HI-SKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~-~~~i~yv~Q~~~l 162 (679)
..+|++||++|++||+++|+|||||||||||++|+|+.+| .+|.+.++|.+... .+ ++.+|||||+..|
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 5799999999999999999999999999999999999987 47899999965421 23 4579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+|++||+||+.+...+.. .+..+.+++++++++.+||.+..+ +.++.+|||||||||+|||||+.+|++||+|
T Consensus 95 l~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 95 LPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999998765542 223356778899999999986544 2456789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||.+||+.+++.|+++|++++++ |+|||++|||+ ++...|||++.|.+|++
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 999999999999999999999865 99999999996 47889999999999994
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=386.23 Aligned_cols=216 Identities=31% Similarity=0.499 Sum_probs=193.8
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC---Cccc--cccCcEEEE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN---KPTK--HISKRTGFV 156 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~---~~~~--~~~~~i~yv 156 (679)
++.++.++...+++|||++|+.||++||+|||||||||||++|||+..|+ .|.|.+||+ +..+ ...|+||||
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEE
Confidence 44556777888999999999999999999999999999999999999874 789999998 4333 235789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|+..+|++|||.||+.|+...+ ....++.+.+.+++++|+.+.|++ ++++++.+|||||||||++||||+.+|
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~-----la~ryP~QLSGGQrQRVALARALA~eP 156 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEG-----LADRYPAQLSGGQRQRVALARALAVEP 156 (345)
T ss_pred EechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccc-----hhhcCchhcChHHHHHHHHHHHhhcCC
Confidence 99999999999999999998766 233457788899999999999998 456788899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
++||||||+++||..-+.++.+.|+++.++ |.|++++|||+. +++++||||++|++|+|...|+++++.+
T Consensus 157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999876 999999999965 6999999999999999999999999843
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=375.36 Aligned_cols=219 Identities=28% Similarity=0.452 Sum_probs=188.0
Q ss_pred CCCccccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCc
Q 005754 81 DQGSTAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKR 152 (679)
Q Consensus 81 ~~~~~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~ 152 (679)
.+++++.| +++++|+|||++|++||+++|+||||||||||||+|+|+..+ .+|+|.+||.++.. .+|++
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEecccchhccchHHHHHHHHh
Confidence 34455566 678999999999999999999999999999999999998876 47899999976532 35778
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPR-----TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
+||++|++.|.+.+||.||+..+..-+.+. ....++.+..+-+.|+++|+.+.+.++.+ .|||||+|||+
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVa 157 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVA 157 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHH
Confidence 999999999999999999998765433221 12224445667788999999988776655 69999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+.+|+++|.|||+++|||.+++++|+.|+++++ +|.|||++.||.. -+.++|||++-|++|+++|+|+++++-
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999999999986 5999999999965 588999999999999999999998865
Q ss_pred HH
Q 005754 307 SY 308 (679)
Q Consensus 307 ~~ 308 (679)
+.
T Consensus 237 ~~ 238 (258)
T COG3638 237 DE 238 (258)
T ss_pred HH
Confidence 44
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=365.53 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=197.0
Q ss_pred CCCccccccccc-eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEE
Q 005754 81 DQGSTAKIQERT-ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFV 156 (679)
Q Consensus 81 ~~~~~~~~~~~~-iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv 156 (679)
..+++|+|+.++ +++||||+++.||+++|+|||||||||+|++|++++.|+ +|.|.++|.+..+ ..+++||.+
T Consensus 4 v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 4 VTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred eeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhccee
Confidence 445678888776 999999999999999999999999999999999999874 7999999977533 568899999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+.+..++..||++|||.|.+.+. .++..+.+++.+++.+.|+|.++.|+++| ++|.|+||||+|||||+++|
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCC
Confidence 98889999999999999988774 45678888999999999999999998887 59999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
++++|||||||||..+...+.+.++++..+|++||++||.. +++.++||+|++|++|++++.|++++....
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999999999999999995 579999999999999999999999876543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=361.93 Aligned_cols=231 Identities=23% Similarity=0.395 Sum_probs=196.1
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISK 151 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~ 151 (679)
..+++...|+++.+|+|||+.|++++++|+|||||||||||||++....... ...+|+|.++|+++.. ++|+
T Consensus 9 ~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr 88 (253)
T COG1117 9 EVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRR 88 (253)
T ss_pred EecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHH
Confidence 4455666788899999999999999999999999999999999999875432 3478999999987532 5789
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++|+|||.+..|| +|++||+.|+.++.. ..+++.+++|++.|+..+|-+ .+|. + ++...+||||||||++|||
T Consensus 89 ~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDr-L-~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 89 RVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDR-L-HKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHH-h-hCCccCCChhHHHHHHHHH
Confidence 9999999999999 899999999987643 223677888999999988854 3443 2 2456789999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
||+.+|+|||||||||+|||.+...|-+++.+|++ .-|||++||.+. ...+..|+..++..|+++++|+.+++
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~i----- 235 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKI----- 235 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhh-----
Confidence 99999999999999999999999999999999984 689999999965 68899999999999999999999886
Q ss_pred HcCCCCCCCCChHHHH
Q 005754 311 SVGFSPSFPMNPADFL 326 (679)
Q Consensus 311 ~~g~~~~~~~n~ad~~ 326 (679)
|..|.+.-..||+
T Consensus 236 ---F~~P~~~~TedYi 248 (253)
T COG1117 236 ---FTNPKHKRTEDYI 248 (253)
T ss_pred ---hcCccHHHHHHHh
Confidence 3456656666664
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-46 Score=352.28 Aligned_cols=210 Identities=27% Similarity=0.430 Sum_probs=186.6
Q ss_pred CCCCccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccC
Q 005754 80 DDQGSTAKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISK 151 (679)
Q Consensus 80 ~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~ 151 (679)
.+++++|+|+. +++|+||||+|++||++-|+||||||||||||+|.+..+| ..|+|.++|.+... .+||
T Consensus 3 ~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 3 RFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhh
Confidence 34566677754 5599999999999999999999999999999999999887 47999999987532 4688
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
+||.||||..|++++||.||++|+.... ..+.++.++++.++|+.+||.+.++. .+.+|||||||||+||||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHH
Confidence 9999999999999999999999987653 35678889999999999999987653 567899999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
++.+|++||.||||.+|||..+.+|++++.++.+.|+||+++|||. .-+..+-.|++.|++|+++....
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999999995 45777888999999999987653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=389.62 Aligned_cols=216 Identities=30% Similarity=0.489 Sum_probs=188.6
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEe
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVT 157 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~ 157 (679)
.++++++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..++++||++
T Consensus 10 i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 10 FRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEe
Confidence 344455566678999999999999999999999999999999999999864 7999999987532 3567899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..+++++ +||||||||++||+||+.+|+
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999866543 23345556678899999999887776654 699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
+|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+-
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999888999999999965 68899999999999999999999887543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=356.52 Aligned_cols=219 Identities=26% Similarity=0.498 Sum_probs=195.7
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i 153 (679)
...+++.|+|++++++++||+++++||+++|+|||||||||.+.++.|+.+|+ +|.|.+|+.+.+. ..|..+
T Consensus 5 L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCc
Confidence 34567889999999999999999999999999999999999999999999875 7999999988653 345689
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 154 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
||+||++..|..|||+||+......+.. ...+.+.+.+++++|+.+++.|.++++- ..||||||||+.|||||+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa 155 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALA 155 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHh
Confidence 9999999999999999999877665531 2233466667899999999999887654 369999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
.+|+.++||||++|.||-+..+|.++++.|+++|..|++|.|+.. +...+|||.+++++|+++++|+|+++.+
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999999999999999976 5889999999999999999999998753
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=392.19 Aligned_cols=210 Identities=26% Similarity=0.433 Sum_probs=184.8
Q ss_pred cccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 85 TAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 85 ~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.+|||+|++.
T Consensus 10 ~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~ 86 (356)
T PRK11650 10 RKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEPADRDIAMVFQNYA 86 (356)
T ss_pred EEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 3344 456799999999999999999999999999999999999886 47999999986532 23578999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+||++||+||+.|+...+ ..++.+..++++++++.+||.+..++ .+++|||||||||+|||||+.+|++|||
T Consensus 87 lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvalARAL~~~P~llLL 158 (356)
T PRK11650 87 LYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAMGRAIVREPAVFLF 158 (356)
T ss_pred ccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999976432 23556667789999999999876654 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999875 999999999965 689999999999999999999998874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=390.20 Aligned_cols=212 Identities=30% Similarity=0.480 Sum_probs=186.6
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|++... ..+|.+|||+|+..
T Consensus 10 l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p---~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~ 86 (353)
T TIGR03265 10 IRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ---TAGTIYQGGRDITRLPPQKRDYGIVFQSYA 86 (353)
T ss_pred EEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 33445556799999999999999999999999999999999999886 47999999976532 23678999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+||++||+||+.|+...+ ..++.+.+++++++++.+||++..++ .+++|||||||||+|||||+.+|+++||
T Consensus 87 lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 87 LFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999976532 23566677889999999999886654 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++|++++.|+++++.+
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999775 999999999965 6899999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=369.91 Aligned_cols=211 Identities=34% Similarity=0.515 Sum_probs=180.4
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFV 156 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv 156 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.++|+
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v 82 (235)
T cd03261 6 LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVLIDGEDISGLSEAELYRLRRRMGML 82 (235)
T ss_pred EEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccChhhHHHHhcceEEE
Confidence 33445556799999999999999999999999999999999999886 47999999976421 245679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|++.+++.+||+||+.+...... ..+.++..++++++++.+||.+..++. ++.|||||||||+||+||+.+|
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 83 FQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKKRVALARALALDP 155 (235)
T ss_pred ccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999988643211 123455567788999999998765544 4579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999874 899999999975 57889999999999999999988764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=386.76 Aligned_cols=204 Identities=27% Similarity=0.402 Sum_probs=181.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+||||+|++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|.+... ..++++||+||+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999864 7999999986532 2367899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+..... ..++++.++++.++++.+||.+..|. ++++|||||||||+|||||+++|++|||||
T Consensus 95 ~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQRV~IARAL~~~P~iLLlDE 166 (343)
T TIGR02314 95 SSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred ccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999999875432 23456677789999999999886654 456899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+||+.++..+++.|++++++ |.|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 167 Pts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 167 ATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999875 999999999964 588999999999999999999988763
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=388.26 Aligned_cols=211 Identities=25% Similarity=0.477 Sum_probs=185.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.+|||+|+..
T Consensus 12 l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~ 88 (351)
T PRK11432 12 ITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP---TEGQIFIDGEDVTHRSIQQRDICMVFQSYA 88 (351)
T ss_pred EEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEeCCcc
Confidence 33445556799999999999999999999999999999999999986 47999999976532 23578999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+||++||+||+.|+...+ ..++.+.+++++++++.+||.+..+ +.++.|||||||||+|||||+.+|++|||
T Consensus 89 lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~-----r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 89 LFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFED-----RYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred cCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999986543 2355667788999999999987655 45668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999765 899999999965 688999999999999999999998864
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=389.55 Aligned_cols=214 Identities=25% Similarity=0.431 Sum_probs=186.4
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+. ..|+|.++|++... ..++.+|||+|+.
T Consensus 10 ~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~ 88 (362)
T TIGR03258 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHKRGLALLFQNY 88 (362)
T ss_pred EEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHHCCEEEEECCc
Confidence 34445555679999999999999999999999999999999999998742 12999999976532 2357899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+||.+||+||+.|+...+ ..++.+.+++++++++.+||++..++ .+++|||||||||+|||||+.+|++||
T Consensus 89 ~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 89 ALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH-----LPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred ccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999976533 23556667789999999999886654 456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR--GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+..+.++.+.|+++.++ |.|+|++|||+. ++..++|+|++|++|+++..|+++++.
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999876 899999999965 588999999999999999999998874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=385.87 Aligned_cols=218 Identities=30% Similarity=0.462 Sum_probs=189.8
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGF 155 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~y 155 (679)
+..++++++|+++.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..++.+||
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEE
Confidence 34455566666778999999999999999999999999999999999999864 7999999986532 35678999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.+++.+||+||+.+....+ ..+..+..++++++++.++|.+..++.++ .||||||||++||+||+.+
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALIND 190 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998755443 12344455678889999999987776654 6999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.+.
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999888999999999965 68899999999999999999999987653
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=380.37 Aligned_cols=210 Identities=27% Similarity=0.422 Sum_probs=184.4
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILY 163 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~ 163 (679)
+|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... ..++.+||++|++.++
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCC
Confidence 356678999999999999999999999999999999999999864 7999999976432 3466799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+.+..+ ..+..+..++++++++.+||.+..++.+ +.|||||||||+||+||+.+|++|||||
T Consensus 79 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 79 EDLTGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999865543 2234455667899999999988766554 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+-
T Consensus 151 Pt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999999888999999999965 68899999999999999999999887553
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=357.57 Aligned_cols=203 Identities=32% Similarity=0.438 Sum_probs=178.3
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCC--CCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDD--ILYP 164 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~--~l~~ 164 (679)
.+|+|||+++++||.++|+|+||||||||.++|+|+.+| .+|+|.++|.+... ...+.+-+||||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p---~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP---SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC---CCceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 599999999999999999999999999999999999986 48999999976543 3577899999997 5889
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
..||++.|.-.... ...++.+ +++.++|+.+||.+. ..++++.+||||||||++|||||+.+|++||||||
T Consensus 98 ~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~----~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 98 RRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPS----FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred chhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHH----HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 99999998765432 2333333 348999999999863 34578889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+||+..+.+|+++|.+++++ |.|.|++|||.. .+..+|||+++|++|++++.++..++.+
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999875 899999999965 5899999999999999999999988754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=359.15 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=195.8
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i 153 (679)
...++++|++|+-.+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.. ..+..+
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccc
Confidence 45678899999999999999999999999999999999999999999999974 7999999987542 346679
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhc--------CCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHH
Q 005754 154 GFVTQDDILYPHLTVRETLVFCSLLR--------LPRT-LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 154 ~yv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 224 (679)
+--||...+|++|||.||+..++..+ .+.. ...++..+++.++|+.+||.+.+|++.+ .||+||||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhH
Confidence 99999999999999999999875532 1111 1345667889999999999999998877 49999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChh
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
|+.|||||+++|++|+||||.+||.+..+.++.+.|+++.++ |.||+++.||.. -++.+||||++|+.|++++.|+|+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHH
Confidence 999999999999999999999999999999999999999984 799999999965 699999999999999999999999
Q ss_pred hHHH
Q 005754 304 EAMS 307 (679)
Q Consensus 304 ~~~~ 307 (679)
++.+
T Consensus 236 eV~~ 239 (250)
T COG0411 236 EVRN 239 (250)
T ss_pred HHhc
Confidence 9753
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=384.85 Aligned_cols=213 Identities=27% Similarity=0.445 Sum_probs=184.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... ..++.++||+|++.+
T Consensus 9 ~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l 85 (353)
T PRK10851 9 KKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYAL 85 (353)
T ss_pred EEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCccc
Confidence 33444567999999999999999999999999999999999998864 7999999986532 235689999999999
Q ss_pred CCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+|.+||+||+.|....+.. ...++++..++++++++.++|.+..++ ++++|||||||||+|||||+.+|++|||
T Consensus 86 ~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 86 FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999987543211 123455667789999999999876554 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++|++++.|+++++.
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999876 899999999975 589999999999999999999998874
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=385.54 Aligned_cols=207 Identities=28% Similarity=0.436 Sum_probs=182.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~ 165 (679)
|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.+|||+|++.+||.
T Consensus 24 ~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ 100 (375)
T PRK09452 24 FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP---DSGRIMLDGQDITHVPAENRHVNTVFQSYALFPH 100 (375)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECCCCCHHHCCEEEEecCcccCCC
Confidence 3446699999999999999999999999999999999999986 47999999986532 235789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+||.||+.|+...+ ..++.+.+++++++++.+||.+..++ .+++|||||||||+|||||+.+|++|||||||
T Consensus 101 ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 101 MTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred CCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999976432 23455666788999999999886654 45689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++|+++..|+++++.
T Consensus 173 s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 173 SALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999875 999999999965 688999999999999999999998864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=360.09 Aligned_cols=209 Identities=28% Similarity=0.448 Sum_probs=179.8
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+.. ...++.++|++|++
T Consensus 6 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (220)
T cd03265 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRATVAGHDVVREPREVRRRIGIVFQDL 82 (220)
T ss_pred EEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecCcChHHHhhcEEEecCCc
Confidence 34445556799999999999999999999999999999999999876 4799999987542 23456799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||+||+.+....+ .....+..++++++++.+||.+..++. ++.||||||||++||+||+.+|++++
T Consensus 83 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 83 SVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred cccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998865432 123444556789999999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
|||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|++++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999876 899999999965 5888999999999999999988765
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=375.87 Aligned_cols=212 Identities=30% Similarity=0.457 Sum_probs=182.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.+||++|++
T Consensus 10 l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~ 86 (303)
T TIGR01288 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP---DRGKITVLGEPVPSRARLARVAIGVVPQFD 86 (303)
T ss_pred EEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECcccHHHHhhcEEEEeccc
Confidence 34445556799999999999999999999999999999999999876 47999999976422 3467899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||+||+.+....+ ..+..+.+++++++++.++|.+..++.+ ++||||||||++||+||+.+|++||
T Consensus 87 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 87 NLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred cCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998654332 1234445567788999999988766554 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999888999999999975 5889999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=357.89 Aligned_cols=206 Identities=34% Similarity=0.524 Sum_probs=175.8
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++
T Consensus 5 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 5 GLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 344455556799999999999999999999999999999999999876 47999999976432 2356799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+|++||+.+..... .....+..++++++++.+||.+..++. +..||||||||++||++|+.+|++||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred hhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999998764322 123444556788999999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999986 4999999999965 578899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=380.64 Aligned_cols=208 Identities=27% Similarity=0.431 Sum_probs=184.3
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cc----cCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HI----SKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~----~~~i~yv~Q 158 (679)
+++++.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... .+ ++.++||+|
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 46678899999999999999999999999999999999999986 47999999976532 22 568999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.++|.+||+||+.|..... ..++++..+++.++++.+||++..++ +++.|||||||||+|||||+.+|++
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999876542 23456677889999999999876554 4567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||++||+.++..+.+.|+++.++ |+|||++||+.. ++.++||+|++|++|+++..|+++++.
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999999764 899999999965 588999999999999999999988764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=384.01 Aligned_cols=206 Identities=26% Similarity=0.440 Sum_probs=182.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~l 166 (679)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|++... ..++.+|||+|++.+||++
T Consensus 30 ~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~l 106 (377)
T PRK11607 30 DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHM 106 (377)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCC
Confidence 3456999999999999999999999999999999999999864 7999999976532 3467899999999999999
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
||.||+.|+...+ ..++.+.+++++++++.++|.+..+ +.+++|||||||||+|||||+.+|++|||||||+
T Consensus 107 tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~-----~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s 178 (377)
T PRK11607 107 TVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAK-----RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178 (377)
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999976532 2345667778999999999987554 4566899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 247 GLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||+..+..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 179 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 179 ALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999876 4999999999965 688999999999999999999998874
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=361.05 Aligned_cols=214 Identities=29% Similarity=0.477 Sum_probs=180.5
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~ 157 (679)
+++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... . .++.++|++
T Consensus 5 ~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 5 GLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP---TSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred eeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 344455556799999999999999999999999999999999999876 47999999976432 1 245699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCC-------CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRT-------LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
|++.+++.+||+||+.+......... ....+..++++++++.+||++..++. ++.|||||||||+||+
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~ 156 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIAR 156 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHH
Confidence 99999999999999988654321110 01334456788999999998765544 4579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999999999999999999878999999999975 57889999999999999999988765
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=355.32 Aligned_cols=204 Identities=31% Similarity=0.543 Sum_probs=176.5
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+.....++.++|++|++.+++
T Consensus 7 ~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~ 83 (210)
T cd03269 7 TKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKPLDIAARNRIGYLPEERGLYP 83 (210)
T ss_pred EEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCchhHHHHccEEEeccCCcCCc
Confidence 3344456799999999999999999999999999999999999876 4799999998765445678999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||+||+.+....+ ..+..+..+.++++++.+|+.+..++. ++.||||||||++||++|+.+|++++||||
T Consensus 84 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 84 KMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred CCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998865433 123344556788999999998766544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999878999999999975 577899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=383.72 Aligned_cols=208 Identities=30% Similarity=0.482 Sum_probs=182.0
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYP 164 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~ 164 (679)
+|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..++.++||+|+..+++
T Consensus 12 ~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~ 88 (369)
T PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYP 88 (369)
T ss_pred EeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCC
Confidence 344567999999999999999999999999999999999999863 7999999976532 23567999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||+||+.|....+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||||+.+|++||||||
T Consensus 89 ~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaLAraL~~~P~lLLLDEP 160 (369)
T PRK11000 89 HLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160 (369)
T ss_pred CCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999875432 224455667889999999998766544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||+.+++.+.+.|+++.++ |.|+|++||++. ++..+||++++|++|+++..|+++++.
T Consensus 161 ts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 161 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999765 899999999965 588999999999999999999998874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=360.29 Aligned_cols=206 Identities=30% Similarity=0.461 Sum_probs=182.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDD-ILYP 164 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~-~l~~ 164 (679)
+.+|+|+|+++++||.++|+||||||||||+++|+|+++|+ +|.|.++|.+.. ..+++++|||+|++ ..+-
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 47999999999999999999999999999999999999874 689999997643 35788999999997 3344
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.-||.|.++|+... ...+.++.+++++++++.+|+.+.++ +.+..|||||||||+||.+|+.+|++|+||||
T Consensus 94 ~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~-----r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEP 165 (235)
T COG1122 94 GPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLD-----RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEP 165 (235)
T ss_pred cCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhcc-----CCccccCCcceeeHHhhHHHHcCCCEEEEcCC
Confidence 56999999997653 24567788999999999999998765 45668999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
|||||+..+..+++.+++|.++ |+|||++|||.. .+..++||+++|++|+++++|++.++.+.
T Consensus 166 ta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 166 TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999887 799999999964 68999999999999999999998776543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=361.09 Aligned_cols=209 Identities=29% Similarity=0.443 Sum_probs=176.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~ 165 (679)
|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~ 88 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGEDATDVPVQERNVGFVFQHYALFRH 88 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCccccceEEEecCCcccCC
Confidence 3446799999999999999999999999999999999999876 47999999976432 224679999999999999
Q ss_pred CCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 166 LTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
+||+||+.+....+.. ......+..++++++++.+||.+..++. +..|||||||||+||+||+.+|++||||||
T Consensus 89 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 163 (239)
T cd03296 89 MTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 163 (239)
T ss_pred CCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999886432211 0012334456688899999998765544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 164 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 164 FGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999875 899999999975 57889999999999999999988765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=359.08 Aligned_cols=211 Identities=30% Similarity=0.521 Sum_probs=180.5
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~ 157 (679)
+++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... . .++.++|++
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred EEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccCCHhHHHhccEEEec
Confidence 344455566799999999999999999999999999999999999876 37899999976421 1 235799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||+||+.+....+ .....+..++++++++.+|+.+..++. ++.||||||||++||++|+.+|+
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred CCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998764322 123344556788999999998765544 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+|||||+|||+.+++.+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 99999999999999999999999999888999999999975 58899999999999999999988765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=378.12 Aligned_cols=204 Identities=27% Similarity=0.402 Sum_probs=179.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+|+||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.+|||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP---TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 5699999999999999999999999999999999999986 47999999976532 2357899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+....+ ..+..+.+++++++++.+||.+..++. ++.|||||||||+|||||+.+|++|||||
T Consensus 95 ~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 95 SSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999875432 234455567789999999998766544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 167 Pts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 167 ATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999765 899999999965 578899999999999999999987764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=356.32 Aligned_cols=194 Identities=28% Similarity=0.459 Sum_probs=168.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 4699999999999999999999999999999999999876 47999999976421 2456899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||.||+.+....+ .....+.+++++++++.+||.+..++. +..|||||||||+|||||+.+|++|||||
T Consensus 93 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDE 164 (216)
T TIGR00960 93 SDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQQRVAIARAIVHKPPLLLADE 164 (216)
T ss_pred ccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999998865432 123344556788999999998766544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 165 PTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999877999999999975 57789999999999974
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=354.64 Aligned_cols=200 Identities=34% Similarity=0.497 Sum_probs=173.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+|++|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+.. ..++.++|++|++.+++.+||+|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGEPVT-GPGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECc-cccCcEEEEecccccccCCCHHH
Confidence 5799999999999999999999999999999999999876 4799999997653 34568999999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+....+ ..+..+..++++++++.+||.+..++. ++.||||||||++||+||+.+|+++||||||+|||+
T Consensus 93 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 998865432 123344556788999999998765544 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEe--CCeEEEecChh
Q 005754 251 TAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLS--EGRCLYFGKGS 303 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 303 (679)
.++..+.+.|+++.+ .|+|||++||++. ++.++||++++|+ +|+++..++.+
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999965 5899999999975 5788999999999 79999887653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=365.70 Aligned_cols=221 Identities=29% Similarity=0.397 Sum_probs=185.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------ccccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------KHISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------~~~~~~i~yv~Q~~-- 160 (679)
+.+|+|||++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.. ...++.+|||+|++
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 95 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEECccccccccHHHHHhhEEEEecCcch
Confidence 4699999999999999999999999999999999999886 4799999997642 13467899999986
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++ .||.||+.|..... ..++.+.++++.++++.+||. +..+ +.++.||||||||++||++|+.+|++|
T Consensus 96 ~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSgGqkqrvaiA~aL~~~p~il 166 (288)
T PRK13643 96 QLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWE-----KSPFELSGGQMRRVAIAGILAMEPEVL 166 (288)
T ss_pred hccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhcc-----CCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 5565 69999999865421 234566677889999999996 3444 345689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCC
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSP 316 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~ 316 (679)
||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|++++..+ .++..|+.+
T Consensus 167 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (288)
T PRK13643 167 VLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGV 245 (288)
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCC
Confidence 999999999999999999999999878999999999975 5778999999999999999999988743 455677777
Q ss_pred CCCCChHH
Q 005754 317 SFPMNPAD 324 (679)
Q Consensus 317 ~~~~n~ad 324 (679)
|.....++
T Consensus 246 p~~~~~~~ 253 (288)
T PRK13643 246 PKATHFAD 253 (288)
T ss_pred ChHHHHHH
Confidence 65444433
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=358.17 Aligned_cols=210 Identities=25% Similarity=0.381 Sum_probs=176.6
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc-----CCCCCeeeEEEECCCCccc------cccCc
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL-----HQGHGLTGTILTNNNKPTK------HISKR 152 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~-----~~~~~~~G~i~~~g~~~~~------~~~~~ 152 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +| .+|+|.++|.+... ..++.
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (227)
T cd03260 6 LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYDLDVDVLELRRR 82 (227)
T ss_pred EEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhhcchHHHHHHhh
Confidence 344455567999999999999999999999999999999999998 54 47999999976421 24567
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++|++|++.++ .+||+||+.+....+. .....+.+++++++++.+||.+..+.... +++||||||||++||++|
T Consensus 83 i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al 156 (227)
T cd03260 83 VGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARAL 156 (227)
T ss_pred EEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHH
Confidence 99999999888 7999999988654321 11222345678899999999876554320 467999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. ++.++||++++|++|++++.|++++
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999887 99999999975 5788999999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=358.12 Aligned_cols=202 Identities=28% Similarity=0.413 Sum_probs=176.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILYP 164 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~~ 164 (679)
++|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 799999999999999999999999999999999999986 47899999976432 13567999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+|++||+.+....+ .....+..+.++++++.+||.+..++. ++.||||||||++||++|+.+|++++||||
T Consensus 96 ~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (233)
T cd03258 96 SRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQRVGIARALANNPKVLLCDEA 167 (233)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999998865432 123444556788999999998765544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 168 ~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 168 TSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999875 899999999965 57889999999999999999987765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=371.70 Aligned_cols=211 Identities=26% Similarity=0.443 Sum_probs=183.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..++.+||++|++
T Consensus 8 l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~ 84 (301)
T TIGR03522 8 LTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHN 84 (301)
T ss_pred EEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCC
Confidence 334455577999999999999999999999999999999999998864 7999999976532 3467899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++.+ +.||||||||++||+||+.+|++||
T Consensus 85 ~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 85 PLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred CCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999876543 1234455667899999999998776554 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.++|||+++|++|++++.|++++...
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999965 799999999965 5889999999999999999999998755
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=360.42 Aligned_cols=213 Identities=28% Similarity=0.474 Sum_probs=177.9
Q ss_pred ccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEE
Q 005754 84 STAKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~y 155 (679)
++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.++|
T Consensus 6 l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 82 (241)
T cd03256 6 LSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGTDINKLKGKALRQLRRQIGM 82 (241)
T ss_pred EEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEeccccCHhHHHHHHhccEE
Confidence 3444544 6799999999999999999999999999999999999876 47999999976432 23567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRL-----PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++|++.+++.+||+||+.+...... ..........++++++++.++|.+..++ .++.|||||||||+||+
T Consensus 83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLSGGQQQRVAIAR 157 (241)
T ss_pred EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCCHHHHHHHHHHH
Confidence 9999999999999999987532100 0011122345667889999999875554 34579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 999999999999999999999999999999999864 899999999975 57889999999999999999998775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=348.54 Aligned_cols=219 Identities=28% Similarity=0.509 Sum_probs=204.4
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
..++++|+++++.+++|+||++++|++++++|||||||||.+++|.|++.| .+|+|.++|.+.+...+.+|||.|.+
T Consensus 4 ~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~---~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 4 EIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP---TEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred EEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc---cCceEEEcCcchhhhhhhhcccChhh
Confidence 346788999999999999999999999999999999999999999999986 48999999999988889999999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
..|+|.+||.|.|.|.+.++ .+++++.++.++.+|+++++......+| ++||.|++|++.+..+++++|+++
T Consensus 81 RGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEE
Confidence 99999999999999998875 5788999999999999999988766554 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
+||||+|||||.+.+.+.+.+.+++++|.|||+++|.+ +.+.++||++++|++|+.|.+|+.+++..-|.
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999999999995 56999999999999999999999999987653
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=352.91 Aligned_cols=204 Identities=28% Similarity=0.481 Sum_probs=174.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
++.|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 7 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (213)
T cd03301 7 TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRDVTDLPPKDRDIAMVFQNYAL 83 (213)
T ss_pred EEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCCcccceEEEEecChhh
Confidence 3445556799999999999999999999999999999999999876 47999999976532 224579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|++||+.+....+ .....+.+++++++++.+|+.+..+.. ++.||||||||++||++|+.+|++++||
T Consensus 84 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 84 YPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred ccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998864332 123445556788999999998766554 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999874 899999999975 578899999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=334.79 Aligned_cols=200 Identities=32% Similarity=0.468 Sum_probs=176.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHH
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETL 172 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l 172 (679)
-..++.|+.||++||+||||||||||||+|+|...| .+|+|++||++... -..|-++++||+..+|..|||.+|+
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNi 92 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNI 92 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC---CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhh
Confidence 367889999999999999999999999999999987 48999999988653 3567799999999999999999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 005754 173 VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252 (679)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~ 252 (679)
.++..-. -.-.++.+++++.++.++||..+.++ .+.+|||||||||++||+|+++-+|++||||+|+|||.-
T Consensus 93 gLGl~P~---LkL~a~~r~~v~~aa~~vGl~~~~~R-----LP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~L 164 (231)
T COG3840 93 GLGLSPG---LKLNAEQREKVEAAAAQVGLAGFLKR-----LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164 (231)
T ss_pred cccCCcc---cccCHHHHHHHHHHHHHhChhhHhhh-----CccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHH
Confidence 8875422 12235667789999999999987654 456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 253 AYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 253 ~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+.+...++.++++ ++.|++++||+|+ ++.+++|+++++++|||.+.|+.++..
T Consensus 165 R~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 165 RAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999986 5899999999987 588999999999999999999987753
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=383.90 Aligned_cols=214 Identities=28% Similarity=0.467 Sum_probs=183.1
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEec
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQ 158 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q 158 (679)
+++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. +..++++|||+|
T Consensus 8 nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p---~sG~I~l~G~~i~~~~~~~~~~~ig~v~q 84 (402)
T PRK09536 8 DLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP---TAGTVLVAGDDVEALSARAASRRVASVPQ 84 (402)
T ss_pred eEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEcCcCCHHHHhcceEEEcc
Confidence 344455567899999999999999999999999999999999999986 4799999997653 245678999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+||+||+.++....... ....++.+++++++++.+|+.+..++. +++||||||||++|||||+++|+
T Consensus 85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCC
Confidence 999989999999998854321100 001234456789999999998876654 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++|||+++|++|++++.|+++++
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999878999999999975 58899999999999999999999875
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=354.33 Aligned_cols=197 Identities=36% Similarity=0.558 Sum_probs=172.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCCCCCCH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~~~lTV 168 (679)
++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 699999999999999999999999999999999999876 47999999976532 345789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
+||+.+....+ ..+..+..++++++++.+||.+..+.. ++.||||||||++|||||+.+|++|+|||||+||
T Consensus 96 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 167 (218)
T cd03266 96 RENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167 (218)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence 99998765432 123445567789999999998766554 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 168 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 168 DVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 999999999999999878999999999975 578899999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=354.04 Aligned_cols=202 Identities=31% Similarity=0.512 Sum_probs=175.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~~~lT 167 (679)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 6799999999999999999999999999999999999876 47999999976532 34567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+||+.+....+ ..+..+..++++++++.++|.+..++.+ +.||||||||++||++|+.+|++|||||||+|
T Consensus 92 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~ 163 (220)
T cd03263 92 VREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163 (220)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 999998865432 1233444567889999999987665544 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+.+++.+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 164 LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 164 LDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999976 599999999975 47789999999999999999987753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=354.41 Aligned_cols=208 Identities=28% Similarity=0.467 Sum_probs=175.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEec
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQ 158 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q 158 (679)
++++|+++++|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... . .++.++|++|
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (222)
T cd03224 6 LNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPHERARAGIGYVPE 82 (222)
T ss_pred EEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCCCCHHHHHhcCeEEecc
Confidence 34455556799999999999999999999999999999999999886 47999999976432 1 2467999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+|++||+.+...... ..+..++++++++.+ ++.+..++ .++.||||||||++|||||+.+|+
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 83 GRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQ-----LAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred ccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhC-----chhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999988653321 123345567788887 56665554 345799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999878899999999975 57899999999999999999987765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=357.23 Aligned_cols=210 Identities=29% Similarity=0.475 Sum_probs=179.2
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc------cccCcEEEEec
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+... ..++.++|++|
T Consensus 8 ~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 84 (240)
T PRK09493 8 SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQ 84 (240)
T ss_pred EEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCChhHHHHhhceEEEec
Confidence 3344456799999999999999999999999999999999999876 47999999976431 23567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++.+||+||+.+..... ......+..++++++++.+||++..+.. ++.||||||||++||++|+.+|++
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 85 QFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred ccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999998754211 1123445556788999999998765544 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999877999999999975 57789999999999999999988765
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=358.32 Aligned_cols=210 Identities=32% Similarity=0.520 Sum_probs=178.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------------ccccCc
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------------KHISKR 152 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------------~~~~~~ 152 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.. ...++.
T Consensus 10 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T PRK11264 10 VKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86 (250)
T ss_pred EEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccccccchhhHHHHhhhh
Confidence 3344456799999999999999999999999999999999999876 4799999986542 123567
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++|++|++.+++.+||.||+.+...... .....+..++++++++.+||.+..++ .++.||||||||++||++|
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 87 VGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhCChHHHHHHHHHHHH
Confidence 9999999999999999999987532111 12344455678899999999876554 4557999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999878999999999965 57889999999999999999988765
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=364.78 Aligned_cols=215 Identities=28% Similarity=0.481 Sum_probs=180.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc------cccCcEEEEecCCC-CC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK------HISKRTGFVTQDDI-LY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~~~-l~ 163 (679)
+.+|+|||++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.+|||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 4699999999999999999999999999999999999886 47999999976532 34578999999863 33
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT--KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
...||+||+.|..... ..++++..++++++++.+||. +..+ +.++.||||||||++||+||+.+|++|||
T Consensus 97 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~~LSgGq~qrv~iAraL~~~P~llll 168 (287)
T PRK13637 97 FEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKD-----KSPFELSGGQKRRVAIAGVVAMEPKILIL 168 (287)
T ss_pred ccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhcc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3579999999865422 235566667889999999996 4444 44568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|||+++|++|++++.|+++++.+ .....|+..|
T Consensus 169 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 169 DEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred ECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCCC
Confidence 9999999999999999999999875 999999999965 5778999999999999999999988753 2334565544
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=357.09 Aligned_cols=208 Identities=26% Similarity=0.517 Sum_probs=178.4
Q ss_pred ccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC
Q 005754 86 AKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD 160 (679)
Q Consensus 86 ~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~ 160 (679)
++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 8 ~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (242)
T cd03295 8 KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDIREQDPVELRRKIGYVIQQI 84 (242)
T ss_pred EEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEcCcCChHHhhcceEEEccCc
Confidence 34444 5799999999999999999999999999999999999876 37899999976432 3456799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK--CENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
.+++.+||+||+.+....+ ....++..++++++++.+||.+ ..++ .++.|||||||||+|||||+.+|++
T Consensus 85 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~l 156 (242)
T cd03295 85 GLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQRVGVARALAADPPL 156 (242)
T ss_pred cccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999998865432 1234455567889999999985 4443 4567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 157 lllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999875 899999999975 57889999999999999999987765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=361.57 Aligned_cols=214 Identities=27% Similarity=0.405 Sum_probs=184.4
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c----ccCc
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H----ISKR 152 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~----~~~~ 152 (679)
..+++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... . .++.
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p---~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP---TSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccChhhhhhhhcCc
Confidence 34677889999999999999999999999999999999999999999886 37999999976431 1 1357
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++|++|++.+++.+||+||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||++||+||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral 175 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARAL 175 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHH
Confidence 999999999999999999998865332 1233445567889999999987666544 57999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999764 899999999965 578899999999999999999887753
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=359.36 Aligned_cols=213 Identities=28% Similarity=0.426 Sum_probs=177.1
Q ss_pred cccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEE
Q 005754 84 STAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~y 155 (679)
++++|+ ++++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|
T Consensus 7 l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (243)
T TIGR02315 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGTDITKLRGKKLRKLRRRIGM 83 (243)
T ss_pred eeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence 344454 56799999999999999999999999999999999999876 47999999976431 23567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcC-----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRL-----PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++|++.+++.+||+||+.+...... .......+.+++++++++.+||.+..+. .++.|||||||||+||+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----RADQLSGGQQQRVAIAR 158 (243)
T ss_pred EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHH
Confidence 9999999999999999976432100 0001123345678889999999875554 34579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999999764 899999999975 57789999999999999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=349.97 Aligned_cols=201 Identities=31% Similarity=0.495 Sum_probs=173.0
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|+++++|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.
T Consensus 6 l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (208)
T cd03268 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGKSYQKNIEALRRIGALIEAPG 82 (208)
T ss_pred EEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCCcccchHHHHhhEEEecCCCc
Confidence 33445556799999999999999999999999999999999999876 47999999986532 34567999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||+||+.+....+. . ..++++++++.++|.+..++. ++.|||||||||+||++|+.+|+++||
T Consensus 83 ~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 83 FYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred cCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999988654221 1 134578899999998766554 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||+|||+.+++.+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.|
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999888999999999975 577899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=363.02 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=179.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------------------------
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------------------------ 146 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------------------------ 146 (679)
..+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999999864 699999875321
Q ss_pred ----ccccCcEEEEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCH
Q 005754 147 ----KHISKRTGFVTQDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISG 220 (679)
Q Consensus 147 ----~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 220 (679)
...++.+|||+|++ ..+...||+||+.|+.... ..++++..++++++++.+||. +..+ +.+..|||
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSg 168 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQ-----RSPFELSG 168 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh-----CChhhCCH
Confidence 13456899999985 2334579999999865422 235566677889999999996 4444 34567999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 221 GerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++||++. .+.++|||+++|++|++++.|
T Consensus 169 GqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999878999999999964 578999999999999999999
Q ss_pred ChhhHHH---HHHHcCCCCC
Q 005754 301 KGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 301 ~~~~~~~---~f~~~g~~~~ 317 (679)
+++++.+ .....|...|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 248 DTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred CHHHHhcCHHHHHHCCCCCC
Confidence 9988643 2344555544
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=360.79 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=177.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQD 159 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~ 159 (679)
+|+++.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|+
T Consensus 16 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~ 92 (269)
T PRK11831 16 TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQS 92 (269)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccChhhHHHHhhcEEEEecc
Confidence 34456799999999999999999999999999999999999876 47999999875431 135679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++.+||.||+.+...... ..+..+..++++++++.+||.+..++. ++.|||||||||+||++|+.+|++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~laral~~~p~ll 165 (269)
T PRK11831 93 GALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMARRAALARAIALEPDLI 165 (269)
T ss_pred cccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999987543211 123444556778899999998766554 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 166 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999765 899999999965 58889999999999999999988765
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=351.18 Aligned_cols=193 Identities=34% Similarity=0.528 Sum_probs=166.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~~l 162 (679)
+.+|+|+||++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 5799999999999999999999999999999999999876 47999999976432 124579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+ .....+..++++++++.+||.+..++. ++.||||||||++||+||+.+|++||||
T Consensus 94 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLD 165 (218)
T cd03255 94 LPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQQRVAIARALANDPKIILAD 165 (218)
T ss_pred CCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence 99999999999865432 122334456788999999998765544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++
T Consensus 166 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 166 EPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 99999999999999999999987 59999999999754 54 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=363.49 Aligned_cols=214 Identities=29% Similarity=0.441 Sum_probs=180.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------ccccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------KHISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------~~~~~~i~yv~Q~~-- 160 (679)
+++|+|||++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|++.. ...++.+|||+|++
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP---TSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 4699999999999999999999999999999999999886 3799999997652 13456799999986
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.++ ..||+||+.|..... ..+.++.+++++++++.+||. +..++ .++.|||||||||+||++|+.+|++|
T Consensus 97 ~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~lAraL~~~P~ll 167 (290)
T PRK13634 97 QLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELSGGQMRRVAIAGVLAMEPEVL 167 (290)
T ss_pred hhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 455 469999999865322 234555567789999999996 44444 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCC
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFS 315 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~ 315 (679)
||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.++|||+++|++|++++.|+++++.+ .+...++.
T Consensus 168 llDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 246 (290)
T PRK13634 168 VLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLD 246 (290)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCC
Confidence 999999999999999999999999765 999999999965 5889999999999999999999887642 34455665
Q ss_pred CC
Q 005754 316 PS 317 (679)
Q Consensus 316 ~~ 317 (679)
.|
T Consensus 247 ~~ 248 (290)
T PRK13634 247 LP 248 (290)
T ss_pred CC
Confidence 44
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=341.91 Aligned_cols=215 Identities=27% Similarity=0.448 Sum_probs=182.5
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEE
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTG 154 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~ 154 (679)
..+++...|+..++|++||+++++||+++|+||||+|||||||+|+|+.++ .+|+|.++|++.+. ..++.++
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred eEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEECCeecCCCCHHHHHhCCeE
Confidence 345666778899999999999999999999999999999999999999985 38999999988643 4577899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
||||...+||.|||+|||..++..+.. ++......+++.+.| .|.+.++++-| .|||||||.++|||||+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm 152 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALM 152 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHh
Confidence 999999999999999999987654321 112222266677766 35555555544 69999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
.+|++|+|||||.||-|.-.++|.+.|++++++ |.||+++.++.. ...+++||.++|.+|++++.|+.+++.+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999999999999999976 789999998855 5889999999999999999999988643
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=346.81 Aligned_cols=199 Identities=30% Similarity=0.444 Sum_probs=168.7
Q ss_pred Cccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCC
Q 005754 83 GSTAKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~ 160 (679)
+++++|++ +.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 4 ~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEhhhHHhhcceEEEecCh
Confidence 44556665 7899999999999999999999999999999999999876 47999999976532 3456799999997
Q ss_pred C-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 I-LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
. .+..+||+||+.+..... . ...++++++++.+||.+..++. ++.||||||||++|||||+.+|+++
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 81 DYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHHHHHHhCCCEE
Confidence 4 344679999998754321 1 1124678899999998766554 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
||||||+|||+.+++.+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999878999999999975 577899999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=359.45 Aligned_cols=215 Identities=27% Similarity=0.385 Sum_probs=179.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.+||++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP---QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 4699999999999999999999999999999999999886 47999999976532 34567999999963 4456
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||.||+.|..... ..++.+.+++++++++.+||.+..++. +..|||||||||+||+||+.+|++|||||||
T Consensus 95 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qrv~laraL~~~p~llllDEPt 166 (274)
T PRK13647 95 STVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 (274)
T ss_pred CcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 89999998864321 234445566788999999998765544 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH--HHHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM--SYFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~--~~f~~~g~~~~ 317 (679)
+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|++++.. +.+...|...|
T Consensus 167 ~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 167 AYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcCCCCC
Confidence 999999999999999999877999999999965 577899999999999999999986532 23344455433
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=354.81 Aligned_cols=212 Identities=24% Similarity=0.487 Sum_probs=180.3
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~ 157 (679)
+++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++
T Consensus 8 ~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (241)
T PRK10895 8 NLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNIIIDDEDISLLPLHARARRGIGYLP 84 (241)
T ss_pred CcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHHHHHHhCeEEec
Confidence 344455556799999999999999999999999999999999999876 47899999976432 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||.||+.+....+ .....++.+.+++++++.+|+.+..+. .++.||||||||++||++|+.+|+
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 85 QEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred cCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998754322 112334455678899999999865544 445799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999878999999999964 58899999999999999999988765
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=354.93 Aligned_cols=210 Identities=26% Similarity=0.421 Sum_probs=176.9
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCCCccc------cccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPTK------HISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~~g~~~~~------~~~~~i~yv~ 157 (679)
++|+++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|+.. .+|+|.++|.+... ..++.++|++
T Consensus 9 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 88 (247)
T TIGR00972 9 LFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVF 88 (247)
T ss_pred EEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEe
Confidence 334445699999999999999999999999999999999999875311 27999999976431 2356899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT----KCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
|++.+++ +|+.||+.+....+ ...+..+..++++++++.+||. +..+ ..++.||||||||++|||+|+
T Consensus 89 q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 89 QKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVKDRLH-----DSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred cCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCcchhhHhh-----CCcccCCHHHHHHHHHHHHHh
Confidence 9999988 99999998865432 1123445556788999999997 4333 345679999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999977 489999999975 57889999999999999999988775
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=364.03 Aligned_cols=211 Identities=29% Similarity=0.422 Sum_probs=180.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c---cc-CcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H---IS-KRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~---~~-~~i~yv~Q~~-- 160 (679)
..+|+||||+|++||+++|+|+||||||||+++|+|+++|+...+|+|.++|.+... . .+ +.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999998642348999999986532 1 22 4799999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+.|.+|+.+++........ ..+..+..+++.++++.+||.+..+. .++++++|||||||||+||+||+.+|++||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~LSgG~~QRv~IArAL~~~P~lli 184 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHEFSGGMRQRVMIAMALLCRPKLLI 184 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 68899999999976543321 23455666788999999999753322 246788999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||+|||+.++..+++.|++++++ |.|+|++|||+. .+.+++|++++|++|++++.|+++++.
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 185 ADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999875 999999999975 577899999999999999999988874
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=348.59 Aligned_cols=194 Identities=31% Similarity=0.505 Sum_probs=167.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDIL 162 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l 162 (679)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 90 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRL 90 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcccCCHHHHHHHHhheEEEecChhh
Confidence 35699999999999999999999999999999999999876 47999999976432 235679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||.||+.+....+ .......+++++++++.++|.+..++. ++.||||||||++||++|+.+|+++|||
T Consensus 91 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~lllLD 162 (214)
T TIGR02673 91 LPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQRVAIARAIVNSPPLLLAD 162 (214)
T ss_pred ccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999998865432 123344556788999999998755544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 163 EPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999878999999999975 5888999999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=355.34 Aligned_cols=214 Identities=28% Similarity=0.427 Sum_probs=180.0
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---------------
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------------- 146 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------------- 146 (679)
++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+..
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK10619 9 IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQTINLVRDKDGQLKVADKN 85 (257)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccccccccccccccch
Confidence 3444445556799999999999999999999999999999999999876 4799999986542
Q ss_pred --ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHH
Q 005754 147 --KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 147 --~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 224 (679)
...++.++|++|++.+++.+||+||+.+...... .....+.++++.++++.+|+.+.. .++.++.|||||||
T Consensus 86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~----~~~~~~~LS~G~~q 159 (257)
T PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERA----QGKYPVHLSGGQQQ 159 (257)
T ss_pred HHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhh----hhCCcccCCHHHHH
Confidence 1335689999999999999999999987432111 123445567788999999997642 12345689999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++..+|||+++|++|++++.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999878999999999975 5778999999999999999998876
Q ss_pred H
Q 005754 305 A 305 (679)
Q Consensus 305 ~ 305 (679)
.
T Consensus 239 ~ 239 (257)
T PRK10619 239 L 239 (257)
T ss_pred h
Confidence 5
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=367.77 Aligned_cols=207 Identities=28% Similarity=0.416 Sum_probs=178.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
..+|+|||++|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... ..++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 5699999999999999999999999999999999999886 37999999976532 2456899999997 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++|.+||.||+.+......+ ..++++.+++++++++.+||.+. +.++++++|||||||||+||+||+.+|++||+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~----~~~~~p~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPN----LINRYPHEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChH----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88999999999886443211 23556667788999999999531 23456778999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++.++++.|+++.++ |.|||++|||+. .+.++||++++|++|++++.|+++++.
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999875 999999999965 578899999999999999999988764
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=348.21 Aligned_cols=205 Identities=46% Similarity=0.778 Sum_probs=172.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|++++....+|+|.++|.+... ..++.++|++|++.+++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 679999999999999999999999999999999999987211258999999976532 4567899999999999999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEA-VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
||+.+......+.........+++++ .++.+++.+..++ .++.||||||||++|||+|+.+|+++||||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 99998654332221122223334555 8899998765544 45579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|+.++..+.+.|++++++|.|+|++||++..++.++||++++|++|++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998779999999999755689999999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=350.73 Aligned_cols=211 Identities=32% Similarity=0.504 Sum_probs=177.8
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 7 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~ 83 (236)
T TIGR03864 7 LSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDLRRAPRAALARLGVVFQQP 83 (236)
T ss_pred eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcccCChhhhhhEEEeCCCC
Confidence 33444556799999999999999999999999999999999999876 47999999975432 2235799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+|++||+.+....+ .....+..+.++++++.+||.+..++.+ +.||||||||++|||+|+.+|+++|
T Consensus 84 ~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 84 TLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred CCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888999999998765432 1234445567889999999987665544 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|||+.++..+.+.|+++++ +|.|||++||++.. +. .+|++++|++|++++.|++++..+
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999985 58999999999764 54 599999999999999998876643
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=361.70 Aligned_cols=214 Identities=28% Similarity=0.419 Sum_probs=179.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------------------cccc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------------------KHIS 150 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------------------~~~~ 150 (679)
+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.. ...+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 46999999999999999999999999999999999999863 789999985532 1346
Q ss_pred CcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHH
Q 005754 151 KRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 151 ~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
+.++||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+||. +..+ +.+..|||||||||+
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~~LSgGqkqRva 186 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLE-----RSPFGLSGGQKRRVA 186 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhc-----CCcccCCHHHHHHHH
Confidence 7899999986 4665 49999998864321 234555667788999999996 4443 345679999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|+++..|++++..+
T Consensus 187 iAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999999878999999999965 4778999999999999999999987642
Q ss_pred ---HHHHcCCCCC
Q 005754 308 ---YFESVGFSPS 317 (679)
Q Consensus 308 ---~f~~~g~~~~ 317 (679)
.++..|+..|
T Consensus 266 ~~~~~~~~~~~~p 278 (320)
T PRK13631 266 DQHIINSTSIQVP 278 (320)
T ss_pred CHHHHHHcCCCCC
Confidence 3455666655
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=359.45 Aligned_cols=214 Identities=27% Similarity=0.421 Sum_probs=181.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC-CCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD-ILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~-~l~~~ 165 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA---ESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 4599999999999999999999999999999999999986 37899999976532 3456899999997 46777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+||+||+.|..... ..+.++..++++++++.+||++..+.. +..||||||||++||+||+.+|++|||||||
T Consensus 97 ~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 168 (279)
T PRK13650 97 ATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168 (279)
T ss_pred ccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 89999998864321 234555667789999999998765544 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
+|||+.++..+++.|++++++ |+|||++||++. .+ ..||++++|++|+++..|++++..+ .++..|+..|
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 999999999999999999875 999999999975 45 5899999999999999999887653 2445555544
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=346.77 Aligned_cols=194 Identities=30% Similarity=0.493 Sum_probs=168.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 5799999999999999999999999999999999999876 47999999875421 2456799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|++||+.+....+ ....++..++++++++.+||++..++. +++||||||||++|||+|+.+|+++||||
T Consensus 91 ~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDE 162 (214)
T cd03292 91 PDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADE 162 (214)
T ss_pred cCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998865432 123444556788999999998765544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++
T Consensus 163 Pt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 163 PTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999877999999999975 57789999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=346.41 Aligned_cols=201 Identities=31% Similarity=0.567 Sum_probs=172.4
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDIL 162 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l 162 (679)
++|+++.+|+|+|+++++| +++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 8 ~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 8 KRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83 (211)
T ss_pred EEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCCccccchHHHHhheEEecCCCcc
Confidence 3444567999999999999 9999999999999999999999876 47999999976532 346789999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+ ..+..+..+.++++++.+||.+..++. +..||||||||++||+||+.+|+++|||
T Consensus 84 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 84 YPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred cccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998865432 123344456788999999998766554 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|++++.|
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999986 599999999975 477899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=357.98 Aligned_cols=204 Identities=27% Similarity=0.435 Sum_probs=175.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~-- 160 (679)
+.+|+|||++|++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+... ..++.+|||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 46999999999999999999999999999999999998863 7999999976421 3467899999986
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++ .||.||+.|..... ..+..+..++++++++.+||. +..++ .++.||||||||++|||+|+.+|++|
T Consensus 97 ~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGq~qrv~laraL~~~p~il 167 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMSGGQMRKIAIVSILAMNPDII 167 (286)
T ss_pred ccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 4565 59999999864321 234556667789999999996 44443 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++++.|+++++.+
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 168 VLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999976 4999999999965 5788999999999999999999887643
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=352.47 Aligned_cols=205 Identities=22% Similarity=0.397 Sum_probs=173.8
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDIL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~l 162 (679)
|+++.+|+|+|+++++||+++|+|||||||||||++|+|..+| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 91 (237)
T PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRV 91 (237)
T ss_pred eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEEECCEecCCCCHHHHHHhCEEEeccCccc
Confidence 3346799999999999999999999999999999999999876 47899999976432 235679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++.+||.||+.+..... ...+..+.++++++.+ ++.+..++ .++.||||||||++||++|+.+|++++|
T Consensus 92 ~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 92 FSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred CCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999998754211 1223344567777877 47654443 3457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999999999888999999999965 588999999999999999999988763
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=348.55 Aligned_cols=199 Identities=31% Similarity=0.465 Sum_probs=170.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cc-cCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HI-SKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~-~~~i~yv~Q~~~l 162 (679)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... .. ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 4699999999999999999999999999999999999876 48999999976432 12 2579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+ ....++.+++++++++.+||.+..++. ++.||||||||++||++|+.+|++||||
T Consensus 99 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrl~la~al~~~p~lllLD 170 (233)
T PRK11629 99 LPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGERQRVAIARALVNNPRLVLAD 170 (233)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999998865432 123344556788999999998765544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+|||+.++..+.+.|+++++ +|+|||++||++. ++.. +|++++|++|++++.|+.
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 171 EPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999976 5899999999975 3544 689999999999988764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=345.98 Aligned_cols=208 Identities=29% Similarity=0.467 Sum_probs=171.4
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~ 161 (679)
++++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ..++.++|++|++.
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~-~~~~~i~~v~q~~~ 78 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGKPLE-KERKRIGYVPQRRS 78 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCccHH-HHHhheEEeccccc
Confidence 3456667667899999999999999999999999999999999999876 3799999997653 34668999999987
Q ss_pred CC--CCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 162 LY--PHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 162 l~--~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+. ..+||+||+.+....... .....++..++++++++.+|+.+..++. +..||||||||++||+||+.+|++
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCE
Confidence 63 337999999875432110 0011233456788999999998655544 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++| +++.|
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999878999999999965 578899999999876 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=356.86 Aligned_cols=212 Identities=26% Similarity=0.448 Sum_probs=177.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---------cccCcEEEEe
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---------HISKRTGFVT 157 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---------~~~~~i~yv~ 157 (679)
+|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+.+.+|+|.++|.+... ..++.++|++
T Consensus 13 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~ 92 (262)
T PRK09984 13 TFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92 (262)
T ss_pred EeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEc
Confidence 3445679999999999999999999999999999999999998754557999999976421 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPR-----TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|++.+++.+||.||+.+......+. ....++.+++++++++.+||.+..++. ++.|||||||||+|||||
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral 167 (262)
T PRK09984 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----VSTLSGGQQQRVAIARAL 167 (262)
T ss_pred cccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----ccccCHHHHHHHHHHHHH
Confidence 9999999999999998753211000 011233456788999999998766554 457999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|++|++++.|++++
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 168 MQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999986 4899999999975 4789999999999999999998765
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=350.30 Aligned_cols=213 Identities=27% Similarity=0.402 Sum_probs=178.2
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~ 157 (679)
+++++|+++++|+|+||++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.+... ..++.++|++
T Consensus 7 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 83 (242)
T TIGR03411 7 GLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKF 83 (242)
T ss_pred eeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEec
Confidence 3344455567999999999999999999999999999999999998763 7999999976432 1245699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLP--R---TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|++.+++.+||+||+.+....... . ....++..++++++++.+|+.+..++. ++.|||||||||+|||||
T Consensus 84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHH
Confidence 999999999999999885432100 0 012234456788999999998766544 457999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999976 789999999965 58889999999999999999987765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=371.74 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=185.3
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c----ccC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H----ISK 151 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~----~~~ 151 (679)
...++.+.++...+|+|+||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+... . .++
T Consensus 30 ~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~ 106 (400)
T PRK10070 30 SKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRK 106 (400)
T ss_pred cHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhC
Confidence 3344566777778999999999999999999999999999999999999864 7999999976432 1 135
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
.++||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++ .++.|||||||||+||||
T Consensus 107 ~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~-----~~~~LSgGq~QRv~LArA 178 (400)
T PRK10070 107 KIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS-----YPDELSGGMRQRVGLARA 178 (400)
T ss_pred CEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc-----CcccCCHHHHHHHHHHHH
Confidence 7999999999999999999999875432 22345556778899999999876554 456799999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+++|++++|++|+++..|+++++.
T Consensus 179 L~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 179 LAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999976 5899999999965 588999999999999999999987763
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=359.82 Aligned_cols=203 Identities=28% Similarity=0.392 Sum_probs=174.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------ccccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------KHISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------~~~~~~i~yv~Q~~-- 160 (679)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP---SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 4699999999999999999999999999999999999986 4799999997642 12356799999996
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.++ .+||.||+.+..... ....++..++++++++.+||. +..++. ++.||||||||++||++|+.+|++|
T Consensus 97 ~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lL 167 (287)
T PRK13641 97 QLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELSGGQMRRVAIAGVMAYEPEIL 167 (287)
T ss_pred hhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEE
Confidence 355 579999998764322 234455667789999999996 455544 5579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 168 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 168 CLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999878999999999965 588999999999999999999988764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=344.92 Aligned_cols=201 Identities=32% Similarity=0.511 Sum_probs=169.0
Q ss_pred Cccccccc--cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEE
Q 005754 83 GSTAKIQE--RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFV 156 (679)
Q Consensus 83 ~~~~~~~~--~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv 156 (679)
+++++|++ +.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+.. ...++.++|+
T Consensus 4 ~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 4 NLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred eEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEcccCCHHHHHhhceEE
Confidence 34455555 6799999999999999999999999999999999999876 4799999987542 1345679999
Q ss_pred ecCCC-CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 157 TQDDI-LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 157 ~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
+|++. .++.+|++||+.+..... .....+..++++++++.+||.+..++. ++.||||||||++|||||+.+
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcC
Confidence 99974 366789999998754322 123344456788899999998655544 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|+++||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999877999999999965 5788899999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=351.09 Aligned_cols=205 Identities=30% Similarity=0.450 Sum_probs=175.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----------ccccCcEEEEe
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----------KHISKRTGFVT 157 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----------~~~~~~i~yv~ 157 (679)
|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+.. ...++.++|++
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVF 88 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEecccccccchhhHHHHHhheEEEe
Confidence 3345699999999999999999999999999999999999876 4799999997531 12356799999
Q ss_pred cCCCCCCCCCHHHHHHHH-hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 158 QDDILYPHLTVRETLVFC-SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
|++.+++.+||.||+.+. .... .....+..++++++++.+||.+..++. ++.||||||||++|||+|+.+|
T Consensus 89 q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 89 QQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999753 2211 123344456788999999998765544 4579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|++++
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999877999999999975 5778999999999999999998765
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=346.49 Aligned_cols=197 Identities=27% Similarity=0.422 Sum_probs=169.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDIL 162 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l 162 (679)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~ 90 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL 90 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEcccCChhHHHHHHhheEEEecCccc
Confidence 35699999999999999999999999999999999999876 47999999975421 135689999999988
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|++||+.+....+ ..+.++..++++++++.+++.+..++ .++.||||||||++||+||+.+|++|+||
T Consensus 91 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllD 162 (222)
T PRK10908 91 LMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQRVGIARAVVNKPAVLLAD 162 (222)
T ss_pred cccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 88999999998865432 12344455667889999999875554 34579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
|||+|||+.+++.+.+.|++++++|.|||++||++. ++..++|++++|++|+++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 163 EPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999877999999999975 5788999999999999853
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=363.89 Aligned_cols=211 Identities=25% Similarity=0.337 Sum_probs=178.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCCCccc----c----ccCcEEEEecCC-
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH-GLTGTILTNNNKPTK----H----ISKRTGFVTQDD- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~-~~~G~i~~~g~~~~~----~----~~~~i~yv~Q~~- 160 (679)
..+|+||||+|++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|++... . .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 469999999999999999999999999999999999987432 258999999986532 1 124699999997
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 -ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 -~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+.|.+||.+++....... .....++.++++.++++.+||.+..+ ..++++++|||||||||+||+||+.+|++|
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 5789999999887654322 12345566778899999999975321 224567899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+||||+|||+.++.++++.|+++++ .|.|+|++|||+. .+.+++|+|++|++|++++.|+++++.
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999986 5999999999975 477899999999999999999988864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=353.43 Aligned_cols=212 Identities=22% Similarity=0.361 Sum_probs=174.9
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|.. ..+|+|.++|.+... ..++.++|++|
T Consensus 21 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 100 (258)
T PRK14268 21 WYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQ 100 (258)
T ss_pred EeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEec
Confidence 3444679999999999999999999999999999999999987421 258999999976421 24567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ +|++||+.+..... ..+..+.+++++++++.+|+.+.... .-+..++.|||||||||+|||||+.+|++
T Consensus 101 ~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~l 175 (258)
T PRK14268 101 KPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSD-RLKSPALSLSGGQQQRLCIARTLAVKPKI 175 (258)
T ss_pred CCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhh-hhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 998888 89999999864332 12344445668889999998422111 11234567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 176 lllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 176 ILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999965 799999999965 57789999999999999999998775
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=356.15 Aligned_cols=209 Identities=24% Similarity=0.398 Sum_probs=176.2
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQD 159 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~ 159 (679)
++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.++|++|+
T Consensus 9 ~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 85 (271)
T PRK13638 9 FRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85 (271)
T ss_pred EEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CccEEEECCEEcccccCCHHHHHhheEEEeeC
Confidence 334456799999999999999999999999999999999999886 4799999997642 1235679999999
Q ss_pred CCC-CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DIL-YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.. +...|+.||+.+..... ....++..++++++++.+||.+..++. ++.||||||||++||++|+.+|++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 86 PEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred hhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHHHHHHHHHHHcCCCE
Confidence 752 34568999998754322 123444556788899999998766554 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|++++..
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999877999999999975 577899999999999999999988764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=351.54 Aligned_cols=215 Identities=25% Similarity=0.343 Sum_probs=177.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCcc----ccccCcEEEEecCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPT----KHISKRTGFVTQDD 160 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~ 160 (679)
+|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|. .+.+|+|.++|.+.. ...++.++|++|++
T Consensus 12 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 91 (250)
T PRK14247 12 SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIP 91 (250)
T ss_pred EECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccC
Confidence 344467999999999999999999999999999999999998742 135899999997643 23456899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||+||+.+....+.. .....+..+.++++++.+||.+.... ..+..+.+||||||||++|||||+.+|++++
T Consensus 92 ~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~p~lll 169 (250)
T PRK14247 92 NPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKD-RLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169 (250)
T ss_pred ccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 888999999999886432211 11334455678899999998642111 1134466899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 170 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 170 ADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999965 899999999975 57789999999999999999998776
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=352.35 Aligned_cols=213 Identities=22% Similarity=0.309 Sum_probs=174.5
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q 158 (679)
+|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+. ..+|+|.++|.+.. ...++.++|++|
T Consensus 16 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 95 (254)
T PRK14273 16 FYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ 95 (254)
T ss_pred EeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEee
Confidence 3444569999999999999999999999999999999999987631 24799999997642 134667999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ +||+||+.+...... .....+.+++++++++.+++.+.... .-+..++.||||||||++|||+|+.+|++
T Consensus 96 ~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~l 171 (254)
T PRK14273 96 TPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKD-KLNTNALSLSGGQQQRLCIARTLAIEPNV 171 (254)
T ss_pred cccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHH-HHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 988885 899999988643321 11233445678888999987421100 11334568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||||+|||+.++..+++.|+++++ +.|||++||++. ++.+++||+++|++|+++..|+++++
T Consensus 172 llLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 172 ILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999964 799999999975 57889999999999999999998875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=352.91 Aligned_cols=206 Identities=31% Similarity=0.455 Sum_probs=175.0
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+... ..+.++|++|++.+++
T Consensus 8 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~-~~~~~~~v~q~~~~~~ 83 (255)
T PRK11248 8 YADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG-PGAERGVVFQNEGLLP 83 (255)
T ss_pred EEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC-CCCcEEEEeCCCccCC
Confidence 33444567999999999999999999999999999999999998763 7899999976532 3346899999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||+||+.+....+ .....+..++++++++.+||.+..++. +..||||||||++||++|+.+|++||||||
T Consensus 84 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEP 155 (255)
T PRK11248 84 WRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAANPQLLLLDEP 155 (255)
T ss_pred CCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999998764322 123444556788999999998765543 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEe--CCeEEEecChh
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLS--EGRCLYFGKGS 303 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~--~G~iv~~G~~~ 303 (679)
|+|||+.++..+.+.|+++++ +|+|||++||++. .+..+||++++|+ +|+++..++.+
T Consensus 156 t~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 156 FGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999864 5899999999975 5789999999998 59999887653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=344.85 Aligned_cols=202 Identities=31% Similarity=0.513 Sum_probs=171.6
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEe
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVT 157 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~ 157 (679)
++++|+++.+|+++|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+.. ...++.++|++
T Consensus 6 l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 82 (213)
T cd03262 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKLTDDKKNINELRQKVGMVF 82 (213)
T ss_pred EEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccchhHHHHHhcceEEe
Confidence 34445556799999999999999999999999999999999999876 4799999997542 12456899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+|++||+.+..... ......+..++++++++.+|+.+..++. ++.||||||||++||++|+.+|+
T Consensus 83 q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ 155 (213)
T cd03262 83 QQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMNPK 155 (213)
T ss_pred cccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998754211 1123444556788999999998765544 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
++||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++
T Consensus 156 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999888999999999975 57889999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=357.17 Aligned_cols=215 Identities=28% Similarity=0.437 Sum_probs=180.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCCC-CC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDDI-LY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~-l~ 163 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ...++.+||++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP---SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 5699999999999999999999999999999999999876 4799999997642 134578999999973 33
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
...||+||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||++|||||+.+|++|||||
T Consensus 96 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 96 FSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4579999998864321 234555567789999999998765544 55799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
||+|||+.++..+.+.|++++++ |+|||++||++. ++.++|||+++|++|++++.|++++..+ .+...+.++|
T Consensus 168 Pt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (283)
T PRK13636 168 PTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLP 244 (283)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 99999999999999999999875 899999999965 4778999999999999999999987654 2334555444
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=351.84 Aligned_cols=210 Identities=28% Similarity=0.424 Sum_probs=178.1
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----------------c
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----------------K 147 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----------------~ 147 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+.. .
T Consensus 7 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~ 83 (252)
T TIGR03005 7 TKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQLYHMPGRNGPLVPADEKHLR 83 (252)
T ss_pred EEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccccccccccccchhHHH
Confidence 3344456799999999999999999999999999999999999876 4789999986542 1
Q ss_pred cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHH
Q 005754 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 148 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
..++.++|++|++.+++.+|+.||+.+..... ......+..+.++++++.+|+.+..+. .++.||||||||++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 84 QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADH-----MPAQLSGGQQQRVA 156 (252)
T ss_pred HHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhc-----ChhhcCHHHHHHHH
Confidence 23568999999999999999999998753211 112344455678899999999875554 45579999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||++|+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999875 899999999975 57789999999999999999987765
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=351.51 Aligned_cols=212 Identities=23% Similarity=0.349 Sum_probs=173.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.. +....+|+|.++|++... ..++.++|++|+
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 95 (253)
T PRK14242 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQK 95 (253)
T ss_pred ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecC
Confidence 334569999999999999999999999999999999999864 211358999999976421 235689999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++ .||+||+.+....+. ....+...++++++++.+|+.+...... ++.++.|||||||||+|||+|+.+|++|
T Consensus 96 ~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~ll 171 (253)
T PRK14242 96 PNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVL 171 (253)
T ss_pred CCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 98888 599999988653321 1123344567888999999854221111 3456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 172 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 172 LMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999954 799999999975 57889999999999999999988765
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=351.69 Aligned_cols=215 Identities=25% Similarity=0.376 Sum_probs=177.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCcc------ccccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPT------KHISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~ 159 (679)
|+++++|+|+|+++++||+++|+||||||||||+++|+|+++|+ ...+|+|.++|.+.. ...++.++|++|+
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93 (253)
T ss_pred eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecC
Confidence 33456999999999999999999999999999999999998763 125899999997643 1345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++.+||.||+.+....+. ...+.++..++++++++.+|+.+.... .-+..++.||||||||++|||||+.+|+++
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKD-RLNDYPSNLSGGQRQRLVIARALAMKPKIL 171 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhh-hhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999987653221 011234445667889999998532111 113456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 172 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 172 LMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999975 699999999975 578899999999999999999987753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=354.17 Aligned_cols=210 Identities=29% Similarity=0.484 Sum_probs=176.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD 160 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~ 160 (679)
+++|+++.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 9 ~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (258)
T PRK13548 9 SVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWSPAELARRRAVLPQHS 85 (258)
T ss_pred EEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcccCCHHHhhhheEEEccCC
Confidence 3344456799999999999999999999999999999999999876 47999999975422 2356799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh------h
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML------I 234 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~------~ 234 (679)
.+++.+||+||+.+..... ....++..++++++++.+||.+..++. +..|||||||||+||++|+ .
T Consensus 86 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 86 SLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred cCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCC
Confidence 8888899999998754221 112233445678899999998765554 4579999999999999999 5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999999999999999998 57999999999965 577899999999999999999887653
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=349.22 Aligned_cols=215 Identities=30% Similarity=0.361 Sum_probs=175.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc----c-ccCcEEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK----H-ISKRTGF 155 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~----~-~~~~i~y 155 (679)
+++++|+++.+|+|+|++|++||+++|+||||||||||||+|+|+. +| .+|+|.++|.+... . .+..++|
T Consensus 5 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 5 DLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred eEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCHHHhhccceEe
Confidence 3444555567999999999999999999999999999999999985 33 47999999976432 1 2345899
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCC--C--CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLP--R--TLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~--~--~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++|++.+++.+|++|++.+....... . ..+..+..++++++++.+||.+ ..++.+. ..||||||||++||+
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQ 157 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHH
Confidence 99999999999999999875432110 0 1123344567889999999973 4443322 249999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||++++|++|++++.|+++++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELA 232 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHh
Confidence 999999999999999999999999999999999878999999999975 46677 899999999999999988754
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=346.82 Aligned_cols=198 Identities=32% Similarity=0.465 Sum_probs=165.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--CC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--IL 162 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~l 162 (679)
.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 699999999999999999999999999999999999876 47899999976432 3456899999998 56
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSI-AEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
++.+||+||+.+....... ....+..+. ++++++.+++. +..+. .+..||||||||++|||+|+.+|++||
T Consensus 96 ~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lll 168 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSGGQRQRVAIARALALNPKLLI 168 (228)
T ss_pred CCcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 7789999999876433211 112222222 36789999995 44443 445799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||||+|||+.+++.+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999876 899999999975 577799999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=367.01 Aligned_cols=212 Identities=24% Similarity=0.379 Sum_probs=184.7
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC----Ccc----c---cc-c
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN----KPT----K---HI-S 150 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~----~~~----~---~~-~ 150 (679)
...++++...+|+|+||+|++||+++|+||||||||||+++|+|+++| .+|+|.++|+ +.. . .. +
T Consensus 29 ~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p---~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 29 EILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV---SRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEecccccccCCHHHHHHHhc
Confidence 345678889999999999999999999999999999999999999986 4799999985 221 1 12 2
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
++++||+|++.++|.+||+||+.++...+ ..++.+.+++++++++.+||.+..+.. +..|||||||||+|||
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLAR 177 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHH
Confidence 57999999999999999999999875432 234566677889999999998766554 4579999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++|||+. ++.+++||+++|++|+++..|+++++.
T Consensus 178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 178 AFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999875 999999999965 588999999999999999999998764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=351.62 Aligned_cols=211 Identities=25% Similarity=0.371 Sum_probs=176.1
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEecCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQDD 160 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q~~ 160 (679)
++|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... . .+..++|++|++
T Consensus 13 ~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 89 (255)
T PRK11300 13 MRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHIEGLPGHQIARMGVVRTFQHV 89 (255)
T ss_pred EEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEECCCCCHHHHHhcCeEEeccCc
Confidence 334456799999999999999999999999999999999999876 47999999976432 1 234689999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCC----------CCC--CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHH
Q 005754 161 ILYPHLTVRETLVFCSLLRLP----------RTL--STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSI 228 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I 228 (679)
.+++.+||+||+.+....... ... ...+..+.++++++.+||.+..++. ++.||||||||++|
T Consensus 90 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~l 164 (255)
T PRK11300 90 RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ-----AGNLAYGQQRRLEI 164 (255)
T ss_pred ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC-----hhhCCHHHHHHHHH
Confidence 999999999999985421100 000 1123345678889999998765544 45799999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 229 AHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 229 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 165 a~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHH
Confidence 99999999999999999999999999999999999875 899999999965 57899999999999999999988765
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=355.98 Aligned_cols=203 Identities=29% Similarity=0.425 Sum_probs=175.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCC-CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDI-LYP 164 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~-l~~ 164 (679)
+.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+.. ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 5699999999999999999999999999999999999876 4799999997653 234567999999975 366
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
..|+.||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||++||+||+.+|++||||||
T Consensus 92 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 92 GRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred cchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 689999998764322 234555566788999999998766654 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||+.++..+.+.|++++++|.|||++||++. ++ ..||++++|++|++++.|++++..
T Consensus 164 t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 164 TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999878999999999976 45 579999999999999999988763
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=344.13 Aligned_cols=205 Identities=32% Similarity=0.460 Sum_probs=175.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY 163 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~ 163 (679)
++++++++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+......+.++|++|++.++
T Consensus 6 v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~ 82 (223)
T TIGR03740 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGHPWTRKDLHKIGSLIESPPLY 82 (223)
T ss_pred EEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeccccccccEEEEcCCCCcc
Confidence 34445556799999999999999999999999999999999999876 479999999765432235799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|++||+.+....+. .. .+++.++++.+||.+..+.. +..||||||||++|||+|+.+|++++|||
T Consensus 83 ~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 83 ENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred ccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999999987654321 11 23577889999998765544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|++.+
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999878999999999975 5788999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=353.30 Aligned_cols=211 Identities=26% Similarity=0.426 Sum_probs=177.0
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI 161 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~ 161 (679)
++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|+..
T Consensus 10 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 86 (255)
T PRK11231 10 VGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSRQLARRLALLPQHHL 86 (255)
T ss_pred EEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEEEECCEEhHHCCHHHHhhheEEecccCC
Confidence 344456799999999999999999999999999999999999876 47899999976422 34567999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++.+|+.||+.++...... ......+..++++++++.+||.+..++. ++.||||||||++||+||+.+|++||
T Consensus 87 ~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 87 TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88889999999875311000 0111233445678899999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 162 LDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999877999999999975 58899999999999999999987765
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=352.62 Aligned_cols=196 Identities=30% Similarity=0.432 Sum_probs=169.5
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+++.+|+|+|++|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+. ...++.++|++|++.+++.+||
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~-~~~~~~i~~v~q~~~l~~~~tv 98 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGTAPL-AEAREDTRLMFQDARLLPWKKV 98 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEH-HHhhCceEEEecCccCCCCCcH
Confidence 345699999999999999999999999999999999999876 379999988654 2346789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
+||+.+... . ...++++++++.+||.+..+.. +..||||||||++||++|+.+|+++||||||+||
T Consensus 99 ~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 99 IDNVGLGLK-------G--QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred HHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 999987421 0 1235678899999998765543 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChh
Q 005754 249 DSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
|+.++..+.+.|+++.+ .|+|||++||++. .+.++||++++|++|++++.|+.+
T Consensus 165 D~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 165 DALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999865 5899999999975 577899999999999999887653
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=349.16 Aligned_cols=211 Identities=30% Similarity=0.428 Sum_probs=182.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC-CC-CCeeeEEEECCCCcc---c-c----ccCcEEEEecCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH-QG-HGLTGTILTNNNKPT---K-H----ISKRTGFVTQDD 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~-~~-~~~~G~i~~~g~~~~---~-~----~~~~i~yv~Q~~ 160 (679)
..+++||||++++||++||+|.|||||||+.++|.|+++ +. ...+|+|.++|++.. + + ..+.|++|||++
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 569999999999999999999999999999999999997 32 236789999998642 1 1 235799999996
Q ss_pred --CCCCCCCHHHHHHHHhhhcCCCCC-CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 161 --ILYPHLTVRETLVFCSLLRLPRTL-STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 161 --~l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
.|-|.+||.+.+.-..... ... .+++.++++.++|+.+||.+... +.+.++++|||||||||.||.||+.+|+
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCC
Confidence 6889999999887655432 122 45677888999999999986422 4567999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||.||||++||...+.+|+++|+++++ .|.++|++|||+. -+.++||||.||..|++|+.|+.+++.
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 9999999999999999999999999987 5999999999976 589999999999999999999998764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=354.84 Aligned_cols=214 Identities=27% Similarity=0.410 Sum_probs=180.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC-CCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD-ILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~-~l~~~ 165 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++ .+++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP---EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 4699999999999999999999999999999999999986 47999999976532 3456799999997 36777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||.||+.+..... ..+.++.+++++++++.+||.+..++. ++.||||||||++||++|+.+|++|||||||
T Consensus 97 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 97 ATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred ccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998864332 234455567789999999998766654 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
+|||+.++..+++.|++++++ |+|||++||++. ++. .||++++|++|++++.|+++++.+ .+...+..+|
T Consensus 169 ~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999999876 899999999975 454 599999999999999999887653 3444455433
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=354.01 Aligned_cols=203 Identities=30% Similarity=0.419 Sum_probs=172.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCC--
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDD-- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~-- 160 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 4699999999999999999999999999999999999876 47999999975421 2456799999996
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..+. .++.||||||||++||+||+.+|++|
T Consensus 97 ~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~ll 167 (280)
T PRK13649 97 QLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELSGGQMRRVAIAGILAMEPKIL 167 (280)
T ss_pred hhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 4555 69999998764322 1234455567888999999973 3443 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.+++.+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 168 VLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999877999999999975 578899999999999999999988763
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=355.01 Aligned_cols=207 Identities=29% Similarity=0.430 Sum_probs=177.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+++|+|+|++|++||+++|+||||||||||+++|+|+++|+.+..|+|.++|.+... ..++.+||++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 459999999999999999999999999999999999998765456999999986532 34568999999974 6777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||+||+.|..... ..+.++..++++++++.+||.+..++ .++.||||||||++||+||+.+|++|||||||
T Consensus 100 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~qrv~laral~~~P~llllDEPt 171 (282)
T PRK13640 100 ATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDEST 171 (282)
T ss_pred CCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 89999998754321 23455666778999999999876554 45679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|+++++.+
T Consensus 172 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999865 9999999999764 5 5799999999999999999987643
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=342.79 Aligned_cols=194 Identities=32% Similarity=0.506 Sum_probs=165.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c---cc-CcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H---IS-KRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~---~~-~~i~yv~Q~~~l 162 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... . .+ +.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 4699999999999999999999999999999999999876 47999999976432 1 12 579999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+ .....+..+++.++++.+||.+..++. ++.||||||||++|||+|+.+|++||||
T Consensus 95 ~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~illlD 166 (221)
T TIGR02211 95 LPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGERQRVAIARALVNQPSLVLAD 166 (221)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999998864332 123334456778999999998765544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||+|||+.++..+.+.|++++++ |+|||++||++. .+ ..+|++++|++|+++
T Consensus 167 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 167 EPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999999999999864 899999999975 45 458999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=348.28 Aligned_cols=213 Identities=23% Similarity=0.328 Sum_probs=174.3
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc---CCCCCeeeEEEECCCCccc------cccCcEEEEe
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL---HQGHGLTGTILTNNNKPTK------HISKRTGFVT 157 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~---~~~~~~~G~i~~~g~~~~~------~~~~~i~yv~ 157 (679)
+|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++ ...+|+|.++|.+... ..++.++|++
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 90 (250)
T PRK14245 12 WYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA-TRLEGEIRIDGRNIYDKGVQVDELRKNVGMVF 90 (250)
T ss_pred EECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC-CCCceEEEECCEecccccccHHHHhhheEEEe
Confidence 344567999999999999999999999999999999999973 32 1247999999976532 3456799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++ .|+.||+.+....+. ....+...+.++++++.+||.+...... +..++.||||||||++|||+|+.+|+
T Consensus 91 q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~ 166 (250)
T PRK14245 91 QRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPS 166 (250)
T ss_pred cCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9998887 699999987644321 1122334566788999999864321111 24466899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
++||||||+|||+.++..+.+.|++++ +++|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 167 lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 167 VLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999995 4799999999975 578899999999999999999988763
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=400.03 Aligned_cols=219 Identities=27% Similarity=0.406 Sum_probs=190.6
Q ss_pred cCCCCcccccc--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcE
Q 005754 79 TDDQGSTAKIQ--ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i 153 (679)
+..++++++|+ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..++.+
T Consensus 929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcE
Confidence 34456666663 467999999999999999999999999999999999999864 7999999976532 346789
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 154 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
||++|++.+++.+||+||+.+.+.++. .+.++.+++++++++.+||++.+|+.+ ++|||||||||+||+||+
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999766542 234455677899999999988766554 579999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
.+|+++||||||+|||+.+++.+.++|++++ +|+|||++||++. ++..++||+++|++|+++..|++.++.+.|.
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 9999999999999999999999999999995 5999999999965 6888999999999999999999999887663
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=354.10 Aligned_cols=204 Identities=31% Similarity=0.490 Sum_probs=175.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... ..++.++|++|++. .+..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFS 93 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHhheEEEecCccccccc
Confidence 4599999999999999999999999999999999999886 47999999976432 34567999999973 3345
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||.||+.+..... ....+...++++++++.+||.+..++. ++.||||||||++||+||+.+|++|||||||
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrl~laraL~~~p~llilDEPt 165 (277)
T PRK13652 94 PTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT 165 (277)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 79999998754321 234455566788999999998766554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||+.++..+.+.|++++++ |.|||++||++. ++.+.|||+++|++|++++.|++++..
T Consensus 166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 166 AGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999875 899999999975 578899999999999999999998874
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=365.43 Aligned_cols=208 Identities=30% Similarity=0.467 Sum_probs=178.6
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~y 155 (679)
++++|+++. + |+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|
T Consensus 5 l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 5 FSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP---DEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECccCccccccchhhCCeEE
Confidence 445666555 4 99999999999999999999999999999999886 37999999976421 23567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.+++.+||+||+.|+.... ...+.+++++++++.+||.+..++. ++.|||||||||+|||||+.+
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999865321 2234456788999999998766554 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..++|++++|++|+++..|+++++..
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 9999999999999999999999999999875 899999999975 5888999999999999999999887643
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=353.07 Aligned_cols=213 Identities=24% Similarity=0.363 Sum_probs=176.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~ 159 (679)
++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.. ...++.++|++|+
T Consensus 17 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 93 (265)
T PRK10575 17 VSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQPLESWSSKAFARKVAYLPQQ 93 (265)
T ss_pred EEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEehhhCCHHHHhhheEEeccC
Confidence 33344456799999999999999999999999999999999999876 4799999997542 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+++.+||.||+.+........ ........++++++++.++|.+..++. ++.|||||||||+||+||+.+|++
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 94 LPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred CCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 88889999999998753211000 011123345688999999998755554 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999765 899999999965 57889999999999999999987765
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=348.12 Aligned_cols=215 Identities=22% Similarity=0.368 Sum_probs=176.8
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv~ 157 (679)
++|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+ |+.+.+|+|.++|.+.. ...++.++|++
T Consensus 12 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~ 91 (252)
T PRK14256 12 VHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVF 91 (252)
T ss_pred EEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEe
Confidence 34444679999999999999999999999999999999999975 32235799999997642 13467899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+|++||+.+..... ......+.+++++++++.+++.+...... +..++.||||||||++||++|+.+|+
T Consensus 92 q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~ 168 (252)
T PRK14256 92 QKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPE 168 (252)
T ss_pred cCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998754321 11223444566888999999864211111 23466899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 169 llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 169 VILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999976 689999999965 57899999999999999999998775
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=351.55 Aligned_cols=213 Identities=32% Similarity=0.467 Sum_probs=178.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc------cccCcEEEEecCCC-CC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK------HISKRTGFVTQDDI-LY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~~~-l~ 163 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP---TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 4699999999999999999999999999999999999876 37999999976421 23567999999963 33
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
...||.||+.+..... ...+++..+++.++++.+||.+..++. ++.||||||||++||++|+.+|++++|||
T Consensus 92 ~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~llllDE 163 (275)
T PRK13639 92 FAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDE 163 (275)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3479999998754321 223455566788999999998766654 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFS 315 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~ 315 (679)
||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|++++..+ ..+..|..
T Consensus 164 Pt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 237 (275)
T PRK13639 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRKANLR 237 (275)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcChHHHHhcCCC
Confidence 99999999999999999999877999999999965 5778999999999999999999988643 33444544
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=361.04 Aligned_cols=213 Identities=22% Similarity=0.269 Sum_probs=175.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc----c----ccCcEEEEecCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK----H----ISKRTGFVTQDDI 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~----~----~~~~i~yv~Q~~~ 161 (679)
+.+|+||||+|++||+++|+|+||||||||+++|+|+.++. ...+|+|.++|++... . .++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 56999999999999999999999999999999999998642 1358999999976421 1 1347999999975
Q ss_pred --CCCCCCHHHHHHHHhhhcCCC--C-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 162 --LYPHLTVRETLVFCSLLRLPR--T-LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 162 --l~~~lTV~E~l~~~~~~~~~~--~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+.|.+||.+++.......... . ....+.++++.++|+.+||.+..+ ..++++++|||||||||+||+||+.+|
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P 177 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQP 177 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCC
Confidence 678899999997642211000 0 112344567889999999975322 224567889999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
++|||||||+|||+.++.+++++|+++.++ |.|||++|||+. .+.+++|++++|++|++++.|+++++.
T Consensus 178 ~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 178 RLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999875 999999999965 578999999999999999999987763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=346.79 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=178.0
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEe
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVT 157 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~ 157 (679)
+++++.|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++....+|+|.++|++... ..++.++|++
T Consensus 6 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~ 85 (246)
T PRK14269 6 TNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVF 85 (246)
T ss_pred eeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEe
Confidence 344455556679999999999999999999999999999999999875322358999999976532 3456799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++ .||+||+.+....+.. ........++++++++.++|.+..... -++.++.||||||||++|||+|+.+|+
T Consensus 86 q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~ 162 (246)
T PRK14269 86 QQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDK-LKQNALALSGGQQQRLCIARALAIKPK 162 (246)
T ss_pred cCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHH-hcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9998887 6999999886433210 011233445678899999995321111 133456899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+++|||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 163 lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 163 LLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999865 899999999965 57889999999999999999988775
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=350.75 Aligned_cols=213 Identities=30% Similarity=0.450 Sum_probs=177.5
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~ 159 (679)
+++.|+++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|+
T Consensus 7 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 83 (256)
T TIGR03873 7 VSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTVDLAGVDLHGLSRRARARRVALVEQD 83 (256)
T ss_pred EEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEEcccCCHHHHhhheEEeccc
Confidence 34445556799999999999999999999999999999999999876 37899999976432 335579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+++.+||.||+.+....... ......+..++++++++.+++.+..++. +..||||||||++||++|+.+|++
T Consensus 84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 84 SDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred CccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 8878889999999875311000 0011223345688899999998765554 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|+.++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9999999999999999999999999877999999999975 57899999999999999999988765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=351.89 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=174.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD-- 160 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~-- 160 (679)
++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 35799999999999999999999999999999999999876 47999999976431 1356799999996
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++.+||+||+.+..... ......+..++++++++.+||. +..+. .++.|||||||||+|||||+.+|++|
T Consensus 100 ~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LSgGe~qrv~laral~~~p~il 172 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLSGGQLQRINIARALAVKPKLI 172 (265)
T ss_pred hcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 4677899999998754311 1123334456788999999996 44444 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.|+++++.
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 173 VLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 999999999999999999999999875 899999999965 577899999999999999999988753
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=349.52 Aligned_cols=210 Identities=25% Similarity=0.361 Sum_probs=173.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+|++|++||+++|+||||||||||+++|+|+.+ |..+.+|+|.++|.+.. ...+++++|++|++.
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 3569999999999999999999999999999999999986 22235899999997642 134668999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++ .||+||+.+...... ..+.++..++++++++.+++.+...... ++.+..||||||||++|||||+.+|++|||
T Consensus 105 ~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllL 180 (260)
T PRK10744 105 PFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLL 180 (260)
T ss_pred cCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 887 899999987643221 1234455567889999999853111111 234568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.+++.+.+.|+++++ +.|||++||++. .+.+++|++++|++|+++..|+++++
T Consensus 181 DEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 181 DEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999964 789999999975 57789999999999999999998775
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=348.46 Aligned_cols=216 Identities=22% Similarity=0.334 Sum_probs=176.8
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~ 157 (679)
++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|+. +.+|+|.++|.+.. ...++.++|++
T Consensus 12 ~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~ 91 (258)
T PRK14241 12 IYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVF 91 (258)
T ss_pred EEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEc
Confidence 33444679999999999999999999999999999999999986421 25899999997642 13456799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||+||+.+....+. ..+.++.+++++++++.+||.+..... -+..+++|||||||||+|||||+.+|+
T Consensus 92 q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~ 168 (258)
T PRK14241 92 QRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDR-LDKPGGGLSGGQQQRLCIARAIAVEPD 168 (258)
T ss_pred cccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999987654321 113344556788899999984211111 123456899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe------CCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS------EGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~ 306 (679)
+|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++++.|++++..
T Consensus 169 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 169 VLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999999999999999999999964 689999999965 5788999999997 79999999988763
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=359.31 Aligned_cols=205 Identities=29% Similarity=0.436 Sum_probs=177.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
..+|+|||++|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... ..++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP---TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 5699999999999999999999999999999999999876 37999999976422 2456899999997 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+.|.+||.+++....... ....+.+.++++.++++.+||.+ .. ++++++|||||||||+|||||+.+|++||
T Consensus 105 l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~-----~~~p~~LSgGq~QRv~iArAL~~~P~lLi 177 (327)
T PRK11308 105 LNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHY-----DRYPHMFSGGQRQRIAIARALMLDPDVVV 177 (327)
T ss_pred cCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHh-----cCCCccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 889999999998754432 12345566778899999999963 33 45677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||+|||..++.+++++|+++.++ |.|||++|||.. .+.++||+|++|++|++++.|+++++.
T Consensus 178 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 178 ADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999874 999999999965 577899999999999999999988874
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=346.72 Aligned_cols=217 Identities=23% Similarity=0.350 Sum_probs=176.2
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCcEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~i~y 155 (679)
++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+.+.+|+|.++|.+... ..++.++|
T Consensus 11 l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 90 (251)
T PRK14244 11 LNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGM 90 (251)
T ss_pred EEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEE
Confidence 3344555679999999999999999999999999999999999875 221358999999976421 24668999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.+++. ||.||+.+....+ .......+.++.++++++.+||.+...+.. +..++.||||||||++|||+|+.+
T Consensus 91 v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~ 167 (251)
T PRK14244 91 VFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVK 167 (251)
T ss_pred EecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999988886 9999998764332 111123344456788999999965221111 234668999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 168 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 168 PTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999964 899999999975 57889999999999999999988765
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=352.35 Aligned_cols=210 Identities=25% Similarity=0.403 Sum_probs=176.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILY 163 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~ 163 (679)
|+++.+|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 17 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 93 (265)
T PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKEVARRIGLLAQNATTP 93 (265)
T ss_pred ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEEEECCEEhhhCCHHHHhhheEEeeccCcCC
Confidence 3446799999999999999999999999999999999999876 37899999976422 3356799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 164 PHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+.+|++||+.+......+. ....+...++++++++.+||.+..++ .++.||||||||++|||||+.+|+++|||
T Consensus 94 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllD 168 (265)
T PRK10253 94 GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQRAWIAMVLAQETAIMLLD 168 (265)
T ss_pred CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999998753111000 00112334567889999999875554 45579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.++..+.+.|++++++ |.|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 169 EPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 169 EPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999874 899999999975 588999999999999999999987754
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=363.76 Aligned_cols=203 Identities=29% Similarity=0.466 Sum_probs=175.4
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~y 155 (679)
++++|+++. + |+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.+... ..++.++|
T Consensus 6 l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (352)
T PRK11144 6 FKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGY 80 (352)
T ss_pred EEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEE
Confidence 345565543 3 899999999999999999999999999999998863 7999999875421 23578999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|+..+++.+||+||+.+... ....++++++++.+||.+..++. ++.|||||||||+|||||+.+
T Consensus 81 v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 81 VFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred EcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999987532 12245688999999998765544 557999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|+++++.
T Consensus 147 p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999999999999999999999999999875 899999999975 688999999999999999999998874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=347.99 Aligned_cols=217 Identities=24% Similarity=0.355 Sum_probs=176.8
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTG 154 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~ 154 (679)
+++++|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |....+|+|.++|.+.. ...++.++
T Consensus 17 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 96 (259)
T PRK14274 17 GMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIG 96 (259)
T ss_pred eEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceE
Confidence 33334445679999999999999999999999999999999999986 32124799999997642 13456799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++|++.+++. ||+||+.+....+ ....+.+..++++++++.+++.+..... -+..+++||||||||++||++|+.
T Consensus 97 ~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LS~Gq~qrv~laral~~ 172 (259)
T PRK14274 97 MVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQALSLSGGQQQRLCIARALAT 172 (259)
T ss_pred EEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhh-hhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999988885 9999998764322 1112344456678899999986421111 134566899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+++..|+++++
T Consensus 173 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 173 NPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999965 799999999965 57889999999999999999998875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=345.96 Aligned_cols=207 Identities=28% Similarity=0.407 Sum_probs=188.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cc-cCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HI-SKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~-~~~i~yv~Q~ 159 (679)
.+...-++|+|++|+.||++.|||-||||||||+++|.++++| +.|+|+++|.++.. ++ ++++++|||.
T Consensus 38 tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep---t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~ 114 (386)
T COG4175 38 TGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP---TRGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114 (386)
T ss_pred hCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC---CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhh
Confidence 3445578999999999999999999999999999999999987 48999999987532 22 4579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
..|+|+.||.||..|+...+ ..+++++++++.++|+.+||....+ +++++|||||||||.|||||+.+|+||
T Consensus 115 FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~-----~yp~eLSGGMqQRVGLARAla~~~~Il 186 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYAD-----KYPNELSGGMQQRVGLARALANDPDIL 186 (386)
T ss_pred hccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhh-----cCcccccchHHHHHHHHHHHccCCCEE
Confidence 99999999999999998764 5688999999999999999998665 567789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||+|+|||--+.++.+.|.+|.++ ++|||++|||.. |.+++.|||.+|++|+++..|+|+|++
T Consensus 187 LMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999999999765 899999999965 689999999999999999999999975
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=352.00 Aligned_cols=214 Identities=25% Similarity=0.406 Sum_probs=178.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCC-CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDI-LYP 164 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~-l~~ 164 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.+||++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP---SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 5699999999999999999999999999999999999886 47999999976532 34678999999974 233
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
..||.||+.|..... ..++.+.+++++++++.+||.+..++. ++.||||||||++||++|+.+|+++|||||
T Consensus 100 ~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 171 (280)
T PRK13633 100 ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQKQRVAIAGILAMRPECIIFDEP 171 (280)
T ss_pred cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 469999998864321 234455567789999999998766654 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
|+|||+.++..+.+.|++++++ |.|||++||++.. +.. ||++++|++|++++.|++++... .+...++..|
T Consensus 172 t~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 246 (280)
T PRK13633 172 TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVMEGTPKEIFKEVEMMKKIGLDVP 246 (280)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEecCHHHHhcChHHHHhcCCCCC
Confidence 9999999999999999999764 9999999999764 554 99999999999999999988753 2334555544
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=343.78 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=173.3
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEec
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQ 158 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q 158 (679)
++++|+++++|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|
T Consensus 6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 82 (230)
T TIGR03410 6 LNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDITKLPPHERARAGIAYVPQ 82 (230)
T ss_pred EEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHHHHHHhCeEEecc
Confidence 34445556799999999999999999999999999999999999886 47999999876421 12467999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+|+.||+.+....+. .. ..+..+++++.++ +.+..++ .++.||||||||++||++|+.+|+
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 83 GREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred CCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999987643321 11 1234566777776 4544443 455799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999875 899999999965 57889999999999999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=349.19 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=178.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++. +++.
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVG 98 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHhheeEEEeChHHhccc
Confidence 4589999999999999999999999999999999999876 47999999976532 34668999999974 6778
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.|+.+|+.+..... ....++..++++++++.+|+.+..++. ++.||||||||++|||||+.+|+++||||||
T Consensus 99 ~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt 170 (269)
T PRK13648 99 SIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVAIAGVLALNPSVIILDEAT 170 (269)
T ss_pred ccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998864321 123445556788999999998765543 5579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
+|||+.++..+.+.|++++++ |+|||++||++.. +.. +|++++|++|++++.|++++..+ .+...|.++|
T Consensus 171 ~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 171 SMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 999999999999999999765 8999999999764 554 99999999999999999887633 3344454443
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=338.88 Aligned_cols=193 Identities=32% Similarity=0.469 Sum_probs=165.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 99999999999999999999999999999999876 47999999976432 23467999999999999999999998
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
+....+. . ..++.+++++++++.+||.+..++. +..||||||||++||++|+.+|+++||||||+|||+.++
T Consensus 93 ~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~ 164 (211)
T cd03298 93 LGLSPGL--K-LTAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164 (211)
T ss_pred ccccccc--C-ccHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 7543111 1 1223455688999999998765554 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 254 YRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 254 ~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
..+.+.|+++++ .|.|||++||++. ++.++||++++|++|+++..|
T Consensus 165 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 999999999976 4899999999965 577899999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=334.10 Aligned_cols=196 Identities=39% Similarity=0.636 Sum_probs=165.6
Q ss_pred EEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 005754 45 TLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 45 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L 124 (679)
+++|+|++|.++.+. +++.+|+|+|+++++||+++|+||||||||||+++|
T Consensus 3 ~~~~~~~~~~~~~~~-----------------------------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l 53 (202)
T cd03233 3 TLSWRNISFTTGKGR-----------------------------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKAL 53 (202)
T ss_pred eEEEEccEEEeccCC-----------------------------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHh
Confidence 589999999886421 246799999999999999999999999999999999
Q ss_pred hcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC
Q 005754 125 AGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG 201 (679)
Q Consensus 125 ~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 201 (679)
+|+++|....+|+|.++|.+... ..++.++|++|++.+++.+||+||+.+.....
T Consensus 54 ~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------- 111 (202)
T cd03233 54 ANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------- 111 (202)
T ss_pred cccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc----------------------
Confidence 99987422358999999976532 34668999999999999999999998753210
Q ss_pred CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHH
Q 005754 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSR 280 (679)
Q Consensus 202 L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~ 280 (679)
. +..+..||||||||++||+||+.+|+++||||||+|||+.+++.+.+.|++++++ +.|+|+++|+..++
T Consensus 112 ----~-----~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~ 182 (202)
T cd03233 112 ----G-----NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDE 182 (202)
T ss_pred ----c-----ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 1 2334579999999999999999999999999999999999999999999999875 67777777665556
Q ss_pred HHHhCCeEEEEeCCeEEEec
Q 005754 281 VYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 281 i~~~~D~v~lL~~G~iv~~G 300 (679)
+.+.||++++|++|++++.|
T Consensus 183 ~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 183 IYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhCCeEEEEECCEEEecC
Confidence 88999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=349.15 Aligned_cols=213 Identities=24% Similarity=0.356 Sum_probs=174.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|. ...+|+|.++|.+... ..++.++|++|+
T Consensus 29 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 108 (267)
T PRK14235 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQK 108 (267)
T ss_pred ECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecC
Confidence 33456999999999999999999999999999999999998642 1258999999976421 245679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++. ||.||+.+....+. ...+..+..++++++++.+||.+...... +..++.||||||||++|||+|+.+|++|
T Consensus 109 ~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~ll 185 (267)
T PRK14235 109 PNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVI 185 (267)
T ss_pred CCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 988875 99999988654321 11123344567888999999964211111 2346689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+++..|+++++
T Consensus 186 lLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 186 LMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999976 789999999965 57789999999999999999988765
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=345.96 Aligned_cols=212 Identities=25% Similarity=0.369 Sum_probs=173.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|.+.. ...++.++|++|+
T Consensus 15 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 94 (252)
T PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94 (252)
T ss_pred ECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecC
Confidence 334569999999999999999999999999999999999853 42224799999997642 1245679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++ +||+||+.+....+ . ........++++++++.+++.+.... ..++.++.||||||||++||+||+.+|++|
T Consensus 95 ~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14239 95 PNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKD-RLHDSALGLSGGQQQRVCIARVLATSPKII 170 (252)
T ss_pred CccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHH-HHhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 98887 89999998764332 1 11233345667888999987532111 113456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 171 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 171 LLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred EEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999965 689999999965 58889999999999999999998875
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=342.97 Aligned_cols=210 Identities=30% Similarity=0.477 Sum_probs=179.6
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.+... ..++.++|++|++.+
T Consensus 7 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~ 83 (237)
T TIGR00968 7 SKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQDATRVHARDRKIGFVFQHYAL 83 (237)
T ss_pred EEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChhhcCEEEEecChhh
Confidence 3445556799999999999999999999999999999999999876 47999999976532 235679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|+.||+.+....+ ........+.++++++.+++.+..++. ++.||||||||++||++|+.+|++++||
T Consensus 84 ~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 84 FKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred ccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998765432 123334456778999999997655544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+.++..
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999876 899999999975 578899999999999999999987753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=337.62 Aligned_cols=201 Identities=31% Similarity=0.507 Sum_probs=171.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTG 154 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~ 154 (679)
+++++|+++.+ |+|+++++ |+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ..++.++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEE
Confidence 45677877766 99999999 999999999999999999999998763 7899999875421 2356799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++|++.+++.+|++||+.+..... .....+++++++++.+|+.+..++ .++.||||||||++||++|+.
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998764321 233345668889999999865554 345799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
+|++++|||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+++|++++|++|+++..|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999875 899999999965 577899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=350.92 Aligned_cols=203 Identities=29% Similarity=0.460 Sum_probs=174.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 5699999999999999999999999999999999999876 47999999976532 34678999999974 6777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+||+||+.+..... ....++..++++++++.+||.+..++. ++.||||||||++|||||+.+|++|+|||||
T Consensus 99 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 99 ATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998764321 123444556789999999998766554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|||+.++..+++.|++++++ ++|||++||++.. + ..||++++|++|+++..|++++..
T Consensus 171 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 171 SMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999876 5999999999764 5 479999999999999999887754
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=340.68 Aligned_cols=209 Identities=29% Similarity=0.440 Sum_probs=179.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
+++++.+.+|+|+|+++++||+++|+||||||||||+++|+|.++| ..|+|.++|.+... ..++.++|++|++.+
T Consensus 7 ~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~---~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (232)
T cd03300 7 SKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP---TSGEILLDGKDITNLPPHKRPVNTVFQNYAL 83 (232)
T ss_pred EEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEcCcCChhhcceEEEeccccc
Confidence 3444556799999999999999999999999999999999999986 37899999976532 235689999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|+.||+.+....+ ..+.....+.++++++.+|+.+..++. +..||||||||++|||+|+.+|+++|||
T Consensus 84 ~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 84 FPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998765432 123344556788899999998766654 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||+.++..+.+.|++++++ |+|||+++|++. ++.++||++++|++|++++.|+.++.
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999875 899999999965 57889999999999999999987665
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=341.78 Aligned_cols=203 Identities=31% Similarity=0.472 Sum_probs=173.9
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEe-cCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVT-QDDI 161 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~-Q~~~ 161 (679)
++|+.+++|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+.. ...++.++|++ |++.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP---TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 556778899999999999999999999999999999999999886 4799999987532 23456899998 5567
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||+||+.+....+ ....++..++++++++.+||.+..++.+ +.||||||||++||++|+.+|+++||
T Consensus 106 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llll 177 (236)
T cd03267 106 LWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFL 177 (236)
T ss_pred cCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999998865432 1234445567788999999987776654 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999765 899999999975 578899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=324.97 Aligned_cols=206 Identities=29% Similarity=0.487 Sum_probs=177.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
+|++|++||++++|||+++|+||||||||||||.|+|...|+ +|++.+||.+... ++.+.-+.+||+..+-..
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 577999999999999999999999999999999999988764 7899999987643 456678999999877555
Q ss_pred CCHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh------CCC
Q 005754 166 LTVRETLVFCSLLRLPRTL--STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI------NPS 237 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~------~P~ 237 (679)
.||+|.+.++.. |... ...+..+.+++.|...++.+.+.+ ....|||||||||.+||.|+. +++
T Consensus 90 Ftv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----~y~~LSGGEqQRVqlARvLaQl~~~v~~~r 161 (259)
T COG4559 90 FTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGR-----DYRTLSGGEQQRVQLARVLAQLWPPVPSGR 161 (259)
T ss_pred eEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhcc-----chhhcCchHHHHHHHHHHHHHccCCCCCCc
Confidence 799999998754 3322 223556678999999999886654 445799999999999999975 445
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||||+||...+..++++.++++++|..|+++.||.+- ...+||||++|++||++..|+|++++.
T Consensus 162 ~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 162 WLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 899999999999999999999999999999999999999875 778999999999999999999998753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=381.01 Aligned_cols=212 Identities=23% Similarity=0.328 Sum_probs=179.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDI 161 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~ 161 (679)
+|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+|+ ..+|+|.++|.+... ..++.++||+|++.
T Consensus 14 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 92 (506)
T PRK13549 14 TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELA 92 (506)
T ss_pred EeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccc
Confidence 344567999999999999999999999999999999999998751 258999999976532 12467999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||+||+.+....+.....+.++..++++++++.+|+.+..++.+ ++|||||||||+||+||+.+|++|||
T Consensus 93 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllL 167 (506)
T PRK13549 93 LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLIL 167 (506)
T ss_pred cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999988643221111233445567889999999987666544 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 168 DEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999888999999999965 57889999999999999999987764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=341.94 Aligned_cols=199 Identities=28% Similarity=0.446 Sum_probs=170.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.+|+.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 89999999999999999999999999999999876 47999999976432 22467999999999999999999998
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
+...... .. .+...++++++++.+||++..++. ++.||||||||++||++|+.+|+++||||||+|||+.++
T Consensus 94 ~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~ 165 (232)
T PRK10771 94 LGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (232)
T ss_pred ccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 7532110 11 223456688999999998766654 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 254 YRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 254 ~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+.+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|++++..
T Consensus 166 ~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 166 QEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999764 899999999975 578899999999999999999887653
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=340.08 Aligned_cols=210 Identities=30% Similarity=0.494 Sum_probs=178.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++ +|+|+|++|++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++
T Consensus 5 ~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v~i~g~~~~~~~~~~~~i~~~~q~~ 80 (235)
T cd03299 5 NLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP---DSGKILLNGKDITNLPPEKRDISYVPQNY 80 (235)
T ss_pred eEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEcCcCChhHcCEEEEeecC
Confidence 344455444 89999999999999999999999999999999999886 47999999976532 2356899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++. ++.||||||||++||+||+.+|++++
T Consensus 81 ~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lll 152 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIARALVVNPKILL 152 (235)
T ss_pred ccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999998764322 123444556678899999998766654 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 153 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999765 999999999975 57889999999999999999987765
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=352.43 Aligned_cols=202 Identities=25% Similarity=0.397 Sum_probs=170.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---------ccccCcEEEEecCCC-
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---------KHISKRTGFVTQDDI- 161 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---------~~~~~~i~yv~Q~~~- 161 (679)
.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+.. ...++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 599999999999999999999999999999999999876 4789999986532 134567999999973
Q ss_pred -CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 162 -LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 162 -l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+++ .||+||+.+..... ....++..++++++++.++|. +..++ .++.||||||||++|||||+.+|++|
T Consensus 102 ~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lL 172 (289)
T PRK13645 102 QLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFELSGGQKRRVALAGIIAMDGNTL 172 (289)
T ss_pred hhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 444 69999998864321 123444556788899999994 44444 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++..
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 173 VLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999764 899999999975 578999999999999999999987764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=346.72 Aligned_cols=214 Identities=24% Similarity=0.333 Sum_probs=176.8
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~ 157 (679)
++|+++++|+|+|+++++||+++|+|||||||||||++|+|+++|. ...+|+|.++|.+... ..++.++|++
T Consensus 28 ~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 107 (267)
T PRK14237 28 VYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVF 107 (267)
T ss_pred EEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEe
Confidence 3344567999999999999999999999999999999999998642 1358999999976531 2366799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++ .||+||+.+..... ....+.+..++++++++.++|.+..+... ++.++.||||||||++|||+|+.+|+
T Consensus 108 q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~ 183 (267)
T PRK14237 108 QRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPD 183 (267)
T ss_pred cCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9998887 59999998864321 11234445567888999999864322222 34567899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 184 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 184 ILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999964 799999999975 57899999999999999999998875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=344.22 Aligned_cols=213 Identities=24% Similarity=0.349 Sum_probs=174.9
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|. ...+|+|.++|.+... ..++.++|++|
T Consensus 13 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q 92 (251)
T PRK14270 13 WYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ 92 (251)
T ss_pred EECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEec
Confidence 344467999999999999999999999999999999999987641 1257999999976531 23567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ +|++||+.+...... .....+..++++++++.+++.+.... .-+..++.||||||||++||++|+.+|++
T Consensus 93 ~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 168 (251)
T PRK14270 93 KPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKD-DLKKSALKLSGGQQQRLCIARTIAVKPDV 168 (251)
T ss_pred CCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhh-HhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 998887 899999988653321 11233445667889999988531111 11345668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 169 lllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 169 ILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999976 689999999975 57889999999999999999998876
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=347.74 Aligned_cols=204 Identities=23% Similarity=0.393 Sum_probs=173.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC--CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI--LYP 164 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~--l~~ 164 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|+++| .+|+|.++|.+... ..++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 5699999999999999999999999999999999999986 47999999976532 22457999999974 678
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
.+||.|++.+....+. .....+..+.++++++.+||. +..+. .+..|||||||||+||++|+.+|++|||||
T Consensus 103 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (267)
T PRK15112 103 RQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQKQRLGLARALILRPKVIIADE 175 (267)
T ss_pred chhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 8899999987654321 123444556788999999994 44443 345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+|||+.++..+.+.|++++++ |.|||++||++. ++..+||++++|++|++++.|++++.
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999875 899999999975 57889999999999999999987765
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=338.86 Aligned_cols=194 Identities=33% Similarity=0.476 Sum_probs=166.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c---c-cCcEEEEecCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H---I-SKRTGFVTQDDILY 163 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~---~-~~~i~yv~Q~~~l~ 163 (679)
.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+... . . ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 599999999999999999999999999999999999876 47999999976432 1 1 25799999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||.||+.+....+ .....+..++++++++.++|.+..++. +..||||||||++||++|+.+|++|||||
T Consensus 101 ~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 101 PTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred CCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999998764332 123344566788999999998765544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
||+|||+.+++.+.+.|++++++ |.|||++||++. .+ +.+|++++|++|++++
T Consensus 173 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 173 PTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999764 899999999975 45 5699999999999875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=343.80 Aligned_cols=199 Identities=29% Similarity=0.453 Sum_probs=170.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~ 165 (679)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ...++.++|++|++.+++
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~- 90 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE- 90 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-
Confidence 45699999999999999999999999999999999999876 4799999997642 234567999999998887
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.||+||+.+....+ . ...++++++++.+||. +..+ +.+..||||||||++||+||+.+|++||||||
T Consensus 91 ~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~-----~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 91 GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYAT-----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 69999998643221 1 1234577899999996 3444 34567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|+++..|++.++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999874 999999999965 57889999999999999999988775
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=343.47 Aligned_cols=215 Identities=24% Similarity=0.363 Sum_probs=174.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+.. .+|+|.++|.+... ..++.++|++|
T Consensus 13 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 92 (252)
T PRK14272 13 YYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQ 92 (252)
T ss_pred EECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEec
Confidence 34446799999999999999999999999999999999999875321 47999999976421 33567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++.+|+.||+.+..... ....+++..+.++++++.+++.+.... ..+..++.||||||||++||++|+.+|++
T Consensus 93 ~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l 169 (252)
T PRK14272 93 KPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKD-RLKTPATGLSGGQQQRLCIARALAVEPEI 169 (252)
T ss_pred cCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhh-hhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999998754321 111233445567777787776421111 11344567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 170 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 170 LLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999965 799999999975 578899999999999999999987763
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=343.09 Aligned_cols=214 Identities=25% Similarity=0.378 Sum_probs=175.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+||++++||+++|+|||||||||||++|+|+.++. ...+|+|.++|.+... ..++.++|++|
T Consensus 12 ~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14262 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQ 91 (250)
T ss_pred EeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEec
Confidence 334467999999999999999999999999999999999998631 1258999999976431 24567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ .||+||+.+...... .......++.+++.++.+|+.+..+. ..++.+++||||||||++||+||+.+|++
T Consensus 92 ~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~la~al~~~p~l 167 (250)
T PRK14262 92 KPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKS-ELNKPGTRLSGGQQQRLCIARALAVEPEV 167 (250)
T ss_pred CCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHH-HHhCChhhcCHHHHHHHHHHHHHhCCCCE
Confidence 998887 899999987643221 11233445567888999998642111 12345678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++..|+++++.
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 168 ILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999975 789999999975 478899999999999999999987764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=348.83 Aligned_cols=215 Identities=27% Similarity=0.399 Sum_probs=176.1
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC-----eeeEEEECCCCccc----cccCcEEE
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG-----LTGTILTNNNKPTK----HISKRTGF 155 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~-----~~G~i~~~g~~~~~----~~~~~i~y 155 (679)
+++|+++.+|+|+|++|++||+++|+||||||||||||+|+|+++|+.+ .+|+|.++|.+... ..++.++|
T Consensus 8 ~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 87 (272)
T PRK13547 8 HVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAV 87 (272)
T ss_pred EEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEE
Confidence 3344456799999999999999999999999999999999999876411 27999999976432 33556899
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML- 233 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~- 233 (679)
++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++ .+..|||||||||+||++|+
T Consensus 88 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 88 LPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred ecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCCHHHHHHHHHHHHHhc
Confidence 99998766679999999875321100 011112344568889999999875554 45579999999999999999
Q ss_pred --------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 234 --------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 234 --------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPAD 241 (272)
T ss_pred cccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 599999999999999999999999999999876 899999999975 5778999999999999999998876
Q ss_pred H
Q 005754 305 A 305 (679)
Q Consensus 305 ~ 305 (679)
+
T Consensus 242 ~ 242 (272)
T PRK13547 242 V 242 (272)
T ss_pred H
Confidence 5
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=341.86 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=174.1
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC--CCCeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ--GHGLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~--~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++++|+|+|++|++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+... ..++.++|++|
T Consensus 12 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14240 12 FYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQ 91 (250)
T ss_pred EECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEec
Confidence 34445799999999999999999999999999999999998753 11258999999976531 34567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++ +|+.||+.+....+. ..+.++.+++++++++.+++.+..... -++.+..||||||||++|||+|+.+|++
T Consensus 92 ~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~l 167 (250)
T PRK14240 92 QPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDR-LKKSALGLSGGQQQRLCIARALAVEPEV 167 (250)
T ss_pred CCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHH-HhcCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 998887 899999998643321 112344556788889998875321111 1234668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|+++..|++++.
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 168 LLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999964 799999999964 58889999999999999999988775
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=339.74 Aligned_cols=200 Identities=31% Similarity=0.481 Sum_probs=169.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... .....+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~-~~~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVILEGKQITE-PGPDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCC-CChhheEEecCcccCCCCCHHHHHH
Confidence 5799999999999999999999999999999999876 47999999976532 1223589999999999999999998
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
+......+ ...+.+..++++++++.+||.+..++. +++||||||||++||++|+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 233445556788999999998765554 457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 254 YRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 254 ~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+..+
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 9999999999765 899999999975 5788999999999999998886544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=334.22 Aligned_cols=197 Identities=27% Similarity=0.444 Sum_probs=168.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+++++||+++|+||||||||||+|+|+|..+|+ +|+|.++|.+... ..++.++|++|++.+++.+|+.|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999998863 7999999976432 34567999999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+...... . ...+.+++++++++.+||.+..++. ++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 90 n~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 161 (213)
T TIGR01277 90 NIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP 161 (213)
T ss_pred HHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 9987532211 1 1222345678899999998765544 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 251 TAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
.++..+.+.|+++.++ |.|||++||++. ++.+++|++++|++|+++..|.
T Consensus 162 ~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 162 LLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999764 899999999965 5778999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=341.33 Aligned_cols=216 Identities=22% Similarity=0.321 Sum_probs=175.9
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc-----ccccCcEEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT-----KHISKRTGFV 156 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~-----~~~~~~i~yv 156 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.+.. ...++.++|+
T Consensus 9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 88 (249)
T PRK14253 9 LDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMV 88 (249)
T ss_pred cEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEE
Confidence 3444555679999999999999999999999999999999999987531 25799999997542 1345679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|++.+++ .||.||+.+..... ....+...++++++.++.+++.+..... -+..+.+|||||||||+|||+|+.+|
T Consensus 89 ~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p 164 (249)
T PRK14253 89 FQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDR-LKSHAFGLSGGQQQRLCIARTIAMEP 164 (249)
T ss_pred ecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHH-hhcCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999887 89999998764321 1112334456677888888875422111 13446689999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+++||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 165 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 165 DVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999976 589999999975 58889999999999999999987764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=377.56 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=179.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQD 159 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~ 159 (679)
+++|+++++|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+... ..++.++|++|+
T Consensus 11 ~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 87 (501)
T PRK10762 11 DKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQE 87 (501)
T ss_pred EEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcc
Confidence 33444567999999999999999999999999999999999998864 7999999976421 124579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DILYPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+++.+||+||+.++...+.. ...+..+.+++++++++.+||.+..+..+ +.|||||||||+||+||+.+|++
T Consensus 88 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 162 (501)
T PRK10762 88 LNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMVEIAKVLSFESKV 162 (501)
T ss_pred hhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999886432110 11233445567889999999988666544 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999888999999999975 58899999999999999999987654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=345.33 Aligned_cols=215 Identities=20% Similarity=0.323 Sum_probs=172.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCcEEEE
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKRTGFV 156 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~i~yv 156 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +....+|+|.++|.+... ..++.++|+
T Consensus 28 ~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 107 (268)
T PRK14248 28 SIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMV 107 (268)
T ss_pred EEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEE
Confidence 333445679999999999999999999999999999999999754 212358999999976431 245679999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|++.+++. |+.||+.+..... ........++.+++.++.+++.+.... ..++.++.||||||||++|||+|+.+|
T Consensus 108 ~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrl~laral~~~p 183 (268)
T PRK14248 108 FQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKD-RLHSSALSLSGGQQQRLCIARTLAMKP 183 (268)
T ss_pred ecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHH-HHhcCcccCCHHHHHHHHHHHHHhCCC
Confidence 999988885 9999998764321 111222334567788888888531111 113456689999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++|||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|++++.|++++.
T Consensus 184 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 184 AVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred CEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999965 689999999965 57889999999999999999988765
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=332.03 Aligned_cols=196 Identities=31% Similarity=0.469 Sum_probs=167.2
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---c-----cccCcEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---K-----HISKRTG 154 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~-----~~~~~i~ 154 (679)
++++.|+++++|+|+||++++||+++|+||||||||||+++|+|+++| .+|+|.++|.+.. . ..++.++
T Consensus 3 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 3 NISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred ceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEccccchhhHHHHHHhCee
Confidence 445666667899999999999999999999999999999999999876 4799999997632 1 2356899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++|++.+++.+|++||+.+..... ...+.+..++++++++.+||++..++. ++.||||||||++||+||+.
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAILK 151 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999865422 123445566788999999998766554 45799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ..+.||++++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999877999999999975 34789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=341.12 Aligned_cols=213 Identities=25% Similarity=0.356 Sum_probs=174.1
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc------cccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK------HISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~------~~~~~i~yv~Q 158 (679)
+|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+|+. ..+|+|.++|.+... ..++.++|++|
T Consensus 13 ~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q 92 (251)
T PRK14249 13 FYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQ 92 (251)
T ss_pred EECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEec
Confidence 3444679999999999999999999999999999999999988642 136999999876421 34678999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++. |++||+.+....+. ...+++..+.++++++.+++.+.... ..++.+..||||||||++|||+|+.+|++
T Consensus 93 ~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~~p~l 168 (251)
T PRK14249 93 QPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKD-NLHKSGLALSGGQQQRLCIARVLAIEPEV 168 (251)
T ss_pred CCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhh-HhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998875 99999988654321 11122334567778888887532111 12345678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+||||||+|||+.++..+.+.|+++. +++|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 169 llLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 169 ILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 99999999999999999999999995 5899999999965 57889999999999999999988775
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=377.59 Aligned_cols=214 Identities=27% Similarity=0.379 Sum_probs=179.8
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~ 157 (679)
+++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|.+... ..++.++||+
T Consensus 10 ~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~i~~v~ 86 (510)
T PRK09700 10 GIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---TKGTITINNINYNKLDHKLAAQLGIGIIY 86 (510)
T ss_pred eeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC---CccEEEECCEECCCCCHHHHHHCCeEEEe
Confidence 333445556799999999999999999999999999999999999876 37999999976432 1235799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhc--C-C-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 158 QDDILYPHLTVRETLVFCSLLR--L-P-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
|++.+++.+||+||+.+..... . . ...+..+..++++++++.+||.+..++.+ ++|||||||||+||++|+
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 87 QELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHKQMLEIAKTLM 161 (510)
T ss_pred ecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHh
Confidence 9999999999999998753211 0 0 00123445567889999999987666554 479999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999888999999999965 57889999999999999999988764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=341.33 Aligned_cols=207 Identities=26% Similarity=0.371 Sum_probs=171.8
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC-----ccc----c----ccCcEE
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-----PTK----H----ISKRTG 154 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~-----~~~----~----~~~~i~ 154 (679)
|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+ ... . .++.++
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~ 92 (258)
T PRK11701 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP---DAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWG 92 (258)
T ss_pred cCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCccccccccccCCHHHHHHHhhcceE
Confidence 3345699999999999999999999999999999999999886 47899999976 321 1 245699
Q ss_pred EEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHH
Q 005754 155 FVTQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 155 yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
|++|++ .+++.+|+.||+.+..... . .....+.++++.++++.+++.+ ..++ .+..||||||||++||||
T Consensus 93 ~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 93 FVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDD-----LPTTFSGGMQQRLQIARN 165 (258)
T ss_pred EEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhC-----CCccCCHHHHHHHHHHHH
Confidence 999997 4677889999997643211 1 1122344566788999999963 3443 456799999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+++|++++|++|++++.|+++++
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999765 899999999965 57789999999999999999988765
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=343.30 Aligned_cols=212 Identities=24% Similarity=0.367 Sum_probs=174.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCCCcc------ccccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPT------KHISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~~g~~~~------~~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+++.. .+|+|.++|.+.. ...++.++|++|+
T Consensus 17 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 96 (259)
T PRK14260 17 YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQR 96 (259)
T ss_pred ECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecc
Confidence 3345699999999999999999999999999999999999875322 4899999997642 1345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++ +||+||+.+....+. ..++.+..++++++++.+|+.+.... ..+..+..||||||||++|||||+.+|+++
T Consensus 97 ~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 172 (259)
T PRK14260 97 PNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGGQQQRLCIARALAIKPKVL 172 (259)
T ss_pred cccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 98887 899999987644321 12334445667888999988431111 123456789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe-----CCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS-----EGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~-----~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++++.|++++.
T Consensus 173 lLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 173 LMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 99999999999999999999999975 699999999975 5889999999998 5999999999886
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=340.53 Aligned_cols=210 Identities=24% Similarity=0.352 Sum_probs=171.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
.+++|+|+|++|++||+++|+||||||||||+|+|+|+++ |....+|+|.++|.+.. ...++.++|++|++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 4569999999999999999999999999999999999986 21125899999997642 124567999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++ .||+||+.+..... .....+...+.++++++.+++...... ..+..+.+||||||||++|||||+.+|+++||
T Consensus 96 ~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~laral~~~p~llll 171 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKD-NLDRNAQAFSGGQQQRICIARALAVRPKVVLL 171 (251)
T ss_pred cCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHH-HhccChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 886 79999998754322 111223344567888999998531100 11344668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+++..|++++.
T Consensus 172 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 172 DEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999964 699999999975 57889999999999999999988775
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=345.05 Aligned_cols=213 Identities=22% Similarity=0.360 Sum_probs=172.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEec
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQ 158 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q 158 (679)
+|+++.+|+|+||+|++||+++|+|||||||||||++|+|++++.. ..+|+|.++|.+.. ...++.++|++|
T Consensus 22 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q 101 (269)
T PRK14259 22 SYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQ 101 (269)
T ss_pred EECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEcc
Confidence 3444679999999999999999999999999999999999876311 25899999997542 134567999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++. ||+||+.+....+ .... +.+++++++++.+++...... .-+..++.||||||||++|||||+.+|++
T Consensus 102 ~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~l 175 (269)
T PRK14259 102 QPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKD-KLNESGYSLSGGQQQRLCIARTIAIEPEV 175 (269)
T ss_pred CCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhh-hhCCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9988884 9999998865432 1122 234567778888887431111 12345668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-----------CeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-----------GRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-----------G~iv~~G~~~~~~~ 307 (679)
|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++ |++++.|+++++.+
T Consensus 176 llLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 176 ILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 999999999999999999999999964 799999999965 58899999999996 67899999988743
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=335.75 Aligned_cols=208 Identities=27% Similarity=0.375 Sum_probs=171.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc-cc-cCcEEEEecCCC--CCCCCC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK-HI-SKRTGFVTQDDI--LYPHLT 167 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~-~~-~~~i~yv~Q~~~--l~~~lT 167 (679)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. ...+|+|.++|.+... .. ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 579999999999999999999999999999999998751 0147999999976533 22 357999999984 567789
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
++|++.+...... ....+..++++++++.+++.+.. ...+..++.|||||||||+|||+|+.+|++|||||||+|
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~ 155 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTD 155 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999977543211 12234456788999999997320 012334567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 248 LDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+.++..+.+.|++++++ |+|||++||++. ++..++|++++|++|+++..|++++..
T Consensus 156 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 156 LDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999874 899999999975 578899999999999999999887753
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=345.09 Aligned_cols=214 Identities=22% Similarity=0.386 Sum_probs=178.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC-CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI-LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~-l~~~ 165 (679)
+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 3589999999999999999999999999999999999986 47999999976532 34678999999974 5777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
.||.||+.+..... ....++..++++++++.+||.+..++. +..||||||||++|||+|+.+|++|||||||
T Consensus 97 ~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~lAraL~~~p~llllDEPt 168 (277)
T PRK13642 97 ATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVAVAGIIALRPEIIILDEST 168 (277)
T ss_pred CCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998754321 123445556788999999998765543 5579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH---HHHHcCCCCC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS---YFESVGFSPS 317 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 317 (679)
+|||+.++..+.+.|++++++ |.|||++||++.. +. .+|++++|++|+++..|++++... .+...+...|
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (277)
T PRK13642 169 SMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVP 242 (277)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCCHHHHhcCHHHHHHCCCCCC
Confidence 999999999999999999875 9999999999764 54 699999999999999999887643 2334455444
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=339.40 Aligned_cols=215 Identities=24% Similarity=0.336 Sum_probs=172.8
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccccCcEEEE
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHISKRTGFV 156 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~~~~i~yv 156 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|.+.. ...++.++|+
T Consensus 12 ~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 91 (252)
T PRK14255 12 HLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMV 91 (252)
T ss_pred EEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEE
Confidence 333445679999999999999999999999999999999999864 32224899999997642 1345689999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|++.+++ .||.||+.+....+. ........+.+.+.++.+++...... .-+..++.||||||||++|||+|+.+|
T Consensus 92 ~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~~-~~~~~~~~LS~Gq~qrv~laral~~~p 167 (252)
T PRK14255 92 FQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVKD-HLHESALSLSGGQQQRVCIARVLAVKP 167 (252)
T ss_pred ECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchhh-HHhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 99998888 699999987643321 11222234456777888877421111 113456689999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+++||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++|++++|++|+++..|++.+.
T Consensus 168 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 168 DVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999976 589999999975 57889999999999999999988775
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=339.67 Aligned_cols=212 Identities=24% Similarity=0.359 Sum_probs=173.2
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+..+. ...+|+|.++|.+... ..++.++|++|+
T Consensus 16 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 95 (253)
T PRK14261 16 YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQR 95 (253)
T ss_pred ECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecC
Confidence 33467999999999999999999999999999999999987531 1247999999976421 335679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++. ||+||+.+....+. .....+.++.++++++.+++.+...+. .+..++.||||||||++|||+|+.+|+++
T Consensus 96 ~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14261 96 PNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGGQQQRLCIARTLAVNPEVI 171 (253)
T ss_pred CccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 988885 99999998654321 112334456678888988885321111 13456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.+++|++++|++|+++..|++++.
T Consensus 172 lLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 172 LMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 99999999999999999999999976 689999999965 57789999999999999999998775
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=374.03 Aligned_cols=218 Identities=30% Similarity=0.539 Sum_probs=188.3
Q ss_pred EEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 005754 45 TLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 45 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L 124 (679)
.++|+|++|+.+.+. +.+||+|+||+|+|||.+||+||||+||||+.++|
T Consensus 465 ~IeF~~VsFaYP~Rp------------------------------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL 514 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRP------------------------------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLL 514 (716)
T ss_pred eEEEEEeeeecCCCC------------------------------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHH
Confidence 499999999987542 36799999999999999999999999999999999
Q ss_pred hcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHH-----HH
Q 005754 125 AGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA-----EA 195 (679)
Q Consensus 125 ~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~ 195 (679)
-.++.|+ +|+|.+||.++.+ .+|++||+|.|+|.||.. ||+|||.|+.. ..+.++.++.+ .+
T Consensus 515 ~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~ 585 (716)
T KOG0058|consen 515 LRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHE 585 (716)
T ss_pred HHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHH
Confidence 9999874 7999999998643 568899999999999986 99999999754 23444443322 22
Q ss_pred HHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 005754 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275 (679)
Q Consensus 196 ~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH 275 (679)
.+ .++++..||.+|+ +...||||||||++|||||++||+||||||.||+||.++...+.+.|.++.+ ++|||++.|
T Consensus 586 FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAH 661 (716)
T KOG0058|consen 586 FI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAH 661 (716)
T ss_pred HH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEeh
Confidence 23 3678889999996 4567999999999999999999999999999999999999999999999876 599999999
Q ss_pred CccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 276 QPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 276 ~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
..+ ..+.+|+|+++++|++++.|+.+|.++
T Consensus 662 RLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 662 RLS--TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred hhh--HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 976 467899999999999999999888754
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=341.35 Aligned_cols=212 Identities=24% Similarity=0.368 Sum_probs=175.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ ...|+|.++|++.. ...++.++|++|++.
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 3569999999999999999999999999999999999988641 14789999997642 134567999999988
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++ +|+.||+.+..... ...+..+..+++.++++.+++.+..+. ..++.+..||||||||++|||+|+.+|+++||
T Consensus 99 l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LSgGq~qrv~laral~~~p~vllL 174 (261)
T PRK14258 99 LFP-MSVYDNVAYGVKIV--GWRPKLEIDDIVESALKDADLWDEIKH-KIHKSALDLSGGQQQRLCIARALAVKPKVLLM 174 (261)
T ss_pred cCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888 89999998764321 111233445678889999998542211 12345668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC-----CeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE-----GRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~-----G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.++||++++|++ |++++.|+++++.
T Consensus 175 DEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 175 DEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 999999999999999999999975 5899999999975 58899999999999 9999999998863
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=343.39 Aligned_cols=213 Identities=23% Similarity=0.398 Sum_probs=176.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc-----cccCcEEEEecCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK-----HISKRTGFVTQDD 160 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~ 160 (679)
|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.+... ..++.++|++|++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence 334679999999999999999999999999999999999987521 258999999976421 3467899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++ .|++||+.+..... ...+..+.++++.++++.+++.+..++.. ++.++.||||||||++|||+|+.+|+++|
T Consensus 111 ~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lll 186 (276)
T PRK14271 111 NPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLL 186 (276)
T ss_pred ccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888 79999998764321 11234445556788899999975332222 24466899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.+++|++++|++|+++..|+++++.
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 187 LDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999976 589999999965 578899999999999999999988763
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=343.07 Aligned_cols=210 Identities=24% Similarity=0.356 Sum_probs=173.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc------cccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK------HISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~------~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+||++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+... ..++.++|++|++.
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 3569999999999999999999999999999999999976311 258999999976431 34678999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++. |++||+.+..... ....+...++.++++++.+++.+...+. .+..+..||||||||++|||+|+.+|+++||
T Consensus 117 l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllL 192 (272)
T PRK14236 117 PFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDR-LHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192 (272)
T ss_pred cCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHH-hhCCcccCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 8886 9999998764322 1112333445678889999886421111 1344668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|+++..|++++.
T Consensus 193 DEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 193 DEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHH
Confidence 999999999999999999999976 789999999965 57889999999999999999988765
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=315.88 Aligned_cols=216 Identities=26% Similarity=0.439 Sum_probs=190.1
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------------
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------------ 146 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------------ 146 (679)
...+++.|+||...+|++||+..++|+++.|+|.|||||||+|+||.-+.+|. .|.|.+||+.+.
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeC
Confidence 34567789999999999999999999999999999999999999999988863 788888886421
Q ss_pred -----ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHH
Q 005754 147 -----KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGG 221 (679)
Q Consensus 147 -----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 221 (679)
+.+|.+.|+|||...+++.+||.||+.-+-.-- ...++.+..++++..|+++|+.+.+| .++..||||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~-----~YP~~LSGG 156 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKAD-----AYPAHLSGG 156 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhh-----cCccccCch
Confidence 123457999999999999999999986532211 13567888899999999999998765 456789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 222 ERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 222 erqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||... ...+...+|++|.+|.+-+.|+
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~ 235 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGP 235 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeecceecccCC
Confidence 999999999999999999999999999999999999999999999999999999965 5788999999999999999999
Q ss_pred hhhH
Q 005754 302 GSEA 305 (679)
Q Consensus 302 ~~~~ 305 (679)
|+++
T Consensus 236 P~qv 239 (256)
T COG4598 236 PEQV 239 (256)
T ss_pred hHHH
Confidence 9987
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=345.38 Aligned_cols=219 Identities=22% Similarity=0.324 Sum_probs=175.6
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCc
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKR 152 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~ 152 (679)
.++++++|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ |....+|+|.++|.+... ..++.
T Consensus 42 ~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~ 121 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121 (286)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhc
Confidence 3444445555679999999999999999999999999999999999854 211258999999976421 24568
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+.+.... ..+..++.||||||||++|||||
T Consensus 122 i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 122 IGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSD-RLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred EEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhh-HhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999988875 99999998653321 11223345667788888887421100 11344668999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999975 689999999975 57889999999999999999998775
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=359.16 Aligned_cols=212 Identities=31% Similarity=0.434 Sum_probs=185.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc--------cccCcEEEEecCC-
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK--------HISKRTGFVTQDD- 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~- 160 (679)
..+++||||++++||++||+|.|||||||+.++|.|+++++ ...+|+|.++|.+... ...+.|+||||++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999865 2368999999985421 1236799999996
Q ss_pred -CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 -ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 -~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+-|-+||.+.+.-....+. ..+.++.++++.++|+.+||.+.... ++++++|||||||||.||+||+.+|++|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LL 176 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLL 176 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEE
Confidence 46777899998876555442 23477888999999999999986554 6799999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
|+||||++||+.++.+|+++|+++.+ .|.++|++|||+. -+.++||||++|.+|++++.|+++++++-
T Consensus 177 IaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~ 245 (539)
T COG1123 177 IADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILSN 245 (539)
T ss_pred EECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence 99999999999999999999999985 5999999999976 58999999999999999999999998764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=338.45 Aligned_cols=223 Identities=28% Similarity=0.404 Sum_probs=181.9
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC---eeeEEEECCCCcc----ccccC
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPT----KHISK 151 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~---~~G~i~~~g~~~~----~~~~~ 151 (679)
...+++++.++++.+|+|+||++++||+++|+||||||||||+++|+|+.+|+.| ..|++.++|.+.. ...++
T Consensus 11 i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~ 90 (257)
T PRK14246 11 FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRK 90 (257)
T ss_pred eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhc
Confidence 3445556667778899999999999999999999999999999999999887543 3477777666532 13467
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
.++|++|++.+++.+||+||+.+..... ....+.+..++++++++.+++.+..... -+..++.||||||||++|||+
T Consensus 91 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 91 EVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVYDR-LNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred ceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccchhh-hcCCcccCCHHHHHHHHHHHH
Confidence 8999999999999999999998864321 1122345556788999999996421111 123466899999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++++|++|+++..|++++..
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999965 699999999965 577899999999999999999987753
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=340.06 Aligned_cols=215 Identities=20% Similarity=0.263 Sum_probs=177.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc------cccCcEEE
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK------HISKRTGF 155 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~------~~~~~i~y 155 (679)
.+++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|.. ..+|+|.++|.+... ..++.++|
T Consensus 14 ~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 93 (261)
T PRK14263 14 DKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGM 93 (261)
T ss_pred EEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEE
Confidence 3445566789999999999999999999999999999999999987522 258999999976421 34567999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
++|++.++ .+|+.||+.+....+. . ..+..++++++++.++|.+..+... +..++.||||||||++|||||+.+
T Consensus 94 v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~ 167 (261)
T PRK14263 94 VFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATE 167 (261)
T ss_pred EecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999887 5999999988654321 1 2234467888999999865332222 245678999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe--------CCeEEEecChhhHH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS--------EGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~--------~G~iv~~G~~~~~~ 306 (679)
|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++++.|+++++.
T Consensus 168 p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 168 PEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 999999999999999999999999999964 799999999975 5789999999996 89999999987753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=370.43 Aligned_cols=214 Identities=21% Similarity=0.302 Sum_probs=181.4
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~ 157 (679)
+++++|+++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.++|++
T Consensus 3 nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 3 NISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK---DSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred ceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 455667777899999999999999999999999999999999999876 37999999976421 2356799999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++.+||+||+.+..........+..+..++++++++.+|+.+..++. +..|||||||||+||++|+.+|+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA~al~~~p~ 154 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIAKAFSYNAK 154 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHHHHHHhCCC
Confidence 9998999999999998753211011113344456788999999998766554 45799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|++++.
T Consensus 155 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 155 IVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999888999999999965 57889999999999999999987654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=373.18 Aligned_cols=202 Identities=27% Similarity=0.433 Sum_probs=175.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEecCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQDDIL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q~~~l 162 (679)
|+++.+|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... . .++.++|++|++.+
T Consensus 21 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (510)
T PRK15439 21 YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP---DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL 97 (510)
T ss_pred eCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCCCCHHHHHhCCEEEEeccCcc
Confidence 3346799999999999999999999999999999999999876 37999999976432 1 23469999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+... ...+.+++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++||||
T Consensus 98 ~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~aL~~~p~lllLD 165 (510)
T PRK15439 98 FPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVEILRGLMRDSRILILD 165 (510)
T ss_pred CCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999987531 11234567889999999987666544 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 999999999999999999999888999999999965 57889999999999999999988765
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=383.95 Aligned_cols=203 Identities=30% Similarity=0.523 Sum_probs=173.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
..+|+|+|++|++||.+||+|+||||||||+|+|+|+++| .+|+|.+||.+... .+|+++|||+||+.+|..
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p---~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g- 561 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP---QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG- 561 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-
Confidence 3699999999999999999999999999999999999987 48999999988643 578999999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSI-----AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|++||+.++. | ..+.++..+. +.+.+. .+....+|.+|+ ...+||||||||++|||||+++|+||+|
T Consensus 562 SI~eNi~l~~----p-~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 562 SIRENIALGN----P-EATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 9999998753 2 2233333222 222222 456677899985 5678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
|||||+||+.+++.|.+.|.++.+ |+|+|+++|+++ ..+.||||++|++|+++.+|+.+|.++.
T Consensus 634 DEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 634 DEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred eCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999865 799999999975 5789999999999999999999998764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=341.72 Aligned_cols=222 Identities=23% Similarity=0.333 Sum_probs=178.3
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCcc------ccc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPT------KHI 149 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~------~~~ 149 (679)
....++++++|+++.+|+|+|++|++||+++|+|+|||||||||++|+|+.+ |....+|+|.++|.+.. ...
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence 3455667777777789999999999999999999999999999999999886 21235899999997642 134
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH
Q 005754 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA 229 (679)
Q Consensus 150 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 229 (679)
++.++|++|++.+++ .||+||+.+....+ ...+....++.+.+.++.+++.+..... -+..+..||||||||++||
T Consensus 104 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~-~~~~~~~LSgGe~qrv~la 179 (271)
T PRK14238 104 RTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDR-LHDNAYGLSGGQQQRLCIA 179 (271)
T ss_pred hhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHH-HhcCcccCCHHHHHHHHHH
Confidence 568999999998887 49999998864322 1112223345567777777553211111 1345668999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 230 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|++++.
T Consensus 180 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 180 RCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999976 799999999965 57889999999999999999988765
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=325.88 Aligned_cols=172 Identities=48% Similarity=0.829 Sum_probs=152.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|+..+ ...+|+|.++|++.....++.++|++|++.+++.+||+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceEEEECCEehHHHhhhceEEecccCccccCCcHHH
Confidence 5699999999999999999999999999999999998642 135899999998754445678999999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+.... + .||||||||++||+||+.+|++++|||||+|||+
T Consensus 99 ~l~~~~~~-------------------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 99 ALRFSALL-------------------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred HHHHHHHH-------------------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 99864210 0 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-CeEEEec
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCLYFG 300 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-G~iv~~G 300 (679)
.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 142 ~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 142 QAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999877999999999976446789999999999 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=336.60 Aligned_cols=211 Identities=27% Similarity=0.367 Sum_probs=171.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC-----ccc--------ccc
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK-----PTK--------HIS 150 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~-----~~~--------~~~ 150 (679)
++++|+++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+ ... ..+
T Consensus 9 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 85 (253)
T TIGR02323 9 LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP---DHGTATYIMRSGAELELYQLSEAERRRLMR 85 (253)
T ss_pred eEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEEecccccccccccCCHHHHHHhhh
Confidence 33444456789999999999999999999999999999999999876 47999999865 321 123
Q ss_pred CcEEEEecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHH
Q 005754 151 KRTGFVTQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 151 ~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
+.++|++|++. +.+.+|+.||+.+..... . .....+..+.++++++.+|+.+ ..++ .++.|||||||||+
T Consensus 86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----LPRAFSGGMQQRLQ 158 (253)
T ss_pred cceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----CchhcCHHHHHHHH
Confidence 56999999974 456679999987542211 1 0112234467889999999963 4443 45579999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||++. .+..++|++++|++|++++.|+++++
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999998764 899999999965 57789999999999999999988765
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=357.58 Aligned_cols=219 Identities=29% Similarity=0.455 Sum_probs=185.2
Q ss_pred CCCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHH
Q 005754 40 SCYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKST 119 (679)
Q Consensus 40 ~~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKST 119 (679)
.+.+++++.+|++|..+. ++++++|+|+++++|+.+||+|+|||||||
T Consensus 315 ~~~~~ei~~~~l~~~y~~--------------------------------g~~~l~~l~~t~~~g~~talvG~SGaGKST 362 (559)
T COG4988 315 NEPPIEISLENLSFRYPD--------------------------------GKPALSDLNLTIKAGQLTALVGASGAGKST 362 (559)
T ss_pred cCCCceeeecceEEecCC--------------------------------CCcccCCceeEecCCcEEEEECCCCCCHHH
Confidence 455677778888886531 237899999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHH
Q 005754 120 MLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA 195 (679)
Q Consensus 120 LL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~ 195 (679)
|+++|+|+.+| .+|+|.+||.+.. ..++++++||+|++.+|+. |++||+.++.. ..+++ .+.+
T Consensus 363 Ll~lL~G~~~~---~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~ 429 (559)
T COG4988 363 LLNLLLGFLAP---TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIA 429 (559)
T ss_pred HHHHHhCcCCC---CCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHH
Confidence 99999999986 4899999998753 2578999999999999986 99999987531 12333 3455
Q ss_pred HHHHcCCC------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 005754 196 VMAELGLT------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269 (679)
Q Consensus 196 ~l~~lgL~------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 269 (679)
+++..||. +..|+.+|+ ..++|||||+|||++||||+++++++++||||++||.++++.|++.|.+++++ +|
T Consensus 430 al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-kt 507 (559)
T COG4988 430 ALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KT 507 (559)
T ss_pred HHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-Ce
Confidence 56665554 356777875 57789999999999999999999999999999999999999999999999874 99
Q ss_pred EEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 270 ii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
++++||++. ...-+|+|++|++|+++..|.++++.+
T Consensus 508 vl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 508 VLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHhh
Confidence 999999975 467899999999999999999988743
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=338.71 Aligned_cols=200 Identities=28% Similarity=0.520 Sum_probs=161.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 56999999999999999999999999999999999998763 7899999976422 34567999999988775 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKT-----SIAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+... ........ ...+++++.+ ++.... +..++.|||||||||+|||+|+.+|+++
T Consensus 91 tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 91 SIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIV-----GEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred hHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchh-----hcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999976421 11111111 1123344444 333322 2346689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+++++.+
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999974 8999999999764 5 5699999999999999999877643
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=337.66 Aligned_cols=209 Identities=20% Similarity=0.308 Sum_probs=170.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.++.. ..+|+|.++|.+.. ...++.++|++|++.
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 4569999999999999999999999999999999999976321 24799999997642 134568999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++. ||.||+.+....+. .. ...++.+++.++.+++...... .-+..+..|||||||||+|||||+.+|++|||
T Consensus 112 l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qrv~LAraL~~~p~lllL 185 (274)
T PRK14265 112 PFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKD-KLKEKGTALSGGQQQRLCIARAIAMKPDVLLM 185 (274)
T ss_pred cccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHH-HhcCCcccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 8875 99999987643221 11 1223446677888887422111 11345668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe---------CCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS---------EGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~---------~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++++|+ +|++++.|+++++.
T Consensus 186 DEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 186 DEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999999999999999999999975 689999999975 5889999999998 79999999998863
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=337.40 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=169.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC-CeeeEEEECCCCccc-c-ccCcEEEEecCCC--CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH-GLTGTILTNNNKPTK-H-ISKRTGFVTQDDI--LYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~-~~~G~i~~~g~~~~~-~-~~~~i~yv~Q~~~--l~~~ 165 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|.. ..+|+|.++|.+... . .++.++||+|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 458999999999999999999999999999999999987621 157999999976532 2 2357999999974 4566
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+|+.+++.+.+.... ... ..++++++++.++|.+..+ .-+..++.|||||||||+|||||+.+|++|||||||
T Consensus 96 ~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~--~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt 168 (254)
T PRK10418 96 HTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAAR--VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168 (254)
T ss_pred ccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhh--hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 899999876432211 111 2356788999999976210 112345679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||+.++..+.+.|++++++ |.|||++||++. ++.+++|++++|++|++++.|++++.
T Consensus 169 ~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 169 TDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999764 899999999965 47789999999999999999998775
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=335.42 Aligned_cols=211 Identities=28% Similarity=0.378 Sum_probs=170.5
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc----cccC-cEEEEecC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK----HISK-RTGFVTQD 159 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~----~~~~-~i~yv~Q~ 159 (679)
+|+++.+|+|+|+++++||+++|+||||||||||+++|+|+. +| .+|+|.++|.+... ..++ .++|++|+
T Consensus 16 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~ 92 (252)
T CHL00131 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESILDLEPEERAHLGIFLAFQY 92 (252)
T ss_pred EeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcccCChhhhheeeEEEEecc
Confidence 344456999999999999999999999999999999999973 33 57999999876432 1222 48899999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 160 DILYPHLTVRETLVFCSLLRLP----RTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+.+++.+|+.|++.+....... ......+..++++++++.+|+. +..++.++ .+|||||||||+||+||+.
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~ 168 (252)
T CHL00131 93 PIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALL 168 (252)
T ss_pred ccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHc
Confidence 9999999999999875432110 0112223346678899999997 34443332 2599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|+++.+
T Consensus 169 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 169 DSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999877999999999965 35555 899999999999999988743
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=306.99 Aligned_cols=197 Identities=36% Similarity=0.501 Sum_probs=173.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cc-cCcEEEEecCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HI-SKRTGFVTQDD 160 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~-~~~i~yv~Q~~ 160 (679)
+...||++|++.|++||-++|+|||||||||||-+++|+..| .+|+|.+.|++..+ .+ .+.+|+|||..
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~---ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP---SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC---CCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 346799999999999999999999999999999999999886 47999999987532 22 36899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+.|+||..||+...+.++.. +..+..+.+.++|+.+||.+..+ .++.+|||||+|||+||||++..|+|||
T Consensus 98 ~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~-----HyP~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 98 HLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLT-----HYPAQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccc-----cCccccCchHHHHHHHHHHhcCCCCEEe
Confidence 999999999999988777532 33455667888999999987543 4677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 170 ADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 170 ADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999976 5999999999974 678899999999999874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=340.26 Aligned_cols=205 Identities=27% Similarity=0.370 Sum_probs=173.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 5799999999999999999999999999999999999876 47999999975421 2356899999997 4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++..|+.|++.+..... ......+..++++++++.+|+. +..++ .++.||||||||++|||+|+.+|++||
T Consensus 102 ~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~Ge~qrl~laral~~~p~lll 174 (268)
T PRK10419 102 VNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLSGGQLQRVCLARALAVEPKLLI 174 (268)
T ss_pred cCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCChHHHHHHHHHHHHhcCCCEEE
Confidence 667899999987643211 1123445556789999999996 44443 455799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++|++|++++.|++++..
T Consensus 175 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999865 899999999965 577899999999999999999987753
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=336.03 Aligned_cols=212 Identities=20% Similarity=0.335 Sum_probs=174.2
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.. |....+|+|.++|.+... ..++.++|++|+
T Consensus 13 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~ 92 (250)
T PRK14266 13 FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQK 92 (250)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecC
Confidence 334569999999999999999999999999999999999864 211258999999976431 345689999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++. |+.||+.+..... .....+..++++.++++.+|+.+...... +..+..||||||||++|||+|+.+|++|
T Consensus 93 ~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~ll 168 (250)
T PRK14266 93 PNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVI 168 (250)
T ss_pred CccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 988885 9999998754321 11223345567888999999854221111 3456689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.+|++++|++|++++.|++++.
T Consensus 169 llDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 169 LMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999965 899999999965 58899999999999999999998875
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=341.83 Aligned_cols=208 Identities=21% Similarity=0.342 Sum_probs=170.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~ 161 (679)
++.+|+|+||+|++||+++|+|||||||||||++|+|+.++.. ..+|+|.++|.+.. ...++.++|++|++.
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 3569999999999999999999999999999999999986311 25799999997642 134678999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++. ||.||+.+....+. .+. +..++++++++.+||.+..... -+..+..||||||||++|||+|+.+|++|||
T Consensus 131 l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LSgGe~qrv~LAraL~~~p~lLLL 204 (285)
T PRK14254 131 PFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQ-LDSSGLDLSGGQQQRLCIARAIAPDPEVILM 204 (285)
T ss_pred cCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHH-HhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8885 99999987654321 122 3445688899999985321111 1244668999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEE-EEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVL-VLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~-lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|++++++ .|||++||++. .+.+++||++ +|++|+++..|++++.
T Consensus 205 DEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 205 DEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 9999999999999999999999764 89999999965 5788999975 6799999999988765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=330.40 Aligned_cols=194 Identities=28% Similarity=0.496 Sum_probs=168.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
+.+|+|+||++++||+++|+||||||||||+++|+|.++| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 5699999999999999999999999999999999999876 47999999976531 2356899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|+.||+.+...... ....++.+++++++++.+||.+..++. ++.||||||||++|||+|+.+|++++|||
T Consensus 95 ~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv~laral~~~p~illlDE 167 (220)
T TIGR02982 95 GFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRVAIARALVHRPKLVLADE 167 (220)
T ss_pred CCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999998654321 123455566789999999998765544 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||+|||+.++..+.+.|+++++ .|+|||++||++. +.++||++++|++|++
T Consensus 168 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 168 PTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 9999999999999999999986 5899999999974 4689999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=368.84 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=178.5
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEec
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQ 158 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q 158 (679)
++++|+++++|+|+|+++++||+++|+||||||||||||+|+|+.+|+ ..+|+|.++|++... ..++.++||+|
T Consensus 7 l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 85 (500)
T TIGR02633 7 IVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQ 85 (500)
T ss_pred EEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEee
Confidence 334455567999999999999999999999999999999999998752 248999999976432 12457999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+||.||+.+........ ....++..++++++++.+||.+..+ ++.++.|||||||||+||+||+.+|+
T Consensus 86 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 86 ELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV----TRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred ccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc----cCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999998764322111 1233445567889999999976432 12345799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 99999999999999999999999999888999999999965 5888999999999999999987754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=334.54 Aligned_cols=199 Identities=30% Similarity=0.423 Sum_probs=171.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|.+... ..++.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 89999999999999999999999999999999998742 7999999976432 234569999999888888999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh-------CCCeEEE
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI-------NPSLLIL 241 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~-------~P~lllL 241 (679)
.||+.+.... .....+..++++++++.+||.+..++. ++.||||||||++||++|+. +|++|||
T Consensus 87 ~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llll 157 (248)
T PRK03695 87 FQYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLL 157 (248)
T ss_pred HHHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEE
Confidence 9999875321 122334456788999999998755544 45799999999999999998 6799999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+.+++
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 158 DEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999878999999999965 58899999999999999999987765
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=358.92 Aligned_cols=207 Identities=30% Similarity=0.440 Sum_probs=181.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc------cccccCcEEEEecCC--C
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP------TKHISKRTGFVTQDD--I 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~------~~~~~~~i~yv~Q~~--~ 161 (679)
...+++||||++++||++||+|+||||||||.|+|+|+.+| .+|+|.++|.+. ....++++-+||||+ .
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P---~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~S 379 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP---SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS 379 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEEeCcccccccchhhhhhhheEEEEeCcccc
Confidence 46799999999999999999999999999999999999987 378999998761 123456788889886 6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|.|.+||++++......... ...++.++++.++++.+||... +.++++++||||||||++|||||+.+|++|++
T Consensus 380 LnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 380 LNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred cCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEe
Confidence 89999999999876554322 2356677889999999999842 55788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||.||+..+.+++++|+++.++ |.|.|++|||.. -+..+||||++|++|++++.|+.+++.
T Consensus 454 DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999876 999999999965 689999999999999999999887763
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=337.03 Aligned_cols=199 Identities=30% Similarity=0.475 Sum_probs=162.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lT 167 (679)
.+|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DT 91 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-cc
Confidence 699999999999999999999999999999999999876 47899999975421 34567999999998886 69
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTS-----IAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
|+||+.+.... ....+..+ .+++.++.+ ++.+..+ ..+..||||||||++||++|+.+|++++
T Consensus 92 v~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 92 VAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred HHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999874321 11211111 234555555 5554333 3456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+|||+.++..+.+.|+++++ +.|||++||++. ++. .||++++|++|++++.|++++..+
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999964 899999999975 454 499999999999999998877644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=346.29 Aligned_cols=209 Identities=21% Similarity=0.322 Sum_probs=174.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCcc------ccccCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPT------KHISKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~l 162 (679)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.++. ...+|+|.++|.+.. ..+++.++||||++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999987532 124799999998753 1356789999999998
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC-HHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLS-TKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++ .|++||+.|+.... ... ++..++.++++++.++|.+..++.++ +.+..||||||||++|||||+.+|+||||
T Consensus 175 ~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred CC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 85 79999999864321 122 22234457788899888544334443 45778999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.++||||++|++|+++..|+++++.
T Consensus 250 DEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 250 DEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999876 699999999965 577889999999999999999999874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=377.69 Aligned_cols=199 Identities=27% Similarity=0.426 Sum_probs=169.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++++|||.+||+||||||||||+++|+|++ |+ +|+|.+||.+.. +.+++.++||+|++.+|+.
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 56999999999999999999999999999999999999 63 799999997753 2568899999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. + ..++++. +++++..+ |++..||.+|+. ...||||||||++|||||+++|+||
T Consensus 438 TI~eNI~~g~----~-~~~~eei----~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~Il 507 (588)
T PRK11174 438 TLRDNVLLGN----P-DASDEQL----QQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLL 507 (588)
T ss_pred CHHHHhhcCC----C-CCCHHHH----HHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998852 1 2334333 33333333 345678889864 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|+++..|+.++..+
T Consensus 508 iLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 508 LLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999885 4899999999974 467899999999999999999888753
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=311.09 Aligned_cols=209 Identities=31% Similarity=0.496 Sum_probs=181.9
Q ss_pred cccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 87 KIQERT--ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 87 ~~~~~~--iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
.|+++. +|+|||++|.+||.++++||||||||||||+++|..+| ..|+|.+||.++.. ....-|.|||++.++|
T Consensus 12 ~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P---~~G~i~l~~r~i~g-PgaergvVFQ~~~LlP 87 (259)
T COG4525 12 SYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG-PGAERGVVFQNEALLP 87 (259)
T ss_pred ecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc---ccceEEECCEeccC-CCccceeEeccCccch
Confidence 344444 99999999999999999999999999999999999987 47999999987532 1223489999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||.||+.|+..++ .+++.++.+++.+.+..+||++..+ +++-+|||||||||.|||||+.+|++|+||||
T Consensus 88 Wl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~-----~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP 159 (259)
T COG4525 88 WLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEH-----KYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159 (259)
T ss_pred hhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccc-----cceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence 999999999998876 5678899999999999999998654 45668999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAMSY 308 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 308 (679)
+++||.-+++++.++|-++.+ .|+.++++||+.. +..-+++++++|+. ||++..=+++-...|
T Consensus 160 fgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 160 FGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999865 6999999999976 46668999999984 899987777644443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=368.62 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=174.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDI 161 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~ 161 (679)
+|+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.++||+|++.
T Consensus 13 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 89 (501)
T PRK11288 13 TFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP---DAGSILIDGQEMRFASTTAALAAGVAIIYQELH 89 (501)
T ss_pred EECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEECCCCCHHHHHhCCEEEEEechh
Confidence 34446799999999999999999999999999999999999876 37999999876421 24567999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||.||+.+.............+.+++++++++.+||.+..++. +..|||||||||+||++|+.+|++|||
T Consensus 90 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllL 164 (501)
T PRK11288 90 LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQMVEIAKALARNARVIAF 164 (501)
T ss_pred ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999998853211111123444556788999999998655544 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++..++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 165 DEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999888999999999975 57889999999999999876653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=327.95 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=169.4
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
..++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..+.
T Consensus 24 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~~--------~~~~ 92 (224)
T cd03220 24 GILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGRVSSL--------LGLG 92 (224)
T ss_pred hhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEchh--------hccc
Confidence 345678899999999999999999999999999999999999999999876 47999999865321 1112
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
..+.+.+||+||+.+....+ .....+.+++++++++.++|.+..++.+ +.||||||||++|||+|+.+|+++
T Consensus 93 ~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~ll 164 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDIL 164 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 34557799999998765432 1233445567888999999987766554 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++.|
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999877899999999965 577899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=337.27 Aligned_cols=216 Identities=19% Similarity=0.295 Sum_probs=173.3
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCcc------ccccCcEE
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPT------KHISKRTG 154 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~------~~~~~~i~ 154 (679)
+++++|+++++|+|+|++|++||+++|+||||||||||+|+|+|+..+.. ..+|+|.++|.+.. ...++.++
T Consensus 15 ~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 94 (264)
T PRK14243 15 NLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIG 94 (264)
T ss_pred eeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEE
Confidence 33334445679999999999999999999999999999999999875311 25799999997542 13456799
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++|++.+++ .||.||+.+....+ ... .+..++++++++.+++.+..+. ..+..+..||||||||++|||||+.
T Consensus 95 ~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 95 MVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKD-KLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred EEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHH-HhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999998887 49999998764322 111 2234556777888887431111 1134566899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe---------CCeEEEecChhhH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS---------EGRCLYFGKGSEA 305 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~---------~G~iv~~G~~~~~ 305 (679)
+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++++.|+++++
T Consensus 169 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 169 QPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI 246 (264)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 9999999999999999999999999999976 589999999965 5889999999998 7999999998876
Q ss_pred H
Q 005754 306 M 306 (679)
Q Consensus 306 ~ 306 (679)
.
T Consensus 247 ~ 247 (264)
T PRK14243 247 F 247 (264)
T ss_pred H
Confidence 3
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=331.71 Aligned_cols=221 Identities=28% Similarity=0.363 Sum_probs=173.2
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc----c-ccCcEEEEe
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK----H-ISKRTGFVT 157 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~ 157 (679)
+++|+++.+|+|+|++|++||+++|+||||||||||+++|+|+. +| .+|+|.++|.+... . .++.++|++
T Consensus 8 ~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (248)
T PRK09580 8 HVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSPEDRAGEGIFMAF 84 (248)
T ss_pred EEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCHHHHhhcceEEEe
Confidence 33444567999999999999999999999999999999999985 34 47999999976532 1 235699999
Q ss_pred cCCCCCCCCCHHHHHHHHhh-hcC--C-CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 158 QDDILYPHLTVRETLVFCSL-LRL--P-RTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|++.+++.+|+.+++.+... .+. . ......+..+.+++.++.+++. +..++.+. +.|||||||||+|||||
T Consensus 85 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral 160 (248)
T PRK09580 85 QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMA 160 (248)
T ss_pred cCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHH
Confidence 99998888888777654321 110 0 0011223356678889999995 33333221 26999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|++++|++|++++.|+++.+ +.++.
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~-~~~~~ 238 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV-KQLEE 238 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH-HHHHh
Confidence 9999999999999999999999999999999888899999999965 45555 899999999999999998755 44444
Q ss_pred cCC
Q 005754 312 VGF 314 (679)
Q Consensus 312 ~g~ 314 (679)
.++
T Consensus 239 ~~~ 241 (248)
T PRK09580 239 QGY 241 (248)
T ss_pred cCC
Confidence 433
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=322.91 Aligned_cols=170 Identities=56% Similarity=0.937 Sum_probs=152.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lT 167 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+. +| .+|+|.++|++... ..++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 56999999999999999999999999999999999998 65 47999999987543 35678999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
++||+.+..... .||||||||++|||||+.+|++++|||||+|
T Consensus 99 ~~~~i~~~~~~~-------------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~ 141 (194)
T cd03213 99 VRETLMFAAKLR-------------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSG 141 (194)
T ss_pred HHHHHHHHHHhc-------------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 999997642100 4999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||+.+++.+.+.|++++++|+|+|+++|++..++.+++|++++|++|++++.|
T Consensus 142 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999998779999999999865678899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=355.32 Aligned_cols=215 Identities=28% Similarity=0.435 Sum_probs=192.3
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKR 152 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~ 152 (679)
....++.+|+|+..++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|+|.++|++.. ......
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCC
Confidence 445678889999999999999999999999999999999999999999999874 799999998653 234568
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHhhhcC-CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 153 TGFVTQDDILYPHLTVRETLVFCSLLRL-PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 153 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
|+.|+|+..+.|+|||.||+.++...+. ...++.+..++++.++|+.+|+....+++++ .||.||||.|+||||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArA 159 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARA 159 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHH
Confidence 9999999999999999999987765443 2335677888899999999999644667666 599999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|..+++||+||||||+|+....+.+.+.+++|+++|.+||++||.. ++++++|||+.+|.||+.+..++
T Consensus 160 l~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 160 LSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999996 57999999999999999998887
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=339.64 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=168.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccc-cCcEEEEecCCCCC--CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI-SKRTGFVTQDDILY--PHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~-~~~i~yv~Q~~~l~--~~lT 167 (679)
+.+|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+..... ++.++|++|++.+. ...+
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEhHHhhccceEEEeccccccccCCCcc
Confidence 5699999999999999999999999999999999999886 4799999997654333 34699999997642 2347
Q ss_pred HHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 168 VRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 168 V~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
++|++.+....... ........+++++++++.+||.+..++.+ ..||||||||++||+||+.+|++++|||||+
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 171 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFLARAIAQQGQVILLDEPFT 171 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 89988653211000 00112233456788999999987666554 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+.+++.+.+.|++++++|+|||++||++. ++.++||+++++ +|++++.|+++++
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 172 GVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999878999999999965 578999999877 8999999988765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=403.23 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=195.8
Q ss_pred CccCCCCccccccc--cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccC
Q 005754 77 SSTDDQGSTAKIQE--RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISK 151 (679)
Q Consensus 77 ~~~~~~~~~~~~~~--~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~ 151 (679)
.++..++++|+|++ +.+|+|||+.|++||+++|+||||||||||+|+|+|..+|+ +|+|.++|.+... ..++
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHHHhh
Confidence 34566777888875 57999999999999999999999999999999999999864 7999999977532 3466
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
.+||+||++.+++.+||+|++.+.+.++ ..++++.+++++++++.+||.+.+|++++ +|||||||||+||+|
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIA 2084 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHH
Confidence 7999999999999999999999876654 23445556778899999999887776554 699999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
|+.+|+|+||||||+|||+.+++.+.+.|++++++|+|||++||++. ++.++|||+++|++|+++..|+++++.+.|.
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999999999999888999999999964 6899999999999999999999999988775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=373.88 Aligned_cols=205 Identities=25% Similarity=0.359 Sum_probs=176.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
+.+|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... ..+++++||+|++ .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~ 413 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES---QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYAS 413 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhh
Confidence 4699999999999999999999999999999999999886 37999999975421 2356899999997 5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++.+||.||+.+....+ ....+++..++++++|+.+||. +..+ +++++|||||||||+|||||+.+|++||
T Consensus 414 l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~-----~~~~~LSgGqrQRv~iAraL~~~p~lll 486 (623)
T PRK10261 414 LDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAW-----RYPHEFSGGQRQRICIARALALNPKVII 486 (623)
T ss_pred cCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhh-----CCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 889999999998754332 1112444557788999999996 4344 4566899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||+|++|++|++++.|+++++.
T Consensus 487 lDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 487 ADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999875 899999999965 588999999999999999999988863
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=334.51 Aligned_cols=210 Identities=23% Similarity=0.336 Sum_probs=171.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEECCCCcc--------ccccCcEEEEecC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILTNNNKPT--------KHISKRTGFVTQD 159 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~~g~~~~--------~~~~~~i~yv~Q~ 159 (679)
++.+|+|+|++|++||+++|+||||||||||+++|+|+.+|..+ .+|+|.++|.+.. ...++.++|++|+
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 35699999999999999999999999999999999999875322 5899999986532 1345679999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++. ||+||+.+..... ........+++++++++.+++.+.... .-++.+..||||||||++|||+|+.+|+++
T Consensus 108 ~~~~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll 183 (265)
T PRK14252 108 PNPFPK-SIFENVAYGLRIR--GVKRRSILEERVENALRNAALWDEVKD-RLGDLAFNLSGGQQQRLCIARALATDPEIL 183 (265)
T ss_pred CcCCcc-hHHHHHHhHHHHc--CCChHHHHHHHHHHHHHHcCCchhhhH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 998886 9999998764322 111122234567788888887421111 113345679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.++||++++|++|+++..|+.++.
T Consensus 184 llDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 184 LFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999976 689999999965 57889999999999999999988765
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=366.51 Aligned_cols=214 Identities=29% Similarity=0.409 Sum_probs=178.3
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECC-------------------
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNN------------------- 142 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g------------------- 142 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||||+|+|+. +| .+|+|.++|
T Consensus 6 l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~~~~~~~~~~~~~~g~~~ 82 (520)
T TIGR03269 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYHVALCEKCGYVERPSKVGEPC 82 (520)
T ss_pred EEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEecccccccccccccccccccc
Confidence 344455567999999999999999999999999999999999986 44 478888862
Q ss_pred ----CCc----------c----ccccCcEEEEecC-CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005754 143 ----NKP----------T----KHISKRTGFVTQD-DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203 (679)
Q Consensus 143 ----~~~----------~----~~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 203 (679)
.+. . ...++.++|++|+ +.+++.+||+||+.+..... ..+..+.+++++++++.+||+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 83 PVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred ccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCh
Confidence 111 0 1234679999997 67888999999998865432 123445567889999999998
Q ss_pred ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHH
Q 005754 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVY 282 (679)
Q Consensus 204 ~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~ 282 (679)
+..+. .++.|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||++. .+.
T Consensus 160 ~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~ 233 (520)
T TIGR03269 160 HRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIE 233 (520)
T ss_pred hhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHH
Confidence 76554 4557999999999999999999999999999999999999999999999976 4999999999975 477
Q ss_pred HhCCeEEEEeCCeEEEecChhhHHHHH
Q 005754 283 QMFDKVLVLSEGRCLYFGKGSEAMSYF 309 (679)
Q Consensus 283 ~~~D~v~lL~~G~iv~~G~~~~~~~~f 309 (679)
++||++++|++|++++.|++++..+.+
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 899999999999999999988876644
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=335.21 Aligned_cols=201 Identities=27% Similarity=0.450 Sum_probs=160.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+||++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP---TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 4699999999999999999999999999999999999876 47999999976421 23567999999988876 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTS-----IAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+.... ....+..+ .+.+.++.+ ++.... +..++.|||||||||+||++|+.+|+++
T Consensus 92 tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~ll 161 (238)
T cd03249 92 TIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLV-----GERGSQLSGGQKQRIAIARALLRNPKIL 161 (238)
T ss_pred hHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceee-----ccCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999874321 11111111 112222333 333222 2345789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
+|||||+|||+.+++.+.+.|++++ +|+|||++||++. ++ ..||++++|++|++++.|+.++..+.
T Consensus 162 llDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 162 LLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999997 7999999999975 45 48999999999999999988776544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=325.27 Aligned_cols=194 Identities=26% Similarity=0.376 Sum_probs=164.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILY 163 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~ 163 (679)
+++++++.+|+++|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.++|++|++.++
T Consensus 18 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~ 94 (214)
T PRK13543 18 AFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQIDGKTATRGDRSRFMAYLGHLPGLK 94 (214)
T ss_pred EEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCeeEEECCEEccchhhhhceEEeecCcccc
Confidence 3344456799999999999999999999999999999999999886 37999999976532 2345699999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|+.||+.+....+. . ...+.++++++.++|.+..++.+ ..||||||||++|||+++.+|++++|||
T Consensus 95 ~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 95 ADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred cCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999987643321 1 12345678899999987666544 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||+|||+.+++.+.+.|++++++|.|||++||++. ++.+++|++++++.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999888999999999965 58899999999863
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=372.75 Aligned_cols=201 Identities=27% Similarity=0.420 Sum_probs=170.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+..+ .+++.++||+|++.+|+.
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI---DEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC---CCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-
Confidence 5699999999999999999999999999999999999987 47999999987532 467889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. +...++++ ++++++..| |++..||.+|+. .+.||||||||++|||||+++|+++
T Consensus 432 Ti~~Ni~~~~----~~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~il 502 (582)
T PRK11176 432 TIANNIAYAR----TEQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_pred hHHHHHhcCC----CCCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998742 11123333 444444444 445578888864 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|+++..|+.++..+
T Consensus 503 ilDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 503 ILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999854 799999999974 567899999999999999999888753
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=340.04 Aligned_cols=214 Identities=22% Similarity=0.385 Sum_probs=172.1
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc------cccCcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK------HISKRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~------~~~~~i~yv~Q~ 159 (679)
|+++.+|+++|++|++||+++|+|||||||||||++|+|++++. ...+|+|.++|.+... ..++.++|++|+
T Consensus 55 ~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~ 134 (305)
T PRK14264 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQS 134 (305)
T ss_pred eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccC
Confidence 33456999999999999999999999999999999999997531 1358999999975421 245689999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCC---------CCCC-HHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH
Q 005754 160 DILYPHLTVRETLVFCSLLRLP---------RTLS-TKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA 229 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 229 (679)
+.+++ .||+||+.+....... .... ....++.++++++.+++.+...... +..++.|||||||||+||
T Consensus 135 ~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LA 212 (305)
T PRK14264 135 PNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIA 212 (305)
T ss_pred Ccccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHH
Confidence 98887 4999999986432100 0011 2233566888999998853222222 345678999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE-EEEeCCeEEEecChhhH
Q 005754 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV-LVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 230 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v-~lL~~G~iv~~G~~~~~ 305 (679)
+||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++ ++|++|++++.|++++.
T Consensus 213 raL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 213 RCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999977 489999999975 578899997 57899999999998765
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=329.54 Aligned_cols=194 Identities=31% Similarity=0.509 Sum_probs=160.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 4699999999999999999999999999999999999876 37899999976421 23567999999998887 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc------CccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG------NSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
||.||+.+... ... .+.++++++.+++.+..+.... ...+..||||||||++||++|+.+|++|+
T Consensus 93 tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 163 (220)
T cd03245 93 TLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILL 163 (220)
T ss_pred hHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999976421 111 2345567788888765543221 12356899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++++|++|++++.|
T Consensus 164 lDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 164 LDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999764 89999999975 34 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=322.77 Aligned_cols=190 Identities=28% Similarity=0.432 Sum_probs=163.2
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+|++|++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|.+.. ...++.++|++|++
T Consensus 6 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (201)
T cd03231 6 LTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAP 82 (201)
T ss_pred EEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHhhhheEEecccc
Confidence 344455677999999999999999999999999999999999998763 789999987642 23567899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+|++||+.+.... ...++++++++.+|+.+..++. ++.||||||||++|||+|+.+|++++
T Consensus 83 ~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 83 GIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred ccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999874311 0234678899999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
|||||+|||+.++..+.+.|++++++|.|+|++||++. +....+|+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999888999999999976 477899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=323.74 Aligned_cols=191 Identities=26% Similarity=0.404 Sum_probs=161.6
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDDIL 162 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~~l 162 (679)
++++++++|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|.+.. ...++.++|++|++.+
T Consensus 9 ~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (204)
T PRK13538 9 CERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGI 85 (204)
T ss_pred EEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHhhhheEEeCCcccc
Confidence 3344567999999999999999999999999999999999998863 799999997643 2345679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|+.||+.+....+. . ...++++++++.+||.+..++. ++.||||||||++||+||+++|++++||
T Consensus 86 ~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllD 154 (204)
T PRK13538 86 KTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVALARLWLTRAPLWILD 154 (204)
T ss_pred CcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999988653321 1 2345678899999998765544 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
|||+|||+.++..+.+.|++++++|.|||++||++. .+.+..+|++++
T Consensus 155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999999999999877999999999975 466666777766
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=331.76 Aligned_cols=199 Identities=30% Similarity=0.461 Sum_probs=160.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++.
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 91 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP---QKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG- 91 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-
Confidence 4599999999999999999999999999999999999876 37899999976432 346679999999988875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN-------TIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+.... ... ..+++.++.+++.+..+ +.. +..++.|||||||||+||++|+.+|+++
T Consensus 92 tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 92 TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999764211 111 12233334333332211 111 2346789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.+++.+++.|++++ +|+|||++||++.. + ..||++++|++|++++.|+.++..
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999996 58999999999753 5 469999999999999999876654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=328.58 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=163.9
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD 160 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~ 160 (679)
++.|+++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++
T Consensus 14 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 90 (225)
T PRK10247 14 GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDISTLKPEIYRQQVSYCAQTP 90 (225)
T ss_pred EEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEcCcCCHHHHHhccEEEeccc
Confidence 3344456799999999999999999999999999999999999876 47999999875422 2456899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+++ .||+||+.+....+. .. ...++++++++.+|+. ...++ .++.||||||||++||++|+.+|+++
T Consensus 91 ~l~~-~tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 91 TLFG-DTVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cccc-ccHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8887 499999987543321 11 1234577899999995 33443 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEe-CCeEEEecC
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLS-EGRCLYFGK 301 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~-~G~iv~~G~ 301 (679)
+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+ ..||++++|+ ++..+.+|.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 999999999999999999999999764 899999999975 35 5799999995 455555554
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=364.78 Aligned_cols=205 Identities=32% Similarity=0.463 Sum_probs=173.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~ 161 (679)
+.+|+|+|++|++||+++|+||||||||||+|+|+|+.+ .+|+|.++|.+... ..++.++||+|++ .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~----~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 374 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN----SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSS 374 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC----CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhh
Confidence 579999999999999999999999999999999999974 37999999965421 1256799999996 4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++.+||.||+.+....+.. ..+..+.+++++++++.+||. +..++ .++.|||||||||+||++|+.+|++||
T Consensus 375 l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~la~al~~~p~lll 448 (529)
T PRK15134 375 LNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPAEFSGGQRQRIAIARALILKPSLII 448 (529)
T ss_pred cCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 78889999999886432211 123344556788999999996 34444 455799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+++..|+++++.
T Consensus 449 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 449 LDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred eeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999875 899999999965 588899999999999999999887763
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=314.25 Aligned_cols=162 Identities=37% Similarity=0.644 Sum_probs=146.1
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDDILY 163 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~~l~ 163 (679)
+++++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ...++.++|++|++.++
T Consensus 9 ~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 85 (173)
T cd03230 9 RYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLY 85 (173)
T ss_pred EECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccchHhhhccEEEEecCCccc
Confidence 33345699999999999999999999999999999999999876 3799999997643 23456899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+|+.||+. ||||||||++|||+|+.+|++++|||
T Consensus 86 ~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDE 121 (173)
T cd03230 86 ENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDE 121 (173)
T ss_pred cCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999873 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.+|++++|++|++
T Consensus 122 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 122 PTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999887999999999965 57789999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=363.23 Aligned_cols=220 Identities=24% Similarity=0.382 Sum_probs=177.9
Q ss_pred CCCCcccccc-----ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC-CCCc---c----
Q 005754 80 DDQGSTAKIQ-----ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN-NNKP---T---- 146 (679)
Q Consensus 80 ~~~~~~~~~~-----~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~-g~~~---~---- 146 (679)
..++++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.++ |.+. .
T Consensus 281 ~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 281 KVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred EEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEEecCCccccccccch
Confidence 3444444442 25699999999999999999999999999999999999876 37999996 5321 1
Q ss_pred ---ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHH
Q 005754 147 ---KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGER 223 (679)
Q Consensus 147 ---~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 223 (679)
...+++++|++|++.+++.+||.||+.+..... .+.++.+++++++++.+||.+.......++.++.||||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 123457999999998999999999998753221 2233345678899999999752100011344568999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+||+||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||++. .+.++||++++|++|+++..|++
T Consensus 434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999765 899999999975 58899999999999999999998
Q ss_pred hhHHH
Q 005754 303 SEAMS 307 (679)
Q Consensus 303 ~~~~~ 307 (679)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 77643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=371.00 Aligned_cols=203 Identities=33% Similarity=0.547 Sum_probs=173.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
++++|+|+|+++++||.+||+||||||||||+|.|.|+++| .+|+|.+||.+... .+|+.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 46799999999999999999999999999999999999986 48999999977542 57889999999999998
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHH-----HHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAE-----AVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~-----~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
-||+||+.++.. ..++++..+.++ +.+. .+.+..||.+| +....||||||||++||||++++|++|+
T Consensus 417 ~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 417 GTIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 699999998632 134444433333 2233 34567899999 4566799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+||+.+...+.+.++++. +++|+++++|+++. + +.+|+|++|++|++++.|++++...
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999887 57899999999854 4 4599999999999999999999865
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=378.35 Aligned_cols=197 Identities=30% Similarity=0.456 Sum_probs=168.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+.. ..+|+.+|||+|++.+|+.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p---~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG- 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-
Confidence 5699999999999999999999999999999999999987 4799999998754 2578899999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + .+.+ .+.++++..|+. +..||.+|+. ...||||||||++|||||+++|++|
T Consensus 542 TI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 542 SIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred cHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 2232 344555555543 4567888754 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+++.+.+.|+++ ++|+|++||+++ ..+.+|+|++|++|++++.|+.+++++
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999886 579999999974 467899999999999999999988753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=363.95 Aligned_cols=219 Identities=24% Similarity=0.374 Sum_probs=180.0
Q ss_pred cCCCCccccc---cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----ccc
Q 005754 79 TDDQGSTAKI---QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HIS 150 (679)
Q Consensus 79 ~~~~~~~~~~---~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~ 150 (679)
+..+++++.| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ..+|+|.++|++... ..+
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG--RWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred EEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC--CCCcEEEECCEECCCCCHHHHHH
Confidence 4456666666 345799999999999999999999999999999999999873 137999999865421 234
Q ss_pred CcEEEEecCC---CCCCCCCHHHHHHHHhhhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHH
Q 005754 151 KRTGFVTQDD---ILYPHLTVRETLVFCSLLRLPR--TLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 151 ~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerq 224 (679)
+.++|++|++ .+++.+||.||+.+........ ..+.++.+++++++++.+++. +..++. ++.|||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~kq 412 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLSGGNQQ 412 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCCHHHHH
Confidence 5799999995 4788899999998753211110 112334456788999999996 455554 4579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||+. ++.++||++++|++|+++..|++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999999999999888999999999965 5889999999999999999998765
Q ss_pred H
Q 005754 305 A 305 (679)
Q Consensus 305 ~ 305 (679)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 4
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=368.31 Aligned_cols=198 Identities=23% Similarity=0.346 Sum_probs=171.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.+||+|+||||||||+|+|+|+++|+ +|+|.+||.+..+ .++++++||+|++.+|+.
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~- 429 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD- 429 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-
Confidence 35899999999999999999999999999999999999874 7899999987542 568899999999999987
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. ..++ ++++++++.+|+. +..||.+|+ ....||||||||++|||||+++|+|+
T Consensus 430 Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 430 TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998752 1222 2355566666644 456788875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|+++..|+.++..
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999865 699999999974 46789999999999999999998874
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=363.74 Aligned_cols=211 Identities=27% Similarity=0.403 Sum_probs=175.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC--CCeeeEEEECCCCccc-------ccc-CcEEEEecCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG--HGLTGTILTNNNKPTK-------HIS-KRTGFVTQDD 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~--~~~~G~i~~~g~~~~~-------~~~-~~i~yv~Q~~ 160 (679)
+.+|+|+||++++||+++|+||||||||||||+|+|+++|. ...+|+|.++|.+... ..+ +.+||++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 57999999999999999999999999999999999998752 1258999999976421 122 5799999997
Q ss_pred C--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 161 I--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 161 ~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
. +++.+|++|++.+..... ...+..+..++++++++.+||.+..+ ..++.+++|||||||||+|||||+.+|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~--~~~~~~~~LSgGe~qrv~iAraL~~~p~l 177 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAK--RLTDYPHQLSGGERQRVMIAMALLTRPEL 177 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHH--HHhhCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 4 677789999987643221 12334556678899999999975221 11334567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||||++|++|++++.|+++++.
T Consensus 178 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999875 899999999975 578899999999999999999887763
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=330.18 Aligned_cols=194 Identities=29% Similarity=0.431 Sum_probs=163.7
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++.+|+|+||+|++||+++|+|||||||||||++|+|+.+| .+|+|.+++ +..++|++|++.+++
T Consensus 11 ~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~~-------~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 11 SVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNG-------KLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC-------ccCEEEecccccccc
Confidence 3344456799999999999999999999999999999999999876 478999876 246999999987777
Q ss_pred CC--CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 165 HL--TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 165 ~l--TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
.+ |+.+++.+. + ... .+++.++++.+||.+..++. ++.||||||||++||++|+.+|+++|||
T Consensus 81 ~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lllLD 145 (251)
T PRK09544 81 TLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLLARALLNRPQLLVLD 145 (251)
T ss_pred ccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 63 788876431 1 111 23467889999998766554 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+ |+++..|++++.
T Consensus 146 EPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~ 207 (251)
T PRK09544 146 EPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVV 207 (251)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHH
Confidence 999999999999999999999875 899999999965 5788999999996 579999988765
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=376.57 Aligned_cols=219 Identities=29% Similarity=0.540 Sum_probs=184.5
Q ss_pred eEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH
Q 005754 44 ITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNV 123 (679)
Q Consensus 44 ~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~ 123 (679)
-.++|+|++|+.+.+. +..||+|+|+.|++|+.+||+|||||||||++++
T Consensus 349 g~ief~nV~FsYPsRp------------------------------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~L 398 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRP------------------------------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQL 398 (1228)
T ss_pred cceEEEEEEecCCCCC------------------------------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHH
Confidence 4589999999886432 3569999999999999999999999999999999
Q ss_pred HhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHH-----H
Q 005754 124 LAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIA-----E 194 (679)
Q Consensus 124 L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~ 194 (679)
|.+++.| .+|+|.+||.+.. +.+|.+||.|.|+|.+|. .|++||+.|+. .+.+.++..+.. .
T Consensus 399 L~RfydP---~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~i~~a~k~ana~ 469 (1228)
T KOG0055|consen 399 LARFYDP---TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREEIEEAAKAANAH 469 (1228)
T ss_pred HHHhcCC---CCceEEEcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHHHHHHHHHccHH
Confidence 9999987 4899999998864 356889999999998886 69999999863 122333332222 2
Q ss_pred HHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 005754 195 AVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM 274 (679)
Q Consensus 195 ~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~t 274 (679)
+.+ ..|.+..||.+|++.+. ||||||||++|||||+++|+|||||||||+||++++..+.+.|.++. +|+|.|+++
T Consensus 470 ~fi--~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVa 545 (1228)
T KOG0055|consen 470 DFI--LKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVA 545 (1228)
T ss_pred HHH--HhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEe
Confidence 222 35677889999986554 99999999999999999999999999999999999999999998875 489999999
Q ss_pred CCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 275 HQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 275 H~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|+.+. + +.+|++++|++|++++.|+++|+++
T Consensus 546 HRLSt-I-rnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 546 HRLST-I-RNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred eehhh-h-hccCEEEEEECCEEEEecCHHHHHh
Confidence 99764 5 4599999999999999999999875
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=378.83 Aligned_cols=198 Identities=29% Similarity=0.459 Sum_probs=168.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+..+ .+|+.++||+|++.+|+.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG- 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-
Confidence 56999999999999999999999999999999999999874 7999999987542 568899999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. + ..+.++ +.++++..++ ....||.+|+. ...||||||||++|||||+++|++|
T Consensus 568 Ti~eNi~l~~----~-~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p~il 637 (710)
T TIGR03796 568 TVRDNLTLWD----P-TIPDAD----LVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRLEIARALVRNPSIL 637 (710)
T ss_pred cHHHHhhCCC----C-CCCHHH----HHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 9999998642 1 123332 3444444444 34567888754 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+.+.|++ .++|+|++||+++ ..+.||+|++|++|+++..|+.+++++
T Consensus 638 iLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 638 ILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999986 4899999999975 457799999999999999999998764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=319.61 Aligned_cols=183 Identities=31% Similarity=0.421 Sum_probs=154.7
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCCCeeeEEEECCCCccc----c-ccCcEEEEe
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHGLTGTILTNNNKPTK----H-ISKRTGFVT 157 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~ 157 (679)
+++|+++.+|+|+|+++++||+++|+||||||||||+|+|+|.. +| .+|+|.++|.+... . .++.++|++
T Consensus 7 ~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (200)
T cd03217 7 HVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPPEERARLGIFLAF 83 (200)
T ss_pred EEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCHHHHhhCcEEEee
Confidence 34444567999999999999999999999999999999999984 43 57999999976532 1 234599999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++..|+++++. ...+.||||||||++|||+|+.+|+
T Consensus 84 q~~~~~~~~~~~~~l~---------------------------------------~~~~~LS~G~~qrv~laral~~~p~ 124 (200)
T cd03217 84 QYPPEIPGVKNADFLR---------------------------------------YVNEGFSGGEKKRNEILQLLLLEPD 124 (200)
T ss_pred cChhhccCccHHHHHh---------------------------------------hccccCCHHHHHHHHHHHHHhcCCC
Confidence 9999898888887660 0113599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHH-hCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQ-MFDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~-~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
+++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|++++|++|++++.|+. ++.++|.+
T Consensus 125 illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~~~ 197 (200)
T cd03217 125 LAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELALEIEK 197 (200)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHHhhhcc
Confidence 99999999999999999999999999877999999999975 4666 7999999999999999944 45555543
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=370.01 Aligned_cols=208 Identities=26% Similarity=0.371 Sum_probs=174.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc-------------c-c---cc-cCc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP-------------T-K---HI-SKR 152 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~-------------~-~---~~-~~~ 152 (679)
.++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|... . . .. ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999864 68887776421 1 0 12 247
Q ss_pred EEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 153 TGFVTQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 153 i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
+|||+|++ .+++.+||.||+.+...... ..+..+.+++++++++.+||.+..+ ..++++.+|||||||||+||+
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~~~~~~~~LSgGq~QRv~iA~ 181 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--ILSRYPHQLSGGMRQRVMIAM 181 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--HHhCCCccCCHHHHHHHHHHH
Confidence 99999997 68889999999998754321 2345556678899999999964210 123456789999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++||++. .+.++||||++|++|++++.|+++++.
T Consensus 182 AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 999999999999999999999999999999999865 999999999965 578999999999999999999987763
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=329.94 Aligned_cols=199 Identities=30% Similarity=0.487 Sum_probs=159.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|++|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 89 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D 89 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c
Confidence 5699999999999999999999999999999999999876 47899999976432 34567999999998886 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTS-----IAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+.... .+..+..+ .+.+.++.+ ++.. .+ ++.++.||||||||++||++|+.+|+++
T Consensus 90 tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l~~~~~~----~~-~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 90 TIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRFPDGYDT----IV-GERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred hHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccc----hh-hcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999875311 11211111 112223332 2222 22 2345689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+.++..
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999977 9999999999753 5 459999999999999999876653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=348.07 Aligned_cols=199 Identities=31% Similarity=0.522 Sum_probs=170.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
++||+++||+|++||-+||+|+|||||||+||+|.+... .+|+|.+||.+..+ .+|+.|||||||..||.+
T Consensus 365 ~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d----~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd- 439 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD----YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND- 439 (591)
T ss_pred CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc----cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-
Confidence 459999999999999999999999999999999999886 38999999998643 578899999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-------GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||.+|+.|+.. ..+.++..+ +.++. .+++..+|.+|++ ...|||||||||+||||++++|+|+
T Consensus 440 TIl~NI~YGn~-----sas~eeV~e----~~k~a~~hd~i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa~lKda~Il 509 (591)
T KOG0057|consen 440 TILYNIKYGNP-----SASDEEVVE----ACKRAGLHDVISRLPDGYQTLVGER-GLMLSGGEKQRVSLARAFLKDAPIL 509 (591)
T ss_pred hHHHHhhcCCC-----CcCHHHHHH----HHHHcCcHHHHHhccccchhhHhhc-ccccccchHHHHHHHHHHhcCCCeE
Confidence 99999998742 234443332 33333 3456677888864 5669999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
++|||||.||.++..++++.+++ ...|+|+|++.|+.. ...-||+|++|++|++...|+.++++.
T Consensus 510 ~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 510 LLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999 345899999999964 678899999999999999999999876
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=297.51 Aligned_cols=212 Identities=31% Similarity=0.462 Sum_probs=183.6
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc------c----ccccC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP------T----KHISK 151 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~------~----~~~~~ 151 (679)
.++...||..++|.||+++.+.||-+.++||||+|||||++.|.-+..|. +|+..+.|... . ..+|+
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~---sg~l~ia~~~fd~s~~~~~k~i~~lr~ 82 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRDLRR 82 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC---CCeEEecccccccccCccHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999877653 67777765431 1 24678
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 152 RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 152 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
.+|+|+|+-.++|.+||.||+.-+- .+. ..+++++.+.++.++|+++.|.+.+| +++-.|||||+|||+||||
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqrvaiara 155 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccc-----cCceecccchhhhHHHHHH
Confidence 9999999999999999999996532 121 24678888899999999999998776 4566799999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
|+.+|.+|++||||++|||+-..++++++++|+..|.|-+++||... -..+.+.+|+.|.+|+|++.|+.+.
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999999999999999999999999999999965 4678999999999999999998653
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=313.51 Aligned_cols=217 Identities=26% Similarity=0.425 Sum_probs=192.0
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEE
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFV 156 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv 156 (679)
.++++|.|+++.+|+++|++|++|.+++++|||||||||||.+++.+++. .+|+|.++|.+.. +.+.++++..
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~---d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK---DSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc---cCceEEEeeeecccCChHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999875 4899999998753 3567889999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
-|+...-..+||+|-+.|+..... .....++.+..+++.++.++|++..|+ +..+||||||||.-||..++.+.
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dr-----yLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDR-----YLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHH-----hHHhcccchhhhhhhheeeeccC
Confidence 999998889999999999743221 223456777889999999999987664 45579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+.++||||.++||-....++|+.|++++++ |+||+++.||.+. .-.++|+|+-|++|+++..|+++++.+
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHhcC
Confidence 999999999999999999999999999986 9999999999874 778999999999999999999998753
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=315.56 Aligned_cols=178 Identities=33% Similarity=0.502 Sum_probs=150.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCCC-
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDDI- 161 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~- 161 (679)
+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.. ...++.++|++|++.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 346799999999999999999999999999999999999876 4799999997642 123567999999973
Q ss_pred -CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 -LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 -l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
++ ..||+||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||++|||||+.+|++++
T Consensus 80 ~~~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lll 150 (190)
T TIGR01166 80 QLF-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLL 150 (190)
T ss_pred ccc-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44 479999998864322 123444556788999999998765544 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
|||||+|||+.+++.+.+.|++++++|+|||++||++.
T Consensus 151 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999999888999999999964
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=361.90 Aligned_cols=213 Identities=23% Similarity=0.392 Sum_probs=175.5
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i 153 (679)
...+++++.++ .+|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|++... ..++.+
T Consensus 266 l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 266 FEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHHHHHHCCc
Confidence 44555555442 4899999999999999999999999999999999998863 7999999875421 235679
Q ss_pred EEEecC---CCCCCCCCHHHHHHHHhhhc---CC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHH
Q 005754 154 GFVTQD---DILYPHLTVRETLVFCSLLR---LP---RTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGER 223 (679)
Q Consensus 154 ~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGer 223 (679)
|||+|+ ..+++.+||.||+.+....+ .. ........+++++++++.+||. +..++.+ +.||||||
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~ 415 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQ 415 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHH
Confidence 999998 46889999999998753211 00 0012233345678999999996 6565554 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|++|+++..++.
T Consensus 416 qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999999888999999999965 58899999999999999988865
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=323.68 Aligned_cols=198 Identities=23% Similarity=0.329 Sum_probs=170.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|. +++++|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G~I~~~g~---------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKVDRNGE---------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCE---------EeEEecccCCCCCCcH
Confidence 4567999999999999999999999999999999999998863 789999884 4577788777888999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
.||+.+..... ....++..+.++++++.+++.+..++. ++.||||||||++||++|+.+|++|||||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754332 123444556678889999998766544 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|+.++..+++.|.+++++|+|||++||++. .+.+++|++++|++|+++..|+.+++.+
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999878999999999965 5788999999999999999999887654
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=366.67 Aligned_cols=200 Identities=31% Similarity=0.531 Sum_probs=171.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|.++| .+|+|.+||.+..+ .+++.++||+|++.+|+.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP---QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA- 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-
Confidence 4689999999999999999999999999999999999986 47999999987532 567889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
|++||+.++. + ..+ ++.++++++..++.+ ..||.+|+ ....||||||||++|||||+++|++++
T Consensus 429 ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 429 TLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred cHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998753 1 112 234566777777754 35788875 366799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+||+.+++.+.+.|+++. +++|+|+++|+++. .+.+|++++|++|++++.|+.++.++
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999986 48999999999853 46799999999999999999888753
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=317.76 Aligned_cols=189 Identities=28% Similarity=0.404 Sum_probs=158.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDD 160 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~ 160 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.+... ..++.++|++|++
T Consensus 6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (198)
T TIGR01189 6 LACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRDEPHRNILYLGHLP 82 (198)
T ss_pred EEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccchHHhhhheEEeccCc
Confidence 34445567799999999999999999999999999999999999876 47999999976422 3456799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+++.+||.||+.+....+. . + .++++++++.+|+.+..++.+ +.||||||||++||++|+.+|++++
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~----~--~-~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 83 GLKPELSALENLHFWAAIHG----G--A-QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred ccccCCcHHHHHHHHHHHcC----C--c-HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 88998999999987543321 1 1 345778899999987665544 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l 290 (679)
|||||+|||+.++..+.+.|++++++|.|||++||++.. -.+++++.
T Consensus 151 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999998889999999999753 34677664
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=345.44 Aligned_cols=198 Identities=27% Similarity=0.357 Sum_probs=168.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+||++++||+++|+|||||||||||++|+|+.+| .+|+|.++|... ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~~~---------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGSAA---------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCEee---------eEEeccccCCCCcHHH
Confidence 4699999999999999999999999999999999999876 479999998541 2233445667789999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+..... ..+..+..++++++++.++|.+..++. ++.||||||||++|||||+.+|++|||||||+|||+
T Consensus 105 nL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754322 123445556778899999998766554 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHH
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYF 309 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f 309 (679)
.++..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.+.|
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999878999999999965 588899999999999999999998876544
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=312.84 Aligned_cols=165 Identities=39% Similarity=0.654 Sum_probs=147.0
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEec
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQ 158 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q 158 (679)
+++|+++++|+|+|+++++||+++|+||||||||||+|+|+|.+++ .+|+|.++|.+.. ...++.++|++|
T Consensus 7 ~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 83 (178)
T cd03229 7 SKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDELPPLRRRIGMVFQ 83 (178)
T ss_pred EEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchhHHHHhhcEEEEec
Confidence 3444456799999999999999999999999999999999999876 4799999997542 234568999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+++.+|++||+.+. ||||||||++||++|+.+|++
T Consensus 84 ~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~l 121 (178)
T cd03229 84 DFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDV 121 (178)
T ss_pred CCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCE
Confidence 99999899999987531 899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+++|++++|++|+
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999887 899999999965 5777999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=359.16 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=178.5
Q ss_pred cCCCCccccc---cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----cccc
Q 005754 79 TDDQGSTAKI---QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHIS 150 (679)
Q Consensus 79 ~~~~~~~~~~---~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~ 150 (679)
+..++++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| ..+|+|.++|++.. ...+
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG--KFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC--CCCeEEEECCEECCCCCHHHHHh
Confidence 4455666666 345799999999999999999999999999999999999874 13799999987642 1235
Q ss_pred CcEEEEecCC---CCCCCCCHHHHHHHHhhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHH
Q 005754 151 KRTGFVTQDD---ILYPHLTVRETLVFCSLLRLP--RTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 151 ~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerq 224 (679)
++++|++|+. .+++.+||+||+.+....... ........+++++++++.+++.+ ..++. ++.|||||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkq 410 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLSGGNQQ 410 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCCHHHHH
Confidence 6799999995 588999999999875321110 01123344567889999999964 44544 4579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChh
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|+++..++.+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999999888999999999965 588999999999999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=312.83 Aligned_cols=167 Identities=29% Similarity=0.475 Sum_probs=147.4
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFV 156 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv 156 (679)
+++++++ +|+|+|+++++||+++|+||||||||||+++|+|.++| .+|+|.++|.+... ..++.++|+
T Consensus 8 ~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (182)
T cd03215 8 RGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVTRRSPRDAIRAGIAYV 80 (182)
T ss_pred eccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCccCHHHHHhCCeEEe
Confidence 4444555 89999999999999999999999999999999999886 37999999976432 235689999
Q ss_pred ecCC---CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 157 TQDD---ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 157 ~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
+|++ .+++.+|++||+.+... ||||||||++||+||+
T Consensus 81 ~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 81 PEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred cCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHc
Confidence 9984 57888999999976310 8999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999877999999999964 58889999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=323.53 Aligned_cols=194 Identities=30% Similarity=0.467 Sum_probs=170.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--------ccccCcEEEEecCCCCCCCCC
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--------KHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--------~~~~~~i~yv~Q~~~l~~~lT 167 (679)
++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|.|.+||.... ...+|++||||||-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 677887775799999999999999999999999985 678888875421 124688999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+.||.|+.... .....+++.+.||++|..+ +++..|||||||||+|+|||+++|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~-----R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLD-----RYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHh-----hCCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999975321 2345678899999999665 56778999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 248 LDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||-..+.+++-.|++|.++ +..|+.+||.+ .|+.+++|+|++|++|++..+|+.+++.+
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 89999999995 57999999999999999999999998754
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=375.11 Aligned_cols=200 Identities=29% Similarity=0.417 Sum_probs=169.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+.. ..+|+.+|||+|++.+|+.
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g- 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG- 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-
Confidence 46999999999999999999999999999999999999874 799999998753 2568899999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++.. + ..+.++ +.++++..++ ....||.+|+ ....||||||||++|||||+++|++|
T Consensus 563 TI~eNi~l~~~---~-~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~il 633 (708)
T TIGR01193 563 SILENLLLGAK---E-NVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVL 633 (708)
T ss_pred HHHHHHhccCC---C-CCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999987521 1 223332 3334444333 4456888875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|+|++|++|+++..|+.++.++
T Consensus 634 iLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 634 ILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999985 4799999999975 467899999999999999999988754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=320.03 Aligned_cols=196 Identities=26% Similarity=0.422 Sum_probs=163.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC--CCCHHHHHHHHh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP--HLTVRETLVFCS 176 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~ 176 (679)
+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++.. ..++.++|++|++.+++ .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPG-KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccch-HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 468899999999999999999999999998763 799999998653 34567999999987643 479999998753
Q ss_pred hhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 005754 177 LLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255 (679)
Q Consensus 177 ~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~ 255 (679)
..... ........+++++++++.+|+++..++. +++||||||||++|||+|+.+|+++||||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 0011223345688899999998765544 45799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 256 i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
+.+.|++++++|+|||++||++. ++.++||+++++ +|++++.|++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 99999999878999999999965 588999999999 8999999988775
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=318.95 Aligned_cols=190 Identities=27% Similarity=0.407 Sum_probs=158.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC--C--Cccc-------cc-cCcEEEEec
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN--N--KPTK-------HI-SKRTGFVTQ 158 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g--~--~~~~-------~~-~~~i~yv~Q 158 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| . +... .. ++.++|++|
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q 97 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQ 97 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEec
Confidence 46999999999999999999999999999999999998863 68999984 2 2211 11 357999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.+++.+||+||+.+..... .....+..+++.++++.+||.+. .+. .+++||||||||++||++|+.+|+
T Consensus 98 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~laral~~~p~ 169 (224)
T TIGR02324 98 FLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATFSGGEQQRVNIARGFIADYP 169 (224)
T ss_pred ccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999998754321 12333445677889999999753 333 456799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+++|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.++||+++.+.
T Consensus 170 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 170 ILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999987899999999995 45678999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=372.66 Aligned_cols=198 Identities=28% Similarity=0.455 Sum_probs=166.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.. ..++++++||+|++.+|+.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g- 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG- 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-
Confidence 56999999999999999999999999999999999999874 799999998754 2467889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. + ..++ +.+.++++..++ ++..||.+|+. ...||||||||++|||||+++|+|+
T Consensus 570 TIreNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlalARALl~~p~IL 639 (711)
T TIGR00958 570 SVRENIAYGL----T-DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKPRVL 639 (711)
T ss_pred CHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 1222 234455555554 34567888753 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+++.+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|++++.|++++..+
T Consensus 640 ILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 640 ILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 9999999999999999988 22 235899999999975 457899999999999999999988754
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=319.94 Aligned_cols=193 Identities=26% Similarity=0.417 Sum_probs=158.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+||++++||+++|+||||||||||+++|+|..+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 92 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G 92 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c
Confidence 4699999999999999999999999999999999999876 47999999976432 34678999999998776 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN-------TIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+.. .... +++.+.++.+++.+..+ +.. +..+..||||||||++|||+|+.+|+++
T Consensus 93 tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 93 TIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred hHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999986431 1111 23455566666654322 111 2356789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
+|||||+|||+.++..+.+.|+++.+ +.|||++||++.. +. .||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-II-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999864 6899999999753 54 599999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=359.86 Aligned_cols=200 Identities=24% Similarity=0.315 Sum_probs=168.5
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDIL 162 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l 162 (679)
+|+++.+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++|.+... ..++.++|++|++..
T Consensus 12 ~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 88 (490)
T PRK10938 12 RLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNT 88 (490)
T ss_pred EcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcch
Confidence 344456999999999999999999999999999999999998763 7899988865421 234569999998642
Q ss_pred --C------CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 163 --Y------PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 163 --~------~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+ ..+||+|++.+. .+.+++++++++.+||.+..++.+ ..|||||||||+||+||+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 89 DMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRF-----KYLSTGETRKTLLCQALMS 152 (490)
T ss_pred hhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 1 147888877431 123456888999999987666544 5799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|++++..
T Consensus 153 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 153 EPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999888999999999975 588999999999999999999887653
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=318.77 Aligned_cols=190 Identities=26% Similarity=0.419 Sum_probs=158.9
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYP 164 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~ 164 (679)
++|+++.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++
T Consensus 10 ~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 86 (207)
T PRK13539 10 CVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKP 86 (207)
T ss_pred EEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEeCcchhhHhhcEEecCCCcCCC
Confidence 334456799999999999999999999999999999999999876 47999999875321 25667999999998888
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+||+||+.+...... . ..+.++++++.+||.+..+.. ++.||||||||++||++|+.+|+++|||||
T Consensus 87 ~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 87 ALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred CCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999987543321 1 123478899999997655544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|+|||+.++..+.+.|++++++|+|||++||++. ++.. |+++.+..
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 155 TAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999888999999999975 3544 88887743
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=332.41 Aligned_cols=199 Identities=24% Similarity=0.338 Sum_probs=165.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
..+|+|+|++|++||+++|+|||||||||||++|+|+++ . +|+|.++|.+.. ..+++.++|++|++.+|+.
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~- 91 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG- 91 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-
Confidence 458999999999999999999999999999999999985 2 699999997653 2456789999999999985
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN------SFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
||+||+.... .... +.+.+.++.+||.+..+...+. .....||||||||++|||||+.+|+||+
T Consensus 92 tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 92 TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999996321 1122 3456677888887544432221 1244599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||++||+.+...+.+.|+++. +++|||+++|++. .+. .||||++|++|++++.|++++++.
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999875 4899999999974 454 599999999999999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=372.34 Aligned_cols=201 Identities=30% Similarity=0.525 Sum_probs=171.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+|+|+|+++| .+|+|.+||.+..+ .+|+.++||+|++.+|+.
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p---~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~- 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP---TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG- 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-
Confidence 4699999999999999999999999999999999999987 47999999987542 568899999999999985
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. + ..+.++ +.++++..+ +.+..||.+|+. ...||||||||++|||||+++|+++
T Consensus 554 TI~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRlalARall~~p~il 623 (694)
T TIGR03375 554 TLRDNIALGA----P-YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAVALARALLRDPPIL 623 (694)
T ss_pred hHHHHHhCCC----C-CCCHHH----HHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 123333 333444433 345678888864 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|++++.++.
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999864 799999999975 4678999999999999999999887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=303.82 Aligned_cols=219 Identities=30% Similarity=0.385 Sum_probs=189.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~l~~~ 165 (679)
++||++||++|++||+.+||||||||||||.++|+|.-.. ..++|+|.++|+++. ++.++.+...+|.|.-+|.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y-~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~G 95 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY-EVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPG 95 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc-eEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCC
Confidence 5799999999999999999999999999999999997543 247899999998863 3567789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.|+.+.|..+...+........+..+.+++.++.+++.+ ..++.+. .++|||||||..|+..++.+|++.+||||
T Consensus 96 V~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEkKR~EilQ~~~lePkl~ILDE~ 171 (251)
T COG0396 96 VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEKKRNEILQLLLLEPKLAILDEP 171 (251)
T ss_pred eeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchHHHHHHHHHHhcCCCEEEecCC
Confidence 999999987765432211113456677889999999987 5555554 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC--CeEEEEeCCeEEEecChhhHHHHHHHcCCCCC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF--DKVLVLSEGRCLYFGKGSEAMSYFESVGFSPS 317 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~--D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~ 317 (679)
-||||..+-+.|-+.++++++.|.+++++||.. ++..+. |+|.+|.+|+|+..|.+ ++.++++.-||.|-
T Consensus 172 DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred CcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence 999999999999999999999999999999984 577877 99999999999999999 88899999888653
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=338.90 Aligned_cols=213 Identities=28% Similarity=0.395 Sum_probs=190.5
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEE
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTG 154 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~ 154 (679)
..++.+|+|++..+++|||+++++||++||+|.||||||||+|+|.|.++|+ +|+|.++|++.. ...+..||
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCc
Confidence 4466788899899999999999999999999999999999999999999974 899999998742 24567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+|+|++.|+|++||.||+..+..-......+.++.+++++++.+++||+-..|.+++ .||-||||||.|-++|..
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYR 157 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHHHHHHHhc
Confidence 999999999999999999987643222345677888899999999999877777666 599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
+|++|||||||+-|-|...+++++.|++++++|+|||++||... |+.++|||+.+|.+|+++-..+
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999965 6999999999999999986655
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=362.35 Aligned_cols=199 Identities=30% Similarity=0.493 Sum_probs=168.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++| .+|+|.+||.+... .+++.++||+|++.+|+.
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 423 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP---QSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR- 423 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-
Confidence 3589999999999999999999999999999999999987 47899999977542 567889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..++++ +.++++.++ +++..||.+|+ ..+.||||||||++|||||+++|+++
T Consensus 424 Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~il 493 (588)
T PRK13657 424 SIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPIL 493 (588)
T ss_pred cHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998742 1 123332 333444444 34456777775 35679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||||+||+.+++.+.+.|+++. +++|+|++||+++ ..+.+|++++|++|+++..|+.++..
T Consensus 494 iLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 494 ILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999875 4799999999974 56889999999999999999987764
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=359.35 Aligned_cols=202 Identities=33% Similarity=0.543 Sum_probs=167.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|.++|+ +|+|.+||.+... ..++.++||+|++.+|+.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 46899999999999999999999999999999999999863 7999999976532 467889999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHH-----HHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTS-----IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|++||+.+.. + ..++++..+ ..++.++.+ .+..|+.+|+ ....||||||||++|||||+++|++++|
T Consensus 407 ti~~Ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 407 TVAENIARFG----E-NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred cHHHHHhccC----C-CCCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997532 1 123332221 123344433 3345666764 4678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.+++.+.+.|+++.++|+|+|+++|+++ ..+.||++++|++|++++.|++++..
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999998767899999999975 45789999999999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=324.49 Aligned_cols=191 Identities=28% Similarity=0.470 Sum_probs=156.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 102 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP---QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R 102 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-h
Confidence 3589999999999999999999999999999999999876 37899999976432 34567999999998876 5
Q ss_pred CHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLST---KEKTSIAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
||+||+.+.... ..... ......+++.++.+ |+++..+. .++.|||||||||+||++|+.+|+++||
T Consensus 103 tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llll 174 (226)
T cd03248 103 SLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQKQRVAIARALIRNPQVLIL 174 (226)
T ss_pred hHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999874321 11001 11112356778888 67654443 3567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
||||+|||+.++..+.+.|+++++ +.|||++||++. ++. .||++++|++|++
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 175 DEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999875 689999999976 454 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=314.63 Aligned_cols=184 Identities=22% Similarity=0.336 Sum_probs=155.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILY 163 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~ 163 (679)
+++++++|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|++... ..++.++|++|+..++
T Consensus 10 ~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 86 (200)
T PRK13540 10 DYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQSIKKDLCTYQKQLCFVGHRSGIN 86 (200)
T ss_pred EeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCCccccCHHHHHhheEEeccccccC
Confidence 34456799999999999999999999999999999999999886 47999999986532 3467899999999888
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+.... . .. ...++++++.+++.+..++++ ..||||||||++|||+|+.+|++|+|||
T Consensus 87 ~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~~lilDE 153 (200)
T PRK13540 87 PYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPC-----GLLSSGQKRQVALLRLWMSKAKLWLLDE 153 (200)
T ss_pred cCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 899999999875421 1 11 236788999999987555444 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v 288 (679)
||+|||+.++..+.+.|++++++|.|||++||++. ....+|..
T Consensus 154 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 154 PLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYE 196 (200)
T ss_pred CCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchh
Confidence 99999999999999999999878999999999964 34557654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=361.37 Aligned_cols=200 Identities=29% Similarity=0.475 Sum_probs=170.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+|+||||||||+|+|+|+++| .+|+|.+||.+.. ..+++.++||+|++.+|+.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~---~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~- 420 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP---DSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND- 420 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-
Confidence 4689999999999999999999999999999999999986 3799999997653 2467789999999999876
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.++. +...++ ++++++++.+|+ ++..||.+|+. .+.||||||||++|||+++++|+++
T Consensus 421 Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~il 491 (571)
T TIGR02203 421 TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPIL 491 (571)
T ss_pred cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998652 112233 334555565554 34567888864 5679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||||+||+.+++.+++.|+++. +++|+|++||++. ..+.||+|++|++|+++..|+.++..
T Consensus 492 lLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 492 ILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999885 4799999999974 57889999999999999999988864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=308.94 Aligned_cols=160 Identities=33% Similarity=0.557 Sum_probs=143.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCCCCCCH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~~~lTV 168 (679)
.+|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTL 91 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccH
Confidence 699999999999999999999999999999999999876 47899999976432 34667999999988876 699
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
+||+ +..||||||||++|||+|+.+|++++|||||+||
T Consensus 92 ~~~i------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 92 RNNL------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred HHhh------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 9886 2359999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|+.+++.+++.|+++. ++.|||++||++. .+ ..+|++++|++|++++.|
T Consensus 130 D~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 130 DPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred CHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 9999999999999995 5899999999975 35 579999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=307.40 Aligned_cols=155 Identities=34% Similarity=0.640 Sum_probs=140.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+++|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+... ..++.++|++|++.+++.
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~- 90 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG- 90 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-
Confidence 46999999999999999999999999999999999998863 7899999976432 346689999999988874
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
||+||+ ||||||||++||++|+.+|+++||||||+
T Consensus 91 tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 91 SIAENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred cHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 999886 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||+.++..+.+.|++++++|+|||++||++. .+ +.||++++|++|++
T Consensus 126 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 126 HLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 99999999999999999878999999999975 45 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=352.65 Aligned_cols=205 Identities=23% Similarity=0.396 Sum_probs=172.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCC---CCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDD---ILY 163 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~---~l~ 163 (679)
.+|+|+||+|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..++.+|||+|++ .++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 4799999999999999999999999999999999998763 7999999865421 2356799999995 578
Q ss_pred CCCCHHHHHHHHhhhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 164 PHLTVRETLVFCSLLRLP---RTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+||.||+.+....... .....++.+++++++++.+||. +..++. ++.|||||||||+||++|+.+|++|
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqrv~lA~al~~~p~ll 417 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLLSGGNQQKVAIARGLMTRPKVL 417 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 899999999874321100 0122334456788999999995 555554 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||||||+|||+.++..+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 418 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 418 ILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999888999999999965 68899999999999999999987664
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=353.36 Aligned_cols=204 Identities=19% Similarity=0.319 Sum_probs=172.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCC---CCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDD---ILY 163 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~---~l~ 163 (679)
.+++|+|++|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++.. ...++.++|++|++ .++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR---TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC---CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 589999999999999999999999999999999999876 4799999986542 12356799999996 488
Q ss_pred CCCCHHHHHHHHhhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 164 PHLTVRETLVFCSLLRL-PRT--LSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+|+.||+.+...... +.. ......++.++++++.+|+. +..++.++ .|||||||||+||++|+.+|++|
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEE
Confidence 89999999987432110 000 12233345688999999994 55665554 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|++++.|++++
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999988999999999965 5889999999999999999998765
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=343.17 Aligned_cols=200 Identities=33% Similarity=0.505 Sum_probs=172.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
.++|+|+|+++++||.+||+|+||||||||+..|.|-++|+ +|+|..||.+.. +.+++.+++++|...+|.+
T Consensus 351 ~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~- 426 (573)
T COG4987 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG- 426 (573)
T ss_pred cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-
Confidence 46999999999999999999999999999999999998864 899999998753 2367789999999999876
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|+++||..+. | +.+.+ .+.++++++||++ ..||.+|+ ..+.||||||||++|||+|++|.+++
T Consensus 427 Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~ 496 (573)
T COG4987 427 TLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLW 496 (573)
T ss_pred HHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeE
Confidence 9999998753 1 23333 3556677777764 45667774 57789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||.|||+.+++++++.|.+-++ |+|+|++||+... .+.||||++|++|++++.|++++.+.
T Consensus 497 lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 497 LLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 99999999999999999999998765 8999999999764 68899999999999999999988764
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=308.84 Aligned_cols=171 Identities=35% Similarity=0.595 Sum_probs=145.0
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~ 159 (679)
++++|+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|
T Consensus 5 l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q- 80 (180)
T cd03214 5 LSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQ- 80 (180)
T ss_pred EEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHH-
Confidence 34455556799999999999999999999999999999999999876 47899999875421 23345777777
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+++.+||.+..++ .++.||||||||++|||+|+.+|+++
T Consensus 81 ------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 81 ------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred ------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5566677654443 34579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+++|++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999876 899999999975 577899999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=330.75 Aligned_cols=186 Identities=28% Similarity=0.477 Sum_probs=161.8
Q ss_pred EECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCH
Q 005754 109 ILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLST 186 (679)
Q Consensus 109 llGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 186 (679)
|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.++|++|++.+++.+||+||+.|....+ ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p---~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP---DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPR 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCH
Confidence 6899999999999999999986 47999999976532 23567999999999999999999999875432 1234
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005754 187 KEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266 (679)
Q Consensus 187 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 266 (679)
.+.+++++++++.+||.+..++ .++.|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 5556778999999999876554 45579999999999999999999999999999999999999999999999765
Q ss_pred -CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 267 -GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 267 -g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||++||++. ++.++||++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999965 588999999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=311.32 Aligned_cols=183 Identities=24% Similarity=0.355 Sum_probs=152.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 96 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G 96 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c
Confidence 3689999999999999999999999999999999999876 47999999976421 34568999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
||+||+.+.. ....+ .+.+.++ + +..++.||||||||++|||+|+.+|+++||||||+
T Consensus 97 tv~~~l~~~~------~~~~~----~~~~~l~---~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 154 (207)
T cd03369 97 TIRSNLDPFD------EYSDE----EIYGALR---V---------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154 (207)
T ss_pred cHHHHhcccC------CCCHH----HHHHHhh---c---------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 9999996521 11211 1233333 2 23456799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+.++..+.+.|+++. +|+|+|++||++.. +. .+|++++|++|+++..|++
T Consensus 155 ~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 155 SIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred cCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 999999999999999985 48999999999753 54 4999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=324.71 Aligned_cols=199 Identities=24% Similarity=0.343 Sum_probs=158.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||+++|+|+||||||||+++|+|+++| .+|+|.++|.+... ..++.++|++|++.+++ .
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~ 109 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-G 109 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-c
Confidence 4699999999999999999999999999999999999876 47999999976532 34678999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKT-----SIAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.... ........ ..+++.++.+ |++. .++ ...+.||||||||++|||+|+.+|++|
T Consensus 110 tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~----~~~-~~~~~LS~G~~qrl~laral~~~p~ll 178 (257)
T cd03288 110 SIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDA----VVT-EGGENFSVGQRQLFCLARAFVRKSSIL 178 (257)
T ss_pred HHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCc----Eec-cCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999985321 01111111 1122333333 3332 222 345689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||+|||+.++..+.+.|+++. ++.|||++||++.. +. .||++++|++|+++..|+++++.+
T Consensus 179 llDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 179 IMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999975 48999999999764 54 499999999999999999877643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=351.64 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=169.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCC---CCCC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDD---ILYP 164 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~---~l~~ 164 (679)
+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.+... ..++.++|++|++ .+++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 699999999999999999999999999999999998763 7999999875422 1345799999984 4888
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
.+|+.||+......+..........++.++++++.+||. +..++++ +.|||||||||+||++|+.+|++|||||
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDE 429 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDE 429 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence 899999986421111111111223345688999999996 5555544 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
||+|||+.+++.+.+.|++++++|.|||++|||+. ++.++||++++|++|+++..|++++
T Consensus 430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999888999999999975 5889999999999999999887754
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=355.49 Aligned_cols=200 Identities=28% Similarity=0.450 Sum_probs=168.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||.++|+||||||||||+++|+|+++| .+|+|.+||.+... .+++.++||+|++.+|+.
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 403 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV---SEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD- 403 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-
Confidence 4689999999999999999999999999999999999986 47999999986532 457789999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..+.++ ++++++..+ +++..||.+|+. ...||||||||++|||||+++|+++
T Consensus 404 ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lARall~~~~il 473 (569)
T PRK10789 404 TVANNIALGR----P-DATQQE----IEHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIARALLLNAEIL 473 (569)
T ss_pred cHHHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998642 1 123332 333444443 345567888753 6679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||++||+.+++.+.+.|+++. +|+|+|++||+++ ..+.+|++++|++|+++..|+.++..+
T Consensus 474 llDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 474 ILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999985 5899999999974 457799999999999999999887643
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=355.57 Aligned_cols=199 Identities=29% Similarity=0.490 Sum_probs=167.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|++++|||.++|+||||||||||+|+|+|+++| .+|+|.+||.+.. ..+++.++|+||++.+|+.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p---~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~- 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP---QSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA- 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-
Confidence 5699999999999999999999999999999999999986 3789999997653 2457789999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..++ ++++++++..|+. +..|+.+|+ ....||||||||++||||++++|+++
T Consensus 429 Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~il 498 (576)
T TIGR02204 429 SVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPIL 498 (576)
T ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeE
Confidence 9999998742 1 1222 2344555555543 345677765 35679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||||||+||+.+++.+++.|+++. +++|+|++||++. ..+.+|+++.|++|+++..|++++..
T Consensus 499 ilDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 499 LLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 9999999999999999999999985 4899999999974 46789999999999999999988753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=310.38 Aligned_cols=178 Identities=29% Similarity=0.468 Sum_probs=143.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.+|+|+|++|++||+++|+||||||||||+++|+|+.+| .+|+|.++| +++|++|++.+++ .|++||
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~~~g---------~i~~~~q~~~l~~-~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK---LSGSVSVPG---------SIAYVSQEPWIQN-GTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEEEcC---------EEEEEecCchhcc-CcHHHH
Confidence 699999999999999999999999999999999999876 478999988 5999999998885 699999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
+.+... .... ...+.++.+++.+. .++.. +..+..||||||||++|||+|+.+|++++||||
T Consensus 86 l~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 86 ILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hccCCC------cCHH----HHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 987422 1111 12222333333211 12222 234678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 245 TSGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 245 tsgLD~~~~~~i~~-~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|+|||+.+++.+.+ +++++.++|+|||++||++. .+.. +|++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 99999999999998 56777666899999999975 4555 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=364.08 Aligned_cols=200 Identities=29% Similarity=0.537 Sum_probs=168.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|+|+++++||.++|+|+||||||||+|+|+|+++|+ +|+|.+||.+..+ .+++.++||+|++.+|+.
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~- 545 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR- 545 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-
Confidence 46899999999999999999999999999999999999864 7999999987542 567889999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..+.++ +.++++..+ +++..||.+++. ...||||||||++|||||+++|++|
T Consensus 546 ti~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LSgGq~qri~lARall~~~~il 615 (694)
T TIGR01846 546 SIRDNIALCN----P-GAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNPRIL 615 (694)
T ss_pred hHHHHHhcCC----C-CCCHHH----HHHHHHHcChHHHHHhCcCccCcEecCC-CCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999997642 1 223332 233333333 334567888754 6789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||++++|++|++++.|+.++..+
T Consensus 616 ilDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 616 IFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999985 5899999999975 346799999999999999999888653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=317.52 Aligned_cols=234 Identities=26% Similarity=0.414 Sum_probs=201.4
Q ss_pred CCCeEEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHH
Q 005754 41 CYPITLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTM 120 (679)
Q Consensus 41 ~~~~~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTL 120 (679)
..|+-++.+|+....+.+..- ++ .......++++||+++++||-++|+|.||||||||
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~---------~~-------------r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTl 329 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGF---------LR-------------RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTL 329 (534)
T ss_pred CCCceEEecceEEEEecCCcc---------cc-------------ccchheEEeccceeEecCCCeEEEEecCCCCcchH
Confidence 456678999998887765221 10 11234579999999999999999999999999999
Q ss_pred HHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHH
Q 005754 121 LNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTS 191 (679)
Q Consensus 121 L~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~ 191 (679)
=.+|.+++++ +|+|.++|++... -+|+++-.||||| .+-|.+||.|-+.-+.....| ..++.++++
T Consensus 330 G~allrL~~s----~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~ 404 (534)
T COG4172 330 GLALLRLIPS----QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQ 404 (534)
T ss_pred HHHHHhhcCc----CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHH
Confidence 9999999874 5999999988642 2467899999998 588999999999887766543 467889999
Q ss_pred HHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEE
Q 005754 192 IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTI 270 (679)
Q Consensus 192 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~ti 270 (679)
++.+.|+.+||+.. ..++++++.|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-
T Consensus 405 rv~~aL~EVGLDp~----~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsY 480 (534)
T COG4172 405 RVIEALEEVGLDPA----TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSY 480 (534)
T ss_pred HHHHHHHHcCCChh----HhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeE
Confidence 99999999999863 33688999999999999999999999999999999999999999999999999976 49999
Q ss_pred EEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 271 VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 271 i~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
++++||.. -+..+||+|++|++|+||+.|+.++++
T Consensus 481 LFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 481 LFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred EEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHHh
Confidence 99999975 588999999999999999999998874
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=351.29 Aligned_cols=202 Identities=28% Similarity=0.406 Sum_probs=165.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+++|+|.++| .+|+|.+||.+.. ..+++.++||+|++.+++ .
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 423 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP---TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-R 423 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC---CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-c
Confidence 3589999999999999999999999999999999999986 4799999997643 246788999999999887 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHH-----HHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEA-----VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~-----~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|++||+.++. + ..++++..+..+. .+. .+.+..|+.+|+ ....||||||||++|||||+++|++++|
T Consensus 424 ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 424 SIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999998742 1 1233333222221 121 233445666765 4667999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||+|||+.+++.+.+.|+++. +++|+|++||+++. .+.+|++++|++|+++..|+.++..+
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999999999999884 48999999999753 46799999999999999999887643
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=385.98 Aligned_cols=220 Identities=26% Similarity=0.414 Sum_probs=183.2
Q ss_pred EEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 005754 45 TLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 45 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L 124 (679)
.++|+||+|+.+.+ .++++|+|+||+|++|+.+||+||||||||||+++|
T Consensus 1165 ~I~f~nVsF~Y~~~------------------------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL 1214 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR------------------------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLL 1214 (1466)
T ss_pred eEEEEEEEEECCCC------------------------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 58999999987521 124699999999999999999999999999999999
Q ss_pred hcCcCCCC---------------------------------------------------CeeeEEEECCCCcc----ccc
Q 005754 125 AGRLHQGH---------------------------------------------------GLTGTILTNNNKPT----KHI 149 (679)
Q Consensus 125 ~G~~~~~~---------------------------------------------------~~~G~i~~~g~~~~----~~~ 149 (679)
.|+++|+. +.+|+|.+||.+.. +.+
T Consensus 1215 ~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~l 1294 (1466)
T PTZ00265 1215 MRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDL 1294 (1466)
T ss_pred HHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHH
Confidence 99998720 14899999998763 357
Q ss_pred cCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCcccCHHH
Q 005754 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-------GLTKCENTIIGNSFIRGISGGE 222 (679)
Q Consensus 150 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGe 222 (679)
|+.+|||+|++.+|+ .|++|||.++. + ..+.++ ++++++.. .|++..||.+|+ ....|||||
T Consensus 1295 R~~i~~V~Qep~LF~-gTIreNI~~g~----~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQ 1363 (1466)
T PTZ00265 1295 RNLFSIVSQEPMLFN-MSIYENIKFGK----E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQ 1363 (1466)
T ss_pred HhhccEeCCCCcccc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHH
Confidence 889999999999996 59999999862 1 233333 33333332 456678999995 466799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeC----CeEE
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSE----GRCL 297 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~----G~iv 297 (679)
|||++|||||+++|+|||||||||+||+.+++.|.+.|+++. .+++|+|+++|+++ ..+.||+|++|++ |+++
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEE
Confidence 999999999999999999999999999999999999999986 36899999999975 4678999999999 9955
Q ss_pred -EecChhhHHH
Q 005754 298 -YFGKGSEAMS 307 (679)
Q Consensus 298 -~~G~~~~~~~ 307 (679)
+.|+.+++++
T Consensus 1442 ~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1442 QAHGTHEELLS 1452 (1466)
T ss_pred EEecCHHHHHh
Confidence 8999988753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=361.32 Aligned_cols=220 Identities=28% Similarity=0.467 Sum_probs=188.1
Q ss_pred EEEEEeEEEEEEeccCCCCCccchhhcccCCCCccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHH
Q 005754 45 TLKFIDVCYRIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 45 ~l~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L 124 (679)
+++++|++++.+.+ .+.+||+|+|++|++|+-+||+|||||||||.+-+|
T Consensus 987 ~I~~~~V~F~YPsR------------------------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR------------------------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred EEEEeeeEeeCCCC------------------------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 48999999988732 246799999999999999999999999999999999
Q ss_pred hcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH-HH-
Q 005754 125 AGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV-MA- 198 (679)
Q Consensus 125 ~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~-l~- 198 (679)
-..+.| ..|.|.+||.+... .+|+++|.|.|+|.||.. |++|||.|+. .. .+.++..+.++.. +.
T Consensus 1037 eRfYdp---~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~----~~-vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1037 ERFYDP---DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS----EE-VSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred HHhcCC---CCCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC----CC-CCHHHHHHHHHHhhhHH
Confidence 999986 47999999988643 578999999999999975 9999999982 11 3444443332211 11
Q ss_pred -HcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 199 -ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 199 -~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
..+|++..||.+|++ ..+||||||||++||||+++||+||||||.||+||+++.+.+.+.|.+.. .|+|.|++.|++
T Consensus 1108 FI~sLP~GyDT~vGer-G~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRL 1185 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGER-GVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRL 1185 (1228)
T ss_pred HHhcCcCcccCccCcc-cCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecch
Confidence 147889999999964 56799999999999999999999999999999999999999999999875 489999999998
Q ss_pred cHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 278 SSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 278 ~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+. .+.||.|.++++|+|++.|+.+++++
T Consensus 1186 ST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1186 ST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred hh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 64 68899999999999999999999875
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=308.82 Aligned_cols=189 Identities=24% Similarity=0.363 Sum_probs=151.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~~ 161 (679)
++++|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+... ..++.++|++|++.
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 89 (218)
T cd03290 13 GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW 89 (218)
T ss_pred CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccchhhcceEEEEcCCCc
Confidence 357999999999999999999999999999999999998763 7999999875421 23467999999998
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN-------TIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
++ ..|++||+.+... ...+ ..+++++.+++.+..+ +.. +..+..||||||||++||++|+.
T Consensus 90 ~~-~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 90 LL-NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred cc-cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhh
Confidence 87 5799999976421 1111 2234455556543221 112 23467899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVS--TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
+|+++||||||+|||+.++..+++ .++.+.++|.|||++||++.. + ..+|++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 999999999999999999999998 677776678999999999753 5 5799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=292.03 Aligned_cols=195 Identities=29% Similarity=0.474 Sum_probs=170.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILY 163 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~ 163 (679)
-++.+||+++||.+++||..+|.||||||||||||+++.+.+|+ +|++++.|++.+ +.+|.+|+|+.|.+.+|
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 35678999999999999999999999999999999999999874 799999998864 36788999999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+. ||++|+.|.-..|..+ ..+++..+.|+++++.+. +.++.+..||||||||++|+|.|..-|+||+|||
T Consensus 90 g~-tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~----~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 90 GD-TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDS----ILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred cc-chhhccccchHHhccC-----CChHHHHHHHHHcCCchh----hhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 87 9999999976665322 234567788999999864 3344566799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 244 PTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||+||+.+++.|-++|.++. .+++.++.+||++. +..+.+|+++-+..|++
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 999999999999999999986 57999999999975 56789999999999876
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=299.99 Aligned_cols=152 Identities=38% Similarity=0.673 Sum_probs=136.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lT 167 (679)
.+|+|+|+++++||+++|+||||||||||+++|+|+.+| .+|++.++|.+... ..++.++|++|++.+++ .|
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t 91 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GT 91 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-ch
Confidence 699999999999999999999999999999999999886 37899999976432 34567999999988776 58
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
+.||+ ||||||||++||++|+.+|++++|||||+|
T Consensus 92 ~~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 92 IRENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred HHHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 88876 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
||+.++..+.+.|+++.+ ++|||++||++. .+.. ||++++|++|+
T Consensus 127 LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 127 LDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 999999999999999964 799999999975 4655 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=329.63 Aligned_cols=207 Identities=31% Similarity=0.515 Sum_probs=179.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~ 165 (679)
++++|+|+||.+++||.++|+||||||||||.|+|.|..+| .+|.|.+||.+.. +.+-+.|||.||+-.||+.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G 424 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEecchhhhcCCHHHhccccCcCcccceecCC
Confidence 47899999999999999999999999999999999999986 4899999997753 3567899999999999987
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHH-----HHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKE-----KTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
||.|||.= ...+.+.+. +.+.+.|++ +.+.+..||.+|+ ...+||||||||+++||||..+|.+++
T Consensus 425 -TIaeNIaR-----f~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 425 -TIAENIAR-----FGEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred -cHHHHHHh-----ccccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence 99999952 221222221 222344444 4568889999996 467899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
||||-|+||.+....+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++..+|+.+|++....
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 99999999999999999999999999999999999985 689999999999999999999999988764
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=294.43 Aligned_cols=151 Identities=33% Similarity=0.513 Sum_probs=134.7
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQD 159 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~ 159 (679)
+++|+++++|+|+|+++++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... ..++.++|++|
T Consensus 7 ~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q- 82 (163)
T cd03216 7 TKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDARRAGIAMVYQ- 82 (163)
T ss_pred EEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHHHhcCeEEEEe-
Confidence 3344456799999999999999999999999999999999999886 47999999876432 23456888888
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||||||||++|||+|+.+|+++
T Consensus 83 ----------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 83 ----------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred ----------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
+|||||+|||+.+++.+.+.|++++++|.|||++||++. ++.+.+|++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999877999999999964 5778999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=305.49 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=158.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEE-ECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-TNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~-~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
++|+|||++|++||+++|+||||||||||+|+|+|+.+|+ +|+|. ++|... .+.+++.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~~---------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDAL---------PLGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCcee---------ccccccccCCcCcHHH
Confidence 3799999999999999999999999999999999998764 67886 665422 1234567889999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+...... ...++. .+.+.+.++|+...++.+ +.||||||||++||++|+.+|+++||||||++||+
T Consensus 69 nl~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 9998654321 222222 233445667776665554 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
.++..+.+.|.+..+ ++|+|++||++. .+.++||++++|++|++++.|+.+++.++++.
T Consensus 138 ~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 138 ATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999999998865443 468999999975 57789999999999999999999998877653
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=302.51 Aligned_cols=182 Identities=23% Similarity=0.276 Sum_probs=150.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
|+++.+++ +|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|.+.....++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~t 86 (195)
T PRK13541 11 IEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMT 86 (195)
T ss_pred ECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCcccChhhhhhEEeccCCcCCCccCC
Confidence 33344555 9999999999999999999999999999999876 4799999998654322456899999988888899
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+||+.+..... . ..++++++++.+++.+..++. ++.||||||||++||++|+.+|++++|||||+|
T Consensus 87 v~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~ 153 (195)
T PRK13541 87 VFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARLIACQSDLWLLDEVETN 153 (195)
T ss_pred HHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999998754321 0 134567888999998765544 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v 288 (679)
||+.+++.+.+.|++..++|+|||++||++.. ...+|-+
T Consensus 154 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 154 LSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 99999999999998877779999999999753 3446654
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=305.91 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=177.8
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i 153 (679)
+..++++.++++|+||+|+|++|++||-.+|+|||||||||||++++|...|. +|.+.+.|+... .++|++|
T Consensus 32 i~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred EEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCCcchHHHHHHh
Confidence 34455555677899999999999999999999999999999999999998863 677777776532 4678999
Q ss_pred EEEecC--CCCCCCCCHHHHHHHH--hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH
Q 005754 154 GFVTQD--DILYPHLTVRETLVFC--SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA 229 (679)
Q Consensus 154 ~yv~Q~--~~l~~~lTV~E~l~~~--~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA 229 (679)
|+|.-. ..+.+..+|+|-+.-+ +..........++..+++..+++.+|+.+.+|+.++ .||-||||||.||
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~-----~LS~Ge~rrvLia 183 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIA 183 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh-----hcCHhHHHHHHHH
Confidence 999643 3455677888877532 222222212345667889999999999998887766 5999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR--GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 230 ~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|||+.+|++||||||++|||...++.+++.|.+++.. +.++|++||++. ++-..+++++++++|+++++|.
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999865 889999999965 6899999999999999999874
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=344.93 Aligned_cols=205 Identities=25% Similarity=0.440 Sum_probs=167.1
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|+ +|+|.++|. +.++|++|++.+++
T Consensus 8 s~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~-------~~i~~~~q~~~~~~ 77 (530)
T PRK15064 8 TMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN-------ERLGKLRQDQFAFE 77 (530)
T ss_pred EEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC-------CEEEEEeccCCcCC
Confidence 33444567999999999999999999999999999999999998863 789998863 35999999999999
Q ss_pred CCCHHHHHHHHhh-h-----------cCCCC-----------------CCHHHHHHHHHHHHHHcCCCccccccccCccC
Q 005754 165 HLTVRETLVFCSL-L-----------RLPRT-----------------LSTKEKTSIAEAVMAELGLTKCENTIIGNSFI 215 (679)
Q Consensus 165 ~lTV~E~l~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 215 (679)
.+||+|++.++.. . ..+.. ....+.+++++++++.+||.+..+ ++.+
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----~~~~ 153 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH----YGLM 153 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh----cCch
Confidence 9999999986421 0 00000 000122456788999999975322 1234
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++||++. .+.++||++++|++|+
T Consensus 154 ~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~ 229 (530)
T PRK15064 154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGE 229 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCE
Confidence 57999999999999999999999999999999999999999999864 5899999999965 5889999999999999
Q ss_pred E-EEecChhhHHH
Q 005754 296 C-LYFGKGSEAMS 307 (679)
Q Consensus 296 i-v~~G~~~~~~~ 307 (679)
+ ++.|++++..+
T Consensus 230 i~~~~g~~~~~~~ 242 (530)
T PRK15064 230 LRVYPGNYDEYMT 242 (530)
T ss_pred EEEecCCHHHHHH
Confidence 9 58898877543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=292.59 Aligned_cols=150 Identities=35% Similarity=0.543 Sum_probs=134.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+|+++++||+++|+||||||||||+++|+|+++| .+|+|.++|. +.++|++|++.++ ..|++|
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~-------~~i~~~~q~~~~~-~~tv~~ 82 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEG-------EDLLFLPQRPYLP-LGTLRE 82 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCC-------ceEEEECCCCccc-cccHHH
Confidence 5699999999999999999999999999999999999876 3789998763 5799999998765 579999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
|+.+. .++.||||||||++|||+|+.+|++++|||||+|||+
T Consensus 83 nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 83 QLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred Hhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 98642 1246999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
.++..+.+.|+++ +.|+|++||++. ....+|++++|++|
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 9999999999986 689999999974 45799999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=306.59 Aligned_cols=188 Identities=23% Similarity=0.288 Sum_probs=153.5
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 93 ILNGITGMVS-----PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 93 iL~~vs~~i~-----~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
.++|++++++ +||+++|+|||||||||||++|+|+.+|+ +|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc--------eEEEecccccCCCCCC
Confidence 5566666665 79999999999999999999999998864 789998874 5899999988777899
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+|++.+...... . .....+++++.++|.+..++. ++.|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976432110 1 122357789999998765544 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE--EecChhh
Q 005754 248 LDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL--YFGKGSE 304 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv--~~G~~~~ 304 (679)
||+.++..+.+.|+++++ .|+|||++||++. .+..+||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999976 4899999999965 577899999999764433 3445544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=313.46 Aligned_cols=189 Identities=29% Similarity=0.454 Sum_probs=152.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+|++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| .++|++|++.+++. ||+|
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g---------~i~yv~q~~~l~~~-tv~e 116 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSG---------RISFSSQFSWIMPG-TIKE 116 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------EEEEEeCccccccc-CHHH
Confidence 45899999999999999999999999999999999998863 78999887 38999999988875 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
|+.+.... ... .+.+.++.+++.+. .++.++ ..+..||||||||++||++|+.+|+++||||
T Consensus 117 nl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 117 NIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred Hhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99864211 111 12223333343321 122232 2456899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTL-GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L-~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||++++|++|++++.|+++++.
T Consensus 186 Pt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 186 PFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999865 5554 47999999999754 4 689999999999999999988764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=339.42 Aligned_cols=213 Identities=23% Similarity=0.352 Sum_probs=170.7
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcE
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRT 153 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i 153 (679)
+..++++++ .+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+| .+|+|.++|.+... ..++.+
T Consensus 251 i~~~~l~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 251 LEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK---SAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred EEEeCcccc--cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC---CccEEEECCEECCCCCHHHHHHCCC
Confidence 344455554 24699999999999999999999999999999999999876 37999999865432 235569
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHhh--h-cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHH
Q 005754 154 GFVTQDD---ILYPHLTVRETLVFCSL--L-RLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRV 226 (679)
Q Consensus 154 ~yv~Q~~---~l~~~lTV~E~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv 226 (679)
+|++|+. .+++.+|+.+|..+... . ......+....++.++++++.+++. +..++ .+.+|||||||||
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv 400 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGSLSGGNQQKV 400 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----ccccCCcHHHHHH
Confidence 9999985 47888998877433210 0 0001112233456678899999995 34444 4557999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||+. ++.++||++++|++|+++..++.
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999999999888999999999965 58899999999999999977755
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=342.98 Aligned_cols=196 Identities=29% Similarity=0.408 Sum_probs=162.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.+|+|+||+|++||+++|+|||||||||||++|+|+++| .+|+|.+++. ..+|||+|++.+++.+||.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p---~~G~i~~~~~-------~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE---FEGEARPAPG-------IKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEecCC-------CEEEEEecCCCCCCCCcHH
Confidence 46799999999999999999999999999999999999886 3789988642 4699999999999999999
Q ss_pred HHHHHHhh-hc------------CCCCCC--------------------HHHHHHHHHHHHHHcCCCccccccccCccCc
Q 005754 170 ETLVFCSL-LR------------LPRTLS--------------------TKEKTSIAEAVMAELGLTKCENTIIGNSFIR 216 (679)
Q Consensus 170 E~l~~~~~-~~------------~~~~~~--------------------~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 216 (679)
||+.+... .+ ...... ..+..++++++++.+||.. .+.. ++
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~-----~~ 162 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAK-----VT 162 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCc-----hh
Confidence 99987421 00 000000 0012456788999999953 4443 45
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||++||++. .+.++||++++|++|++
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRG 238 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEE
Confidence 799999999999999999999999999999999999999999999873 59999999965 58889999999999998
Q ss_pred E-EecChhhH
Q 005754 297 L-YFGKGSEA 305 (679)
Q Consensus 297 v-~~G~~~~~ 305 (679)
+ +.|+.++.
T Consensus 239 ~~~~g~~~~~ 248 (556)
T PRK11819 239 IPWEGNYSSW 248 (556)
T ss_pred EEecCCHHHH
Confidence 6 78877764
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=346.47 Aligned_cols=203 Identities=29% Similarity=0.437 Sum_probs=176.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c----ccCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H----ISKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~----~~~~i~yv~Q~~~l 162 (679)
+.+|+|+||++++||+++|+||||||||||+|+|+|+.+| .+|++.++|++... . .++.++|++|++.+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l 97 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP---TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHL 97 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCccc
Confidence 5699999999999999999999999999999999999886 47999999976532 1 14679999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+|+.||+.+..... .....+.++++.++++.+||.+..|+.. +.||||||||++|||+|+.+|++++||
T Consensus 98 ~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~-----~~LS~Gq~qrv~LAraL~~~P~lLllD 169 (648)
T PRK10535 98 LSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP-----SQLSGGQQQRVSIARALMNGGQVILAD 169 (648)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999998754321 1234556677899999999987666544 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.+++.+.+.|++++++|+|+|++||++. ..+.||++++|++|++++.|++++..
T Consensus 170 EP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 170 EPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999878999999999975 34679999999999999999998764
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=346.04 Aligned_cols=172 Identities=34% Similarity=0.550 Sum_probs=145.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc---ccccCcEEEEecCCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT---KHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~---~~~~~~i~yv~Q~~~l~~~lT 167 (679)
+++|+|+|+++++||.+||+||||||||||+|+|+|+++|+ +|+|.+||.+.. +.+++.++||+|++.+|+. |
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-T 423 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-T 423 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-c
Confidence 34899999999999999999999999999999999999874 799999997653 3567789999999999986 9
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
++|||.++. + ..+++ +++++++..++ ++..||.+|+ ....||||||||++|||||+++|++++
T Consensus 424 I~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~ili 493 (529)
T TIGR02868 424 VRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILL 493 (529)
T ss_pred HHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998752 1 12333 34445555444 4567899986 456799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
||||||+||+.+++.+.+.|+++. +++|+|+++|++
T Consensus 494 LDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 494 LDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999864 479999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=340.06 Aligned_cols=214 Identities=23% Similarity=0.384 Sum_probs=169.9
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKR 152 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~ 152 (679)
+...++++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|..++ ..+|+|.++|++... ..++.
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ--GYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc--ccCCeEEEecccCCCCCCHHHHHhh
Confidence 35566777778777899999999999999999999999999999999997643 137999999875321 23567
Q ss_pred EEEEecCCCCCC--CCCHHHHHHHHhhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHH
Q 005754 153 TGFVTQDDILYP--HLTVRETLVFCSLL--RLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVS 227 (679)
Q Consensus 153 i~yv~Q~~~l~~--~lTV~E~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ 227 (679)
++|++|++.++. ..|+++++.+.... ....... .+.+++++++++.+||.+ ..++.+ +.|||||||||+
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~ 411 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLAL 411 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHH
Confidence 999999876543 35777776543211 1111112 233456889999999986 555544 579999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCccHHHHH-hCCeEEEEeCCeEEEec
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSMHQPSSRVYQ-MFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~tH~~~~~i~~-~~D~v~lL~~G~iv~~G 300 (679)
||+||+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ ++|++++|++|++++.-
T Consensus 412 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 412 IVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999998775 57999999975 4666 58999999999988654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=376.23 Aligned_cols=199 Identities=24% Similarity=0.353 Sum_probs=169.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||.+||+||||||||||+++|.|+++| .+|+|.+||.+.. +.+|++++||||++.+|+.
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p---~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g- 1324 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL---EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG- 1324 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-
Confidence 4699999999999999999999999999999999999986 4799999998764 3578899999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.+.. ..++++ +.++++..++ .+..||.+|+ ....||||||||++|||||+++|+||
T Consensus 1325 TIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~IL 1393 (1495)
T PLN03232 1325 TVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKIL 1393 (1495)
T ss_pred cHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999997531 223333 4445555444 3456788875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+++.+.|.+.|++.. +++|+|+++|+++. ...||+|++|++|++++.|++++.++
T Consensus 1394 ILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1394 VLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999874 48999999999753 45699999999999999999998753
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=376.05 Aligned_cols=199 Identities=25% Similarity=0.365 Sum_probs=170.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|+|||.+||+|+||||||||+++|.|+++| .+|+|.+||.+.. +.+|+++++|||++.+|+.
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p---~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G- 1327 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL---ERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG- 1327 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCEecccCCHHHHHhccEEECCCCccccc-
Confidence 4699999999999999999999999999999999999986 4799999998764 3578899999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.+.. ..++++ +.++++..++ +...|+.+|+ ....||||||||++|||||+++|+||
T Consensus 1328 TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~IL 1396 (1622)
T PLN03130 1328 TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKIL 1396 (1622)
T ss_pred cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999997532 123333 3444444433 4567888875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||||++|++|++++.|+++++++
T Consensus 1397 ILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1397 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999875 48999999999764 4 5699999999999999999999864
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=341.03 Aligned_cols=202 Identities=22% Similarity=0.372 Sum_probs=169.2
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
.+..++++++|+++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|. +.+||++
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~-------~~i~~~~ 388 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN-------ANIGYYA 388 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc-------eEEEEEc
Confidence 345566777777778999999999999999999999999999999999998764 789998763 4699999
Q ss_pred cCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 158 QDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 158 Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|++. +++.+||.|++.+.. .. ...+++++++++.+|+. +..++. +..|||||||||+||++|+.
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred ccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCc-----ccccCHHHHHHHHHHHHHhc
Confidence 9863 566799999986421 01 11234578899999994 444444 55799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecChhhHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKGSEAM 306 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~ 306 (679)
+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+. .+.++||++++|++|+++ +.|++++..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999999999999999887 359999999965 588899999999999998 888877653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=340.83 Aligned_cols=198 Identities=28% Similarity=0.378 Sum_probs=161.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++++|+|+|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.+++ +..+|||+|++.+++.+||+
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~-------~~~i~~v~Q~~~~~~~~tv~ 86 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAP-------GIKVGYLPQEPQLDPTKTVR 86 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC-------CCEEEEEeccCCCCCCCcHH
Confidence 467999999999999999999999999999999999998863 78898875 24699999999999999999
Q ss_pred HHHHHHhhh-cC-----------CCCCCHH---------------------HHHHHHHHHHHHcCCCccccccccCccCc
Q 005754 170 ETLVFCSLL-RL-----------PRTLSTK---------------------EKTSIAEAVMAELGLTKCENTIIGNSFIR 216 (679)
Q Consensus 170 E~l~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 216 (679)
||+.++... +. ......+ +...+++++++.+|+.. .++ .++
T Consensus 87 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~-----~~~ 160 (552)
T TIGR03719 87 ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDA-----DVT 160 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccC-----chh
Confidence 999874311 00 0000010 01245667788888853 343 455
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
.|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++. .+..+||++++|++|++
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRG 236 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEE
Confidence 79999999999999999999999999999999999999999999876 359999999965 58889999999999997
Q ss_pred E-EecChhhHHH
Q 005754 297 L-YFGKGSEAMS 307 (679)
Q Consensus 297 v-~~G~~~~~~~ 307 (679)
+ +.|+.++..+
T Consensus 237 ~~~~g~~~~~~~ 248 (552)
T TIGR03719 237 IPWEGNYSSWLE 248 (552)
T ss_pred EEecCCHHHHHH
Confidence 6 7788876544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=289.25 Aligned_cols=214 Identities=27% Similarity=0.409 Sum_probs=182.7
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC-CCccc-----cccCcEEE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTK-----HISKRTGF 155 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g-~~~~~-----~~~~~i~y 155 (679)
++++..+++-.+|+|+||++.+||+-+|+|||||||||+|++|+|..+| ..|+++++| .+... ..+..||-
T Consensus 9 ~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~f~g~~dl~~~~e~~IAr~GIGR 85 (249)
T COG4674 9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKLPEHRIARAGIGR 85 (249)
T ss_pred eceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC---CcceEEEcCchhhccCCHHHHHHhccCc
Confidence 3444455677899999999999999999999999999999999998876 479999998 44322 24568999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPR-----TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
-||.|..|+.+||+|||..+.....+- .....+.+++++++|...||.+.++...+ .||.||||++.|+.
T Consensus 86 KFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~LSHGqKQwLEIGM 160 (249)
T COG4674 86 KFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LLSHGQKQWLEIGM 160 (249)
T ss_pred cccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hhccchhhhhhhhe
Confidence 999999999999999999865422110 01234456789999999999998887665 59999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
-++.+|++|+||||++|+-.+...+.-++|++++. +.+|+++.||+ ..+.+++|+|.+|++|.+...|+.+++
T Consensus 161 ll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 161 LLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred eeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhhheeEEEeccceeecccHHHh
Confidence 99999999999999999999999999999999986 58999999995 569999999999999999999998876
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=301.46 Aligned_cols=209 Identities=27% Similarity=0.397 Sum_probs=181.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEe-cCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVT-QDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~-Q~~~l~~~ 165 (679)
...+++|+||+|++|++++++|||||||||+||+|+|++.| .+|.|.++|..+-. +.-+.+++|+ |...+...
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p---~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd 112 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP---TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD 112 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc---CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee
Confidence 34589999999999999999999999999999999999987 47999999987643 3456788875 55667777
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+.+.|.+......+ ..+.++-.++.+.+.+.|+|+...+.+ +|.||-|||.|+.||.+|+++|+||||||||
T Consensus 113 lp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 113 LPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred chhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 77888877644433 467788889999999999999766654 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 246 SGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
-|||..++.++.+.|++..+ ++.||+.+||+.. .+.++||||++|+.|+++|+|+.++..+-|.
T Consensus 185 vgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999999975 5999999999965 5999999999999999999999999887663
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=342.39 Aligned_cols=184 Identities=31% Similarity=0.521 Sum_probs=155.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|+++|+ +|+|.+||.+.. +.+++.++||+|++.+|+.
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~- 410 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG- 410 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-
Confidence 46899999999999999999999999999999999999874 799999998753 3567889999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++||+.++. + ..++ +.++++++..++. +..||.+|+ ....||||||||++|||||+++|+++
T Consensus 411 ti~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~il 480 (529)
T TIGR02857 411 TIAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLL 480 (529)
T ss_pred CHHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 1222 2344555555543 346788875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+||||||+||+.+++.+.+.|+++. +++|+|+++|+++ ..+.||+|++|
T Consensus 481 ilDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 481 LLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred EEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 9999999999999999999999885 5899999999974 45789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=338.65 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=157.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|.++| .+|+|.+||.+... .+++.++||+|++.+|+.
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~- 411 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP---QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ- 411 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-
Confidence 3589999999999999999999999999999999999986 47999999987542 467889999999988875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc--cCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS--FIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
|++|| . . ...++.+++.++.+++.+..+ .++. ....||||||||++|||||+++|++|+||||
T Consensus 412 ti~~n---~------~----~~~~~~~~~~~~~~~l~~~~~--~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 412 LLGPE---G------K----PANPALVEKWLERLKMAHKLE--LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred hhccc---c------C----chHHHHHHHHHHHcCCchhhh--ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 77776 1 0 112345678888888876433 2221 1357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~ 299 (679)
||+||+.+++.+.+.|.++.+ .|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 477 ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999987654 5899999999974 5678999999999999866
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=306.11 Aligned_cols=212 Identities=29% Similarity=0.417 Sum_probs=183.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--CeeeEEEECCCCccc----ccc----CcEEEEecC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--GLTGTILTNNNKPTK----HIS----KRTGFVTQD 159 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~~~G~i~~~g~~~~~----~~~----~~i~yv~Q~ 159 (679)
...++++|||++++||.+||+|.||||||-..+.+.|+++... ..+|+|.++|.+.-. .++ .+|+++||+
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 5779999999999999999999999999999999999986422 357899999987521 222 379999999
Q ss_pred C--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 160 D--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 160 ~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
+ .|-|-.|+...+.-...+ ....++++.++++.++|+.+|+.+-.... +.++++|||||||||.||.||+++|+
T Consensus 102 PMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~ 177 (534)
T COG4172 102 PMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPD 177 (534)
T ss_pred cccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCC
Confidence 8 467778888877655443 34567888899999999999998765432 57899999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+||.||||++||...+.+|+++|++|.++ |..++++|||.. -+.+++|||.+|.+|++++.|+.+++.
T Consensus 178 lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred eEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 99999999999999999999999999865 999999999976 488999999999999999999988765
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=319.81 Aligned_cols=205 Identities=30% Similarity=0.505 Sum_probs=174.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
+|++|+||||++.||+.+||+||||+||||++++|...... .+|.|.+||+++.. .+|+.||.||||..+|.+
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv---~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd 626 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV---NSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND 626 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc---cCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc
Confidence 47899999999999999999999999999999999998763 48999999998743 578899999999999976
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHH--HHH-HHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAE--AVM-AELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~--~~l-~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
|+..|+.|+. | ..++++..+.++ .+= +.++..+..+|++|++.. .|||||||||+|||+++++|.+++||
T Consensus 627 -TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL-kLSGGEKQRVAiARtiLK~P~iIlLD 699 (790)
T KOG0056|consen 627 -TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL-KLSGGEKQRVAIARTILKAPSIILLD 699 (790)
T ss_pred -eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc-ccCCcchhhHHHHHHHhcCCcEEEEc
Confidence 9999998863 2 223444333222 221 346889999999997654 49999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|.||+||..+.++|...|.++++ |+|-|++.|..+. + -.+|.|+++++|+|++.|..+|.+.
T Consensus 700 EATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 700 EATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred chhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEEEEeCCeEeecCcHHHHHh
Confidence 99999999999999999999987 7888899999875 3 4699999999999999999988754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=365.04 Aligned_cols=197 Identities=26% Similarity=0.434 Sum_probs=159.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC-CCCcc----ccccCcEEEEecCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN-NNKPT----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~-g~~~~----~~~~~~i~yv~Q~~~l~~~ 165 (679)
+++|+|+|++|++||++||+||||||||||+++|+|+++|+ +|+|.++ |.+.. ..+|+.+|||+|++.+|+.
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~ 474 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN 474 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc
Confidence 46999999999999999999999999999999999999874 7999995 55442 2457789999999999975
Q ss_pred CCHHHHHHHHhhh-cC---------CC-----------------------------CC---------CHHHHHHHHHHHH
Q 005754 166 LTVRETLVFCSLL-RL---------PR-----------------------------TL---------STKEKTSIAEAVM 197 (679)
Q Consensus 166 lTV~E~l~~~~~~-~~---------~~-----------------------------~~---------~~~~~~~~v~~~l 197 (679)
||+||+.++... +. +. .. .....++.+.+++
T Consensus 475 -TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~ 553 (1466)
T PTZ00265 475 -SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553 (1466)
T ss_pred -cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHH
Confidence 999999986310 00 00 00 0001124466666
Q ss_pred HHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcE
Q 005754 198 AELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKT 269 (679)
Q Consensus 198 ~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~t 269 (679)
+.+++ .+..||.+|. .+..||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++++ +|+|
T Consensus 554 ~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~T 632 (1466)
T PTZ00265 554 KKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRI 632 (1466)
T ss_pred HHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCE
Confidence 66655 4455777875 4778999999999999999999999999999999999999999999999976 5899
Q ss_pred EEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 270 IVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 270 ii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
+|+++|+++. + +.||+|++|++|
T Consensus 633 vIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 633 TIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred EEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 9999999753 4 789999999986
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=368.20 Aligned_cols=199 Identities=23% Similarity=0.353 Sum_probs=170.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+||||+|++||.+||+|+||||||||+++|.|+++| .+|+|.+||.+.. +.+|+.++||||++.+|+.
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p---~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g- 1398 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV---CGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG- 1398 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEcccCCHHHHHhcceEECCCCccccc-
Confidence 4599999999999999999999999999999999999986 3799999998764 3578899999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhC-CCe
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLIN-PSL 238 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~-P~l 238 (679)
|++|||... ...+. +.+.++++..++. +..|+.+|+ ....||||||||++|||||+++ |+|
T Consensus 1399 TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~I 1467 (1560)
T PTZ00243 1399 TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGF 1467 (1560)
T ss_pred cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCE
Confidence 999999532 12233 3455666666654 356888875 4567999999999999999996 899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||+||+++...|.+.|++.. +++|||+++|+++ ....||+|++|++|++++.|+++++++
T Consensus 1468 LlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1468 ILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999864 4799999999975 457799999999999999999998753
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=369.23 Aligned_cols=199 Identities=24% Similarity=0.310 Sum_probs=169.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|||++|+|||.+||+|+||||||||+++|.|+++| .+|+|.+||.+..+ .+|+++++|||++.+|+.
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~---~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g- 1374 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES---AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG- 1374 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC---CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-
Confidence 3599999999999999999999999999999999999986 47999999988643 578899999999999987
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.... ..++++ +.++++..++. +..|+.+|+ ....||||||||++|||||+++|+||
T Consensus 1375 TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~IL 1443 (1522)
T TIGR00957 1375 SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKIL 1443 (1522)
T ss_pred cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999996211 123333 44555555543 456888875 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+++...+.+.|++.. +++|||+++|+++. ...+|||++|++|++++.|++++.++
T Consensus 1444 iLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1444 VLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 47999999999753 56799999999999999999998764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=335.77 Aligned_cols=191 Identities=21% Similarity=0.271 Sum_probs=157.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||.++|+||||||||||+|+|+|.++| .+|+|.+||.+... .+++.++||+|++.+|+.
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 430 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP---QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD- 430 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-
Confidence 4699999999999999999999999999999999999986 47999999987542 457789999999998875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc-ccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI-IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
|++||.. + ...++.++++++.+++.+..+.. -|......||||||||++|||||+.+|++++|||||
T Consensus 431 ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~t 498 (555)
T TIGR01194 431 LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWA 498 (555)
T ss_pred hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 7888731 1 12234567788999887643321 121223569999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH-HHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe
Q 005754 246 SGLDSTAAYRLVSTLG-SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~-~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~ 299 (679)
++||+.+++.+.+.+. ++..+|+|+|+++|+++ ..+.||+|++|++|+++..
T Consensus 499 s~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 499 ADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999998764 56567899999999974 4678999999999999754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=304.93 Aligned_cols=198 Identities=22% Similarity=0.319 Sum_probs=162.1
Q ss_pred Ccccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCCCccc---
Q 005754 83 GSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-----------TNNNKPTK--- 147 (679)
Q Consensus 83 ~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~-----------~~g~~~~~--- 147 (679)
+++++|+++ .+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|+|. ++|.+...
T Consensus 5 ~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 5 EPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred CcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchhhhhhH
Confidence 456677665 5999999 59999999999999999999999999999874 78885 66765422
Q ss_pred ccc---CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHH
Q 005754 148 HIS---KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 148 ~~~---~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 224 (679)
..+ ..++|++|+..+++. ++.+++.+.. .....++.++++++.+||.+..+. .++.|||||||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LS~G~~q 146 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDR-----NIDQLSGGELQ 146 (255)
T ss_pred HhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHH
Confidence 111 247899999888874 8888887632 122334567899999999875554 34579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 225 RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 225 Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+ |++.+.|
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999999999999888999999999965 5777999999994 6666544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=297.75 Aligned_cols=173 Identities=28% Similarity=0.455 Sum_probs=154.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
..+++||||+|++||.++|+|+||||||||-|+|.|+.+| ++|+|.++|++.....
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~--------------------- 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLS--------------------- 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcc---------------------
Confidence 5799999999999999999999999999999999999987 4899999998742211
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
+.+..+++.++|+.+||... ..++++++||||||||++|||||+.+|+++++|||+|+||.
T Consensus 82 ---------------~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 82 ---------------KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred ---------------hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 34566789999999998652 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 251 TAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
..+.+++++|+++.++ |.|.++++||.+ .+..++||+.+|..|+++..|+.+++..
T Consensus 143 SiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 143 SVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999875 999999999975 5889999999999999999999988743
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=333.47 Aligned_cols=202 Identities=23% Similarity=0.371 Sum_probs=164.4
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
++..+++++.|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.+++. ..+||++
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~-------~~i~~v~ 393 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET-------VKLAYVD 393 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc-------eEEEEEe
Confidence 345566666777778999999999999999999999999999999999998764 789988432 2599999
Q ss_pred cCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 158 QDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 158 Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
|+. .+++.+||.||+.+...... .... ...++++++.+|+.+ ..+.. +.+|||||||||+||++|+.+
T Consensus 394 q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~ 463 (556)
T PRK11819 394 QSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGERNRLHLAKTLKQG 463 (556)
T ss_pred CchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhcC
Confidence 996 78889999999987542211 1111 123456899999963 34443 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-CeEE-EecChh
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCL-YFGKGS 303 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-G~iv-~~G~~~ 303 (679)
|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.++||++++|++ |++. +.|+.+
T Consensus 464 p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 464 GNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHH
Confidence 99999999999999999999999999873 4 8999999965 58899999999986 7876 456544
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=333.71 Aligned_cols=196 Identities=23% Similarity=0.323 Sum_probs=165.7
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEec
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q 158 (679)
...++++++|++. .|+++|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++ ..++|++|
T Consensus 341 l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~---------~~i~y~~Q 407 (590)
T PRK13409 341 VEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE---------LKISYKPQ 407 (590)
T ss_pred EEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe---------eeEEEecc
Confidence 4556666677654 599999999999999999999999999999999998864 7888875 25999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+..+.+.+||+|++.+.... ... ...++++++.++|.+..++. +..|||||||||+||++|+.+|++
T Consensus 408 ~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 408 YIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred cccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 98888899999999875211 111 12467899999998766554 457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..++||+++|+ |++...|..
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeeec
Confidence 9999999999999999999999999874 899999999965 5788999999996 588777753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=331.30 Aligned_cols=202 Identities=23% Similarity=0.376 Sum_probs=164.6
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
++..+++++.|+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+| .+|+|.+++. ..+||++
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p---~~G~i~~~~~-------~~i~~v~ 391 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP---DSGTIKIGET-------VKLAYVD 391 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCeEEEECCc-------eEEEEEe
Confidence 34556667777777899999999999999999999999999999999999876 3789988432 2599999
Q ss_pred cCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 158 QDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 158 Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
|++ .+++.+||.|++.+...... .... ..+++++++.+|+.+ ..+.. +..|||||||||+||++|+.+
T Consensus 392 q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~la~al~~~ 461 (552)
T TIGR03719 392 QSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVHLAKTLKSG 461 (552)
T ss_pred CCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHHHHHHHhhC
Confidence 996 47888999999987642211 1111 123557899999964 34443 457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC-CeEE-EecChh
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE-GRCL-YFGKGS 303 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~-G~iv-~~G~~~ 303 (679)
|++|||||||+|||+.++..+.+.|+++. + |||++|||+. .+.++||++++|++ |++. +.|+.+
T Consensus 462 p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 462 GNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 99999999999999999999999999883 3 8999999965 58889999999986 5876 556554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=360.91 Aligned_cols=198 Identities=23% Similarity=0.304 Sum_probs=169.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+|||++|++||.+||+|+||||||||+++|.|+++ .+|+|.+||.+... .+|++++||||++.+|+.
T Consensus 1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G- 1306 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG- 1306 (1490)
T ss_pred cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-
Confidence 569999999999999999999999999999999999975 37999999987642 578899999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.... ..+ ++.+.++++..+|. +..|+.+++ ....||||||||++|||||+++|+||
T Consensus 1307 TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1307 TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999995321 122 23456667776663 456788875 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.+...|.+.|++.. +++|||+++|+++ ....||+|++|++|+++..|+++++++
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999874 4799999999975 356699999999999999999998753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=333.86 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=167.7
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
.+..+++++.|+++.+|+|+|++|++||+++|+||||||||||||+|+|..+|+ +|+|.+++. ..+||++
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~-------~~igy~~ 381 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG-------IKLGYFA 381 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC-------EEEEEec
Confidence 455667778888888999999999999999999999999999999999998764 788988632 2599999
Q ss_pred cCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 158 QDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 158 Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|+. .+.+..|+.+++.- .. .....+.++++|+.+++.. ..++++ +.|||||||||+||++|+.
T Consensus 382 Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 382 QHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred CcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHHHHHhc
Confidence 974 35566788777531 11 1123456788999999963 455444 4699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecChhhHHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKGSEAMS 307 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 307 (679)
+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+.++||++++|++|+++ +.|+.++..+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999987 34 9999999964 588899999999999997 8898887644
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=280.73 Aligned_cols=153 Identities=26% Similarity=0.391 Sum_probs=134.7
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~ 161 (679)
.+++++|+++.+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|. .++|++|+..
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~--------~i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGI--------TPVYKPQYID 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCE--------EEEEEcccCC
Confidence 3567788888899985 899999999999999999999999999999864 799999874 2788888532
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
||||||||++|||+|+.+|++++|
T Consensus 72 --------------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 72 --------------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 899999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe--cChh
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF--GKGS 303 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~--G~~~ 303 (679)
||||+|||+.++..+.+.|+++++++ .|||++||++. .+.++||++++|+++..++. |+|.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999999999999998765 99999999964 57789999999998766654 5554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=346.24 Aligned_cols=222 Identities=28% Similarity=0.448 Sum_probs=201.3
Q ss_pred CccCCCCccccccccc-eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----ccc
Q 005754 77 SSTDDQGSTAKIQERT-ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HIS 150 (679)
Q Consensus 77 ~~~~~~~~~~~~~~~~-iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~ 150 (679)
......++++.|+.+. +++++|+.|++||+.+++|||||||||++|+|.|..+| .+|+++++|.+... ..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~---t~G~a~i~g~~i~~~~~~~~~~ 639 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP---TSGEALIKGHDITVSTDFQQVR 639 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccC---CcceEEEecCccccccchhhhh
Confidence 3455677788888777 99999999999999999999999999999999999886 47899999887643 257
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH 230 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~ 230 (679)
+.+||+||+|.+++.+|.+|++.+.++++ ..+..+..+.++.+++.+||.+.+|+.++ .+|||+|||+++|.
T Consensus 640 ~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 640 KQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAI 711 (885)
T ss_pred hhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHH
Confidence 78999999999999999999999999886 45567777889999999999999888765 59999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 231 EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
||+.+|++++|||||+|+||.+++.+.++++++.+.|+.||+|||.. +|...+|||+.+|.+|++...|++++....|.
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 99999999999999999999999999999999999888999999995 57999999999999999999999999998875
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=270.18 Aligned_cols=138 Identities=31% Similarity=0.547 Sum_probs=125.3
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+++|+++.+|+++|+++++||+++|+||||||||||+++|+|+.+| .+|+|.++|. +.++|++|
T Consensus 7 ~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~-------~~i~~~~~------ 70 (144)
T cd03221 7 SKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST-------VKIGYFEQ------ 70 (144)
T ss_pred EEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe-------EEEEEEcc------
Confidence 3444455799999999999999999999999999999999999876 4799999883 46899998
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
||+|||||++|||+|+.+|++++||||
T Consensus 71 -----------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 71 -----------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|+|||+.++..+.+.|+++ ++||+++||++. ++.+++|++++|++|+
T Consensus 98 ~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 98 TNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999987 479999999965 5778999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=275.31 Aligned_cols=160 Identities=25% Similarity=0.345 Sum_probs=132.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
.+++|+|+|+++++|++++|+||||||||||||+|.+ .+|++.+++... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~-~~~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLP-KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCccc-ccccccEEEEhH-----------
Confidence 4679999999999999999999999999999999963 267888877632 222345788877
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhC--CCeEEEeCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLIN--PSLLILDEPTS 246 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~--P~lllLDEPts 246 (679)
.+.++.++|... .+. .++.||||||||++||++|+.+ |+++||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 135677787642 333 4567999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF 299 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~ 299 (679)
|||+.++..+.+.|++++++|+|||++||++. .+ +.+|++++|.+|+..+.
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSG 169 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCC
Confidence 99999999999999999878999999999975 34 68999999976554333
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=276.57 Aligned_cols=203 Identities=29% Similarity=0.421 Sum_probs=168.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc----ccCcEEEEecCC--CC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH----ISKRTGFVTQDD--IL 162 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~----~~~~i~yv~Q~~--~l 162 (679)
..+++|+++|++|.+|+++.|+|.||||||||+|+|+|.+.|+ +|+|.++|.+.++. ....++-|+||+ ..
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt 93 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT 93 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceecccCCHHHHhhHHHHHhcchhhCC
Confidence 3578999999999999999999999999999999999998864 79999999887542 223578899997 46
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCH---HHHHHHHHHHHHH--cCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLST---KEKTSIAEAVMAE--LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
++.||++||+..+......+..+. ...++...+-++. +||++..++++| -|||||||-++++.|-++.|+
T Consensus 94 ~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pk 168 (263)
T COG1101 94 APELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPK 168 (263)
T ss_pred cccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCc
Confidence 999999999998654322222222 2233333444555 466787888777 499999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||+|||=|++|||.+++.+++.=.++.++ +.|.+++||... +...+-+|.++|++|+|+.+-
T Consensus 169 iLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 169 ILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 99999999999999999999999998764 789999999965 588999999999999999764
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=328.40 Aligned_cols=203 Identities=25% Similarity=0.372 Sum_probs=166.9
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
++..+++++.|+++++|+|+|++|++|++++|+||||||||||||+|+|+.+|+ +|+|.+ |.. -.+||++
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~------~~i~y~~ 388 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK------LEVAYFD 388 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC------cEEEEEe
Confidence 456677888888888999999999999999999999999999999999998764 788888 432 2599999
Q ss_pred cCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 158 QDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 158 Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
|+. .+++.+||.||+.+..... ... .....+.++++.+++. +..++++ +.|||||||||+||++|+.+
T Consensus 389 q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 389 QHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLARLFLKP 458 (635)
T ss_pred CcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcC
Confidence 985 5889999999998743210 011 1234577889999985 3445444 57999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe-CCeEEE-ecChhh
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS-EGRCLY-FGKGSE 304 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~-~G~iv~-~G~~~~ 304 (679)
|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+..+||++++|+ +|++.. .|+-++
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 9999999999999999999999999876 459999999954 5788999999998 799864 566554
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=327.78 Aligned_cols=203 Identities=24% Similarity=0.341 Sum_probs=157.7
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l 162 (679)
+++++|+++.+|+||||+|++|++++|+||||||||||||+|+|..+|+ +|+|.++|.. .++|++|+...
T Consensus 6 nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~~-------~i~~~~q~~~~ 75 (638)
T PRK10636 6 SLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGNW-------QLAWVNQETPA 75 (638)
T ss_pred EEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCCC-------EEEEEecCCCC
Confidence 3445566778999999999999999999999999999999999988764 7999988742 37899986533
Q ss_pred CCCCCHHHHHHHHhh-----------------------hcC-CCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcc
Q 005754 163 YPHLTVRETLVFCSL-----------------------LRL-PRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRG 217 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 217 (679)
+ ..|+.+++.-... +.. .......+...+++++++.+|+. +..+.++ ..
T Consensus 76 ~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~-----~~ 149 (638)
T PRK10636 76 L-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPV-----SD 149 (638)
T ss_pred C-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCch-----hh
Confidence 3 2466554431100 000 00000112345788999999996 4555554 46
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+.++||++++|++|++.
T Consensus 150 LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 150 FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999998875 569999999964 588899999999999996
Q ss_pred -EecChhhH
Q 005754 298 -YFGKGSEA 305 (679)
Q Consensus 298 -~~G~~~~~ 305 (679)
|.|+.+..
T Consensus 226 ~~~g~~~~~ 234 (638)
T PRK10636 226 EYTGNYSSF 234 (638)
T ss_pred EecCCHHHH
Confidence 66766543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=351.35 Aligned_cols=191 Identities=27% Similarity=0.411 Sum_probs=158.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+|+++++||.++|+||||||||||+++|.|.++|. +|.+. ..++.++||+|++.+++. |++|
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~--------~~~~~Iayv~Q~p~Lf~g-TIre 697 (1495)
T PLN03232 630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSV--------VIRGSVAYVPQVSWIFNA-TVRE 697 (1495)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEE--------EecCcEEEEcCccccccc-cHHH
Confidence 46899999999999999999999999999999999999874 33331 346789999999999975 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
||.|+.. .+++ +.+++++..+ |.+..+|.+|++ ...||||||||++||||++++|+|+||||
T Consensus 698 NI~fg~~------~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDE 766 (1495)
T PLN03232 698 NILFGSD------FESE----RYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDD 766 (1495)
T ss_pred HhhcCCc------cCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9998631 2222 3344444443 345567889875 55799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVST-LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~-L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||+||+.+++++++. ++.+ .+|+|+|++||+++ ....+|+|++|++|++++.|+.++..+
T Consensus 767 ptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 767 PLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999988765 4443 35899999999975 467899999999999999999988753
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=276.65 Aligned_cols=206 Identities=26% Similarity=0.359 Sum_probs=180.7
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~l 166 (679)
+.....+|+||||++++||.++|+|+||||||||||+|+|.++|+ +|+|.++|+... -+.-..| +-|.+
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~v~~-li~lg~G-------f~pel 104 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKVAP-LIELGAG-------FDPEL 104 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcceEeh-hhhcccC-------CCccc
Confidence 345678999999999999999999999999999999999999974 789999886421 1111222 34679
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
|.+||+.+...+. .+++++.+++++++++.-+|.+..|.++. .+|.||+-|++.|.+...+|++||+||-.+
T Consensus 105 TGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pvk-----tYSSGM~aRLaFsia~~~~pdILllDEvla 176 (249)
T COG1134 105 TGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPVK-----TYSSGMYARLAFSVATHVEPDILLLDEVLA 176 (249)
T ss_pred chHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCchh-----hccHHHHHHHHHhhhhhcCCCEEEEehhhh
Confidence 9999999866542 45788999999999999999998887765 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHc
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~ 312 (679)
--|+.=++.-.+.++++.++++|||+++|++. .+.++|||+++|++|++.+.|+++++.++|++.
T Consensus 177 vGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 177 VGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 99999999999999999888999999999965 699999999999999999999999999988653
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=260.35 Aligned_cols=183 Identities=30% Similarity=0.490 Sum_probs=160.7
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYP 164 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~ 164 (679)
+.++...|.|+|++|.+||++-|||||||||||||..+.|.+.+.-..+|++++|++..+. ..+|++|..+||+.+||
T Consensus 11 ~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp 90 (213)
T COG4136 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP 90 (213)
T ss_pred cCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence 4456789999999999999999999999999999999999988766689999999987653 56789999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.++|.+|+.|+. |...+.+.+++.++..|++.||....+ +.+.+||||||-||++-|+|+..|+.++||||
T Consensus 91 hlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~-----~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP 161 (213)
T COG4136 91 HLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFH-----QDPATLSGGQRARVALLRALLAQPKALLLDEP 161 (213)
T ss_pred ccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhh-----cChhhcCcchHHHHHHHHHHHhCcceeeeCCc
Confidence 999999998853 455555677778899999999988665 34678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCCcc
Q 005754 245 TSGLDSTAAYRLVSTLGS-LVQRGKTIVTSMHQPS 278 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~-l~~~g~tii~~tH~~~ 278 (679)
+|.||..-+.++.+..-. +...|..+|.+|||..
T Consensus 162 FS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 162 FSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999988754 4556999999999954
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=300.40 Aligned_cols=203 Identities=31% Similarity=0.491 Sum_probs=173.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~ 165 (679)
.+++|+++|+.+++|+.+|++||||+||||++++|...+.+ .+|.|.++|++.. +.+|+-||.||||..||.+
T Consensus 275 ~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~---~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV---NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC---cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence 47899999999999999999999999999999999999875 4899999998863 3578889999999999875
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIA-----EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
|...|+.|+.. ..+.++..+.+ .+.++ .+.+..++.||.+.. .|||||||||+|||+++++|+||+
T Consensus 352 -ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgergl-klSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 352 -TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGL-KLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred -hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhee-eccCchHHHHHHHHHHhcCCCEEE
Confidence 99999988631 23444443332 22333 457788999997654 499999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||.||+||..+.+++...|++++ .|+|.+++.|..+. + --+|+|++|++|+|++.|+.++++.
T Consensus 423 ~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 423 LDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 999999999999999999999987 58999999999875 3 4699999999999999999998765
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=324.16 Aligned_cols=203 Identities=22% Similarity=0.375 Sum_probs=160.3
Q ss_pred cCCCCcccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 79 TDDQGSTAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 79 ~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
+..+++++.|+ ++.+|+|+||+|++|++++|+||||||||||||+|+|+++|+ +|+|.+++ +.++||++
T Consensus 509 L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~-------~~~igyv~ 578 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSA-------KVRMAVFS 578 (718)
T ss_pred EEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECC-------ceeEEEEe
Confidence 34455566664 356999999999999999999999999999999999998864 68888764 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
|+. .+.+++.++.........+. .. .+.++++++.+|+.+ ..+. .+..|||||||||+||++|+.+|
T Consensus 579 Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaLAraL~~~p 646 (718)
T PLN03073 579 QHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKP 646 (718)
T ss_pred ccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHHHHHHhcCC
Confidence 985 34566666643321111111 11 245778999999973 3343 45679999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecChhhHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKGSEAMS 307 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 307 (679)
++|||||||+|||+.++..+++.|++. .| |||++|||+. .+..+||++++|++|+++ +.|+.++..+
T Consensus 647 ~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 647 HILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999999999999998888765 34 9999999965 588899999999999998 7787776443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=349.21 Aligned_cols=190 Identities=27% Similarity=0.425 Sum_probs=159.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCee-eEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~-G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
+++|+|+|+++++||.++|+||||||||||+++|.|.+++. + |+|.+ ++.++||+|++.+++. |++
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l---------~~~Iayv~Q~p~Lfng-TIr 696 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVI---------RGTVAYVPQVSWIFNA-TVR 696 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEE---------cCeEEEEcCccccCCC-CHH
Confidence 46899999999999999999999999999999999999864 5 77764 5579999999999875 999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
|||.|+.. .+ +++.+++++..+| .+..+|.+|++ ...||||||||++||||+.++|+|+|||
T Consensus 697 eNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLD 765 (1622)
T PLN03130 697 DNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFD 765 (1622)
T ss_pred HHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEEC
Confidence 99998632 12 2334455554444 44567889865 5579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 243 EPTSGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~-~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||+||+++++++++ .++.+. +|+|+|++||++. ....+|+|++|++|++++.|+.++..+
T Consensus 766 EptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 766 DPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999998865 555553 5899999999974 578899999999999999999988753
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=326.20 Aligned_cols=185 Identities=21% Similarity=0.314 Sum_probs=149.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+++++ +|++.+++ ++.++||+|++.+++. |++|
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~e 533 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA-------KGKLFYVPQRPYMTLG-TLRD 533 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC-------CCcEEEECCCCCCCCc-CHHH
Confidence 46999999999999999999999999999999999998763 57887753 4579999999998887 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG----NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
|+.++....... .....++.++++++.+++.+..+++.| ....+.||||||||++|||+|+++|+++||||||+
T Consensus 534 ni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 534 QIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 998753211000 000113456788999999765543221 11346899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|||+.+++.+.+.+++ .|+|+|+++|+++ ..+.+|++++|+.
T Consensus 612 ~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 612 AVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 9999999999998876 3899999999975 3588999999973
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=321.34 Aligned_cols=199 Identities=23% Similarity=0.346 Sum_probs=153.7
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
++.|+++.+|+||||+|++|++++|+||||||||||||+|+|..+|+ +|+|.++|.. .++|++|.+....
T Consensus 10 s~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~~-------~~~~l~q~~~~~~ 79 (635)
T PRK11147 10 WLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDL-------IVARLQQDPPRNV 79 (635)
T ss_pred EEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCCC-------EEEEeccCCCCCC
Confidence 33445567999999999999999999999999999999999998764 7999987632 2577777653333
Q ss_pred CCCHHHHHHHH------------------------------hhhc--CCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005754 165 HLTVRETLVFC------------------------------SLLR--LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN 212 (679)
Q Consensus 165 ~lTV~E~l~~~------------------------------~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 212 (679)
..+|.+++..+ ..+. .. .....+...+++++++.+|+.. +
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~--~----- 151 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLGLDP--D----- 151 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCCCCC--C-----
Confidence 34565553210 0000 00 0000123456888999999963 3
Q ss_pred ccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 213 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+.+..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++. .|||++|||+. .+.++||++++|+
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~-~l~~~~d~i~~L~ 227 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRS-FIRNMATRIVDLD 227 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHH-HHHHhcCeEEEEE
Confidence 3455799999999999999999999999999999999999999999999873 59999999964 5788999999999
Q ss_pred CCeEE-EecChhhH
Q 005754 293 EGRCL-YFGKGSEA 305 (679)
Q Consensus 293 ~G~iv-~~G~~~~~ 305 (679)
+|+++ |.|+.++.
T Consensus 228 ~G~i~~~~g~~~~~ 241 (635)
T PRK11147 228 RGKLVSYPGNYDQY 241 (635)
T ss_pred CCEEEEecCCHHHH
Confidence 99997 56776653
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=264.78 Aligned_cols=184 Identities=26% Similarity=0.418 Sum_probs=160.9
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc---ccCcEEEEec
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH---ISKRTGFVTQ 158 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~---~~~~i~yv~Q 158 (679)
++++-..+.+.++.++||++.+||++-|.|||||||||||++|+|+..|+ +|+|.++|..+... .++.+-|+-.
T Consensus 6 ~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~~~~~~~l~yLGH 82 (209)
T COG4133 6 ENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGH 82 (209)
T ss_pred hhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccchhhHHHHHHHhhc
Confidence 44555567789999999999999999999999999999999999999874 79999998876542 3467788888
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
.+.+=+.|||.|||.|...+... ...+.+.+.++.+||....|.+++ .||-||||||+|||-+++.+++
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCc
Confidence 88888999999999997665422 123457888999999998888876 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 152 WiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 152 WILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred eeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999999999999999999999999999864
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=318.55 Aligned_cols=190 Identities=26% Similarity=0.346 Sum_probs=157.7
Q ss_pred CCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEE-----------ECCCCcccc-
Q 005754 82 QGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-----------TNNNKPTKH- 148 (679)
Q Consensus 82 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~-----------~~g~~~~~~- 148 (679)
..++++|+.+ .+|++++ .+++||+++|+||||||||||||+|+|+++|+ .|+|. ++|.+....
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHHHHHH
Confidence 4478889875 5999999 99999999999999999999999999999874 68886 788764321
Q ss_pred -----ccCcEEEEecCCCCCCC---CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH
Q 005754 149 -----ISKRTGFVTQDDILYPH---LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG 220 (679)
Q Consensus 149 -----~~~~i~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 220 (679)
.+.++++.+|.....|. .||+|++... +.+++++++++.+||.+..|+.++ .|||
T Consensus 153 ~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSg 215 (590)
T PRK13409 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSG 215 (590)
T ss_pred HHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 12345666665443333 3999998631 233568899999999887666554 6999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 221 GerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|.++
T Consensus 216 Ge~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 216 GELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999988 999999999965 588999999999864
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=259.92 Aligned_cols=216 Identities=26% Similarity=0.411 Sum_probs=172.1
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC---CCcc-----c--
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN---NKPT-----K-- 147 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g---~~~~-----~-- 147 (679)
..+..+++|.|+...-.+||||++.|||+++|+|.|||||||||++|++++.|+ .|+|.+.. ++.. +
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhhchHH
Confidence 456778899999999999999999999999999999999999999999999875 56676643 2211 1
Q ss_pred ---cccCcEEEEecCCC--CCCCC----CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCccc
Q 005754 148 ---HISKRTGFVTQDDI--LYPHL----TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218 (679)
Q Consensus 148 ---~~~~~i~yv~Q~~~--l~~~l----TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 218 (679)
.+|..-|+|.|++. +-... .+.|-++-.. .......++.+.++|+++.++.. .+ +..++.+
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G------~RHYG~iR~~a~~WL~~VEI~~~---Ri-DD~PrtF 152 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG------ARHYGNIRAEAQDWLEEVEIDLD---RI-DDLPRTF 152 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhh------hhhhhhHHHHHHHHHHhcccCcc---cc-cCccccc
Confidence 12335799999863 32222 3444443211 11234566778889999988753 23 4568899
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 219 SgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||+|||+.|||-|++.|+++|+||||.|||...+..++++++.|..+ |.+++++|||.. -+.-++||.++|++|+++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~g~vv 231 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVV 231 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecCCCEe
Confidence 999999999999999999999999999999999999999999999865 999999999965 356689999999999999
Q ss_pred EecChhhHHH
Q 005754 298 YFGKGSEAMS 307 (679)
Q Consensus 298 ~~G~~~~~~~ 307 (679)
+.|-.+.+++
T Consensus 232 e~GLTDrvLD 241 (258)
T COG4107 232 ESGLTDRVLD 241 (258)
T ss_pred cccccccccc
Confidence 9998877643
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=262.31 Aligned_cols=147 Identities=41% Similarity=0.742 Sum_probs=130.8
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI 161 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~ 161 (679)
+++.++.+|+++|+++++|++++|+||||||||||+++|+|.+++ ..|++.++|.+... ..++.++|++|
T Consensus 7 ~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--- 80 (157)
T cd00267 7 FRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKLPLEELRRRIGYVPQ--- 80 (157)
T ss_pred EEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccCCHHHHHhceEEEee---
Confidence 344456799999999999999999999999999999999999875 47999999875432 33567888888
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|||||+||++||++++.+|++++|
T Consensus 81 --------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 81 --------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
||||+|||+.++..+.+.|+++.+.++|++++||++. .+...||++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999877899999999965 5777899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=335.82 Aligned_cols=195 Identities=26% Similarity=0.428 Sum_probs=158.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+|+++++||+++|+|||||||||||++|+|.++| .+|+|.++| .++||+|++.+++ .||+|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~---~~G~i~~~g---------~i~yv~Q~~~l~~-~Ti~e 717 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVHMKG---------SVAYVPQQAWIQN-DSLRE 717 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc---CCcEEEECC---------EEEEEcCCccccC-CcHHH
Confidence 4699999999999999999999999999999999999886 478999886 4899999998875 69999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAE--AVMAELGL-TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|+.|+.. ..++..++.++ ++.+.++. .+..+|.+|+ .+..||||||||++|||||+.+|++++||||||+
T Consensus 718 NI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~sa 790 (1522)
T TIGR00957 718 NILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790 (1522)
T ss_pred HhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9998532 12222222111 12233333 3344577775 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH--hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 248 LDSTAAYRLVSTLGSLV--QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~--~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+.+++.+.+.+.+.. .+|+|+|++||++. ....+|+|++|++|+++..|+.+++.+
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999997542 35899999999975 346699999999999999999988753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=253.05 Aligned_cols=207 Identities=26% Similarity=0.424 Sum_probs=178.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCC--CC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDI--LY 163 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~--l~ 163 (679)
...+++.|||++++|+-+||+|.||||||||.|+|+|.++| ++|+|.+||++... ...++|-++|||+. +-
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P---TsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~N 101 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC---CCceEEECCccccccchHhhhhheeeeecCCccccC
Confidence 34689999999999999999999999999999999999987 47999999987532 23467999999974 66
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
|.+.+.+-|.... ++...+..+++++++.+.|+.+||-... .+-+++.||-||||||++||||+.+|+|++.||
T Consensus 102 PRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdh----an~~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 102 PRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDH----ANYYPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccc----cccchhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 7777777776654 3445567788889999999999996421 234577899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
..++||...+.++.++..+|.++ |.+-|.++.+.. -+..++|+|++|++|++++.|++.+++
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999999999865 999999999865 588999999999999999999998863
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=330.95 Aligned_cols=192 Identities=29% Similarity=0.486 Sum_probs=157.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
.+++|+|+|++|++||+++|+|||||||||||++|+|..+| .+|+|.++| .++||+|++.+++. ||+
T Consensus 438 ~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~---~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~ 504 (1490)
T TIGR01271 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP---SEGKIKHSG---------RISFSPQTSWIMPG-TIK 504 (1490)
T ss_pred cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECC---------EEEEEeCCCccCCc-cHH
Confidence 36799999999999999999999999999999999999986 478999987 48999999999885 999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSI-----AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
||+.|+... .....++. .++.++.+ .+..+|.+|++ +..||||||||++||||++.+|+++|||||
T Consensus 505 eNI~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep 575 (1490)
T TIGR01271 505 DNIIFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSP 575 (1490)
T ss_pred HHHHhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999986321 11111111 12222222 22335667754 678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 245 TSGLDSTAAYRLVST-LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 245 tsgLD~~~~~~i~~~-L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|+|||+.++..+++. ++++. +|+|+|++||++.. ...||++++|++|+++..|+.++..
T Consensus 576 ~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 576 FTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999984 66664 48999999999753 4569999999999999999988875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=331.31 Aligned_cols=195 Identities=30% Similarity=0.429 Sum_probs=153.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
++++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++ +.++|++|++.+++ .|
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~---------~~i~yv~Q~~~l~~-~T 736 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE---------RSIAYVPQQAWIMN-AT 736 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC---------CeEEEEeCCCccCC-Cc
Confidence 34577999999999999999999999999999999999998864 6888752 46999999998875 69
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKT-----SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
|+||+.|... ...+... ..+++.++.+ .+..++.+|. .+..||||||||++|||||+.+|+++|||
T Consensus 737 v~enI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLD 807 (1560)
T PTZ00243 737 VRGNILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLD 807 (1560)
T ss_pred HHHHHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999988421 1111111 1223334444 1122344553 46789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||++||+.++..+++.+.....+|+|+|++||++. ....+|+|++|++|++++.|+.++..
T Consensus 808 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 808 DPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999998754322335899999999975 34789999999999999999988764
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=299.30 Aligned_cols=203 Identities=29% Similarity=0.450 Sum_probs=164.4
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI 161 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~ 161 (679)
.++++.|+.+.+|+|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|...+. .+++|++|++.
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~-------~~v~~l~Q~~~ 76 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG-------LRVGYLSQEPP 76 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC-------ceEEEeCCCCC
Confidence 44566677899999999999999999999999999999999999998764 677776532 35899999999
Q ss_pred CCCCCCHHHHHHHHhhhc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCCccccccccCcc
Q 005754 162 LYPHLTVRETLVFCSLLR-------------LPRT--------------LSTKEKTSIAEAVMAELGLTKCENTIIGNSF 214 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 214 (679)
..+..||.+.+.-+..-. ++.. ...-+.+.+++.++..+|+.+. +++++
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~--- 152 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS--- 152 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh---
Confidence 999999999886532100 0000 0001123567788888999876 55555
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
+||||||.||+||++|+.+|++|||||||++||..+...+-+.|++. +| |+|++||| +..+-+.|++|+-++.|
T Consensus 153 --~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~t~I~~ld~g 226 (530)
T COG0488 153 --SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVATHILELDRG 226 (530)
T ss_pred --hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHhhheEEecCC
Confidence 69999999999999999999999999999999999999999999854 46 99999999 67788999999999999
Q ss_pred eEE-EecChhh
Q 005754 295 RCL-YFGKGSE 304 (679)
Q Consensus 295 ~iv-~~G~~~~ 304 (679)
++. |.|.-+.
T Consensus 227 ~l~~y~Gny~~ 237 (530)
T COG0488 227 KLTPYKGNYSS 237 (530)
T ss_pred ceeEecCCHHH
Confidence 875 5565443
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=265.03 Aligned_cols=198 Identities=23% Similarity=0.339 Sum_probs=135.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHhcCcCC---C--CCeeeEEEECCCCcc-cccc-CcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTML-NVLAGRLHQ---G--HGLTGTILTNNNKPT-KHIS-KRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL-~~L~G~~~~---~--~~~~G~i~~~g~~~~-~~~~-~~i~yv~Q~~~ 161 (679)
+..+|+||||++++||+++|+||||||||||+ ..+...-++ + ....+........+. ...+ ....+..|++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 45799999999999999999999999999996 444321000 0 000000000000010 0111 23444444432
Q ss_pred --CCCCCCHH---HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 162 --LYPHLTVR---ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 162 --l~~~lTV~---E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
+.|..+|. |...+...+. ......++ .+.++.++|.+ ..+ ..++.||||||||++||++|+.+
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLS-----RSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCccccc-----CccCcCCHHHHHHHHHHHHHHhC
Confidence 23444554 2222211111 11222233 46789999975 233 44568999999999999999999
Q ss_pred C--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEec
Q 005754 236 P--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFG 300 (679)
Q Consensus 236 P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G 300 (679)
| +++||||||+|||+.++..+.+.|++++++|.|||++||++. .+ ++||++++| ++|+++++|
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 8 599999999999999999999999999888999999999975 34 699999999 899999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=310.38 Aligned_cols=214 Identities=22% Similarity=0.283 Sum_probs=150.9
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc-----cc-----
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP-----TK----- 147 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~-----~~----- 147 (679)
.+..+++++.|+++.+|+|+||+|++|+++||+|||||||||||++|+|+.....+..|+|.+.++.. +.
T Consensus 177 ~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred eEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence 35667888888888899999999999999999999999999999999996421112345555432210 00
Q ss_pred --------cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHH-------------------HHHHHHHHHHHHc
Q 005754 148 --------HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTK-------------------EKTSIAEAVMAEL 200 (679)
Q Consensus 148 --------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~-------------------~~~~~v~~~l~~l 200 (679)
..++.+++++|++.+... ++.++...... ...+.. ..++++.+++..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 011224555554322111 11111100000 000111 2334566777788
Q ss_pred CCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 201 GLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 201 gL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
|+. +..++ .+..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||+. .
T Consensus 332 gl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~-~ 402 (718)
T PLN03073 332 SFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAR-E 402 (718)
T ss_pred CCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCH-H
Confidence 885 33333 34579999999999999999999999999999999999999999999886 68999999995 4
Q ss_pred HHHHhCCeEEEEeCCeEE-EecChhhH
Q 005754 280 RVYQMFDKVLVLSEGRCL-YFGKGSEA 305 (679)
Q Consensus 280 ~i~~~~D~v~lL~~G~iv-~~G~~~~~ 305 (679)
.+..+||++++|++|++. |.|+.++.
T Consensus 403 ~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 403 FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 578899999999999996 67776543
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=260.94 Aligned_cols=196 Identities=27% Similarity=0.369 Sum_probs=150.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-----cCc-----CCCC--------CeeeEEEECCCCccccccC-
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-----GRL-----HQGH--------GLTGTILTNNNKPTKHISK- 151 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~-----G~~-----~~~~--------~~~G~i~~~g~~~~~~~~~- 151 (679)
..-|+|||.+|+.|++++|.|+||||||||++.+. ... .|.. ...-.+.++..++....|.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 44689999999999999999999999999998552 110 0100 0112355555443221111
Q ss_pred -----------------------------cEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005754 152 -----------------------------RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202 (679)
Q Consensus 152 -----------------------------~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 202 (679)
.+.|..++...+..+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 2445555655667899999999865431 12456778999999
Q ss_pred Cc-cccccccCccCcccCHHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 203 TK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN---PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 203 ~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
.. ..+ +.++.||||||||+.||++|+.+ |++++|||||+|||+..+..+.+.|++++++|.|||+++|++.
T Consensus 159 ~~l~l~-----~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhc-----CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 233 34567999999999999999996 7999999999999999999999999999988999999999975
Q ss_pred HHHHHhCCeEEEE------eCCeEEEecCh
Q 005754 279 SRVYQMFDKVLVL------SEGRCLYFGKG 302 (679)
Q Consensus 279 ~~i~~~~D~v~lL------~~G~iv~~G~~ 302 (679)
..+.+|+++.| ++|++++.|++
T Consensus 234 --~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 --VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred --HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34679999999 79999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=240.20 Aligned_cols=192 Identities=27% Similarity=0.397 Sum_probs=160.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC--CCCc-------cc--cc-cCcEEEEec
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN--NNKP-------TK--HI-SKRTGFVTQ 158 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~--g~~~-------~~--~~-~~~i~yv~Q 158 (679)
-++|+|+||+++.||++++=||||+|||||||+|.|.+.|+ +|+|++. |... .+ +. ++.+|||.|
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 46999999999999999999999999999999999999875 6777764 2211 11 22 456999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
.-...|..+..|.++-...- ...+.+..+.++.+++.+|++.+..-.+ .+.+.||||||||.|||.++.+=+|
T Consensus 101 FLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaRgfivd~pI 173 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIARGFIVDYPI 173 (235)
T ss_pred HHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhhhhhccCce
Confidence 98888888877776654432 2456777888899999999998754432 3668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|+|||||++||..++..++++|++-+.+|..+|=+-|| .+--...+||++-+..
T Consensus 174 LLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 174 LLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred EEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 99999999999999999999999998899999999999 4434678999998864
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-30 Score=239.08 Aligned_cols=133 Identities=45% Similarity=0.749 Sum_probs=118.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCHH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
|+|||+++++||+++|+|+||||||||+++|+|..++ .+|.|.++|.+... ..++.++|++|++.+++.+||+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999999999999999875 58999999877643 4567899999999999999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
|| ...++++++++.+++.+..++.++. ....||||||||++||+||+.+|++++|||||+
T Consensus 78 ~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN----------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH----------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc----------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 98 2334588899999998877777754 347899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=300.49 Aligned_cols=191 Identities=27% Similarity=0.467 Sum_probs=161.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
.+.|+|||++|++|+++||+||-|||||+||.+|.|..+. .+|++.++|. ++||+|++-++.. ||||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs---------iaYv~Q~pWI~ng-Tvre 600 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS---------VAYVPQQPWIQNG-TVRE 600 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe---------EEEeccccHhhCC-cHHH
Confidence 3489999999999999999999999999999999998874 5889999875 8999999998875 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-------ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-------KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
||.|+..+ . +++-+++++...|. ..-.|.||++ .-.||||||||+++|||+-++.+|+|||.
T Consensus 601 NILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGEr-GinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 601 NILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGER-GINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred hhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCC-ccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 99997432 2 23344555554443 3445778865 44699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|.|++|++...++.+..-+..-+++|+|++|||. +....+|+|++|++|++...|+.+|..+
T Consensus 670 plSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 9999999999999877665445689999999985 4688999999999999999999999873
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=299.79 Aligned_cols=201 Identities=27% Similarity=0.394 Sum_probs=167.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
..+|||||++|+|||.+||+|..|||||||+++|-++..| .+|+|.+||.++.+ .+|++++.+||||.+|.+
T Consensus 1153 p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~---~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG- 1228 (1381)
T KOG0054|consen 1153 PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP---AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG- 1228 (1381)
T ss_pred cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc---cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-
Confidence 4699999999999999999999999999999999999875 47999999988754 679999999999999987
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIA-----EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|||+||.-.. ..++++..+.. .+.++ .++...|+.+.+ ....+|-||||.+++||||+++++||+|
T Consensus 1229 TvR~NLDPf~------e~sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1229 TVRFNLDPFD------EYSDDEIWEALERCQLKDVVS--SLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred ccccccCccc------ccCHHHHHHHHHHhChHHHHh--hCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 9999985211 22333332222 12222 333445666653 4567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||.|++.|+++-..|.+.||+--+ ++|||.+-|+.+. +. -+|||+||++|+++++|+|.+.++
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 999999999999999999998543 7999999999875 55 489999999999999999998864
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=247.96 Aligned_cols=166 Identities=17% Similarity=0.240 Sum_probs=129.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC------CeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCC
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH------GLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~------~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lT 167 (679)
+++++++++| +++|+||||||||||+++|+|+..+.. ...|++.++|..... ..++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999875431 123467666665422 2356899999998765
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh----hCCCeEEEeC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML----INPSLLILDE 243 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~P~lllLDE 243 (679)
|.. . ..++++++++. .+..+ ..+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~-----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKV-----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCccc-----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12345666666 33333 345679999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||+|||+..+..+.+.|+++++ +.|||++||++. ..+.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999865 689999999974 3578999999974
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=268.92 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=162.8
Q ss_pred CCccCCCCccccccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEE
Q 005754 76 TSSTDDQGSTAKIQE-RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTG 154 (679)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~ 154 (679)
......+++++.|++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...|. +|.|.+.- .-++|
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~-------~v~ig 388 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGE-------TVKIG 388 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCC-------ceEEE
Confidence 345566777778855 68999999999999999999999999999999999988763 78777642 23589
Q ss_pred EEecCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHH
Q 005754 155 FVTQDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 155 yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|..|+. .+.+..|+.|++.-.. +. ..+..+...|..+++... ..+ .++.||||||.|+.+|+.+
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~~~-----~v~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQEK-----PVGVLSGGEKARLLLAKLL 454 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhC----cc-----ccHHHHHHHHHHcCCChHHHhC-----chhhcCHhHHHHHHHHHHh
Confidence 999986 4457889999886321 11 114567889999999742 233 4557999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEe-cChhhHH
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYF-GKGSEAM 306 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~-G~~~~~~ 306 (679)
+.+|.+|||||||+.||..+...+.+.|.+. .-|||++|||. ..+-+++++++.+.+ ++..+ |.-++..
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999999999999999876 46999999994 568999999999998 55444 7655543
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=259.51 Aligned_cols=201 Identities=26% Similarity=0.436 Sum_probs=171.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecC---CCCCC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQD---DILYP 164 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~---~~l~~ 164 (679)
.++|+||++++||+++|.|-=|||+|-|+++|.|..++ .+|+|.++|++.. ...+..++|||.| ..++.
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 58999999999999999999999999999999996553 4899999998643 2456789999987 46899
Q ss_pred CCCHHHHHHHHhhhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 165 HLTVRETLVFCSLLRLP-R-TLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
.++|.||+.++...+.. . ..+....++.+++..+.+++.. ..+. .+..||||.||||.|||.|..+|++|||
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~LSGGNQQKVvlarwL~~~p~vLil 425 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-----PIGTLSGGNQQKVVLARWLATDPKVLIL 425 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc-----hhhcCCchhhhhHHHHHHHhcCCCEEEE
Confidence 99999999887332221 1 3556666778899999998853 2223 4557999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
||||.|.|.-++.+|.++|++++++|++||++|.+. +|+..+||||++|++|+++..=+.
T Consensus 426 DEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 426 DEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred CCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999995 579999999999999999874433
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-29 Score=233.84 Aligned_cols=196 Identities=30% Similarity=0.449 Sum_probs=167.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV 168 (679)
-|-.+|+++..||++-++|||||||||||-.++|+.+ .+|+|.++|.+... ++.|.-+|..|+..-...|.|
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~----~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV 89 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC----CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhh
Confidence 4678999999999999999999999999999999986 38999999988643 456777899888766666889
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-----hCC--CeEEE
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INP--SLLIL 241 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-----~~P--~lllL 241 (679)
..++... . +.++....++++.+.++|++... +.++.|||||-|||-+|...+ .|| ++|++
T Consensus 90 ~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~-----Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 90 WHYLTLH----Q----PDKTRTELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred hhhhhhc----C----chHHHHHHHHHHHhhhcccchhh-----hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 8887642 2 34566667888999999987554 345689999999999997665 355 69999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||.++||...+..+-..|.+++.+|.+||++.||.+. ..+.+|++++|++|+++..|..+|++
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999999875 78899999999999999999998874
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=244.84 Aligned_cols=190 Identities=18% Similarity=0.324 Sum_probs=133.6
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC----------------cCCCCC---eee--EEEECCCCc
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR----------------LHQGHG---LTG--TILTNNNKP 145 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~----------------~~~~~~---~~G--~i~~~g~~~ 145 (679)
.|+++.++++++ |++++|+|||||||||||++|++. +.++.+ ..+ ++.+++.+.
T Consensus 11 sy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~ 85 (243)
T cd03272 11 SYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDN 85 (243)
T ss_pred CcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCC
Confidence 466777888887 789999999999999999999843 222211 122 344444211
Q ss_pred -------cccccCcEEEEecCCCCCC-CCCHHHHHHHHhhhcCCCCCCH-HHHHHHHHHHHHHcCCCccccccccCccCc
Q 005754 146 -------TKHISKRTGFVTQDDILYP-HLTVRETLVFCSLLRLPRTLST-KEKTSIAEAVMAELGLTKCENTIIGNSFIR 216 (679)
Q Consensus 146 -------~~~~~~~i~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 216 (679)
....++.++|++|+..+++ ..|..|...+............ .....++ .+.+++.+..+ ..++
T Consensus 86 ~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~-----~~~~ 157 (243)
T cd03272 86 RFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQ-----QEMQ 157 (243)
T ss_pred ccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhcccccc-----cccc
Confidence 1135677999999887776 4677776666554332211000 0001122 23344443333 3456
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 217 GISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
.||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|||+++|++ ++.++||++++|.
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 799999999999999974 5899999999999999999999999999866 78999999984 4789999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-28 Score=247.10 Aligned_cols=181 Identities=16% Similarity=0.213 Sum_probs=135.7
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~l 166 (679)
.|+++.+++++++ ++++|+||||||||||+++|.-. +|.+.....++++++++|+..+++.+
T Consensus 13 ~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-------------~G~~~~~~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 13 SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-------------FGFRASKMRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-------------hccCHHHhhhhhHHHHhcCCCCCCCC
Confidence 5677889999987 79999999999999999999721 22221111235689999998888999
Q ss_pred CHHHHHHHHhhhcCC-----CCCCHHHHHH--HHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh----C
Q 005754 167 TVRETLVFCSLLRLP-----RTLSTKEKTS--IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI----N 235 (679)
Q Consensus 167 TV~E~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~----~ 235 (679)
|++|++.+....... .....++... ..+++++.++|.+..++.+ +.||+|||||++||++++. +
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~ 149 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKP 149 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCC
Confidence 999987665432100 0011111110 1255667778877666544 4699999999999999974 4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|+++++||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.++||++++|..
T Consensus 150 p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 150 TPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 799999999999999999999999999864 67888888985 57899999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-26 Score=239.15 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=134.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC-Cc-c-----ccccCcEEEEecCC---------CCCCCCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN-KP-T-----KHISKRTGFVTQDD---------ILYPHLT 167 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~-~~-~-----~~~~~~i~yv~Q~~---------~l~~~lT 167 (679)
..+++|+||||||||||+++|++.+.+. ..|++...+. +. . ......+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 3499999999999999999999987642 1244554443 11 0 11234799999985 3456789
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCccCcccCHHHHHHHHHHHHH
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT---------------IIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
|.+++......+.... .++...+++.++|+.+|+...... ...+..++.||||||||++||++|
T Consensus 103 V~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 9988865432110000 122334678889999998621000 112345678999999999999999
Q ss_pred h----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 233 L----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 233 ~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+ .+|+++++||||+|||+.++..+.+.|+++. +|.|||++||++ ++.+.+|+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 4789999999999999999999999999985 489999999994 5788999999876
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-25 Score=270.86 Aligned_cols=138 Identities=28% Similarity=0.359 Sum_probs=112.3
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHh---hCCC
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEML---INPS 237 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~---~~P~ 237 (679)
.+...||.|+|.+...-........++..+++ ++|+.+||.+. .+.. +.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999886542211112234455566 47899999864 4443 4579999999999999998 6999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe------CCeEEEecChhhHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS------EGRCLYFGKGSEAMS 307 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 307 (679)
++||||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999988999999999975 45 8999999996 799999999988653
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=225.68 Aligned_cols=164 Identities=19% Similarity=0.293 Sum_probs=122.7
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHh----cCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCC-----CCCCCC
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLA----GRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDD-----ILYPHL 166 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~----G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~-----~l~~~l 166 (679)
.++++.+| +++|+|||||||||||++|. |...++ .|.+..+..... ...+..+++++|++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34567788 99999999999999999995 776543 233221111111 13345799999987 344556
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH------HHHHHHHhhCCCeEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR------VSIAHEMLINPSLLI 240 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~IA~aL~~~P~lll 240 (679)
|+.|++.+. +..+ +++.+ ++.++.||+||||| ++||++++.+|++++
T Consensus 92 ~~~~~~~~~---------~~~~----~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFC---------HQGE----SNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeee---------chHH----HHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 888888542 1111 22222 23355799999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 241 LDEPTSGLDSTAAY-RLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 241 LDEPtsgLD~~~~~-~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+||||++||+.++. .+.+.|++++++ |.|||++||++. ....+|+++.|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 99999999999999 999999999876 899999999964 4578999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=224.56 Aligned_cols=179 Identities=18% Similarity=0.145 Sum_probs=122.9
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC-C-c-cccccCcEEEEecCCCCCCCCCHHH
Q 005754 95 NGITGMVS-PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN-K-P-TKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 95 ~~vs~~i~-~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~-~-~-~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
++++|... +|++++|+|||||||||||++|++.+... ..+....+.. . . .......+++++|++.... ++..
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~--~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r 93 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGK--TPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVER 93 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecC--ccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEE
Confidence 55666543 58999999999999999999999644211 1122221100 0 0 1123456899999863211 1111
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh----------CCCeEE
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI----------NPSLLI 240 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~----------~P~lll 240 (679)
.. ..+..+..+.+ .++..++.+..+ ..++.||||||||++||++|+. +|++++
T Consensus 94 ~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ll 156 (213)
T cd03279 94 SR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALF 156 (213)
T ss_pred ec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEE
Confidence 10 12222222211 123333433333 3456799999999999999985 578999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|||||+|||+.++..+.+.|++++++|.|||++||++. .+...+|+++++++|.
T Consensus 157 lDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 157 IDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999999999999999999999877999999999975 5788999999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=231.49 Aligned_cols=206 Identities=25% Similarity=0.368 Sum_probs=175.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc----cc--cccCcEEEEecCC---C
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP----TK--HISKRTGFVTQDD---I 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~----~~--~~~~~i~yv~Q~~---~ 161 (679)
...+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.++|++. +. ..+..++|||.|. .
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~G 347 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHG 347 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEeccccCCHHHHHhcCCccCChhhccCc
Confidence 45789999999999999999999999999999999998652 59999999874 11 2345799999985 5
Q ss_pred CCCCCCHHHHHHHHhhhcC----CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 162 LYPHLTVRETLVFCSLLRL----PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
+.+.+|+.||+.+...-+. .........++.++++++++++..... ....+.||||++||+-+||+|..+|+
T Consensus 348 lv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~ 423 (501)
T COG3845 348 LVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRPD 423 (501)
T ss_pred cccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCCC
Confidence 7889999999987654321 112456777888999999999873211 12356799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+|++.+||.|||..+.+.|.+.|.+.+++|+.|++++-+. +++++++|||.+|.+|+++...++++
T Consensus 424 lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 424 LLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHHHHhhheeeeeeCCceeccccccc
Confidence 9999999999999999999999999999999999999996 57999999999999999998887765
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=243.43 Aligned_cols=181 Identities=30% Similarity=0.441 Sum_probs=145.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+..|++.++.+++||.+.|.||||||||||+|+|+|+.+.. +|+|... ....+-|+||.|.+... |.+|
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P-------~~~~~lflpQ~PY~p~G-tLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP-------ADSALLFLPQRPYLPQG-TLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC-------CCCceEEecCCCCCCCc-cHHH
Confidence 47899999999999999999999999999999999999753 4665443 12347899999998776 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-CccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
-+.|.... ++ -..+.+.++|.++||++..++.=+ ++--+.||+|||||+++||.|+++|++++|||.|++||
T Consensus 475 ~l~YP~~~------~~-~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 475 ALCYPNAA------PD-FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHhCCCCC------CC-CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 99874321 11 223457788999999886654322 12356799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 250 STAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 250 ~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+.++..+++.|++-. .+.|||-+.|++. +..+.++.+-+.
T Consensus 548 e~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999998732 3799999999964 567777766554
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=251.73 Aligned_cols=125 Identities=30% Similarity=0.427 Sum_probs=105.5
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC---CeEEE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP---SLLIL 241 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P---~lllL 241 (679)
+||.|++.|...+. + ..+..+.|+.+||... .+. .+..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998865431 1 1234578999999752 333 34579999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+++.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999888999999999975 34 689999999 689999999998764
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-25 Score=228.51 Aligned_cols=188 Identities=24% Similarity=0.307 Sum_probs=151.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV 168 (679)
-+..||++|+.||++-|+|.||||||||++.|.|+.+|+ +|+|.+||++.+. +.|+-++-|+-|..+|+.+--
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~ 414 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC
Confidence 467899999999999999999999999999999999974 7999999998753 456667777877777765322
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
.|+ . ...+.++..|+++.|.+...-.=|+-..-.||.|||||+++-.||+-+-+|+++||=.+--
T Consensus 415 ~e~------------~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQ 479 (546)
T COG4615 415 PEG------------K---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQ 479 (546)
T ss_pred Ccc------------C---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccC
Confidence 221 0 1234567788888776643222122234579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH-HHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 249 DSTAAYRLVSTLGS-LVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 249 D~~~~~~i~~~L~~-l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
||.-++.+.+.+-- ++++|+||+.+|||. .-|..+||++.+++|++++.-
T Consensus 480 DPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 480 DPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred ChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 99999999887765 466799999999995 368999999999999998754
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-23 Score=243.39 Aligned_cols=125 Identities=29% Similarity=0.415 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhh---CCCeEE
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLI---NPSLLI 240 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~---~P~lll 240 (679)
.+||.|.+.|...+. ...+..++|+.+||... .+ +.+++||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~-----~~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLG-----QPATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhc-----CccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467888887764321 01134578889999752 33 3456799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~ 305 (679)
|||||+|||+..+..+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999975 34 679999999 78999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=227.71 Aligned_cols=212 Identities=23% Similarity=0.318 Sum_probs=141.8
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEec
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q 158 (679)
+...+++..+.++.+++|++|++.+|+-++|+|+|||||||+|++|+|+..|.....+.-.++ +.......+.+-+|.+
T Consensus 76 vk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~av~~v~~ 154 (614)
T KOG0927|consen 76 VKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQAVQAVVM 154 (614)
T ss_pred ceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHHHHHHhh
Confidence 345566777888999999999999999999999999999999999999988743322221221 1111110111111110
Q ss_pred CCCCCCCCCHHHHHHHHh-hh-----------------cCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccC
Q 005754 159 DDILYPHLTVRETLVFCS-LL-----------------RLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGIS 219 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~-~~-----------------~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 219 (679)
. .-..+.-+.+.. .+ |. ..+.....+.++..+|..+|-. +..+ +.+.++|
T Consensus 155 ~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~~-----k~~~~~S 223 (614)
T KOG0927|consen 155 E-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQD-----KKVKDLS 223 (614)
T ss_pred h-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHHH-----HHhhccC
Confidence 0 000000010000 00 00 0122233344556666666654 3333 3456799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe-EEE
Q 005754 220 GGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR-CLY 298 (679)
Q Consensus 220 gGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~-iv~ 298 (679)
||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+ + ++|+++|. .+.+-..|.+|+-|.+++ +.|
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHS-QDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecc-hhhhhhHhhhhheecccceeee
Confidence 9999999999999999999999999999999999999988876532 1 89999998 556889999999999999 456
Q ss_pred ecChhhH
Q 005754 299 FGKGSEA 305 (679)
Q Consensus 299 ~G~~~~~ 305 (679)
.|+-++-
T Consensus 301 ~Gnydqy 307 (614)
T KOG0927|consen 301 EGNYDQY 307 (614)
T ss_pred cCCHHHH
Confidence 6776553
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=205.85 Aligned_cols=169 Identities=19% Similarity=0.181 Sum_probs=120.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCCCCCCCCH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
++++++++.+| +.+|+|||||||||||.+|........... ..|.... ......+.+++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~----~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDT----NRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccc----cccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 46788888888 889999999999999999975332111000 0111100 0113457888887665541
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH----hhCCCeEEEeCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM----LINPSLLILDEP 244 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL----~~~P~lllLDEP 244 (679)
... ...++.++++++. .+..++ .++.||+|||||++||++| +.+|++++||||
T Consensus 84 --------------~~~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP 140 (198)
T cd03276 84 --------------PLC-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEF 140 (198)
T ss_pred --------------cCC-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecCc
Confidence 011 1123456677766 443443 4557999999999999999 589999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC---CcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR---GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~---g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
|+|||+.++..+.+.|+++.++ +.|||+++|++. ++.+ +|+|.+|..++
T Consensus 141 ~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 141 DVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 9999999999999999998653 469999999976 4655 59999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=199.98 Aligned_cols=211 Identities=23% Similarity=0.314 Sum_probs=163.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC-eeeEEEECCCCc---c-cc----ccCcEEEEecCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG-LTGTILTNNNKP---T-KH----ISKRTGFVTQDD 160 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~-~~G~i~~~g~~~---~-~~----~~~~i~yv~Q~~ 160 (679)
..+++++||+++..||+-+++|.||||||-..|+|.|..+..=. +.....+++.+. + ++ ..+.|+++||++
T Consensus 19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 45689999999999999999999999999999999998763111 111223333221 1 11 234688999998
Q ss_pred C--CCCCCCHHHHHHHHhhhcCCCCC-------CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH
Q 005754 161 I--LYPHLTVRETLVFCSLLRLPRTL-------STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 161 ~--l~~~lTV~E~l~~~~~~~~~~~~-------~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
. +-|.-+|...|--. .|... .-..+++++-++|.++|+.+..| +-..++.+|.-||-|+|.||.|
T Consensus 99 ~sCLDPS~~iG~QlIq~----IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--IM~SYP~ElTeGE~QKVMIA~A 172 (330)
T COG4170 99 QSCLDPSERVGRQLIQN----IPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--IMRSYPYELTEGECQKVMIAIA 172 (330)
T ss_pred hhhcChHHHHHHHHHhh----CccccccchHhhhhchhHHHHHHHHHHhccccHHH--HHHhCcchhccCcceeeeeehh
Confidence 5 44444444333211 11110 11234567888999999998777 4556889999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
++.+|++|+.||||+.+|+.++.++..+|.++.+ +|.||++++||.. .+-+.||++-+|.=|+-++.++.+++++
T Consensus 173 ~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999975 5999999999975 5899999999999999999999888754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=214.17 Aligned_cols=188 Identities=22% Similarity=0.305 Sum_probs=145.7
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEe
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
..++-.+++.+++ .-|+-=.++|..||+++++||||-||||+.++|+|.++|+. |. ...-+++|=|
T Consensus 342 lv~y~~~~k~~g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----------~~~~~vSyKP 407 (591)
T COG1245 342 LVEYPDLKKTYGD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----------EEDLKVSYKP 407 (591)
T ss_pred eeecchheeecCc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----------CccceEeecc
Confidence 3455556666663 34555567778889999999999999999999999999864 32 1123578888
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|.-.--...||++.+.-...-+... .....++++-|+|+...+..+. +|||||.|||+||.+|..+++
T Consensus 408 QyI~~~~~gtV~~~l~~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 408 QYISPDYDGTVEDLLRSAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred eeecCCCCCcHHHHHHHhhhhhccc-------chhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccC
Confidence 8754445679999886543221111 1223567888899887766554 699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+++||||++.||.+.+..+-+.|++... .++|.+++.||.. .+--++||+++.+
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 9999999999999999999999999986 4899999999965 3666889998875
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=224.93 Aligned_cols=199 Identities=22% Similarity=0.297 Sum_probs=151.6
Q ss_pred ccCCCCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEE
Q 005754 78 STDDQGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFV 156 (679)
Q Consensus 78 ~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv 156 (679)
.+.+.+.+..|.++ .++++++|-|+.++.+|++||||+|||||||++.|.+.|. .|.+.-.- ..++++-
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~~~-------H~~~~~y 458 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSRHS-------HNKLPRY 458 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccccc-------cccchhh
Confidence 34455666667655 6999999999999999999999999999999999999874 45443221 2223444
Q ss_pred ecC--CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 157 TQD--DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 157 ~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
.|. +.+--+.++-|++.-.. +.....+.+..+|.++||....+ +...+.||+|||+||..|+.++.
T Consensus 459 ~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q----~~p~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 459 NQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQ----VVPMSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccc----ccchhhcccccchhHHHHHHHhc
Confidence 443 23333567777764211 11234456788999999984333 23455799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecCh
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKG 302 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~ 302 (679)
.|.+|+|||||+|||..+...+-+.|.+. ..+||+++||-. -|-++++++++..+|.+. +.|..
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccH
Confidence 99999999999999999999999998875 458999999965 588999999999987764 55643
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-23 Score=211.49 Aligned_cols=180 Identities=15% Similarity=0.194 Sum_probs=118.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC--------CCcc---ccccCcEEEEecCCCC-CCCCCHH
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN--------NKPT---KHISKRTGFVTQDDIL-YPHLTVR 169 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g--------~~~~---~~~~~~i~yv~Q~~~l-~~~lTV~ 169 (679)
.++ +++|+|||||||||||++|++...+. .|.+..++ .... ....-.+.|..|++.. .-..+++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 344 99999999999999999999977532 23332221 1100 0111224444443221 1011111
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------cccC--------ccCcccCHHHHHHHHHHHHH
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENT---------IIGN--------SFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~--------~~~~~LSgGerqRv~IA~aL 232 (679)
+... ..+... +....+.++++++.+|+...... .+.+ ..+..||||||||++||+++
T Consensus 97 ~~~~---~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 97 GGSS---SYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred CCce---EEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHH
Confidence 1110 001111 11123345688888998643211 1111 12378999999999999999
Q ss_pred hhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 233 LIN----PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 233 ~~~----P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+.+ |+++|+||||+|||+..+..+.+.|++++++|.+||++||++ ++.+.+|++++|.+
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 875 899999999999999999999999999987799999999994 46789999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=205.83 Aligned_cols=188 Identities=22% Similarity=0.309 Sum_probs=144.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
..+.+|+|++|+.|+-+.|.||||||||+||++|+|+.+. ..|.+....... .+.+-||||.|.+.-. |.||
T Consensus 448 ~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~----~~~lfflPQrPYmt~G-TLRd 519 (659)
T KOG0060|consen 448 DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG----PKDLFFLPQRPYMTLG-TLRD 519 (659)
T ss_pred ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC----CCceEEecCCCCcccc-chhh
Confidence 5688999999999999999999999999999999999874 356665432211 1458999999987555 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc------ccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI------IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.+.|....-. ..++....+++.+.|+.++|.|..... +--.....||+||+||++.||-+.++|++-+|||.
T Consensus 520 QvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 520 QVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred eeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 9988632111 111222345567778888877654432 11123457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||++|......+.+.+++ .|.|.|-+.|..+ +.++=|.++-|+.
T Consensus 598 TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred hhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999888775 4999999999964 5676788888864
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=211.30 Aligned_cols=196 Identities=23% Similarity=0.294 Sum_probs=136.7
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC-C
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD-D 160 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~-~ 160 (679)
++.+-.||++.+|++-++.+..|..++|+|+||+|||||||+|+. |.| .+-+..++.+ --+++-. +
T Consensus 84 ~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v--~~f~veqE~~--g~~t~~~~~ 150 (582)
T KOG0062|consen 84 DNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQV--SGFHVEQEVR--GDDTEALQS 150 (582)
T ss_pred eeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCc--CccCchhhee--ccchHHHhh
Confidence 345566889999999999999999999999999999999999986 111 1111111111 1122211 1
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTK-EKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.+-.+.++.+.+.--.. +... +..+...++|..+|.++-. -...+++||||=|.|+++||||..+|+||
T Consensus 151 ~l~~D~~~~dfl~~e~~------l~~~~~l~ei~~~~L~glGFt~em----q~~pt~slSGGWrMrlaLARAlf~~pDlL 220 (582)
T KOG0062|consen 151 VLESDTERLDFLAEEKE------LLAGLTLEEIYDKILAGLGFTPEM----QLQPTKSLSGGWRMRLALARALFAKPDLL 220 (582)
T ss_pred hhhccHHHHHHHHhhhh------hhccchHHHHHHHHHHhCCCCHHH----HhccccccCcchhhHHHHHHHHhcCCCEE
Confidence 22223333332221100 1111 3344455588889887532 12446689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE-EEecChhh
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC-LYFGKGSE 304 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i-v~~G~~~~ 304 (679)
||||||+.||..+..-+.+.|..+ +.|+|+++|| +..+-..|..|+.+++-++ .|.|+-++
T Consensus 221 LLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 221 LLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred eecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 999999999999999999998876 4799999999 5567788888888877665 35565444
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-21 Score=191.78 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=110.0
Q ss_pred eeeceEEEEeCCe-EEEEECCCCCcHHHHHHHHh-cCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 93 ILNGITGMVSPGE-ILAILGPSGSGKSTMLNVLA-GRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 93 iL~~vs~~i~~Ge-~~allGpnGsGKSTLL~~L~-G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
-+-++|+++.+|+ +++|.||||||||||||+|+ +.+.+. .| ......-...++|..|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~---~G------~~vp~~~~~~~~~~~~~~~~l------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQ---SG------LPIPAAEGSSLPVFENIFADI------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHH---cC------CCccccccccCcCccEEEEec-------
Confidence 4558999999995 89999999999999999998 221110 11 000000001233433321110
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
+..+..+ .....+|+||||++.|+++ +.+|+++++|||++|||+
T Consensus 80 ------------------------------g~~~~l~-----~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 80 ------------------------------GDEQSIE-----QSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ------------------------------Cchhhhh-----cCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 1110001 1123599999999999977 589999999999999999
Q ss_pred HHHHHHH-HHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 251 TAAYRLV-STLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 251 ~~~~~i~-~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
..+..+. ..++++.+.|.|+|++||+. ++.+++|+++.|.+|++.+.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 47888877799999999983 578999999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-20 Score=189.94 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=69.2
Q ss_pred cCcccCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEeCCccHHHHHhCC-
Q 005754 214 FIRGISGGERKRVSIAHEM----LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-G-KTIVTSMHQPSSRVYQMFD- 286 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL----~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tii~~tH~~~~~i~~~~D- 286 (679)
.+..||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... +.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4568999999999877554 4799999999999999999999999999999876 5 589999999654 566776
Q ss_pred -eEEEEeCCe
Q 005754 287 -KVLVLSEGR 295 (679)
Q Consensus 287 -~v~lL~~G~ 295 (679)
++++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-20 Score=176.71 Aligned_cols=197 Identities=21% Similarity=0.245 Sum_probs=146.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEec--------
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQ-------- 158 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q-------- 158 (679)
.+++-|+|++++.|..+.++|.||||||||||+|+|.--- ..|.|.++|..+-. .-.....|.--
T Consensus 27 dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv---~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ 103 (291)
T KOG2355|consen 27 DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMV---GGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGI 103 (291)
T ss_pred CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccc---cCCeEEEcCcCccccccccccCceeEecccccccccc
Confidence 4789999999999999999999999999999999996432 13778888865421 11112333321
Q ss_pred --CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 159 --DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 159 --~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+-.+-.+.++.+.| |+.. ... . +|-+++++.|+++-.. ..+.+|-|||+||.|+..|++.=
T Consensus 104 agevplq~D~sae~mi-fgV~-----g~d-p---~Rre~LI~iLDIdl~W-------RmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 104 AGEVPLQGDISAEHMI-FGVG-----GDD-P---ERREKLIDILDIDLRW-------RMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred cccccccccccHHHHH-hhcc-----CCC-h---hHhhhhhhheeccceE-------EEeeccccchhhhHHHHhcccce
Confidence 22233456776655 3221 111 1 3455677777765321 23469999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
++|+|||-|--||..++..+++.|++-++ +|.||+..||--. -+.....+++.|++|+++-.-+.+.+.++
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecCCeeeeccccchhhhh
Confidence 99999999999999999999999999876 5999999999854 47788999999999999876555554443
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-22 Score=195.98 Aligned_cols=205 Identities=27% Similarity=0.458 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHH-ccCchhH-HHHHHHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005754 409 NQFSILLHRSLKE-RKHESLN-TLRVFQVIAASLLSGIMWWHSDF-REVQDRLGLFFFISVFWGVLPSVNAVFAFPQERA 485 (679)
Q Consensus 409 ~Q~~~L~~R~~~~-~r~~~~~-~~r~~~~i~~~ll~G~~f~~~~~-~~~~~r~g~lf~~~~~~~~~~~~~~i~~f~~er~ 485 (679)
+|++.+++|+++. +|++... ..+++..++.++++|.+|.+.++ .+..++.|++++.+....+....+....+..||.
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG 80 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence 5999999999986 6777776 78999999999999999998764 2233678888887776654555555577889999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 005754 486 IFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDA 565 (679)
Q Consensus 486 v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~ 565 (679)
.+.||+.++.|++.+|.+||.+.+++..++.++++.++.|++.|++.+ +|+.+++++++..+++.++|.++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~ 158 (210)
T PF01061_consen 81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSF 158 (210)
T ss_pred ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhh
Confidence 999999999999999999999999999999999999999999999888 677888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHh
Q 005754 566 KQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQY 615 (679)
Q Consensus 566 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef 615 (679)
+.+..+.+++..++++++|.++| .+|+|++|+.|+||++|++|++..++|
T Consensus 159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999998 899999999999999999999999886
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-20 Score=197.59 Aligned_cols=182 Identities=23% Similarity=0.332 Sum_probs=142.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
+++.+++..++.-+..+++|+||+||||++|++.|...|. .|.+.++ .|.+++|-.|...-+-.+.|.+.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~---rgi~~~~-------~r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPT---RGIVGRH-------PRLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcc---cceeeec-------ccceecchhHhhhhHHHHHhHHH
Confidence 5889999999999999999999999999999999987753 4544443 25679999997554434455443
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
.+....+ |. ..+ +..++-+..+||+.- +....+.+||||||-||++|.....+|.+|+|||||+.||-.
T Consensus 448 -d~~~~~~-pG-~~~----ee~r~hl~~~Gl~g~----la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 448 -DFMEKSF-PG-KTE----EEIRRHLGSFGLSGE----LALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred -HHHHHhC-CC-CCH----HHHHHHHHhcCCCch----hhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 2323332 22 223 335566889999742 223346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
+-..+.+.|+.. +..||++||+ .+.+..+|+.+++.++|++.-
T Consensus 517 sl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 517 SLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 999999998876 4589999999 456889999999999999864
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=176.07 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=68.7
Q ss_pred cCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 218 ISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 218 LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 689999999999999999999999999999877899999999964 4678999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-20 Score=192.59 Aligned_cols=189 Identities=27% Similarity=0.385 Sum_probs=143.4
Q ss_pred ccCCCCccccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEE
Q 005754 78 STDDQGSTAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFV 156 (679)
Q Consensus 78 ~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv 156 (679)
+....+++..| +.++.+++++|-|.--..+||+||||.||||||++|.|.+.|. .|+.. +..+-+||+.
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~---~GE~R-------KnhrL~iG~F 655 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN---DGELR-------KNHRLRIGWF 655 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC---cchhh-------ccceeeeech
Confidence 34456667777 6678999999999999999999999999999999999998874 34322 2234568998
Q ss_pred ecCC--CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 157 TQDD--ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 157 ~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
-|.. .|-..-|.-|.|.-. +. ++..+ +...|-.+||...++|. .+..||||||-||++|.--+.
T Consensus 656 dQh~~E~L~~Eetp~EyLqr~--FN----lpyq~----ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 656 DQHANEALNGEETPVEYLQRK--FN----LPYQE----ARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred hhhhHHhhccccCHHHHHHHh--cC----CChHH----HHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcC
Confidence 8864 344556777766421 12 23332 45578889999888874 356799999999999988889
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
.|+||||||||++||.++...+-+.|++. +..||+++||... +.+.--.++++.+-
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccC
Confidence 99999999999999999999999998876 4589999999542 44444456666543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-20 Score=197.56 Aligned_cols=174 Identities=28% Similarity=0.373 Sum_probs=127.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCe-eeEE-------EECCCCcccccc------CcEEEEecC----CCC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL-TGTI-------LTNNNKPTKHIS------KRTGFVTQD----DIL 162 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~-~G~i-------~~~g~~~~~~~~------~~i~yv~Q~----~~l 162 (679)
.++|++++|+||||-||||-+|+|+|.+.|.-|. .+.. .+.|......++ -++..=+|. +..
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 5799999999999999999999999998874331 1100 011111111011 122223443 222
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+.. ||.|.|.- .+.+...+++++.++|++..|+.+ +.|||||-||++||.+++++.+++++|
T Consensus 177 ~KG-~v~elLk~------------~de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY~FD 238 (591)
T COG1245 177 VKG-KVGELLKK------------VDERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYFFD 238 (591)
T ss_pred hcc-hHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEEEEc
Confidence 222 67776532 122345788999999998766554 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
||||-||...+....+.+++|++.+++||++.||.. -+--++|-|.++..
T Consensus 239 EpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 239 EPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred CCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 999999999999999999999988999999999964 35567888888863
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=180.24 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=107.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.+++|+++.. |++++|+||||||||||||+|+|...- ...|.+... -.+++|.+.+++.+|+.
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a-----~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA-----SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec-----CccCcccceEEEeccch
Confidence 356888887775 799999999999999999999985521 112322211 13667778899999999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
|++.+... ....+ .+++.++++.+++ .+|+++++|||++|||
T Consensus 78 d~l~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD 119 (199)
T cd03283 78 DDLRDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTN 119 (199)
T ss_pred hccccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCC
Confidence 99976431 11222 2557777776652 6899999999999999
Q ss_pred HHHHHHHH-HHHHHHHhCCcEEEEEeCCccHHHHHh--CCeEEEE
Q 005754 250 STAAYRLV-STLGSLVQRGKTIVTSMHQPSSRVYQM--FDKVLVL 291 (679)
Q Consensus 250 ~~~~~~i~-~~L~~l~~~g~tii~~tH~~~~~i~~~--~D~v~lL 291 (679)
+..+..+. ..++++.+.|.|+|++||++. .+... .+++..+
T Consensus 120 ~~~~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 120 SRERQAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 99998875 478888877999999999965 34333 3444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-19 Score=187.65 Aligned_cols=193 Identities=22% Similarity=0.401 Sum_probs=143.7
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-----CCeeeEEEECCCCccccccCcEEEEe
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-----HGLTGTILTNNNKPTKHISKRTGFVT 157 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-----~~~~G~i~~~g~~~~~~~~~~i~yv~ 157 (679)
++..+.....+|+|+|++++||++++|+|+|||||||||++|+|....- .+.+|.|.+.... ..+.+|
T Consensus 388 Gv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iP 460 (593)
T COG2401 388 GVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIP 460 (593)
T ss_pred cchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccC
Confidence 3344455678999999999999999999999999999999999964321 1245555442211 123445
Q ss_pred cCC-CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 158 QDD-ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 158 Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
-+. .-|...|+.|.+.- .+. +...+.++|++.||.+.- .-.+..+.||-|||.|+.||.++...|
T Consensus 461 ge~Ep~f~~~tilehl~s-----~tG------D~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerp 526 (593)
T COG2401 461 GEYEPEFGEVTILEHLRS-----KTG------DLNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERP 526 (593)
T ss_pred cccccccCchhHHHHHhh-----ccC------chhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCC
Confidence 432 23445677776631 111 123456789999997632 223456789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHh-CCeEEEEeCCeEE
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCL 297 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv 297 (679)
.+++.||-.|.||+.++..+.+-|.+++++ |.|.+++||+|. -+-++ -|+++++.-|++.
T Consensus 527 n~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 527 NVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred CcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999999999999865 999999999975 35555 6888888766654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=212.85 Aligned_cols=128 Identities=21% Similarity=0.352 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC---CCeEEE
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN---PSLLIL 241 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~---P~lllL 241 (679)
.|||.|.+.|... ..+..+.-+.|..+||.... +| +...+|||||.||+-||.+|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 4678887776421 11233445678899998642 44 35667999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe------CCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS------EGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~------~G~iv~~G~~~~~~~ 307 (679)
||||+||++...+.+++.|++|.+.|.|||++.|++ ++.+.+|.|+-|. .|+|++.|+|+++.+
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999999996 4678899999994 489999999999854
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-19 Score=197.64 Aligned_cols=128 Identities=30% Similarity=0.452 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC---CeEEE
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP---SLLIL 241 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P---~lllL 241 (679)
.|||.|...|.... ....+.-+.|..+||.-. ++| ....+|||||.|||-+|.+|..+. .+++|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888888775421 122334456778899753 245 356689999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 307 (679)
||||+||-....+++++.|.+|.++|.|||++.|++ ++.+.+|.|+-| ..|+|++.|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999999999999999999999999999999996 478999999999 3589999999999865
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-19 Score=182.55 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=115.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEE-EEecCCCCCCCCCH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTG-FVTQDDILYPHLTV 168 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~-yv~Q~~~l~~~lTV 168 (679)
.+.+.+|++++.++|++++|.||||+||||||++++-.. +..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~g~~vpa~~~~~~---- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV--------------------LMAQIGCFVPCDSADIP---- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH--------------------HHHHhCCCcCcccEEEe----
Confidence 457899999999999999999999999999999998210 011222 4444322111
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH--hhCCCeEEEeCC--
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM--LINPSLLILDEP-- 244 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~P~lllLDEP-- 244 (679)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 -----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 72 -----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred -----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 123345556665321 346999999999999999 899999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 245 -TSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 245 -tsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|++||+.+.... .++.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 121 gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999888543 3355554 48999999996 46889999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=180.68 Aligned_cols=76 Identities=25% Similarity=0.365 Sum_probs=68.6
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 217 GISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
.||||||||+++|++++. +|+++++||||+|||+.++..+.+.|+++.+ +.|+|++||++. +...+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999997654 9999999999999999999999999999865 789999999974 568999999998
Q ss_pred CCe
Q 005754 293 EGR 295 (679)
Q Consensus 293 ~G~ 295 (679)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=164.67 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 217 GISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 399999999999999987 78999999999999999999999999998766899999999964 567899999986
Q ss_pred C
Q 005754 293 E 293 (679)
Q Consensus 293 ~ 293 (679)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-18 Score=183.89 Aligned_cols=173 Identities=21% Similarity=0.372 Sum_probs=127.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
..+...+||.|++|-.+.|+||||||||+|.++|+|+.+. ..|.... + ...++-|+||.|.+- .-|.+|
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~---P----~~~~mFYIPQRPYms-~gtlRD 563 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI---P----RPNNIFYIPQRPYMS-GGTLRD 563 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec---C----CCcceEeccCCCccC-cCcccc
Confidence 4578999999999999999999999999999999999873 2333322 1 123489999998765 447777
Q ss_pred HHHHHhh---hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCc----cCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSL---LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS----FIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
.+-|... ++ .+..++ +..+.+|+.+.|++...+-.|-. ...-||||||||+++||.+-++|+.-+|||
T Consensus 564 QIIYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 564 QIIYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred eeecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 7655321 11 012222 33556666666665444332211 223599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
.||+..+.....+.+..++ .|.+.|-+||+|+ +.++
T Consensus 639 cTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~ 674 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKY 674 (728)
T ss_pred hhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHH
Confidence 9999999988888887764 4999999999997 4544
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=197.68 Aligned_cols=136 Identities=26% Similarity=0.398 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLS------TKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
+-.+||.|.+.|...+..+.... -++..++++ .|+.+||.+. .|+. +..|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~-----~~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCc-----hhhCCHHHHHHHHHHHHHhhC
Confidence 34689999999855443221000 013334454 6788898764 4544 457999999999999999999
Q ss_pred C--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| ++++|||||+|||+..+..+++.|++++++|.|||+++|++. ++ ..||+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 999999999999999999999999999888999999999975 35 569999999 899999999998864
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=194.85 Aligned_cols=135 Identities=27% Similarity=0.394 Sum_probs=106.1
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLST------KEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
-.|||.|.+.|...+........ .+..+++ +.|..+||... .+ +.+.+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCC
Confidence 46899999988765432210000 1112222 23667788653 33 455689999999999999999986
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 237 --SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 237 --~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
+++||||||+|||+..+..+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999988999999999964 34 589999999 899999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.4e-18 Score=168.40 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=104.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFC 175 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 175 (679)
..++++.+|++++|+|||||||||||++|++..-. ...|. .. ...+..+++..|. +..++..+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~--~~~g~------~~-~~~~~~i~~~dqi---~~~~~~~d~i--- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL--AQIGC------FV-PAESASIPLVDRI---FTRIGAEDSI--- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH--HHcCC------Cc-cccccccCCcCEE---EEEecCcccc---
Confidence 34455568999999999999999999999953211 01111 10 0111233443221 1111111110
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 005754 176 SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255 (679)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~ 255 (679)
+ ...+.++++++| +..+.+++.+|+++++||||+|||+.....
T Consensus 86 -------------------------------~-----~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 86 -------------------------------S-----DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred -------------------------------c-----CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 0 011246666665 666678899999999999999999999888
Q ss_pred HHH-HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 256 LVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 256 i~~-~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.. .++.+.+.+.++|++||++ ++.+.++++..+..|++...++..+
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 865 4666777789999999985 4677899999999999998886544
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=166.55 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=63.1
Q ss_pred CcccCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 215 IRGISGGERKRVSIAHEML---------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
.+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. . +++++|+.. .+..++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCch-hccchh
Confidence 4458999999999999985 6999999999999999999999999998753 3 455555433 466666
Q ss_pred ---CeEEEEeCCeE
Q 005754 286 ---DKVLVLSEGRC 296 (679)
Q Consensus 286 ---D~v~lL~~G~i 296 (679)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-16 Score=160.37 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=98.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcE-EEEecCCCCCCCCCH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT-GFVTQDDILYPHLTV 168 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i-~yv~Q~~~l~~~lTV 168 (679)
++.+.+|+++++++|++++|+||||+||||+++++++..-- .++ .+| +.....+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------------------a~~G~~v---pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------------------AQIGCFV---PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------------HHcCCCc---chhhcCccC
Confidence 46799999999999999999999999999999999986421 011 122 223445566
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
.|++... ++..+..+ +..+.+|+|++|+ ..+.+++++|+++++|||++|+
T Consensus 72 ~d~I~~~------------------------~~~~d~~~-----~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLSR------------------------LSNDDSME-----RNLSTFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeEe------------------------cCCccccc-----hhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 6665321 11111111 1223699999975 4556788999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHhCCcEEEEEeCCcc
Q 005754 249 DSTAAYRL-VSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 249 D~~~~~~i-~~~L~~l~~~g~tii~~tH~~~ 278 (679)
|+.....+ ...++.+.+.|.++|++||+..
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99876665 4567778878999999999853
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-17 Score=174.50 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=145.2
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc---CCCCC---eeeEEEECCCCccc----cccC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL---HQGHG---LTGTILTNNNKPTK----HISK 151 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~---~~~~~---~~G~i~~~g~~~~~----~~~~ 151 (679)
++.+-.-.++..+.|-|+.|-.|..++|+||||-||||||+-|+.+. +|.-. -+-+|..+...... .-.+
T Consensus 268 EnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~k 347 (807)
T KOG0066|consen 268 ENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKK 347 (807)
T ss_pred eeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHH
Confidence 33344445678899999999999999999999999999999999863 22110 12233333322110 0011
Q ss_pred cEEEEecCC-----CCCCCCCHHHHHHH-HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH
Q 005754 152 RTGFVTQDD-----ILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225 (679)
Q Consensus 152 ~i~yv~Q~~-----~l~~~lTV~E~l~~-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 225 (679)
+...+..++ .--...|+.|-+.- +..+|.. .....+.++..+|.-||.+.- +-++....+|||=|.|
T Consensus 348 Rl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskE----MQ~rPt~kFSGGWRMR 420 (807)
T KOG0066|consen 348 RLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKE----MQERPTTKFSGGWRMR 420 (807)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChh----HhcCCccccCCceeee
Confidence 222221111 11234577776643 2333321 122344567788998988753 2244556799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEE-ecCh
Q 005754 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLY-FGKG 302 (679)
Q Consensus 226 v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~-~G~~ 302 (679)
|++||||...|.+|.|||||+.||..+...+-+.|..+. +|.++++||-. .+-..|..|+.|++-++-| .|.-
T Consensus 421 vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999999988888875 59999999955 5888999999999877754 4543
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=154.08 Aligned_cols=157 Identities=21% Similarity=0.168 Sum_probs=108.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.+.+|+++..++ ++++|.||||||||||||++++..-. +..| .... ..+..++++.| +++.+++.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~~g------~~vp-~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQIG------SFVP-ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hccC------Ceec-cccceecceee---EeccCCch
Confidence 35689999999987 99999999999999999999875421 1111 1111 11345777765 56777777
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH--HHHHHHHHHHHHhhCCCeEEEeCC---
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEP--- 244 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~IA~aL~~~P~lllLDEP--- 244 (679)
|++..+ .|. .|+++++-+...+.+|++++||||
T Consensus 84 ~~ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~g 121 (216)
T cd03284 84 DDLAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRG 121 (216)
T ss_pred hhhccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 776432 111 123333333344579999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+++|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 122 t~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 122 TSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 888887552 23455555665 89999999994 57889999888888998877766554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-15 Score=152.83 Aligned_cols=139 Identities=22% Similarity=0.273 Sum_probs=94.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
.-++|+||||||||||+++|+|.++++ +|++.++|++.. .++.+.+++++|++ +.+.++|.|+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 578999999999999999999999863 789999987653 23444567788864 334455544321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 005754 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST 259 (679)
Q Consensus 180 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~ 259 (679)
+.+ | ........+|+++++|||++ .+.+..+
T Consensus 182 ------k~~--------------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l 212 (270)
T TIGR02858 182 ------KAE--------------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEAL 212 (270)
T ss_pred ------HHH--------------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHH
Confidence 000 0 12223336999999999974 3344445
Q ss_pred HHHHHhCCcEEEEEeCCccHH-H-----------HHhCCeEEEEeCCeEEEecChhhH
Q 005754 260 LGSLVQRGKTIVTSMHQPSSR-V-----------YQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 260 L~~l~~~g~tii~~tH~~~~~-i-----------~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
++.+ ++|.++|+++|++..+ + ..+|||+++|++|+ ..|+++++
T Consensus 213 ~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 213 LEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 5554 4699999999985431 2 26689999999887 55655543
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=151.04 Aligned_cols=178 Identities=26% Similarity=0.372 Sum_probs=134.0
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 90 ERTILNGITGMVSPG-----EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 90 ~~~iL~~vs~~i~~G-----e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
.+.-+.+..+.|+.| |++..+|.||-||||++++++|+++|+.+ |++- .-.++|=||.-.-=.
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~--~e~p----------~lnVSykpqkispK~ 415 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG--GEIP----------VLNVSYKPQKISPKR 415 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc--Cccc----------ccceeccccccCccc
Confidence 355677888888877 57899999999999999999999987532 2221 224677788754434
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
.-||++.+.-- .| +.-...+-+.++++-|.+++..|.. +.+|||||.|||++|..|-..+++++.|||
T Consensus 416 ~~tvR~ll~~k--Ir-----~ay~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEp 483 (592)
T KOG0063|consen 416 EGTVRQLLHTK--IR-----DAYMHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEP 483 (592)
T ss_pred cchHHHHHHHH--hH-----hhhcCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCc
Confidence 56899877531 11 0111224467788888888766544 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 245 TSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
.+-||++.+..--+.+++.. +.++|-.++.||.-- .--++|||++..
T Consensus 484 sAylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 484 SAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 99999999999999998864 568899999999532 234788888754
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-14 Score=143.63 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=58.3
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV-STLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+++|+.--+..
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 358888777444332 34599999999999999999887775 556777774 89999999996 47788876444444
Q ss_pred CeEEE
Q 005754 294 GRCLY 298 (679)
Q Consensus 294 G~iv~ 298 (679)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44433
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=141.35 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=65.7
Q ss_pred CcccCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 215 IRGISGGERKRVSIAHEML---------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
...+|+||+|++.||+.|+ .+|+|++||||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 3569999999999999886 699999999999999999999999998764 457899999854 344443
Q ss_pred --CeEEEEeCCeE
Q 005754 286 --DKVLVLSEGRC 296 (679)
Q Consensus 286 --D~v~lL~~G~i 296 (679)
++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57899999987
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-14 Score=143.18 Aligned_cols=88 Identities=27% Similarity=0.438 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005754 191 SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266 (679)
Q Consensus 191 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 266 (679)
+.+.+.+...++... .+|||||.+++||.-|+ ...++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 345556666655432 69999999999997663 45689999999999999999999999999875
Q ss_pred CcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 267 GKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 267 g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+.-+|++||++ .+++.+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47899999995 4789999988764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-13 Score=134.74 Aligned_cols=131 Identities=26% Similarity=0.273 Sum_probs=87.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--cCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC-CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR--LHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP-HLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~--~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~-~lT 167 (679)
+.+-+|+++.=..+.+++|.||||+|||||||.++.. +. ..|..... . .-.++|..|....+. ..+
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la----~~G~~v~a-----~--~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA----HIGSFVPA-----D--SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH----hCCCeeEc-----C--CcEEeeeeeeeeeeCCccC
Confidence 3455666654222389999999999999999999842 22 12322211 0 223667666422111 111
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccC--HHHHHHHHHHHHHhhCCCeEEEeCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGIS--GGERKRVSIAHEMLINPSLLILDEPT 245 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~IA~aL~~~P~lllLDEPt 245 (679)
+.+ ++| .-|-||++++++++.+|+++|+|||+
T Consensus 85 i~~----------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~ 118 (213)
T cd03281 85 VSS----------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFG 118 (213)
T ss_pred hhh----------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEecccc
Confidence 111 122 33679999999999999999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHHhC---CcEEEEEeCCcc
Q 005754 246 SGLDSTAAYRL-VSTLGSLVQR---GKTIVTSMHQPS 278 (679)
Q Consensus 246 sgLD~~~~~~i-~~~L~~l~~~---g~tii~~tH~~~ 278 (679)
+|+|+.....+ ...++++.++ +.++|++||++.
T Consensus 119 ~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 119 KGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 99999765555 5688888764 358999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-13 Score=159.16 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=94.0
Q ss_pred ccceeec-----eEEEEeCC-eEEEEECCCCCcHHHHHHHHhcC-cCCCCCeeeEEEECCCCccccccCcEEEEecCCCC
Q 005754 90 ERTILNG-----ITGMVSPG-EILAILGPSGSGKSTMLNVLAGR-LHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162 (679)
Q Consensus 90 ~~~iL~~-----vs~~i~~G-e~~allGpnGsGKSTLL~~L~G~-~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l 162 (679)
.++++++ +|+.+.+| ++++|.||||+|||||||+|+|. +.+ ..| ..........++|..|...
T Consensus 302 rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a---q~G------~~Vpa~~~~~~~~~d~i~~- 371 (771)
T TIGR01069 302 RHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF---QSG------IPIPANEHSEIPYFEEIFA- 371 (771)
T ss_pred cCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH---HhC------CCccCCccccccchhheee-
Confidence 3456654 78888887 99999999999999999999987 221 111 1100000011222222100
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
..... + .+. ...+.+|+|+++++.|++.+ .+|+++|+|
T Consensus 372 --------------------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlD 409 (771)
T TIGR01069 372 --------------------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFD 409 (771)
T ss_pred --------------------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEec
Confidence 00000 0 011 01235999999999998776 889999999
Q ss_pred CCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEeCCcc
Q 005754 243 EPTSGLDSTAAYRL-VSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 243 EPtsgLD~~~~~~i-~~~L~~l~~~g~tii~~tH~~~ 278 (679)
||++|+|+.....+ ..+|+.+.+.|.++|++||+..
T Consensus 410 E~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 410 ELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99999999999999 5788888888999999999964
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-10 Score=119.85 Aligned_cols=216 Identities=15% Similarity=0.177 Sum_probs=146.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhcCC---C--chhHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHh
Q 005754 422 RKHESLNTLRVFQVIAASLLSGIMWWHS---D--FREVQD----RLGLFFFISVFWGVLPSVNAVFA-FPQERAIFMKER 491 (679)
Q Consensus 422 ~r~~~~~~~r~~~~i~~~ll~G~~f~~~---~--~~~~~~----r~g~lf~~~~~~~~~~~~~~i~~-f~~er~v~~rE~ 491 (679)
.|++.....-+.+-+++.+++|.++-+. + ..+... -.|.+.+.....+.. .+... .-.|+.++.|=+
T Consensus 7 ~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~ 83 (236)
T TIGR01247 7 IRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF---SGISVIWDRQFGFLKEIL 83 (236)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHhCHHHHHH
Confidence 4555555556677777777777766431 1 111111 123333222222211 11111 112333333333
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 005754 492 ASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTI 571 (679)
Q Consensus 492 ~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~ 571 (679)
..=-+...|+++|.+.+++..++..+++..+.+++.+++. ..++..++..++..++..++|.++++..++.+.++.+
T Consensus 84 -~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i 160 (236)
T TIGR01247 84 -VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQII 160 (236)
T ss_pred -hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333678999999999999999999999999888877553 3455555556666778899999999999999999999
Q ss_pred HHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCcccccccccCC
Q 005754 572 VTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQ 649 (679)
Q Consensus 572 ~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~~~~~~~~~~~ 649 (679)
.+++..+++.+||.+.| .+|+|++|+.+++|++|+.|++-..-.++. + .
T Consensus 161 ~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~----------------~-------------~ 211 (236)
T TIGR01247 161 MSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS----------------P-------------T 211 (236)
T ss_pred HHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC----------------c-------------c
Confidence 99999999999999998 899999999999999999998654322221 0 0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHH
Q 005754 650 ISPLVSIGAFLSMFVGYRLLAYL 672 (679)
Q Consensus 650 ~~~~~~~~iL~~~~~~f~~l~~~ 672 (679)
.+.+.++++++++.+++.+++..
T Consensus 212 ~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 212 FPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 14556788888888888877754
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.7e-12 Score=127.36 Aligned_cols=139 Identities=20% Similarity=0.236 Sum_probs=89.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC-cCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR-LHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~-~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
++.+.+|+++.+++|++++|.||||+||||+|+++++. +.+ ..|..... .. -.++|..|- +..+..
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la---~~G~~v~a-~~------~~~~~~~~i---~~~~~~ 83 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMA---QIGSFVPA-SS------ATLSIFDSV---LTRMGA 83 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHH---hCCCEEEc-Cc------eEEeccceE---EEEecC
Confidence 35789999999999999999999999999999999993 332 23432221 11 112332221 111111
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccC--HHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGIS--GGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
.|++. .++| ..|-+|++-...-+.+|+++|+|||.+
T Consensus 84 ~d~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~ 121 (222)
T cd03287 84 SDSIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGR 121 (222)
T ss_pred ccccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCC
Confidence 11110 0111 123444444444567899999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHhC-CcEEEEEeCCccHHHHHhC
Q 005754 247 GLDSTAAYRL-VSTLGSLVQR-GKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 247 gLD~~~~~~i-~~~L~~l~~~-g~tii~~tH~~~~~i~~~~ 285 (679)
|.|+.....+ ...++.+.+. +.++|++||++. +.++.
T Consensus 122 gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 122 GTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred CCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 9998777775 5677788776 899999999964 44444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-13 Score=140.08 Aligned_cols=174 Identities=26% Similarity=0.343 Sum_probs=120.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCC--eeeEEEE------CCCCccccccC------cEEEEecCCCCCC---
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHG--LTGTILT------NNNKPTKHISK------RTGFVTQDDILYP--- 164 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~--~~G~i~~------~g~~~~~~~~~------~i~yv~Q~~~l~~--- 164 (679)
+||++.+++|.||-||||-|++++|..+|.-| ..+-.+- .|.+....+.+ +.-.=||.-..+|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999887432 1110000 01100000000 0000122111111
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
..+|.+++. ....++..+++++.+.|.+..++-+ ..|||||-||.+||.+-+.+.++.++|||
T Consensus 178 k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 123444332 2223335677888888887665544 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
.+-||...+..-...++.+...++=||++.||.+- +--+.|-+..|..
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 99999999999999999999889999999999763 4556788887763
|
|
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=120.37 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=122.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005754 497 TLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIMDAKQASTIVTVTM 576 (679)
Q Consensus 497 ~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~~~~~A~~~~~~~~ 576 (679)
+...++++|++..++..+++.+++..+.|++.|++.. .++.+++++++..++..++|.++++++++...+. +.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4567899999999999999999999999999999864 5667777778888899999999999998765444 33445
Q ss_pred HHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCcccccccccCCCCchH
Q 005754 577 LAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISPLV 654 (679)
Q Consensus 577 ~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~~~~~~~~~~~~~~~~ 654 (679)
.+.++++|.+.| .+|.|++|+.|++|++|+.+++-...+.+.. .+.|.
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~~------------------------------~~~~~ 183 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGND------------------------------GTLWQ 183 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCcH------------------------------HHHHH
Confidence 566677888888 9999999999999999999999766554310 14577
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 655 SIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 655 ~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
++++++++.+++.++++...|+-|
T Consensus 184 ~~~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 184 AVAVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888999999999999999988765
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-12 Score=116.63 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=58.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.+... ..++.+++++|+ ++. -
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-I 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-h
Confidence 56899999999999999999999999999999986 4568888876532 345567777777 443 5
Q ss_pred CHHHHHHH
Q 005754 167 TVRETLVF 174 (679)
Q Consensus 167 TV~E~l~~ 174 (679)
|++|||.+
T Consensus 70 ti~~Ni~~ 77 (107)
T cd00820 70 RLRLNIFL 77 (107)
T ss_pred hHHhhcee
Confidence 99999986
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-12 Score=143.97 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=70.2
Q ss_pred cccCHHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 216 RGISGGERKRVSIAHEMLIN----PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~----P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+.+||||+||++||++++.. |+++|+||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999974 45789999999
Q ss_pred eCCe
Q 005754 292 SEGR 295 (679)
Q Consensus 292 ~~G~ 295 (679)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=129.09 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=113.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc---c---------ccccCcEEEEec
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP---T---------KHISKRTGFVTQ 158 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~---~---------~~~~~~i~yv~Q 158 (679)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. . ..+++.+.+|.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4689999 999999999999999999999999999988763 57777755432 1 124567888887
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH-HHHhhCCC
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA-HEMLINPS 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA-~aL~~~P~ 237 (679)
.+.-. -.+....+.+ .. +.|.+..-|- |.++- ...++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a-------------~~-iAEyfr~~g~----~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA-------------TA-IAEYFRDQGL----NVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH-------------HH-HHHHHHHCCC----cEEEE---EeChH-----HHHHHHHHHH----
Confidence 54321 0111111111 01 1222222232 11111 00111 11111 1111
Q ss_pred eEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 238 LLILDEP--TSGLDSTAAYRLVSTLGSLVQ--RGK-----TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 238 lllLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.+.|| |+|+|+.....+.+.++++.+ +|. ||++.+||..+ .+||++..+.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 789999999999999999974 575 99999999763 7899999999999999998765
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.1e-12 Score=147.78 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=63.3
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
+.+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. +++.+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 46999999999999988 8999999999999999999998864 677787789999999999542 33344444433 45
Q ss_pred eEEE
Q 005754 295 RCLY 298 (679)
Q Consensus 295 ~iv~ 298 (679)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 5544
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-11 Score=134.77 Aligned_cols=138 Identities=24% Similarity=0.391 Sum_probs=105.6
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV------MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+..|++.|.+.|...+.+... ........+.++ |..+||.-. -.++...+|||||.||+-||..+-++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YL----tL~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYL----TLSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcc----cccccCCCcChhHHHHHHHHHHhcccc
Confidence 345788888888766543211 111112222333 334577643 224566789999999999999998775
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHHH
Q 005754 237 --SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAMS 307 (679)
Q Consensus 237 --~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 307 (679)
=+++||||+.||-+..-+.+++.|++|++.|-|+|++.||+ +....+|+|+-| ..|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 47799999999999999999999999999999999999995 478899999998 4689999999999874
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-12 Score=127.21 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 005754 222 ERKRVSIAHEMLINPSLLILDEPT-----SGLDSTAAYRLVSTLGSLVQ 265 (679)
Q Consensus 222 erqRv~IA~aL~~~P~lllLDEPt-----sgLD~~~~~~i~~~L~~l~~ 265 (679)
|++++.||++++.+|+++++|||| +|||+.+++.+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=139.29 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=69.8
Q ss_pred cccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 216 RGISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +..++|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 699999999984 56899999999
Q ss_pred eCCe
Q 005754 292 SEGR 295 (679)
Q Consensus 292 ~~G~ 295 (679)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8743
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=149.56 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=74.8
Q ss_pred CccCcccCHHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHH
Q 005754 212 NSFIRGISGGERKRVSIAHEMLI----------NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV 281 (679)
Q Consensus 212 ~~~~~~LSgGerqRv~IA~aL~~----------~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i 281 (679)
++.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|++|||++. ..
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~ 1023 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FR 1023 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HH
Confidence 34577899999999999999986 79999999999999999999999999999888999999999965 57
Q ss_pred HHhCCeEEEEeCC
Q 005754 282 YQMFDKVLVLSEG 294 (679)
Q Consensus 282 ~~~~D~v~lL~~G 294 (679)
..++|+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 8899999999753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-11 Score=140.91 Aligned_cols=79 Identities=32% Similarity=0.457 Sum_probs=70.0
Q ss_pred cCcccCHHHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHH
Q 005754 214 FIRGISGGERKRVSIAHEML----------INPSLLILDEPT-SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVY 282 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~----------~~P~lllLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~ 282 (679)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 35689999999999999887 599999999998 789999999999999998 5899999999964 56
Q ss_pred HhCCeEEEEeC-CeE
Q 005754 283 QMFDKVLVLSE-GRC 296 (679)
Q Consensus 283 ~~~D~v~lL~~-G~i 296 (679)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 554
|
|
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.3e-09 Score=108.56 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=148.9
Q ss_pred HHHHHHHHHHH-ccC-chhHHHHHHHHHHHHHHHHHHhcCC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q 005754 411 FSILLHRSLKE-RKH-ESLNTLRVFQVIAASLLSGIMWWHS-DF-REVQDRLGLFFFISVFWGVLPSVNAVF-----AFP 481 (679)
Q Consensus 411 ~~~L~~R~~~~-~r~-~~~~~~r~~~~i~~~ll~G~~f~~~-~~-~~~~~r~g~lf~~~~~~~~~~~~~~i~-----~f~ 481 (679)
...+.+|.++. +|+ +......+++-++.-+++|..+-.. +. .+ .+. .-|+.....++..+.++.. .+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y--~~f~~pg~l~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSY--AAFLAAGMVATSAMTASTFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566898865 465 4555566777777777777776432 11 11 111 1122111111111111111 111
Q ss_pred H--hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 482 Q--ERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALG 559 (679)
Q Consensus 482 ~--er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~is 559 (679)
. |+..+.|-+..-. ++..+.+||++.+.-..++..++...+.++ .|..+. ......+.++++..++..++|+++|
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2333333333333 778999999999987777777665555443 344433 3344444555667777789999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCcccc
Q 005754 560 AIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDA 637 (679)
Q Consensus 560 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~ 637 (679)
++.++.+.+..+..+++.+++.+||.+.| .+|.|++|+.+++|+.|+.|++=..-+++.
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------------------- 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------------------- 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-------------------
Confidence 99999999999999999999999999988 999999999999999999998654422221
Q ss_pred CcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 005754 638 SCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRL 677 (679)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i 677 (679)
. .+.|.++++++++.+++..++....|+-
T Consensus 222 ---~--------~~~~~~~~~l~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 222 ---G--------TQVGLHLGALCLYAVVPFFISAALLRRR 250 (253)
T ss_pred ---c--------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0335567788888888888888777663
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-12 Score=128.95 Aligned_cols=177 Identities=17% Similarity=0.229 Sum_probs=105.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeE--EEECCCCcc--ccccC---cEEEEecCCCCCCCCCH---
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGT--ILTNNNKPT--KHISK---RTGFVTQDDILYPHLTV--- 168 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~--i~~~g~~~~--~~~~~---~i~yv~Q~~~l~~~lTV--- 168 (679)
+.+.+||.++|+||+|+|||||++.|++....... ... +.+-+++.. .++.+ .+-.+.+-+. .+...+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f-dv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~ 88 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP-EVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVA 88 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccC-CeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHH
Confidence 46789999999999999999999999997754211 122 221222111 11211 1222333222 111000
Q ss_pred HHHHHHHhhhcC-CCC----CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH--------HHHHHHHHHHhhC
Q 005754 169 RETLVFCSLLRL-PRT----LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE--------RKRVSIAHEMLIN 235 (679)
Q Consensus 169 ~E~l~~~~~~~~-~~~----~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--------rqRv~IA~aL~~~ 235 (679)
+.-+..+..++. ... ++. ..+..+..+.+ .+ ...+.+|||| +||+++||++..+
T Consensus 89 ~~~~~~a~~~~~~G~~vll~iDe---i~r~a~a~~ev---------~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~ 155 (249)
T cd01128 89 EMVLEKAKRLVEHGKDVVILLDS---ITRLARAYNTV---------VP-PSGKILSGGVDANALHKPKRFFGAARNIEEG 155 (249)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEC---HHHhhhhhhhc---------cc-cCCCCCCCCcChhhhhhhHHHHHHhcCCCCC
Confidence 011111111100 000 000 01111112222 22 2344589999 9999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 236 PSLLILDEPTSGLDSTAAYR-LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+|.|.+|+.|++
T Consensus 156 gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 156 GSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred CceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 999999 999999755544 54 5666556889999999965 4688999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=121.58 Aligned_cols=64 Identities=25% Similarity=0.490 Sum_probs=54.6
Q ss_pred CcccCHHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 215 IRGISGGERKRVSIAHEMLINP---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~~~P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
...+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3457999999999998888777 899999999999999999999999988777889999999974
|
|
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-08 Score=106.06 Aligned_cols=232 Identities=16% Similarity=0.190 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHH-ccCchhHHHHHHHHHHHHHHHHHHhcCC-Cc------hhH-----HHHHHHHHHHHHHHHHHHHHH
Q 005754 409 NQFSILLHRSLKE-RKHESLNTLRVFQVIAASLLSGIMWWHS-DF------REV-----QDRLGLFFFISVFWGVLPSVN 475 (679)
Q Consensus 409 ~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~~f~~~-~~------~~~-----~~r~g~lf~~~~~~~~~~~~~ 475 (679)
++++.+++|.++. .|++.....-+++-++.-+++|.+|-.. +. .+. .--.|.+-+...+.++. .
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~---~ 78 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ---S 78 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---h
Confidence 6789999999886 5766666667788888888888877431 10 110 11112222222211111 1
Q ss_pred HHH-HHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 005754 476 AVF-AFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGL 554 (679)
Q Consensus 476 ~i~-~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~ 554 (679)
+.. ..-.|+..+.+=+.... +...+.++|++..+-..+++.+++.++.+. .|.+.....++.....+++..+...++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 11122334444444444 778899999999988888877665555443 366555444444444555566778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CC---hhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCC
Q 005754 555 GLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KM---PSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFD 629 (679)
Q Consensus 555 g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~i---p~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~ 629 (679)
|.++|+++++.+.+..+.++++.+++..+|.+.+ .+ |.|++|+.+++|+.|..|++=.. +.+.
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~----------- 224 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ----------- 224 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC-----------
Confidence 9999999999999998888888899999998866 44 88999999999999999877532 2110
Q ss_pred CCCCccccCcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 630 RHGSSRDASCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 630 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
..|..+.+++++.+++..++....|+-+
T Consensus 225 ---------------------~~~~~~~~~~~~~~v~~~~~~~~fr~~~ 252 (253)
T TIGR03861 225 ---------------------LNLPALGWTLGATTLFTLLAFWGFDPQH 252 (253)
T ss_pred ---------------------cchhHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1144556777888888888888777643
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=117.87 Aligned_cols=135 Identities=24% Similarity=0.276 Sum_probs=89.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.+-+|+++..++|++++|.||||+||||+++++++..-.. .. |-..... ...++++ +.++..+...
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la--~~------G~~vpa~-~~~i~~~---~~i~~~~~~~ 83 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA--QM------GMDVPAK-SMRLSLV---DRIFTRIGAR 83 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH--Hc------CCccCcc-ccEeccc---cEEEEecCcc
Confidence 467899999999999999999999999999999999853210 01 1111110 0112211 2222222222
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH--HHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG--GERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
|++.. ++|. -|-+|++-....+.+|+++|+|||.+|
T Consensus 84 d~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 84 DDIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred ccccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 22211 0111 234444444444578999999999999
Q ss_pred CCHHHHHHHHHH-HHHHHhC-CcEEEEEeCCcc
Q 005754 248 LDSTAAYRLVST-LGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 248 LD~~~~~~i~~~-L~~l~~~-g~tii~~tH~~~ 278 (679)
+|+.....+... ++.+.+. +.++|++||++.
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 999999999888 7788775 899999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=116.56 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=92.1
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005754 100 MVSPGEILAILGPSGSGKSTM-LNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTL-L~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~ 178 (679)
-+++|++++|.|+|||||||| ++.+.+..+++ .++.|+..+ .|..+.+.....+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-------------------~~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-------------------YSVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-------------------CcEEEEeCC------CCHHHHHHHHHHh
Confidence 379999999999999999999 78988865421 113444421 3555555443322
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCC----CH
Q 005754 179 RLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML----INPSLLILDEPTSGL----DS 250 (679)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgL----D~ 250 (679)
.. . .++.... + ... +.+.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+
T Consensus 75 g~--~---------~~~~~~~-~--~l~---~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~ 136 (230)
T PRK08533 75 GY--D---------INKKLIS-G--KLL---YIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASE 136 (230)
T ss_pred CC--c---------hHHHhhc-C--cEE---EEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcch
Confidence 21 0 0111110 0 000 00001 136777665555544333 369999999999999 88
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCccH------HHHHhCCeEEEEe
Q 005754 251 TAAYRLVSTLGSLVQRGKTIVTSMHQPSS------RVYQMFDKVLVLS 292 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~g~tii~~tH~~~~------~i~~~~D~v~lL~ 292 (679)
.....+.+.+++++++|.|+++++|+... .+..++|-|+.|+
T Consensus 137 ~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 137 VAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 88899999999998888888777664320 0133557777775
|
|
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-08 Score=103.78 Aligned_cols=220 Identities=16% Similarity=0.169 Sum_probs=138.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhcCCC-chhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHhcCCCCC
Q 005754 422 RKHESLNTLRVFQVIAASLLSGIMWWHSD-FREVQD-RLGLFFFISVFWGVLPSVNAVFAFPQER--AIFMKERASGMYT 497 (679)
Q Consensus 422 ~r~~~~~~~r~~~~i~~~ll~G~~f~~~~-~~~~~~-r~g~lf~~~~~~~~~~~~~~i~~f~~er--~v~~rE~~~g~Y~ 497 (679)
.|+|.....-+.+.+++-++.+.+|-+.. .+..+. -.|.+-+..++ .+....-.....|| ..+.|=+..-. +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSVTHNRGATFIPVLMALAAIS---TAFTGQAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCccCCcchhHhhHHHHHHHHHH---HHHHHHHHHHHHHHHhCHHHHHhcCCC-c
Confidence 35666555555666666666666665421 111211 12222222221 11122222333443 35555554444 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 005754 498 LSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALGAIIM---DAKQASTIVTV 574 (679)
Q Consensus 498 ~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~isa~~~---~~~~A~~~~~~ 574 (679)
+..|+++|++..++..++..+++. +++++.|++.....+ ..+..+++..+.+.+++.+++++.+ +.+.+..++.+
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999998888777655554 556677887653322 3333344444556677777777764 55555788888
Q ss_pred HHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCcccccccccCCCCc
Q 005754 575 TMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEEDIVGQISP 652 (679)
Q Consensus 575 ~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~~~~~~~~~~~~~~ 652 (679)
+..+++++||.+.| .+|.|++|+.+++|++|+.+++-..-..+. +....
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~-----------------------------~~~~~ 206 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV-----------------------------DTFGA 206 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC-----------------------------ChhhH
Confidence 88999999999998 999999999999999999998654322211 01245
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 005754 653 LVSIGAFLSMFVGYRLLAYLALRR 676 (679)
Q Consensus 653 ~~~~~iL~~~~~~f~~l~~~~L~~ 676 (679)
|.++++++++.+++..++....||
T Consensus 207 ~~~~~~l~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 207 VRDLVVVLAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678888888888888888777665
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-10 Score=109.74 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=56.2
Q ss_pred ccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 210 vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
.|.+..+..|.||-=---+.+. .++.-+++||||-++|.|.-+..++..|+++++.|.-+|+.||.|-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred cCCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 3444556789999755444443 3567899999999999999999999999999999999999999974
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.9e-10 Score=109.06 Aligned_cols=80 Identities=20% Similarity=0.101 Sum_probs=65.8
Q ss_pred ccCcccCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEeCCccH----
Q 005754 213 SFIRGISGGERK------RVSIAHEMLINPSLLILDEPTSGLD---STAAYRLVSTLGSLVQRGKTIVTSMHQPSS---- 279 (679)
Q Consensus 213 ~~~~~LSgGerq------Rv~IA~aL~~~P~lllLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tii~~tH~~~~---- 279 (679)
..+..+|+||+| +.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+...
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence 345578999998 4444555667999999999999999 888888999999998889999999998643
Q ss_pred ----HHHHhCCeEEEEe
Q 005754 280 ----RVYQMFDKVLVLS 292 (679)
Q Consensus 280 ----~i~~~~D~v~lL~ 292 (679)
.+..++|.++.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 2567899999887
|
A related protein is found in archaea. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.5e-11 Score=114.53 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=64.7
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILDEP--TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
..+||+|+-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|.++|+++|+. .+...+|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 35999999999999999999999999995 43444 445666777666799999999983 35678999999999
Q ss_pred CeEEEec
Q 005754 294 GRCLYFG 300 (679)
Q Consensus 294 G~iv~~G 300 (679)
|++...-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997764
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-10 Score=137.55 Aligned_cols=78 Identities=28% Similarity=0.352 Sum_probs=69.0
Q ss_pred cCcccCHHHHHH------HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCe
Q 005754 214 FIRGISGGERKR------VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDK 287 (679)
Q Consensus 214 ~~~~LSgGerqR------v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~ 287 (679)
.+..|||||+++ ++||++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 467899999994 5556678899999999999999999999999999999877788999999996 36789999
Q ss_pred EEEEeC
Q 005754 288 VLVLSE 293 (679)
Q Consensus 288 v~lL~~ 293 (679)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
|
|
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-07 Score=97.78 Aligned_cols=237 Identities=13% Similarity=0.119 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHc-cCchh-HHHHHHHHHHHHHHHHHHhcCC-Cc-hhH--HH--HHHHHHHHHHHHHHHHHHHHHH
Q 005754 407 WLNQFSILLHRSLKER-KHESL-NTLRVFQVIAASLLSGIMWWHS-DF-REV--QD--RLGLFFFISVFWGVLPSVNAVF 478 (679)
Q Consensus 407 ~~~Q~~~L~~R~~~~~-r~~~~-~~~r~~~~i~~~ll~G~~f~~~-~~-~~~--~~--r~g~lf~~~~~~~~~~~~~~i~ 478 (679)
.|+-++.+.+|.++.. |+... ...-+++.++..+++|.++-.. +. .+. .. -.|.+-+.....+.. .+..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~---~~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYS---NVAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3567888999998864 43322 2334455555666666654321 11 111 11 113332222221111 1122
Q ss_pred HHHHhhHH-HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 479 AFPQERAI-FMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLA 557 (679)
Q Consensus 479 ~f~~er~v-~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~ 557 (679)
.+..+|.. ..++...---+...+.+++++...-..++..++..++.+...|.+... ...++..+++..++....|.+
T Consensus 83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~ 160 (257)
T PRK15066 83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLI 160 (257)
T ss_pred HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 22233311 112212223477889999999887776776666655555444665432 223333333333333445888
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCcc
Q 005754 558 LGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSR 635 (679)
Q Consensus 558 isa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c 635 (679)
+|.+.++.+.+..+.++++.+++..+|.+.| ++|.|++|+.+++|+.|..|++=..-+.+.
T Consensus 161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~~----------------- 223 (257)
T PRK15066 161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGIS----------------- 223 (257)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCCC-----------------
Confidence 8888999988899999999999999998888 899999999999999999998753322110
Q ss_pred ccCcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 636 DASCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
....|.++++++++.+++.+++....|+-+
T Consensus 224 -------------~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 224 -------------DVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred -------------CccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 013467888899999999999988888754
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-10 Score=136.36 Aligned_cols=80 Identities=29% Similarity=0.249 Sum_probs=69.7
Q ss_pred ccCcccCHHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 213 SFIRGISGGERKRVSIAHEMLI--------NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~~--------~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
+.+++|||||++|++||++|+. +|++||+||||+|||+.+...+++.|..+.+.|+||+++||.. ....++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4577899999999999999996 8999999999999999999999999999998899999999974 334555
Q ss_pred CCeEEEEeC
Q 005754 285 FDKVLVLSE 293 (679)
Q Consensus 285 ~D~v~lL~~ 293 (679)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 666666654
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-10 Score=118.68 Aligned_cols=143 Identities=14% Similarity=0.199 Sum_probs=93.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHHHHHHHH
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVRETLVFC 175 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 175 (679)
+++.+++|+.++|.||+|||||||+++|++.++++ .+.+.+....... .....+.++.+...-
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied~~El~~~~~~~~~l~~~~~~~------------- 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIEDTREIFLPHPNYVHLFYSKGGQ------------- 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcCccccCCCCCCEEEEEecCCCC-------------
Confidence 56788899999999999999999999999998753 3445553211000 001122222211000
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 005754 176 SLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255 (679)
Q Consensus 176 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~ 255 (679)
+ ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 201 -------------------------~-------------~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 201 -------------------------G-------------LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -------------------------C-------------cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 000111 1134456778999999999996 34
Q ss_pred HHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 256 i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+.+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56667766643456799999976 45679999999999998888877765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.5e-09 Score=123.05 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=64.5
Q ss_pred hhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHH--------HHHhCCeEEEEeCCeEEEecChh
Q 005754 233 LINPSLLILDEPTSGL-DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSR--------VYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 233 ~~~P~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~--------i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||++... +.+.||++++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 79999999999999998899999999998642 1368999999999998766633
Q ss_pred hHHHHHHHcCC
Q 005754 304 EAMSYFESVGF 314 (679)
Q Consensus 304 ~~~~~f~~~g~ 314 (679)
++++..|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455553
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=101.58 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=48.2
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTS----------GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.+.++.++...+++...+|+++++|||++ +.|......+.+++..+.+.+.|+|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45666677888888999999999999994 455555666666666665569999999998754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-09 Score=129.93 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=67.0
Q ss_pred cCcccCHHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-cEEEEEeCCccHHHHHh
Q 005754 214 FIRGISGGERKRVSI------AHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QR-G-KTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 214 ~~~~LSgGerqRv~I------A~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tii~~tH~~~~~i~~~ 284 (679)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.|+... .. | .|||++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 489999999999999999999999999999998654 33 3 48999999964 5689
Q ss_pred CCeEEEEe
Q 005754 285 FDKVLVLS 292 (679)
Q Consensus 285 ~D~v~lL~ 292 (679)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.7e-09 Score=115.63 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=107.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.+...|+.. .+|+|
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGerg--------------------~ev~e 199 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGERG--------------------REVKD 199 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCCc--------------------ccHHH
Confidence 4577775 999999999999999999999999999987653 45555544321 46666
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-------hCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-------INPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-------~~P~lllLDE 243 (679)
.+.... ..-|+.+. ..+ .....-|.|+|+|+..+.+.+ .++-++++||
T Consensus 200 ~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 200 FIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 554211 11122110 111 123468999999999998877 6899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
||++.|+. .++-..+.+....|.+..+.+|.+ .+.+-+ -...+|.+...+.
T Consensus 255 lTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L~ERa---g~~~~GSiT~~~t 305 (432)
T PRK06793 255 VTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KLLERS---GKTQKGSITGIYT 305 (432)
T ss_pred hHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hHHHHh---ccCCCcceEEEEE
Confidence 99999996 555556666654588888888842 344433 3357888866554
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=102.01 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=94.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhc-CcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHh
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAG-RLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCS 176 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G-~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 176 (679)
.+=+++|.++.|.|++|+|||||...++- ..+. .+.+.|+..+ -+..+.+.-..
T Consensus 19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-------------------g~~~~y~~~e------~~~~~~~~~~~ 73 (234)
T PRK06067 19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-------------------GKKVYVITTE------NTSKSYLKQME 73 (234)
T ss_pred CCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-------------------CCEEEEEEcC------CCHHHHHHHHH
Confidence 45689999999999999999999988752 1211 1123444432 12333332211
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh--CCCeEEEeCCCCC---CCHH
Q 005754 177 LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEPTSG---LDST 251 (679)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~--~P~lllLDEPtsg---LD~~ 251 (679)
.+.. . - ++.+. -|.-...+.... .....|.++++.+.....++. +|+++++||||+. +|..
T Consensus 74 ~~g~--~--~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~ 139 (234)
T PRK06067 74 SVKI--D--I-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEED 139 (234)
T ss_pred HCCC--C--h-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHH
Confidence 1111 0 0 00000 011011010000 112356788999999999998 8999999999964 5555
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccH------HHHHhCCeEEEEeC
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSS------RVYQMFDKVLVLSE 293 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~------~i~~~~D~v~lL~~ 293 (679)
....+++.++.++++|.|+++++|+... .+..++|-++.|+.
T Consensus 140 ~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 140 DILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5566666677777789999999998642 14566777777763
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-09 Score=132.10 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=67.7
Q ss_pred ccCcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE
Q 005754 213 SFIRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v 288 (679)
..+..||||||+|++||++++ .+|+++||||||+|||+.+...+.+.|+.+++ +.+||++||++. ....||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhH
Confidence 356789999999999999985 56799999999999999999999999999875 478999999975 45789999
Q ss_pred EEEe
Q 005754 289 LVLS 292 (679)
Q Consensus 289 ~lL~ 292 (679)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8765
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.8e-09 Score=131.87 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=64.3
Q ss_pred cccccCccCcccCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeC
Q 005754 207 NTIIGNSFIRGISGGERK------RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-----RGKTIVTSMH 275 (679)
Q Consensus 207 ~~~vg~~~~~~LSgGerq------Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~~tH 275 (679)
|+.++ ..+.||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.|||++||
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 44443 23579999999 99999999999999999999999999999999999988742 3789999999
Q ss_pred CccHHHHHhC
Q 005754 276 QPSSRVYQMF 285 (679)
Q Consensus 276 ~~~~~i~~~~ 285 (679)
++. .+..+|
T Consensus 1269 d~~-~~~~~~ 1277 (1311)
T TIGR00606 1269 DED-FVELLG 1277 (1311)
T ss_pred CHH-HHHHHh
Confidence 965 466654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=100.83 Aligned_cols=57 Identities=12% Similarity=0.327 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.|+|.++ ..+..||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 665543333 34567999999999975 346788887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-08 Score=101.96 Aligned_cols=136 Identities=25% Similarity=0.379 Sum_probs=85.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC-CCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPR 182 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g-~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 182 (679)
|++..|+||+|+|||||.--++--.. .|.-+..+ ... .-..++-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va-----~G~~~~g~~~~~--~~~~~Vlyi~~Ed---------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA-----LGKNLFGGGLKV--TEPGRVVYLSAED---------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh-----cCccccCCcccc--CCCceEEEEECCC----------------------
Confidence 67889999999999999987764332 12111111 111 1123455554322
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHH----------------HHhhCCCeEEEeCCCC
Q 005754 183 TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAH----------------EMLINPSLLILDEPTS 246 (679)
Q Consensus 183 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~----------------aL~~~P~lllLDEPts 246 (679)
+..+..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 --~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~ 121 (239)
T cd01125 52 --PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLV 121 (239)
T ss_pred --CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChH
Confidence 22334455666666666544333221 1244555554433 335799999999 765
Q ss_pred ------CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCcc
Q 005754 247 ------GLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 247 ------gLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~ 278 (679)
.+|+.....+++.|++++++ |.|||+++|..-
T Consensus 122 ~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 122 SFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999865 999999999853
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-08 Score=122.13 Aligned_cols=77 Identities=34% Similarity=0.430 Sum_probs=67.1
Q ss_pred CcccCHHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEeCCccHHH
Q 005754 215 IRGISGGERK------RVSIAHEMLIN-----P-SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGK-TIVTSMHQPSSRV 281 (679)
Q Consensus 215 ~~~LSgGerq------Rv~IA~aL~~~-----P-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tii~~tH~~~~~i 281 (679)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 89999988864 3 67999999999999999999999999987664 8999999974 4
Q ss_pred HHhCCeEEEEeC
Q 005754 282 YQMFDKVLVLSE 293 (679)
Q Consensus 282 ~~~~D~v~lL~~ 293 (679)
...+|+++.|.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999974
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-08 Score=126.19 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=68.5
Q ss_pred cCcccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEE
Q 005754 214 FIRGISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVL 289 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~ 289 (679)
.+..||||||++++||++|+. +|++++||||++|||+..+..+.+.|+++++ +.++|++||++. ....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 478999999963 678999998
Q ss_pred EEeC
Q 005754 290 VLSE 293 (679)
Q Consensus 290 lL~~ 293 (679)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8764
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.5e-08 Score=109.40 Aligned_cols=151 Identities=22% Similarity=0.277 Sum_probs=92.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.++++.+..+++|++++++||||+||||++..|++.+... .| .++++++.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~---~G-------------~~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR---HG-------------ASKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh---cC-------------CCeEEEEeCCc---cchhHHHH
Confidence 3566777778899999999999999999999999976421 11 12578888875 34789999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHH-HHHHHHHHhhCC-----CeEEEeCCC
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERK-RVSIAHEMLINP-----SLLILDEPT 245 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~IA~aL~~~P-----~lllLDEPt 245 (679)
|.+.+..... +........+..+...++.+....++. +...+++. .+.-..+++.++ .+|.||.++
T Consensus 305 Lr~~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 305 LRIYGKILGV---PVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 9986654321 111111223334455666665444443 22222322 233444455554 689999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 005754 246 SGLDSTAAYRLVSTLGSLVQRGKTIVTSMH 275 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~g~tii~~tH 275 (679)
.+ ..+.+.++.....+.+=++.|+
T Consensus 377 ~~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 377 HG------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred cH------HHHHHHHHHhccCCCCEEEEeC
Confidence 87 3445555555555555455555
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-07 Score=83.21 Aligned_cols=59 Identities=31% Similarity=0.320 Sum_probs=46.4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCcEEEEEeC
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS------TLGSLVQRGKTIVTSMH 275 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~------~L~~l~~~g~tii~~tH 275 (679)
...+++..+..+.++--.+|.++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 467888888888888877789999999999999998887765 22333345789999998
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-06 Score=88.89 Aligned_cols=165 Identities=24% Similarity=0.305 Sum_probs=121.4
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 005754 483 ERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLALG-AI 561 (679)
Q Consensus 483 er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~is-a~ 561 (679)
++..+.|=..+...+ ..+++++.+.......+...+...+..+..|. .....+..+..++.+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455533 56777777777777666666666666666662 2334455555666667777788888666 36
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccCCCCCCccccCc
Q 005754 562 IMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASC 639 (679)
Q Consensus 562 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~~~~~~~c~~~~ 639 (679)
..+.+.+..++.++..++.+++|.+.| .+|.|++|+.++.|..|+.+++-.....+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------- 253 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------- 253 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc--------------------
Confidence 677888888888999999999999998 8999999999999999999998876554421
Q ss_pred ccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005754 640 KFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRRLK 678 (679)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~i~ 678 (679)
. .+.|.++++++++.+++.+++.+.+|+.+
T Consensus 254 -~--------~~~~~~~~~l~~~~~v~~~~~~~~~~~~~ 283 (286)
T COG0842 254 -N--------DGIWISLLILLLFAVVFLLLGLLLLRRRR 283 (286)
T ss_pred -h--------hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 12677888999999999999999998754
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-08 Score=109.02 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=70.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----------cccCcEEEEecC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----------HISKRTGFVTQD 159 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----------~~~~~i~yv~Q~ 159 (679)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++....|.+..++.+... ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35689999 9999999999999999999999999999887654344666555544321 123468999999
Q ss_pred CCCCCCCCHHHHHHHHhhh
Q 005754 160 DILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~ 178 (679)
...+..+++.|++.+.+..
T Consensus 221 ~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 221 ESPLMRIKATELCHAIATY 239 (434)
T ss_pred CChhhhHHHHHHHHHHHHH
Confidence 9999999999999876654
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-08 Score=110.10 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=43.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP 145 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~ 145 (679)
+++|++||+++++||+++|+|||||||||||+ +|+..|+. .|+|.++|.+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEEC
Confidence 46899999999999999999999999999999 67766532 24799998764
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-06 Score=82.22 Aligned_cols=128 Identities=13% Similarity=0.036 Sum_probs=92.5
Q ss_pred HHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 481 PQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEF--IAFVQTLLVLLGYVLVSQGLGLAL 558 (679)
Q Consensus 481 ~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~--~~f~~f~~~~~l~~~~~~s~g~~i 558 (679)
-.|+..+.|-+..-. +.+.|+++|++...-..+++.++..++.+. .|.+... ...+.++++..+.......++..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888887777 679999999999999999998877777754 4877653 222233333333344445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHH
Q 005754 559 GAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLI 611 (679)
Q Consensus 559 sa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~ 611 (679)
+...++.+..+ ...++++++.+.+|.+.| ++|.|++|+.+++|++|+.+++=
T Consensus 93 a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 93 ALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 55555555433 456677777788888888 99999999999999999999874
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=103.75 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=55.3
Q ss_pred cccCHHHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 216 RGISGGERKRVSIAHEMLI---------NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~---------~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
..+|.||+|++.||..|+. +|+|+|||||+++||+..+..+++.|++. |.+|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3589999999999999999 99999999999999999999999999764 779999999864
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=99.63 Aligned_cols=176 Identities=19% Similarity=0.231 Sum_probs=105.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---------cccCcEEEEecCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---------HISKRTGFVTQDDI 161 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---------~~~~~i~yv~Q~~~ 161 (679)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++.+.-+.+-..+.+... .+++.+.++.+.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~ 229 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ 229 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence 5689999 9999999999999999999999999999887643222222233333211 12233444444332
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH-HHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG-GERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~IA~aL~~~P~lll 240 (679)
++.+-..- + ..... +.+.+...|- |..+- ...|+- -|-+| .|+ +.
T Consensus 230 -----~p~~r~~~-~----------~~a~t-~AE~frd~G~----~Vll~---~DslTr~A~A~R-Eis---------l~ 275 (440)
T TIGR01026 230 -----SPLLRLKG-A----------YVATA-IAEYFRDQGK----DVLLL---MDSVTRFAMAQR-EIG---------LA 275 (440)
T ss_pred -----CHHHHHHH-H----------HHHHH-HHHHHHHCCC----CEEEE---EeChHHHHHHHH-HHH---------Hh
Confidence 12121110 0 00011 1122222232 11111 011221 11122 111 33
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 241 LDEP--TSGLDSTAAYRLVSTLGSLVQRGK-------TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 241 LDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.|| +.|+|+.....+-+++.+....+. ||++.+||..+ .++|++..+.+|+++.++...+
T Consensus 276 ~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 276 AGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred cCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhh
Confidence 5675 559999999999999999876666 88889999643 4789999999999999887665
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-06 Score=102.61 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=54.7
Q ss_pred HHHHHhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHH--hCCeEEEEeCCeEE
Q 005754 228 IAHEMLINPSLLILDEPTSGL-DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQ--MFDKVLVLSEGRCL 297 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~--~~D~v~lL~~G~iv 297 (679)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 577788999999999999999 7999999999999999889999999999764 443 23333333344444
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-09 Score=119.05 Aligned_cols=165 Identities=20% Similarity=0.232 Sum_probs=96.8
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHH--hcCcCCCCCeeeEEEECCCCcccccc---CcEEEEecCCCCCCCCC
Q 005754 94 LNGI-TGMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHGLTGTILTNNNKPTKHIS---KRTGFVTQDDILYPHLT 167 (679)
Q Consensus 94 L~~v-s~~i~~Ge~~allGpnGsGKSTLL~~L--~G~~~~~~~~~G~i~~~g~~~~~~~~---~~i~yv~Q~~~l~~~lT 167 (679)
|+.+ .+=+.+|..+.|.||+|||||||..-+ .|....+ +..+++........+. +..|+-.++..--
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g---e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~---- 82 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD---EPGVFVTFEESPQDIIKNARSFGWDLQKLVDE---- 82 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----
Confidence 4454 457889999999999999999999866 3443311 2233443333222221 2344433321100
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH--HHHhhCCCeEEEeCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA--HEMLINPSLLILDEPT 245 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA--~aL~~~P~lllLDEPt 245 (679)
+++.+ .. ..+.. ..+.+++.+++.+..+. ..+.+|+|++|||.|+ .+|...|+..
T Consensus 83 --g~l~~---~~---~~~~~----~~~~~~~~~~l~~~l~~-----i~~~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 83 --GKLFI---LD---ASPDP----EGQDVVGGFDLSALIER-----INYAIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred --CceEE---Ee---cCchh----ccccccccCCHHHHHHH-----HHHHHHHhCCcEEEEeehhHhhhhcCch------
Confidence 00000 00 00000 01112333444433332 2346999999999999 6666665543
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHH-------H-HHhCCeEEEEe
Q 005754 246 SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSR-------V-YQMFDKVLVLS 292 (679)
Q Consensus 246 sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~-------i-~~~~D~v~lL~ 292 (679)
...+..+.++++.+++.|.|+|+++|++... + ..++|.|+.|+
T Consensus 140 ----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5678889999999988899999999986420 1 45789999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.9e-07 Score=97.43 Aligned_cols=56 Identities=13% Similarity=0.320 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL 291 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL 291 (679)
+++.+|-.+|+++++||+. |+.+....++ .+..|.+++.|+|..+ .....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3566888999999999997 8888865544 3567999999999854 34566777554
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-07 Score=111.19 Aligned_cols=79 Identities=29% Similarity=0.377 Sum_probs=70.4
Q ss_pred ccCcccCHHHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 213 SFIRGISGGERKRVSIAHEML------IN--PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~------~~--P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
+.+..|||||+-.++||.+|+ .+ -+.+||||||..||+.+...++++|.++...+.+|+++||++ ++...
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 367789999999988887764 45 599999999999999999999999999998899999999995 57889
Q ss_pred CCeEEEEeC
Q 005754 285 FDKVLVLSE 293 (679)
Q Consensus 285 ~D~v~lL~~ 293 (679)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999999875
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-08 Score=99.60 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=26.4
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 005754 94 LNGI-TGMVSPGEILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 94 L~~v-s~~i~~Ge~~allGpnGsGKSTLL~~L~ 125 (679)
|+.+ .+-+++|++++|.||+|+|||||...++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 4443 4568999999999999999999988655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.5e-07 Score=99.44 Aligned_cols=75 Identities=25% Similarity=0.282 Sum_probs=62.2
Q ss_pred cccCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC
Q 005754 216 RGISGGERKRVSIAHEML---------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D 286 (679)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|-+|+.| ..+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence 348999999999999998 899999999999999999999999888653 23555555433 4799
Q ss_pred eEEEEeCCeEEE
Q 005754 287 KVLVLSEGRCLY 298 (679)
Q Consensus 287 ~v~lL~~G~iv~ 298 (679)
+++.+.+|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999988753
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5e-07 Score=108.63 Aligned_cols=137 Identities=21% Similarity=0.245 Sum_probs=84.4
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.|-+|+++. +.+.++.|.|||++||||+||.++-..-- ...| .|||=+..- +++.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il--Aq~G-----------------~~VPa~~a~---i~~~d- 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL--AQIG-----------------SFVPAESAR---IGIVD- 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH--HhcC-----------------CceeccceE---ecccC-
Confidence 355667776 66789999999999999999998753210 0011 122211100 00111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh--CCCeEEEeCC---CC
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI--NPSLLILDEP---TS 246 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~--~P~lllLDEP---ts 246 (679)
.+..++|-. +...+++|-=+.....++..|-. +++++|+||| |+
T Consensus 652 -----------------------~I~triga~--------d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 652 -----------------------RIFTRIGAS--------DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred -----------------------eeeeccCcc--------cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 111111211 11223577766666777766654 8999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCe
Q 005754 247 GLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDK 287 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~ 287 (679)
.+|..+ ....+++.+.+. |.+++++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 888433 455666777765 58999999993 57777775
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-07 Score=92.32 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=64.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh-hcCCCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL-LRLPRTL 184 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~~~~~~ 184 (679)
+++|.||||||||||.++|++.+. .+ .+.++++|+.. ..++..+....... ...+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~--~~------------------~~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~-- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG--NP------------------KVVIISQDSYY-KDLSHEELEERKNNNYDHPD-- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--CC------------------CeEEEEecccc-cccccccHHHhccCCCCCCC--
Confidence 579999999999999999999762 11 12334444322 22233332221110 01111
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 185 STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 185 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
....+...+.+..+...+..+.+. ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 58 --~~~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 --AFDFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --cccHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 112233445666665544333332 3477777776555 5678999999999998876
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.3e-07 Score=88.66 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=58.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCC--CCCCCCCHH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDD--ILYPHLTVR 169 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~--~l~~~lTV~ 169 (679)
..+=+.+.+++|+.++|+||||||||||+++|+|.++++ .|.+.+.+..... ..+..++++.|.+ ...+..|+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHH
Confidence 344455678899999999999999999999999998753 5677776543211 1234566666543 346678999
Q ss_pred HHHHHHhhh
Q 005754 170 ETLVFCSLL 178 (679)
Q Consensus 170 E~l~~~~~~ 178 (679)
+.+....+.
T Consensus 91 ~~l~~~lR~ 99 (186)
T cd01130 91 DLLRSALRM 99 (186)
T ss_pred HHHHHHhcc
Confidence 988776543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-06 Score=106.35 Aligned_cols=162 Identities=15% Similarity=0.234 Sum_probs=88.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHh
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCS 176 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 176 (679)
+++..+++++++|+|++|+|||||++.+++.... ...|.+++++...... .. .+-.++... .+..
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~-~~--~~~~~~~~~-------~~~~--- 264 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKS-ME--IYSSANPDD-------YNMK--- 264 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccc-hh--hcccccccc-------cchh---
Confidence 4567788999999999999999999999887653 3467887765321110 00 000000000 0000
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 005754 177 LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256 (679)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i 256 (679)
....++.+.++++..++. +. .+ ++.|+| |..++-+|+||+- |.. ..
T Consensus 265 ---------~~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~------L~~krvLLVLDdv----~~~---~~ 310 (1153)
T PLN03210 265 ---------LHLQRAFLSEILDKKDIK------IY-----HL-GAMEER------LKHRKVLIFIDDL----DDQ---DV 310 (1153)
T ss_pred ---------HHHHHHHHHHHhCCCCcc------cC-----CH-HHHHHH------HhCCeEEEEEeCC----CCH---HH
Confidence 001122334444443331 11 12 556665 3355567889984 433 33
Q ss_pred HHHHHHHH---hCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhHHHHHHHcCC
Q 005754 257 VSTLGSLV---QRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314 (679)
Q Consensus 257 ~~~L~~l~---~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~ 314 (679)
++.|.... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|....+
T Consensus 311 l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 311 LDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 44444432 358999999999542 3222 566655531 144678888876544
|
syringae 6; Provisional |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-06 Score=110.03 Aligned_cols=60 Identities=30% Similarity=0.385 Sum_probs=53.3
Q ss_pred cCcccCHHHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 214 FIRGISGGERKRVS----IAHE--------MLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 214 ~~~~LSgGerqRv~----IA~a--------L~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
...+||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 35789999999996 5644 45899999999999999999999999999888 7899999987
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-05 Score=94.05 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHhhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 231 EMLINPSLLILDEPTSGLD-STAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 231 aL~~~P~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..++++||++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999999889999999999754
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-06 Score=85.81 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=43.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--ccc-CcEEEEecCCCCCCCCCHHHHHHH
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HIS-KRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~-~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
+||+++|+|+||||||||+++|+|++.+ +.++|.+... ..+ ...|+.+|+...++..++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998764 3556554322 111 234566666544455555555443
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.8e-05 Score=89.92 Aligned_cols=46 Identities=28% Similarity=0.273 Sum_probs=42.3
Q ss_pred hhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 233 LINPSLLILDEPTSGLD-STAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999888999999999975
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.7e-06 Score=93.12 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=55.8
Q ss_pred Cccccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC---CCccc--------ccc
Q 005754 83 GSTAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN---NKPTK--------HIS 150 (679)
Q Consensus 83 ~~~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g---~~~~~--------~~~ 150 (679)
++++.+ .+..+++.++ .+.+||.++|+||||+||||||++|+++.+++ .|.+...| .+... ..+
T Consensus 144 ~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~~~~~l~~~r~ 219 (450)
T PRK06002 144 RVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREFLEDTLADNLK 219 (450)
T ss_pred cceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHHhHHHHHHhhC
Confidence 334444 2356888886 89999999999999999999999999988764 56776654 33211 123
Q ss_pred CcEEEEecCCC
Q 005754 151 KRTGFVTQDDI 161 (679)
Q Consensus 151 ~~i~yv~Q~~~ 161 (679)
+.+++|+|.+.
T Consensus 220 rtI~vV~qsd~ 230 (450)
T PRK06002 220 KAVAVVATSDE 230 (450)
T ss_pred CeEEEEEcCCC
Confidence 57999999875
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.4e-05 Score=78.11 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=33.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-..|+++.+-+.+|+++.|.|++|+|||||+..++...
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789988899999999999999999999998887643
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-06 Score=67.75 Aligned_cols=37 Identities=41% Similarity=0.646 Sum_probs=29.7
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 94 LNGITGMVSP-GEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 94 L~~vs~~i~~-Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+++.++++.+ |+++.|.|||||||||||++|.=.+.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3456677775 569999999999999999999865543
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.1e-06 Score=71.46 Aligned_cols=49 Identities=35% Similarity=0.408 Sum_probs=37.7
Q ss_pred cCcccCHHHH-HHHHHHHHH------hh------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 005754 214 FIRGISGGER-KRVSIAHEM------LI------NPSLLILDEPTSGLDSTAAYRLVSTLGS 262 (679)
Q Consensus 214 ~~~~LSgGer-qRv~IA~aL------~~------~P~lllLDEPtsgLD~~~~~~i~~~L~~ 262 (679)
..+++||||| ..+.++.++ -. .|.+++||||+++||+..+..+++.|++
T Consensus 29 ~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 29 SFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred cCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3567999999 555544433 22 3689999999999999999999999874
|
|
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0023 Score=66.03 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---hhhhchhcccc--ccchHHHHHHHHHHHHHHHHHH
Q 005754 485 AIFMKERASGMY--------TLSSYFMSRIIGDLPVELILPT---VFLIIIYWMTG--FKPEFIAFVQTLLVLLGYVLVS 551 (679)
Q Consensus 485 ~v~~rE~~~g~Y--------~~~ay~la~~l~~lp~~~~~~~---if~~i~Y~~~g--l~~~~~~f~~f~~~~~l~~~~~ 551 (679)
..+.+||++|.. +...+.++|.++-+-..++..+ ++....++... -..+...++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 345556666543 4578999999988755443332 12222221111 1124555555555556667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcc-cCCC--hhhhhhhhccCHHHHHHHHHHHHHhCCCcccccccccC
Q 005754 552 QGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYY-VHKM--PSCIAWIKYISSTYYNYRLLINVQYGDGKKISYLLGCF 628 (679)
Q Consensus 552 ~s~g~~isa~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~W~~yiSp~~Ya~~al~~nef~~~~~~~~~~~C~ 628 (679)
.++|.++|+++.+...|..++..+... ++.|+- +.++ |.+.+|+.|+||..|-.+.. ++. +
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g~------i--- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHYESIS-----RGV------I--- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHHHHHH-----cCc------c---
Confidence 899999999999988887655433222 222321 2344 88999999999977754422 110 0
Q ss_pred CCCCCccccCcccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 005754 629 DRHGSSRDASCKFVEEDIVGQISPLVSIGAFLSMFVGYRLLAYLALRR 676 (679)
Q Consensus 629 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~ 676 (679)
.+.++.+.+.+.+.+..++...+++
T Consensus 215 -----------------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 -----------------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred -----------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1345667777777888777776653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=72.84 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeCCcc
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-----RGKTIVTSMHQPS 278 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~~tH~~~ 278 (679)
++..........++.++++||.-.. ++.....+.+.+..+.. .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444445566778999999998765 66677788888888753 4788999988643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0014 Score=68.43 Aligned_cols=201 Identities=15% Similarity=0.179 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHH-ccCchhH-HHH----HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 005754 407 WLNQFSILLHRSLKE-RKHESLN-TLR----VFQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLP--SVNAVF 478 (679)
Q Consensus 407 ~~~Q~~~L~~R~~~~-~r~~~~~-~~r----~~~~i~~~ll~G~~f~~~~~~~~~~r~g~lf~~~~~~~~~~--~~~~i~ 478 (679)
.++.++.|.+|.++. .|+..+- .-- +++.++++++.|.+.-.- ..+..-.++.-...+.+.+ ...+..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~----~~~~~~~l~~G~~~w~f~~~~i~~~~~ 91 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP----GLNFLAYLLAGLILWFFFSEAISEGAG 91 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHHHHHHhHHH
Confidence 456778899999986 4655432 222 344445555555554332 1122112222222222221 122334
Q ss_pred HHHHhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhchhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005754 479 AFPQERAIFMKERASGMYTLSSYFMSRIIGDLPVELILPTVFLIIIYWMTGFKPEFIAFVQTLLVLLGYVLVSQGLGLAL 558 (679)
Q Consensus 479 ~f~~er~v~~rE~~~g~Y~~~ay~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i 558 (679)
.+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.. + ..+..+...+.+..+.+.++|+++
T Consensus 92 s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 92 SVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554332 288899999999998777776665555555444443 3 344444455556667778888998
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhcccC--CChhhhhhhhccCHHHHHHHHHHHHHhCC
Q 005754 559 GAIIMDAKQASTIVTVTMLAFVLTGGYYVH--KMPSCIAWIKYISSTYYNYRLLINVQYGD 617 (679)
Q Consensus 559 sa~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W~~yiSp~~Ya~~al~~nef~~ 617 (679)
|++..-+..-..+.+.++-+++..+|.+=+ ++|.-++|+.++||+.+-.|..=..-+.+
T Consensus 166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 888665555555555666666777776544 89999999999999999999876655554
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.7e-06 Score=82.89 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=48.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeE-EEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGT-ILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~-i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~ 178 (679)
.+..+++|.||||||||||.+.|++++++.++...- +..++........+..+++++.+ .++..++.+.+.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 456799999999999999999999998764322112 44554333222333457766533 33556777766554443
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.1e-05 Score=87.25 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=67.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCC---Cccc----cc---cCcEEEE----
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN---KPTK----HI---SKRTGFV---- 156 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~---~~~~----~~---~~~i~yv---- 156 (679)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.+.+.|+ +... .+ ..+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 4588988 999999999999999999999999999987432 2356666453 2211 11 1234455
Q ss_pred -ecCCC--CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005754 157 -TQDDI--LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203 (679)
Q Consensus 157 -~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 203 (679)
+|++. +.+.+ +...+.-..+..........+...+..++++.++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 77752 23322 333332211111111113356677788889998884
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=88.22 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=56.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEecCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVTQDDI 161 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~Q~~~ 161 (679)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++....|.|..+|.+... ...+++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 35789999 9999999999999999999999999999887654455888888876532 12356888876543
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00011 Score=72.44 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCccccccccCccCcccCHHHHHHHH--HHHHHhh-CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005754 193 AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVS--IAHEMLI-NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266 (679)
Q Consensus 193 v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--IA~aL~~-~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~ 266 (679)
+.+.++..++.- -.+.+ ....+|+||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 127 i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 127 MIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 444555555431 12332 34468999999987 5544433 33443 99999999999999999988764
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.6e-05 Score=87.63 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=43.1
Q ss_pred hCCCeEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCcEEEEEeCCccH-------HHHHhCCeEEEEeCCe
Q 005754 234 INPSLLILDEPTSGL----D-----STAAYRLVSTLGSLVQ-RGKTIVTSMHQPSS-------RVYQMFDKVLVLSEGR 295 (679)
Q Consensus 234 ~~P~lllLDEPtsgL----D-----~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~-------~i~~~~D~v~lL~~G~ 295 (679)
.+|+++++|.-++=. + .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999876421 1 2234556666777765 59999999996432 1467899999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00027 Score=72.62 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=34.3
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHh-CCcEEEEEeCCcc
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVST-LGSLVQ-RGKTIVTSMHQPS 278 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~-L~~l~~-~g~tii~~tH~~~ 278 (679)
+.+..++|+||+..|=++.....+... ++.|.+ .+..++++||...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 446789999999999999998877554 455777 4889999999864
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.7e-06 Score=83.80 Aligned_cols=28 Identities=39% Similarity=0.516 Sum_probs=26.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++|++++|.||||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999865
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.3e-05 Score=84.65 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=47.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT---NNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~---~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
.++||.||||||||||+++|.+++... +..|.+.+ ||.......++..++. |+..+++.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~-~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRW-PEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhc-CCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 699999999999999999999987521 11344433 4433322223335543 6666677788888777655443
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00027 Score=77.40 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=61.8
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC-----CHHHHHH----------HHHHHHHHH-hCCcEEEEEeCCccHH
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGL-----DSTAAYR----------LVSTLGSLV-QRGKTIVTSMHQPSSR 280 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL-----D~~~~~~----------i~~~L~~l~-~~g~tii~~tH~~~~~ 280 (679)
.=||-.-|=.+|..||=...++||+||=||+- |...+.. +.+.+++|. +.|.+.|+++-- +..
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgd 400 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGD 400 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chh
Confidence 46999999999999999999999999999974 4444443 366677774 458766666655 456
Q ss_pred HHHhCCeEEEEeCCeE
Q 005754 281 VYQMFDKVLVLSEGRC 296 (679)
Q Consensus 281 i~~~~D~v~lL~~G~i 296 (679)
.+..+|+|++|++=+.
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 8999999999987554
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.2e-05 Score=81.06 Aligned_cols=28 Identities=39% Similarity=0.568 Sum_probs=25.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++|.+++|.||+||||||+|++|.+.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999999774
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 679 | ||||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-20 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-18 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-17 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-17 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-17 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-17 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-17 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-17 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 8e-17 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-16 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-16 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-16 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-16 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-16 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-16 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-16 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-16 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-15 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-15 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-15 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-15 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-15 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-15 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 7e-15 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 7e-15 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-14 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-14 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-14 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-14 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-14 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 9e-14 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-13 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-13 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-13 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 5e-13 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 7e-13 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-12 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-12 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-12 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-12 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-12 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-11 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-11 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-11 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-11 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-11 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-11 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 5e-11 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-11 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-11 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-10 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-10 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-10 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-10 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-10 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-10 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-10 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-10 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 6e-10 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-09 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-09 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 4e-09 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-09 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-09 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-09 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-09 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 7e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-08 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-07 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-07 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-07 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 8e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 4e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 5e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 5e-05 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 1e-04 |
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-37
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 20/230 (8%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKP 145
Q +TIL I+ ++ G+ + G +G+GK+T+LN+L G L G +
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYS 91
Query: 146 TKHISKRTGFVTQD--DILYPHLTVRETLV--FCSLLRLPRTLSTKEKTSIAEAVMAELG 201
+ + + GFV+ + V + ++ + + + E + A ++ +G
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD-IDDEIRNEAHQLLKLVG 150
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
++ IG +S GE++RV IA ++ P +LILDEP +GLD A L+S L
Sbjct: 151 MSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILD 205
Query: 262 SLVQRGKTI----VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
SL T+ VT H + F K+L+L +G+ + G + ++
Sbjct: 206 SLSDSYPTLAMIYVT--HFIEE-ITANFSKILLLKDGQSIQQGAVEDILT 252
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 7e-33
Identities = 42/211 (19%), Positives = 93/211 (44%), Gaps = 23/211 (10%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
++ +L IT + G ++ GP+G GK+T+L ++ L L G I+ N T
Sbjct: 18 VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPIT 74
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
K + + F+ ++ I+ ++V + L SL + K I + + + +
Sbjct: 75 K-VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-----VNKNEIMD-ALESVEVLDL 127
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV- 264
+ + +S G +RV +A +L+N + +LD+P +D + ++++ ++ ++
Sbjct: 128 KKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK 181
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
++G I++S D L +
Sbjct: 182 EKGIVIISSRE-----ELSYCDVNENLHKYS 207
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 5e-32
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 31/232 (13%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNK 144
+ E T L ++G V GEIL ++GP+G+GKST+L +AG + G G G L
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLE--AW 66
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
++ +++Q V L +L + + +T + V L L
Sbjct: 67 SATKLALHRAYLSQQQTPPFATPVWHYL---TLHQHDK-----TRTELLNDVAGALALDD 118
Query: 205 CENTIIGNSFIRGISGGERKRVSIA-------HEMLINPSLLILDEPTSGLDSTAAYRLV 257
+SGGE +RV +A + LL+LDEP + LD L
Sbjct: 119 -----KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173
Query: 258 STLGSLVQRGKTIVTSMHQPS--SRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L +L Q+G IV S H + R + + +L G+ L G+ E ++
Sbjct: 174 KILSALSQQGLAIVMSSHDLNHTLR-H--AHRAWLLKGGKMLASGRREEVLT 222
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 8e-32
Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 29/224 (12%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
E + + ++ G+ILA+LG +G GKST+L++L G G +
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG------------KIEV 64
Query: 150 SKRTGFVTQDDILYPHLTVRETLVF-----CSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ GFV Q +V + ++ + P +A + L LT
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP----KSHDYQVAMQALDYLNLTH 120
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ +SGG+R+ + IA + L++LDEPTS LD ++S L L
Sbjct: 121 LAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLA 175
Query: 265 Q-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
Q + T+V + HQP+ V + +K L+L++ FG+ ++
Sbjct: 176 QSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQN-FKFGETRNILT 217
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 27/215 (12%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH- 148
++ IL GI+ + GEI ++GP+G+GK+T L +++ + +G + +
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 83
Query: 149 --ISKRTGFVTQDDILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ K ++ ++ Y ++ E L F E + E GL +
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS----SEIEEMVERATEIAGLGEK 139
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+ S G +++ IA +++NP L ILDEPTSGLD A + L Q
Sbjct: 140 IKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 266 RGKTIVTSMHQPSSRVY-----QMFDKVLVLSEGR 295
G TI+ S H + D++ ++ G
Sbjct: 195 EGLTILVSSH------NMLEVEFLCDRIALIHNGT 223
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 23/241 (9%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-K 147
E+ L ++ +++ GE L + G +GSGKST+L ++AG + +G +L + +
Sbjct: 18 LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGY 74
Query: 148 HISKRTGFVTQDDILYPH-----LTVRETLVFCSLLRLPRTL-STKEKTSIAEAVMAELG 201
I + G Q YP V + + F + ++ + + M +G
Sbjct: 75 EIRRNIGIAFQ----YPEDQFFAERVFDEVAFA-----VKNFYPDRDPVPLVKKAMEFVG 125
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
L + +SGGE++RV+IA ++ P +LILDEP GLD L+ +
Sbjct: 126 LDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE 182
Query: 262 SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMN 321
GKT++ H + V D+V+VL +G+ ++ G E + ++ F+ +
Sbjct: 183 KWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVM 241
Query: 322 P 322
Sbjct: 242 R 242
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 22/220 (10%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHIS 150
L GI + GE+ AILG +G GKST+ G L G + + K +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 151 KRTGFVTQD-D--ILYPHLTVRETLVFCSLLRLPRTL--STKEKTSIAEAVMAELGLTKC 205
+ G V QD D + +V + + F + E + + G+
Sbjct: 84 ESIGIVFQDPDNQLFSA--SVYQDVSFG-----AVNMKLPEDEIRKRVDNALKRTGIEHL 136
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL-V 264
++ +S G++KRV+IA +++ P +LILDEPT+GLD ++ L +
Sbjct: 137 KDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK 191
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ G TI+ + H V D V V+ EGR + G E
Sbjct: 192 ELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGNPKE 230
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 8e-26
Identities = 55/248 (22%), Positives = 90/248 (36%), Gaps = 36/248 (14%)
Query: 54 RIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPS 113
R + E + S S S K Q +LN G S EIL ++G +
Sbjct: 328 RFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGEN 387
Query: 114 GSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLV 173
G+GK+T++ +LAG + G + N ++ TVR+ L
Sbjct: 388 GTGKTTLIKLLAG-ALKPDE--GQDIPKLNV--SMKPQKIAPKFPG-------TVRQ-LF 434
Query: 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233
F + V+ L + I + ++ +SGGE +RV+I +
Sbjct: 435 FKKIR------GQFLNPQFQTDVVKPLRIDD-----IIDQEVQHLSGGELQRVAIVLALG 483
Query: 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKT--IVT---SMHQPSSRVYQMFDK 287
I + ++DEP++ LDS + + KT IV M + DK
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIM------ATYLADK 537
Query: 288 VLVLSEGR 295
V+V
Sbjct: 538 VIVFEGIP 545
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-25
Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 31/228 (13%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTN---------NNKPTK 147
PG++L ++G +G GKST L +LAG+ G N TK
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158
Query: 148 HISKRTGFVTQDD-ILYPHLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ + + + ++ + LL+L ++ + + L L
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM----EKSPEDVKRYIKILQLEN- 213
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
+ I +SGGE +R +I + + + DEP+S LD + SL+
Sbjct: 214 ----VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA 269
Query: 266 RGKTIVTSMHQPSSRVY---QMFDKVLVLSEGRCLYFGKGSEAMSYFE 310
K ++ H + + D V ++ G +G + S E
Sbjct: 270 PTKYVICVEH----DLSVLDYLSDFVCII-YGVPSVYGVVTLPASVRE 312
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 50/275 (18%), Positives = 96/275 (34%), Gaps = 43/275 (15%)
Query: 54 RIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPS 113
+I+ + + + K L G GEI+ ILGP+
Sbjct: 244 KIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPN 303
Query: 114 GSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLV 173
G GK+T +L G + G++ + +S + + + TV++
Sbjct: 304 GIGKTTFARILVGEITAD---EGSVTPEK----QILSYKPQRIFPN----YDGTVQQ--- 349
Query: 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233
L + + E V L L + + S + +SGGE +++ IA +
Sbjct: 350 ---YLENASKDALSTSSWFFEEVTKRLNLHR-----LLESNVNDLSGGELQKLYIAATLA 401
Query: 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT---IVT---SMHQPSSRVYQMFDK 287
L +LD+P+S LD Y + + + + K I+ S+ + D+
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI------HDYIADR 455
Query: 288 VLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNP 322
++V +G G + ++ MN
Sbjct: 456 IIVF-KGEPEKAGLATSPVTLKT--------GMNE 481
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 40/217 (18%), Positives = 84/217 (38%), Gaps = 21/217 (9%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-KRTGFVTQ 158
IL +LG +G GK+T+L +LAG + + ++ K K +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI-IPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79
Query: 159 D---DILYPHLTVRETLVFCSLLRLP--RTLSTKEKTSIAEAVMAELGLTKCENTIIGNS 213
+ + L ++ L+ L+ ++ + V L +T + N
Sbjct: 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN-----LWNK 134
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTS 273
+SGG +R+ +A +L + I D+P+S LD + + L + K ++
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-LKNKYVIVV 193
Query: 274 MHQPSSRVY---QMFDKVLVLSEGRCLYFGKGSEAMS 307
H + + D + ++ G +G+ S++ +
Sbjct: 194 DH----DLIVLDYLTDLIHII-YGESSVYGRVSKSYA 225
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 23/212 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGHG-LTGTILTN----N 142
+ +V G ++ I+GP+G+GK+T + +LAG+L + + + N
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 143 NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ G + + ++ + V + L L ++ E V+ EL L
Sbjct: 163 ELQNYFERLKNGEIRPV-VKPQYVDLLPKAVKGKVREL---LKKVDEVGKFEEVVKELEL 218
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ + + +SGGE +RV+IA +L DEP+S LD ++ +
Sbjct: 219 EN-----VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 263 LVQRGKTIVTSMHQPSSRVY---QMFDKVLVL 291
L GK ++ H + + D + V+
Sbjct: 274 LANEGKAVLVVEH----DLAVLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-24
Identities = 49/234 (20%), Positives = 94/234 (40%), Gaps = 37/234 (15%)
Query: 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN 142
K L G + GE++ I+GP+G GK+T + +LAG G + +
Sbjct: 361 PRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL 417
Query: 143 NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
++ + ++ + TV E + + S ++ LG+
Sbjct: 418 T-----VAYKPQYIKAE----YEGTVYE--LLSKIDS-----SKLNSNFYKTELLKPLGI 461
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262
+ + + +SGGE +RV+IA +L + + +LDEP++ LD + +
Sbjct: 462 IDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 516
Query: 263 LVQR-GKT--IVT---SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310
L+++ KT +V M + + D+++V EG G+ M E
Sbjct: 517 LMEKNEKTALVVEHDVLM------IDYVSDRLIVF-EGEPGRHGRALPPMGMRE 563
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 67/231 (29%), Positives = 98/231 (42%), Gaps = 54/231 (23%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL-----TGTILTNNNKPTK 147
IL GI+ V GE ++I+G SGSGKST+L +L GL G + K
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL--------GLLDAPTEGKVFLEG-KEVD 69
Query: 148 HIS---------KRTGFVTQDDILYPHLTVRETLVFCSLLRLP---RTLSTKEKTSIAEA 195
+ + ++ GFV Q L P LT E + +P KE E
Sbjct: 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENV------IVPMLKMGKPKKEAKERGEY 123
Query: 196 VMAELGLTKCENTIIGNSFIRG------ISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+++ELGL + +SGGE++RV+IA + P LL DEPT LD
Sbjct: 124 LLSELGLGD-----------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 250 STAAYRLVSTLGSLVQRGKTIVTSMHQP-----SSRVYQMFDKVLVLSEGR 295
S R++ + + G +IV H+ + R +M D +V R
Sbjct: 173 SANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 46/210 (21%), Positives = 79/210 (37%), Gaps = 24/210 (11%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
K ER L I + GE + ILGP+GSGK+T+L ++G L +G I N
Sbjct: 14 KGYERFSLENIN-LEVNGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING-MEV 67
Query: 147 KHISKRTGFVTQDDILYP-HLTVRETLVF-CSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ I + T Y +TV + + L L R + ++ L L +
Sbjct: 68 RKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR--------DLFLEMLKALKLGE 119
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
I + +S G+ V + + P ++ LDEP +D+ + + +
Sbjct: 120 ----EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY- 174
Query: 265 QRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294
GK + H+ + + G
Sbjct: 175 --GKEGILVTHE-LDMLNLYKEYKAYFLVG 201
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 37/230 (16%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
K L G + GE++ I+GP+G GK+T + +LAG + + G I +
Sbjct: 295 KDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTE--GKIEWDLT--- 348
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
++ + ++ D TV E + + S ++ LG+
Sbjct: 349 --VAYKPQYIKAD----YEGTVYE--LLSKIDA-----SKLNSNFYKTELLKPLGIID-- 393
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ + + +SGGE +RV+IA +L + + +LDEP++ LD + + L+++
Sbjct: 394 ---LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 450
Query: 267 -GKT--IVT---SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310
KT +V M + + D+++V EG +G+ M E
Sbjct: 451 NEKTALVVEHDVLM------IDYVSDRLMVF-EGEPGKYGRALPPMGMRE 493
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 9e-23
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLH---QGHGLTGTILTNNNKPTKH----ISKR 152
+V G ++ I+GP+G+GKST + +LAG+L G + + + + +
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 153 TGFVTQD------DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
G + D L P + + L ++T E V+ L L
Sbjct: 103 NGEIRPVVKPQYVD-LIPKAVKGKVI---------ELLKKADETGKLEEVVKALELEN-- 150
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR 266
+ I+ +SGGE +RV+IA +L N + DEP+S LD + L +
Sbjct: 151 ---VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE 207
Query: 267 GKTIVTSMHQPSSR---VYQMFDKVLVL 291
GK+++ H + + D + V+
Sbjct: 208 GKSVLVVEH----DLAVLDYLSDIIHVV 231
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 5e-23
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 41/222 (18%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL-----TGTILTNNN 143
+ L + + GE ++I+GPSGSGKSTMLN++ G G + +N
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII--------GCLDKPTEGEVYI-DN 66
Query: 144 KPTKHIS---------KRTGFVTQDDILYPHLTVRET----LVFCSLLRLPRTLSTKEKT 190
T + + GFV Q L P LT E L+F + +E+
Sbjct: 67 IKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG----EERR 122
Query: 191 SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
A + L + N +SGG+++RV+IA + NP +++ D+PT LDS
Sbjct: 123 KRALECLKMAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178
Query: 251 TAAYRLVSTLGSL-VQRGKTIVTSMHQP-----SSRVYQMFD 286
+++ L L + GKT+V H R+ + D
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 31/218 (14%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
L I + G A++G +GSGKST+ +L R + G I K
Sbjct: 32 NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYD---AEGDIKIGG-KNVNKY 86
Query: 150 SKRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL---- 200
++ + G V QD IL+ + T++ + + +T E+ I A+L
Sbjct: 87 NRNSIRSIIGIVPQDTILF-NETIKYNI------LYGKLDATDEEV-IKATKSAQLYDFI 138
Query: 201 -GLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257
L K +TI+GN +G+ SGGER+R++IA +L +P ++I DE TS LDS Y
Sbjct: 139 EALPKKWDTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 258 STLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ L + +T++ H+ S+ + + +++L++G+
Sbjct: 196 KAVEDLRK-NRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 4e-22
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 17/162 (10%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKH 148
+ G++ + GE++ +LGPSGSGK+T+L ++AG G + G +T+
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD-----LP 83
Query: 149 ISKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
KR G V Q+ L+ H+TV + + F LR R K + V L + E+
Sbjct: 84 PQKRNVGLVFQNYALFQHMTVYDNVSFG--LREKR----VPKDEMDARVRELLRFMRLES 137
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
N F +SGG+++RV++A + P +L+ DEP + +D
Sbjct: 138 --YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 8e-22
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 28/217 (12%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNN--KPTK 147
R L ++ V PG+ LA++GPSG+GKST+L +L R + G I +
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDISS--GCIRIDGQDISQVT 122
Query: 148 HISKRT--GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL----- 200
S R+ G V QD +L+ + T+ + + R R + ++ A A A +
Sbjct: 123 QASLRSHIGVVPQDTVLF-NDTIADNI------RYGRVTAGNDEV-EAAAQAAGIHDAIM 174
Query: 201 GLTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
+ T +G RG +SGGE++RV+IA +L P +++LDE TS LD++ + +
Sbjct: 175 AFPEGYRTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQA 231
Query: 259 TLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+L + +T + H+ S+ V D++LV+ +G
Sbjct: 232 SLAKVCA-NRTTIVVAHRLSTVVNA--DQILVIKDGC 265
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 1e-21
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 26/174 (14%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTML---NVL----AGR-------LHQGHGLTGTI 138
+L G++ G++++I+G SGSGKST L N L G ++ G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 139 LTNNNKPTKHISKRTGFVTQDDILYPHLTVRE--TLVFCSLLRLPRTLSTKEKTSIAEAV 196
+ + + R V Q L+ H+TV E +L L + + A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK----HDARERALKY 136
Query: 197 MAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+A++G+ + + + +SGG+++RVSIA + + P +L+ DEPTS LD
Sbjct: 137 LAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTML---NVL----AGRLHQGHGLTGTILTNNNKP 145
+L GI + GE++ ++GPSGSGKST L N+L G + + G L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII----IDGINLKAKDTN 94
Query: 146 TKHISKRTGFVTQDDILYPHLTVRE--TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ + G V Q L+PH+TV TL + + PR ++ + A ++ ++GL
Sbjct: 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR----EKAEAKAMELLDKVGLK 150
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+++ +SGG+ +RV+IA + + P +++ DEPTS LD
Sbjct: 151 D-----KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 7e-21
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 21/151 (13%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNKPTKHISKR-TGFVTQ 158
+ +LGP+G+GKS L ++AG + G + N P + +R GFV Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPE---RRGIGFVPQ 77
Query: 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218
D L+PHL+V + + L + + V + + + +
Sbjct: 78 DYALFPHLSVYRNIAY-GLRNVE-------RVERDRRVREMAEKLGIAH--LLDRKPARL 127
Query: 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
SGGER+RV++A ++I P LL+LDEP S +D
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-20
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 30/167 (17%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL----TGTILTN----NN 143
L+ ++ V GE ILGP+G+GK+ L ++A G +G IL + +
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIA-------GFHVPDSGRILLDGKDVTD 66
Query: 144 KPTKHISKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL 202
+ K FV Q+ L+PH+ V++ L F +R+ +K + V+
Sbjct: 67 LSPE---KHDIAFVYQNYSLFPHMNVKKNLEFG--MRM-------KKIKDPKRVLDTARD 114
Query: 203 TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
K E+ + + +SGGE++RV++A ++ NP +L+LDEP S LD
Sbjct: 115 LKIEH--LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-20
Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 11/163 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPT 146
+LN I+ + PGEIL I+G SG GK+T+L LAG G L+G + + N
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCE 206
+R G++ Q+ +L+PHLTV + + L T ++ EA++ G+++
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGN-GKGRTAQERQRIEAMLELTGISE-- 130
Query: 207 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ + +SGG+++R ++A + +P L++LDEP S LD
Sbjct: 131 ---LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 46/240 (19%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH--------QGHGLTGTILTNNNKP 145
L+G++ V+ G++ I+GP+GSGKST++NV+ G L + +T K
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN-------KE 75
Query: 146 TKHISK----RTGFVTQDDILYPHLTVRE-----------TLVFCSLLRLPRTLSTKEKT 190
+ RT F Q +TV E + + + +E
Sbjct: 76 PAELYHYGIVRT-F--QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP-KEEEMV 131
Query: 191 SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
A ++ L L+ + G +SGG+ K V I ++ NP ++++DEP +G+
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 251 TAAYRLVSTLGSLVQRGKTIVT---SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
A+ + + + L +G T + + V D + V+ G+ + G+G E +
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRL----DIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 6e-20
Identities = 57/173 (32%), Positives = 81/173 (46%), Gaps = 26/173 (15%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
IL I+ P I+A GPSG GKST+ ++L R +Q G I + +P +I
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPTA--GEITIDG-QPIDNI 69
Query: 150 SKRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL---- 200
S GFV+QD + T+RE L + T E +A
Sbjct: 70 SLENWRSQIGFVSQDSAIM-AGTIRENLTYGL-----EGDYTDEDL-WQVLDLAFARSFV 122
Query: 201 -GLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
+ NT +G RG+ SGG+R+R++IA L NP +L+LDE T+ LDS
Sbjct: 123 ENMPDQLNTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 5e-19
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 35/177 (19%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
IL+ I + GE++ I+G SGSGKST+ ++ R + G +L +
Sbjct: 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPEN--GQVLIDG-HDLALA 76
Query: 150 SKRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAE----AVMAE- 199
G V QD++L + ++ + + S+ + A +A
Sbjct: 77 DPNWLRRQVGVVLQDNVLL-NRSIIDNISL-----------ANPGMSVEKVIYAAKLAGA 124
Query: 200 ----LGLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
L + NTI+G +G SGG+R+R++IA ++ NP +LI DE TS LD
Sbjct: 125 HDFISELREGYNTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDY 178
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-17
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 30/176 (17%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+E L I + G+ +A++G SGSGKST+ +++ R + G IL + +
Sbjct: 354 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDE--GHILMDG-HDLRE 409
Query: 149 ISKRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA----- 198
+ + V+Q+ L+ + TV + + S ++ A A
Sbjct: 410 YTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFIN 464
Query: 199 --ELGLTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
+ GL +TIIG G +SGG+R+R++IA +L + +LILDE TS LD+
Sbjct: 465 KMDNGL----DTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 1e-17
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 36/179 (20%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+E+ L+ ++ + G+ +A++G SGSGKST+ N+ R + G+I + +
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVDS--GSICLDG-HDVRD 409
Query: 149 ISKRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA----- 198
V+Q+ L+ + T+ + + + T+E+ I +A
Sbjct: 410 YKLTNLRRHFALVSQNVHLF-NDTIANNIAYAAEGE-----YTREQ--IEQAARQAHAME 461
Query: 199 -----ELGLTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
GL +T+IG G +SGG+R+RV+IA +L + +LILDE TS LD+
Sbjct: 462 FIENMPQGL----DTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 2e-17
Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 54/200 (27%)
Query: 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLT-GTILTNNNK 144
A I TIL G+ +V GE+ A++GP+G+GKST+ +LAG + + G IL +
Sbjct: 11 ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEILLDGE- 67
Query: 145 PTKHISKRTGFVTQDDIL-----------------YPH----LTVRETLVFCSLLRLPRT 183
+IL YP +T+ LRL
Sbjct: 68 ---------------NILELSPDERARKGLFLAFQYPVEVPGVTIAN------FLRLALQ 106
Query: 184 LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIR-----GISGGERKRVSIAHEMLINPSL 238
+ +AE E S++ G SGGE+KR I +++ P+
Sbjct: 107 AKLGREVGVAE--FWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTY 164
Query: 239 LILDEPTSGLDSTAAYRLVS 258
+LDE SGLD A ++V+
Sbjct: 165 AVLDETDSGLD-IDALKVVA 183
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 5e-17
Identities = 59/178 (33%), Positives = 84/178 (47%), Gaps = 37/178 (20%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
E IL I + GE +A +G SG GKST++N++ R + G IL + K
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVTS--GQILIDG-HNIKDF 408
Query: 150 SKRT-----GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA------ 198
+ G V QD+IL+ TV+E + L R +T E+ + EA
Sbjct: 409 LTGSLRNQIGLVQQDNILF-SDTVKENI------LLGRPTATDEE--VVEAAKMANAHDF 459
Query: 199 ----ELGLTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250
G +T +G RG +SGG+++R+SIA L NP +LILDE TS LD
Sbjct: 460 IMNLPQGY----DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 83.2 bits (205), Expect = 1e-16
Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 28/188 (14%)
Query: 66 SFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLA 125
+ + + +LN + I GP+G GKST++ +A
Sbjct: 423 GPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA 482
Query: 126 GRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD-DILYPHLTVRETLVFCSLLRLPRTL 184
G RT +V D D + +V + +
Sbjct: 483 NGQVDGFPTQEEC-------------RTVYVEHDIDGTHSDTSVLDFV----------FE 519
Query: 185 STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244
S + + E G T E I +SGG + ++++A +L N +L+LDEP
Sbjct: 520 SGVGTKEAIKDKLIEFGFTD-EMI---AMPISALSGGWKMKLALARAVLRNADILLLDEP 575
Query: 245 TSGLDSTA 252
T+ LD+
Sbjct: 576 TNHLDTVN 583
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 193 AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
E + LGL I+ +S IRG+SGG++ ++ +A P L++LDEPT+ LD +
Sbjct: 880 IEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Query: 253 AYRLVSTLGSLVQRGKTIVTSMHQPSSR--VYQMFDKVLVLSEGRCLYFG 300
L L G I+ + H S + ++V + +GR G
Sbjct: 937 LGALSKALKEF--EGGVIIIT-H---SAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+ + I S +A++GP+G+GKST++NVL G L +G + H
Sbjct: 684 TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEV-------YTH 733
Query: 149 ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP 181
+ R ++ Q + + +T R
Sbjct: 734 ENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQ 766
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-16
Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK----P 145
E IL G+ V G+ +A++G SG GKST + L RL+ G + +
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ-LMQRLYDPLD--GMVSIDGQDIRTIN 458
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---LGL 202
+++ + G V+Q+ +L+ T+ E + + ++ E + A + L
Sbjct: 459 VRYLREIIGVVSQEPVLF-ATTIAENIRYGR-----EDVTMDEIEKAVKEANAYDFIMKL 512
Query: 203 TKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
+T++G RG SGG+++R++IA ++ NP +L+LDE TS LD+ + + + L
Sbjct: 513 PHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL 569
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ G+T + H+ S+ + D + G + G E M
Sbjct: 570 DK-AREGRTTIVIAHRLST--VRNADVIAGFDGGVIVEQGNHDELMR 613
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 32/221 (14%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
+L G++ V G+ LA++G SG GKST++ +L R + + G++ + K K +
Sbjct: 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFY--DPMAGSVFLDG-KEIKQL 1100
Query: 150 S-----KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA------ 198
+ + G V+Q+ IL+ ++ E + + R +S +E A+
Sbjct: 1101 NVQWLRAQLGIVSQEPILFD-CSIAENI---AYGDNSRVVSYEEIVRAAKEANIHQFIDS 1156
Query: 199 -ELGLTKCENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
NT +G+ +G +SGG+++R++IA ++ P +L+LDE TS LD+ + +
Sbjct: 1157 LPDKY----NTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-K 1208
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296
+V + G+T + H+ S+ Q D ++V+ G+
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKV 1247
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 51/230 (22%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVL-------AGRLHQGHGLTGTILTNN 142
+L G+T + PG++ A++GP+GSGKST+ +L G++ L G L
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL----LDGEPLVQY 86
Query: 143 NKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE--- 199
+ ++ + V Q+ +L+ + RE + + L RT + +E I M
Sbjct: 87 D--HHYLHTQVAAVGQEPLLF-GRSFRENIAY----GLTRTPTMEE---ITAVAMESGAH 136
Query: 200 ---LGLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
G + +T +G G SGG+R+ V++A ++ P LLILD TS LD+
Sbjct: 137 DFISGFPQGYDTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQL 193
Query: 255 RLVSTLGSLVQR---------GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
VQR +T++ Q S + +L L EG
Sbjct: 194 --------RVQRLLYESPEWASRTVLLITQQLSL--AERAHHILFLKEGS 233
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 65/226 (28%), Positives = 103/226 (45%), Gaps = 44/226 (19%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-------GRLHQGHGLTGTILTNN 142
+ L+ + + GE ILGPSG+GK+T + ++A G L+ ++ +N
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD----DRLVASN 72
Query: 143 NKPTKHISKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVM--AE 199
K R G V Q LYP+LT E + F L + K I + V A+
Sbjct: 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP--LTNMKM----SKEEIRKRVEEVAK 126
Query: 200 -LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
L + + N F R +SG +++RV++A ++ +PSLL+LDEP S LD A R S
Sbjct: 127 ILDIHH-----VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD--ARMR-DS 178
Query: 259 T---LGSLVQR-GKTIVTSMHQPSSRVYQ-----MFDKVLVLSEGR 295
+ + R G T++ H + D+V VL +G+
Sbjct: 179 ARALVKEVQSRLGVTLLVVSHD------PADIFAIADRVGVLVKGK 218
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 6e-15
Identities = 56/269 (20%), Positives = 103/269 (38%), Gaps = 58/269 (21%)
Query: 56 KIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGS 115
++ K+K+ ++ R+ N + S + + +L I + G++LA+ G +G+
Sbjct: 20 ELFEKAKQNNNNRKTSNGDDSLSFSN----FSLLGTPVLKDINFKIERGQLLAVAGSTGA 75
Query: 116 GKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ----------DDIL--- 162
GK+++L ++ G L G I S R F +Q ++I+
Sbjct: 76 GKTSLLMMIMGELEP---SEGKI---------KHSGRISFCSQNSWIMPGTIKENIIGVS 123
Query: 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI--SG 220
Y R + C L + K+ + E GI SG
Sbjct: 124 YDEYRYRSVIKACQLEEDISKFAEKDNIVLGE---------------------GGITLSG 162
Query: 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST--LGSLVQRGKTIVTSMHQPS 278
G+R R+S+A + + L +LD P LD + + + KT + +
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKME 220
Query: 279 SRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ DK+L+L EG ++G SE +
Sbjct: 221 --HLKKADKILILHEGSSYFYGTFSELQN 247
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 51/237 (21%), Positives = 89/237 (37%), Gaps = 63/237 (26%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR 152
+L I + G++LA+ G +G+GK+++L ++ G L G I S R
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKI---------KHSGR 70
Query: 153 TGFVTQDDILYP---HLTVRETLVF---------------CSLLRLPRTLSTKEKTSIAE 194
F +Q + T++E ++F C L + K+ + E
Sbjct: 71 ISFCSQ----FSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 126
Query: 195 AVMAELGLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
GI SGG+R R+S+A + + L +LD P LD
Sbjct: 127 ---------------------GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 253 AYRLVST--LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+ + + KT + + + DK+L+L EG ++G SE +
Sbjct: 166 EKEIFESCVCKLM--ANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 218
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 4e-14
Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 65/243 (26%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+ LNGIT + G ++A++G G GKS++L+ L + + + G +
Sbjct: 16 SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHV---------A 63
Query: 149 ISKRTGFVTQDDILYP---HLTVRETLVF---------------CSLLRLPRTLSTKEKT 190
I +V Q + ++RE ++F C+LL L + ++T
Sbjct: 64 IKGSVAYVPQ----QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRT 119
Query: 191 SIAEAVMAELGLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGL 248
I E +G+ SGG+++RVS+A + N + + D+P S +
Sbjct: 120 EIGE---------------------KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
Query: 249 DSTAAYRL----VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
D+ + + G L + KT + H S D ++V+S G+ G E
Sbjct: 159 DAHVGKHIFENVIGPKGML--KNKTRILVTHSMS--YLPQVDVIIVMSGGKISEMGSYQE 214
Query: 305 AMS 307
++
Sbjct: 215 LLA 217
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 30/222 (13%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKST---MLNVL----AGRLHQGHGLTGTIL 139
+ LN ++ V G+I ++G SG+GKST +N+L G + + G L
Sbjct: 37 GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL----VDGQEL 92
Query: 140 TN-NNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMA 198
T + ++ G + Q L TV + P L K + V
Sbjct: 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL------PLELDNTPKDEVKRRV-T 145
Query: 199 EL----GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
EL GL + S+ +SGG+++RV+IA + NP +L+ D+ TS LD
Sbjct: 146 ELLSLVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
Query: 255 RLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
++ L + +R G TI+ H+ V ++ D V V+S G
Sbjct: 201 SILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGE 241
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 4e-13
Identities = 87/295 (29%), Positives = 125/295 (42%), Gaps = 68/295 (23%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHI 149
T LN I + GE +A+LGPSGSGKST+L +AG + G P
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---- 72
Query: 150 SKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVM--AE-LGLTKC 205
R G V Q+ LYPH+TV + + F L L R +E I + V A+ L + K
Sbjct: 73 KDRNVGLVFQNWALYPHMTVYKNIAFP--LEL-RKAPREE---IDKKVREVAKMLHIDK- 125
Query: 206 ENTIIGNSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST-- 259
+ +SGG+++RV+IA ++ P +L+LDEP S LD A R +
Sbjct: 126 --------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD--ALLR-LEVRA 174
Query: 260 -LGSLVQRGKTIVTSMHQPSSRVY----Q-----MFDKVLVLSEGRCLYFGKGSEAMSYF 309
L L + T+ VY Q M D++ V+ EG L G E Y+
Sbjct: 175 ELKRLQKELGI--TT-------VYVTHDQAEALAMADRIAVIREGEILQVGTPDEV--YY 223
Query: 310 ESV-----GF--SPSFPMNPADFL-LDLANGVYHLDGVSEREKPNVKSSIVASYN 356
+ GF +P PMN F+ + +G + S+ P IV
Sbjct: 224 KPKYKFVGGFLGNP--PMN---FVEAKVEDGKLVITEKSKLPIPKQYVEIVKETG 273
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 3e-12
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 43/180 (23%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
++ +L IT + PG+ +A++GP+GSGK+T++N+L R + G IL + + I
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVDR--GQILV-DGIDIRKI 422
Query: 150 SK-----RTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ G V QD IL+ TV+E L + + + +E A+ +
Sbjct: 423 KRSSLRSSIGIVLQDTILF-STTVKENLKYGNP-----GATDEEIKEAAKLTHS------ 470
Query: 205 CENTIIGNSFIR---------------GISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249
+ FI+ +S G+R+ ++I L NP +LILDE TS +D
Sbjct: 471 -------DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 58/245 (23%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-- 150
IL I+ +SPG+ + +LG +GSGKST+L+ RL G I + I+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLN---TEGEIQIDG-VSWDSITLE 90
Query: 151 ---KRTGFVTQDDILYPHLTVRETL----------VFCSLLRLPRTLSTKEKTSIAEAVM 197
K G + Q ++ T R+ L ++ ++ + +
Sbjct: 91 QWRKAFGVIPQKVFIFSG-TFRKNLDPNAAHSDQEIWKVA----------DEVGLRSVIE 139
Query: 198 AELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS-TAAYRL 256
G G S G ++ + +A +L +L+LDEP++ LD T
Sbjct: 140 QFPGKLDFVLVDGGCVL----SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ--- 192
Query: 257 VSTLGSLVQR-------GKTIVTSMHQPSSRVYQMF--DKVLVLSEGRCLYFGKGSEAMS 307
+++R T++ R+ M D+ LV+ E + + E
Sbjct: 193 ------IIRRTLKQAFADCTVILCEA----RIEAMLECDQFLVIEENKVRQYDSILELYH 242
Query: 308 YFESV 312
Y
Sbjct: 243 YPADR 247
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 53/226 (23%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHI 149
++G++ V GE +A+LGPSG GK+T L +LAG + G +L N+ P
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP---- 72
Query: 150 SKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVM--AE-LGLTKC 205
R G V Q+ LYPH+TV E + F LR R K + + V+ A L +
Sbjct: 73 KYREVGMVFQNYALYPHMTVFENIAFP--LRARRI----SKDEVEKRVVEIARKLLIDN- 125
Query: 206 ENTIIGNSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST-- 259
+ +SGG+++RV++A ++ P +L+ DEP S LD A R +
Sbjct: 126 --------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD--ANLR-MIMRA 174
Query: 260 -LGSLVQRGKTIVTSMHQPSSRVY----Q-----MFDKVLVLSEGR 295
+ L Q TS VY Q M ++ V ++G+
Sbjct: 175 EIKHLQQELGI--TS-------VYVTHDQAEAMTMASRIAVFNQGK 211
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 66/233 (28%), Positives = 105/233 (45%), Gaps = 67/233 (28%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL----TGTILTN----NN 143
T +N + + GE L +LGPSG GK+T L ++AG L G I
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-------LEEPTEGRIYFGDRDVTY 77
Query: 144 KPTKH--ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVM--AE 199
P K IS V Q ++PH+TV E + F L++ + K I + V AE
Sbjct: 78 LPPKDRNIS----MVFQSYAVWPHMTVYENIAFP--LKIKKF----PKDEIDKRVRWAAE 127
Query: 200 -LGLTKCENTIIGNSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
L + + + +SGG+R+RV++A +++ P +L++DEP S LD A
Sbjct: 128 LLQIEE---------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD--AKL 176
Query: 255 RLVST---LGSLVQRGKTIVTSMHQPSSRVY----Q-----MFDKVLVLSEGR 295
R V+ + L Q+ K T+ +Y Q M D++ V++ G+
Sbjct: 177 R-VAMRAEIKKLQQKLKV--TT-------IYVTHDQVEAMTMGDRIAVMNRGQ 219
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 5e-12
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 46/198 (23%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHI 149
+ GI V G+I+ ++G +G+GK+T L+ +AG + G G +T NKP I
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT--NKPAHVI 78
Query: 150 SKR-TGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAV--MAELGLTKCE 206
++ V + ++P LTV E L+ + R K+K I + + L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNR-------KDKEGIKRDLEWIFSL------ 125
Query: 207 NTIIGNSFIR----------GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRL 256
F R +SGGE++ ++I ++ P LL++DEP+ GL A L
Sbjct: 126 -------FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL----APIL 174
Query: 257 V----STLGSLVQRGKTI 270
V + + Q G TI
Sbjct: 175 VSEVFEVIQKINQEGTTI 192
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 63/234 (26%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHI 149
T + ++ V GE + +LGPSG GK+T L ++AG +G G L + + +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 150 S--KRTGFVTQDDI--------LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVM-- 197
R DI LYPH+TV + + F L+L + + I + V
Sbjct: 77 PPKDR-------DIAMVFQSYALYPHMTVYDNIAFP--LKLRKV----PRQEIDQRVREV 123
Query: 198 AE-LGLTKCENTIIGNSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252
AE LGLT+ + R +SGG+R+RV++ ++ P + ++DEP S LD A
Sbjct: 124 AELLGLTE---------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD--A 172
Query: 253 AYRLVST---LGSLVQR-GKTI--VTSMHQPSSRVYQ-----MFDKVLVLSEGR 295
R V L L ++ G T VT H Q M D++ V++ G
Sbjct: 173 KLR-VRMRAELKKLQRQLGVTTIYVT--HD------QVEAMTMGDRIAVMNRGV 217
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 3e-11
Identities = 63/429 (14%), Positives = 122/429 (28%), Gaps = 145/429 (33%)
Query: 54 RIKIENKSKEG-----SSFR-RIFNRGSTSSTDDQGSTAKIQE-RTILNGITGMVSPGEI 106
IK E + R R++N + + + R L + P +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL----RPAKN 152
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL 166
+ I G GSGK+ +A + + + + I + L
Sbjct: 153 VLIDGVLGSGKT----WVALDVCLSYK----VQCKMD---------------FKIFW--L 187
Query: 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV 226
++ ++L + + L + + ++ +++ N +R S R
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQ---------IDPNWTSRSDHSS--NIKLRIHSIQAELRR 236
Query: 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286
+ + N LL+L VQ +++ + F+
Sbjct: 237 LLKSKPYEN-CLLVLLN--------------------VQ------------NAKAWNAFN 263
Query: 287 ---KVLVLSEGRCLYFGKGSEAMSYFESVGFSPSFPMNPADFLLDLANGVYHLDGVSERE 343
K+L+ + + + + ++ S +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL------------------------T 299
Query: 344 KPNVKSSIVASYNTLLAPKVRAACMEATTLPRREALLTGSSSSSHSSEEHTRSHNNNVIG 403
VKS LL + LPR E L T S +E R
Sbjct: 300 PDEVKS--------LLL---KYLDCRPQDLPR-EVLTTNPRRLSIIAES-IRDGLA---- 342
Query: 404 FATW-------LNQFSILLHRSLKE------RKHESLNTLRVFQV---IAASLLSGIMWW 447
TW ++ + ++ SL RK + L VF I LLS ++W+
Sbjct: 343 --TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDRLSVFPPSAHIPTILLS-LIWF 397
Query: 448 HSDFREVQD 456
+V
Sbjct: 398 DVIKSDVMV 406
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 9e-07
Identities = 78/537 (14%), Positives = 145/537 (27%), Gaps = 166/537 (30%)
Query: 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF-DKVL------VLS 292
+ D P S L S + V + ++ + Q F ++VL ++S
Sbjct: 38 VQDMPKSIL-SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 293 EGRCLYFGKGSEAMSYFESVG--------FSPSFPMNPADFLLDLANGVYHLDGVSEREK 344
+ Y E F+ + ++ L L + L R
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLEL-----RPA 150
Query: 345 PNV---------KSSIVASYNTLLAPKVRAA------------CMEATTLPRR-EALLTG 382
NV K+ + L+ KV+ C T+ + LL
Sbjct: 151 KNVLIDGVLGSGKTWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 383 SSSSSHSSEEHTRSHNNNVIGFATWLNQFSILLHRSLKERKHE-SL---------NTLRV 432
+ S +H+ + ++ L R LK + +E L
Sbjct: 209 IDPNWTSRSDHSSNIKLR-------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 433 FQVIAASLLSGIMWWHSDFREVQDRLGLFFFISVFWGVLPSVNAVFAFPQERAIFMKERA 492
F + LL+ + F++V D L + L + + +++ +K
Sbjct: 262 FNLSCKILLT------TRFKQVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLLK--- 309
Query: 493 SGMYTLSSYFMSRIIGDLPVE--LILPTVFLIIIYWMTG-FKPEFIAFVQTLLVLLGYVL 549
++ DLP E P II + +A +V
Sbjct: 310 ---------YLDCRPQDLPREVLTTNPRRLSII-----AESIRDGLATWDNWK----HVN 351
Query: 550 VSQGLGLALGAIIMDAKQASTIVTVTMLAFVLTGGYYVH--------KMPS---CIAWIK 598
+ L II ++S + +L + +P+ + W
Sbjct: 352 CDK-----LTTII----ESS----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 599 YISST-------YYNYRLLINVQYGDGKKISYLLGCFDRHGSSRDASCKFVEED-----I 646
I S + Y L+ K+ + + + K E I
Sbjct: 399 VIKSDVMVVVNKLHKYSLVE----KQPKESTISI-----PSIYLELKVKLENEYALHRSI 449
Query: 647 VGQ-----------ISPLVSIGAFLSMFVGYRLLA-------------YLALRRLKA 679
V + P F S +G+ L +L R L+
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 70/238 (29%), Positives = 104/238 (43%), Gaps = 77/238 (32%)
Query: 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGL----TGTILTN----NN 143
+ I + GE + +GPSG GKST+L ++AG L +G + N+
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-------LETITSGDLFIGEKRMND 69
Query: 144 KPTKHISKRTGFVTQDDI--------LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA 195
P +R + LYPHL+V E + F L+L +K I +
Sbjct: 70 TPPA---ER-------GVGMVFQSYALYPHLSVAENMSFG--LKLAGA----KKEVINQR 113
Query: 196 VM--AE-LGLTKCENTIIGNSFI----RGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248
V AE L L + + +SGG+R+RV+I ++ PS+ +LDEP S L
Sbjct: 114 VNQVAEVLQLAH---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164
Query: 249 DSTAAYRLVST---LGSLVQR-GKTI--VTSMHQPSSRVYQ-----MFDKVLVLSEGR 295
D AA R V + L +R G+T+ VT H Q + DK++VL GR
Sbjct: 165 D--AALR-VQMRIEISRLHKRLGRTMIYVT--HD------QVEAMTLADKIVVLDAGR 211
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 21/42 (50%), Positives = 31/42 (73%)
Query: 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127
++++ IL G++ V PGE+ AI+GP+GSGKST+ LAGR
Sbjct: 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVS 258
G SGGE+KR I ++ P L ILDE SGLD A ++V+
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALKVVA 204
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 36/221 (16%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN----NKP 145
+L+G+ V PG ++A+LG +GSGKST++N L RL G + +
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMN-LIPRLIDPER--GRVEVDELDVRTVK 411
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEK----TSIAEA---VMA 198
K + V Q+ +L+ T++E L+ R +T ++ IA+ +++
Sbjct: 412 LKDLRGHISAVPQETVLF-SGTIKEN------LKWGREDATDDEIVEAAKIAQIHDFIIS 464
Query: 199 -ELGLTKCENTII---GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAY 254
G ++ + G +F SGG+++R+SIA ++ P +LILD+ TS +D
Sbjct: 465 LPEGY----DSRVERGGRNF----SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEK 516
Query: 255 RLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
R++ L + T + + Q DK+LVL EG+
Sbjct: 517 RILDGLKRYTKGCTTFIIT--QKIPTALLA-DKILVLHEGK 554
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-09
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 219 SGGERKRVSIAHEMLI------NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVT 272
SGGER + +A + + SLLILDEPT LD +L++ + +++ ++
Sbjct: 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 118
Query: 273 SMH 275
H
Sbjct: 119 VSH 121
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 7e-09
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 219 SGGERKRVSIA------HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVT 272
SGGER + +A + SLLILDEPT LD +L++ + +++ ++
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 273 SMHQPSSRVYQMFDKVLVL 291
H + D V+ +
Sbjct: 310 VSHDEE--LKDAADHVIRI 326
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 219 SGGERKRVSIA-------HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIV 271
SGGE+ V+++ + +ILDEPT LD +L + + I+
Sbjct: 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMII 341
Query: 272 TSMHQPSSRVYQMFDKVLVLSE 293
+ H + D ++ + +
Sbjct: 342 IT-HHRELE--DVADVIINVKK 360
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 679 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.98 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.88 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.85 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.83 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.83 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.82 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.81 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.81 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.81 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.8 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.8 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.78 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.76 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.76 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.75 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.75 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.74 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.73 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.71 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.71 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.71 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.71 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.68 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.67 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.65 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.63 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.63 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.62 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.61 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.6 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.6 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.58 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.55 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.54 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.53 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.52 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.5 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.47 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.47 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.45 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.44 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.42 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.42 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.41 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.4 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.4 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.39 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.38 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.38 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.34 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.33 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.32 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.31 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.3 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.3 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.25 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.23 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.2 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.2 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.19 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.18 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.14 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.11 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.01 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.98 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.98 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.96 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.94 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.92 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.87 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.86 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.83 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.83 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.82 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.79 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.77 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.76 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.75 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.72 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.69 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.64 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.61 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.49 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.48 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.45 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.36 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.36 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.36 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.33 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.31 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.2 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.18 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.15 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.13 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.11 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.09 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.09 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.08 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.03 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.02 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.02 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.0 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.98 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.95 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.94 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.93 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.91 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.85 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.83 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.82 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.82 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.82 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.76 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.74 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.71 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.67 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.62 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.45 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.45 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.45 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.45 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.43 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.39 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.37 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.35 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.34 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.33 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.3 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.22 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.22 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.21 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.2 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.18 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.15 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.08 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.07 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.04 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.01 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.98 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.96 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.93 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.92 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.9 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.85 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.83 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.78 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.77 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.77 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.77 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.74 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.74 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.73 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.72 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.66 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.66 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.66 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.61 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.59 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.56 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.54 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.42 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.41 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.41 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.38 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.38 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.33 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.33 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.31 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.3 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.2 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.18 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.14 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.13 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.12 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.11 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.09 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.04 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.04 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.03 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.0 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.99 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.94 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.92 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.86 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.86 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.82 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.81 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.8 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.76 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.75 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.75 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.71 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.7 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.69 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.61 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.61 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.61 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.57 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.57 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.54 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.53 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.46 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 95.43 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.4 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.37 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.36 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.36 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.34 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.32 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.32 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.25 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.21 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.2 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.2 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.12 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.1 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.95 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.95 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.92 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 94.9 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.89 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.88 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.88 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.84 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 94.84 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.84 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.78 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.77 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.77 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.76 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.74 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.72 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.7 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.7 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.69 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.66 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.65 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.64 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.61 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.6 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.6 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.6 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.6 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.57 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.57 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.55 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.54 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.53 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.53 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.52 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 94.51 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.51 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.48 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.46 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.46 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.46 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.41 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.4 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.4 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.38 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.37 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.37 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.36 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.35 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.33 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.31 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.3 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.29 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.28 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.26 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.25 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.25 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.2 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.17 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.13 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.1 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.1 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.09 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.09 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.09 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.07 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.02 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.01 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 93.98 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.97 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 93.95 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 93.94 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 93.93 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 93.9 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 93.9 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 93.9 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 93.88 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 93.87 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 93.86 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 93.83 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 93.83 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 93.82 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.8 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 93.79 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 93.78 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 93.77 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 93.75 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 93.73 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 93.72 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 93.71 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.7 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 93.67 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 93.66 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 93.66 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.64 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.62 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 93.62 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.59 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.58 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.58 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.57 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.55 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.54 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.53 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.53 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.52 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.48 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.46 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.45 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.43 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.42 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 93.42 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.41 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.4 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.39 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.38 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.38 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.38 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.37 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.37 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 93.36 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.36 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.36 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.36 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.35 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.35 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.35 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.34 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.32 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.32 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.31 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.3 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.29 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.22 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.21 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.19 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.17 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.11 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.08 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.06 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.03 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.02 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 92.96 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 92.95 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 92.92 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 92.91 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 92.91 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 92.91 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.9 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.9 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 92.89 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 92.82 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 92.79 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 92.77 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 92.73 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 92.72 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 92.72 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 92.7 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 92.68 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 92.68 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.68 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 92.67 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 92.66 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.52 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.49 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.48 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 92.47 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 92.42 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.41 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.38 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 92.26 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.19 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.12 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.09 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 92.06 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.01 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 91.91 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 91.87 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.76 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 91.74 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 91.7 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 91.67 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 91.63 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 91.39 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 91.32 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 91.29 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 91.23 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 91.22 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 91.14 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 90.95 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 90.72 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 90.71 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 90.54 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 90.52 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 90.46 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 90.43 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 90.3 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 89.74 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 90.23 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 90.19 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 90.14 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 90.13 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 90.1 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 89.91 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-48 Score=415.35 Aligned_cols=204 Identities=25% Similarity=0.377 Sum_probs=183.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
..+|+||||+|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++++|||||++.++
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~ 117 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCC
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccC
Confidence 5699999999999999999999999999999999999986 48999999987532 2367899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.++...+ ..++++.+++++++|+.+||.+.+++ ++.+|||||||||+|||||+.+|++|||||
T Consensus 118 ~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGqkQRVaIArAL~~~P~lLLlDE 189 (366)
T 3tui_C 118 SSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQKQRVAIARALASNPKVLLCDQ 189 (366)
T ss_dssp TTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986653 24567778899999999999886654 456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+.++..++++|+++++ .|.|||++||++. .+.++||||++|++|++++.|+++++.
T Consensus 190 PTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999975 4999999999965 588999999999999999999998874
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=395.94 Aligned_cols=205 Identities=28% Similarity=0.465 Sum_probs=180.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDDILY 163 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~l~ 163 (679)
++++|+||||++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.+|||+|++.++
T Consensus 36 ~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~ 112 (263)
T 2olj_A 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112 (263)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCC
T ss_pred CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCC
Confidence 45799999999999999999999999999999999999986 4899999997652 12356799999999999
Q ss_pred CCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 164 PHLTVRETLVFCS-LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 164 ~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+.+||+||+.++. ... ..+..+.+++++++++.+||.+..++. +.+|||||||||+|||||+.+|++||||
T Consensus 113 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqkQRv~lAraL~~~p~lllLD 184 (263)
T 2olj_A 113 PHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQAQRVAIARALAMEPKIMLFD 184 (263)
T ss_dssp TTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 9999999999864 222 234555567889999999998766554 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++.
T Consensus 185 EPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999878999999999965 578899999999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-48 Score=416.62 Aligned_cols=213 Identities=29% Similarity=0.459 Sum_probs=189.3
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++.+|+||||++++||+++|+||||||||||||+|+|+++| .+|+|.++|++... ..++.+|||+|++
T Consensus 8 ~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~ 84 (381)
T 3rlf_A 8 NVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSY 84 (381)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSCEEEECTTC
T ss_pred eEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEECCCCCHHHCCEEEEecCC
Confidence 334455667899999999999999999999999999999999999986 48999999987542 3357899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+ +++++|||||||||+|||||+.+|++||
T Consensus 85 ~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~-----r~p~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 85 ALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp CCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTT-----CCGGGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhc-----CChhHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999987654 3467777889999999999987655 4556899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||||||+..+.++.+.|+++.++ |.|+|++|||+. ++..+||||++|++|+++..|+++++.+
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999765 999999999965 6899999999999999999999998754
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=415.74 Aligned_cols=212 Identities=29% Similarity=0.460 Sum_probs=185.3
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc----c--ccccCcEEEEe
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP----T--KHISKRTGFVT 157 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~----~--~~~~~~i~yv~ 157 (679)
++++|+++.+|+|||++|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++. . ...++.+|||+
T Consensus 10 ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf 86 (359)
T 3fvq_A 10 LSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGKTIFSKNTNLPVRERRLGYLV 86 (359)
T ss_dssp EEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEESSSCBCCGGGSCCEEEC
T ss_pred EEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEECcccccccchhhCCEEEEe
Confidence 34445567899999999999999999999999999999999999987 489999999765 1 13457899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++.+|||||||||+|||||+.+|+
T Consensus 87 Q~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 87 QEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGR-----YPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp TTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999975432 23456667889999999999886654 456799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||||+..+.++++.|+++. +.|+|||++|||.. ++..+||||++|++|+++..|+++++.+
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999888875 46999999999965 6889999999999999999999998743
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=389.24 Aligned_cols=206 Identities=29% Similarity=0.399 Sum_probs=177.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c----ccCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H----ISKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~----~~~~i~yv~Q~~~l 162 (679)
+.+|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... . .++.+|||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 5699999999999999999999999999999999999986 48999999976432 1 13469999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.++...+.....+.++..+++.++++.+||.+.. .++.+.+|||||||||+|||||+.+|++||||
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----ANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999876543222345667778899999999998642 12445689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+|||+.++..+++.|++++++ |+|||++||++. +.++||++++|++|+++..+++++.
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999999999999999765 999999999974 4589999999999999999987764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=397.70 Aligned_cols=207 Identities=27% Similarity=0.426 Sum_probs=181.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----------------cccc
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----------------KHIS 150 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----------------~~~~ 150 (679)
|+++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...+
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1b0u_A 16 YGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR 92 (262)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCEEECTTSSEEESCHHHHHHHH
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEccccccccccccccChhhHHHHh
Confidence 4446799999999999999999999999999999999999986 4899999997653 1235
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCS-LLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSI 228 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~I 228 (679)
+.+|||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. .++. +.+|||||||||+|
T Consensus 93 ~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 93 TRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSI 164 (262)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC-----GGGSCHHHHHHHHH
T ss_pred cceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC-----cccCCHHHHHHHHH
Confidence 67999999999999999999999854 222 23455556788999999999876 5544 55799999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 229 AHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 229 A~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999888999999999965 578899999999999999999988764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-47 Score=400.31 Aligned_cols=205 Identities=30% Similarity=0.446 Sum_probs=180.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCC-CCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDD-ILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~-~l~ 163 (679)
+.+|+|||++|++||+++|+||||||||||+|+|+|+++| .+|+|.++|++.. ...++.+|||||++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 4599999999999999999999999999999999999986 4899999998752 13467899999986 234
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
..+||+||+.|+.... ..+.++.+++++++++.+||.+..+.. +.+|||||||||+|||||+.+|++|||||
T Consensus 98 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqkQRv~iAraL~~~P~lLlLDE 169 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKP-----THCLSFGQKKRVAIAGVLVMEPKVLILDE 169 (275)
T ss_dssp CSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred ccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 4789999999976542 345677778899999999998866654 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+|||+.++..+++.|++++ ++|+|||++||++. .+.++|||+++|++|++++.|+++++.+
T Consensus 170 Pts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred ccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999997 56999999999976 4778999999999999999999988754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=408.79 Aligned_cols=213 Identities=27% Similarity=0.452 Sum_probs=187.6
Q ss_pred CCccccc-cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEec
Q 005754 82 QGSTAKI-QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQ 158 (679)
Q Consensus 82 ~~~~~~~-~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q 158 (679)
++++++| +++++|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|++... ..++.+|||+|
T Consensus 18 ~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 18 VGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp EEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred EEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEECCcCChhhCcEEEEec
Confidence 3444455 567799999999999999999999999999999999999986 48999999976532 34678999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999976543 23556677889999999999886654 4567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++.++.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+++..|+++++.
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999765 999999999964 688999999999999999999998874
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=393.60 Aligned_cols=209 Identities=27% Similarity=0.408 Sum_probs=182.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQDDILY 163 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~~~l~ 163 (679)
+|+++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++.++
T Consensus 24 ~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~ 100 (256)
T 1vpl_A 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY 100 (256)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCHHHHHTTEEEECTTCCCC
T ss_pred EECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCccHHHHhhcEEEEcCCCCCC
Confidence 34456799999999999999999999999999999999999986 48999999976532 3467899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.+....+ ..+.++.+++++++++.+||.+..++. +..|||||||||+|||||+.+|++|||||
T Consensus 101 ~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 101 RNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp TTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 123445557789999999998876654 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+|||+.++..+++.|++++++|+|||++||++. ++..+||++++|++|++++.|+++++.+
T Consensus 173 Pts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999878999999999965 5778899999999999999999888754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-47 Score=384.88 Aligned_cols=202 Identities=31% Similarity=0.424 Sum_probs=176.3
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------ccc-CcEEEEecC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HIS-KRTGFVTQD 159 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~-~~i~yv~Q~ 159 (679)
|+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..+ +.++||+|+
T Consensus 14 y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 90 (224)
T 2pcj_A 14 IRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90 (224)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSS
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECCCCCHHHHHHHHhCcEEEEecC
Confidence 4446799999999999999999999999999999999999986 48999999976532 122 579999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..+.. +++|||||||||+|||||+.+|++|
T Consensus 91 ~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~laral~~~p~ll 162 (224)
T 2pcj_A 91 HYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGGEQQRVAIARALANEPILL 162 (224)
T ss_dssp CCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred cccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999876543 234455567889999999998876654 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
||||||+|||+.++..+++.|++++++|+|||++|||+. .+ ++||++++|++|++++.|+.
T Consensus 163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999877999999999964 35 89999999999999998863
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-47 Score=407.22 Aligned_cols=212 Identities=33% Similarity=0.490 Sum_probs=186.7
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|++... ..++.+|||+|+..
T Consensus 9 l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (362)
T 2it1_A 9 IVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDVTELPPKDRNVGLVFQNWA 85 (362)
T ss_dssp EEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGTTEEEECTTCC
T ss_pred EEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEECCcCCHhHCcEEEEecCcc
Confidence 34445567899999999999999999999999999999999999986 48999999976532 23578999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++|||
T Consensus 86 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 86 LYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999986543 23456667889999999999886654 4567999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||+..+..+.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999765 999999999964 6889999999999999999999988743
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=394.75 Aligned_cols=208 Identities=26% Similarity=0.374 Sum_probs=179.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEEEecCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGFVTQDDIL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~yv~Q~~~l 162 (679)
|+++++|+|||+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++.+
T Consensus 17 y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 93 (257)
T 1g6h_A 17 FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQP 93 (257)
T ss_dssp ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGG
T ss_pred ECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCCCCHHHHHhCCEEEEccCCcc
Confidence 3456799999999999999999999999999999999999986 48999999976532 234579999999999
Q ss_pred CCCCCHHHHHHHHhhh-cCCC---------CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH
Q 005754 163 YPHLTVRETLVFCSLL-RLPR---------TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 232 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL 232 (679)
++.+||+||+.++... +... .....+.+++++++++.+||.+..++. ++.|||||||||+|||||
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkQrv~iAraL 168 (257)
T 1g6h_A 94 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----AGELSGGQMKLVEIGRAL 168 (257)
T ss_dssp GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----chhCCHHHHHHHHHHHHH
Confidence 9999999999986432 1010 012334556789999999998766654 457999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhh
Q 005754 233 LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 233 ~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~ 304 (679)
+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999888999999999976 4778999999999999999999887
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-47 Score=407.63 Aligned_cols=211 Identities=28% Similarity=0.441 Sum_probs=184.4
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l 162 (679)
+++|+++++|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.+|||+|+..+
T Consensus 10 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 86 (359)
T 2yyz_A 10 KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVLVNDIPPKYREVGMVFQNYAL 86 (359)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGTTEEEECSSCCC
T ss_pred EEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEECCCCChhhCcEEEEecCccc
Confidence 3445557799999999999999999999999999999999999986 48999999976532 235789999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+|++||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++||||
T Consensus 87 ~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 87 YPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp CTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999875432 23344556789999999999886654 45679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||||+..+..+.+.|+++.++ |.|+|++|||.. ++..+|||+++|++|+++..|+++++.+
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999764 999999999964 5889999999999999999999998753
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=407.03 Aligned_cols=210 Identities=30% Similarity=0.452 Sum_probs=185.1
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcEEEEe
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRTGFVT 157 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i~yv~ 157 (679)
++|+++++|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.+|||+
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~ 87 (372)
T 1g29_1 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVF 87 (372)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEEEGGGTEECCGGGSSEEEEC
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECCEECccccccccCCHhHCCEEEEe
Confidence 344456799999999999999999999999999999999999986 48999999976422 2357899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|+
T Consensus 88 Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 88 QSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp SCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred CCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986543 23456667889999999999886654 456799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||||+..+..+.+.|+++.++ |.|+|++|||+. ++..+||++++|++|+++..|+++++.+
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999765 999999999964 6889999999999999999999988753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-47 Score=407.04 Aligned_cols=209 Identities=30% Similarity=0.466 Sum_probs=184.3
Q ss_pred ccccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEE
Q 005754 86 AKIQERT--ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFV 156 (679)
Q Consensus 86 ~~~~~~~--iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv 156 (679)
++|++++ +|+|+||++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.+|||
T Consensus 11 ~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v 87 (353)
T 1oxx_K 11 KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLIVPPEDRKIGMV 87 (353)
T ss_dssp EEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEEETTEESSCGGGSCEEEE
T ss_pred EEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCEECcccccccCChhhCCEEEE
Confidence 3444566 99999999999999999999999999999999999986 48999999976422 246789999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|
T Consensus 88 ~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~-----~~~~LSGGq~QRvalAraL~~~P 159 (353)
T 1oxx_K 88 FQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDP 159 (353)
T ss_dssp ETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHHHHHHTTCC
T ss_pred eCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999875432 23566667889999999999886654 45679999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
++|||||||+|||+..+.++.+.|+++.++ |+|+|++|||+. ++..+|||+++|++|+++..|+++++.
T Consensus 160 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999764 999999999965 688999999999999999999998874
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-47 Score=387.72 Aligned_cols=206 Identities=25% Similarity=0.382 Sum_probs=176.9
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c-ccCcEEEEecCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQDDIL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q~~~l 162 (679)
|+++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... . .++.+|||+|++.+
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 92 (240)
T 1ji0_A 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECCCCCHHHHHhCCEEEEecCCcc
Confidence 3446799999999999999999999999999999999999986 48999999976532 1 24569999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
++.+||+||+.++.... ...++.+++++++++.++ |.+..++ .++.|||||||||+|||||+.+|++|||
T Consensus 93 ~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 93 FPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp CTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999864211 122344567788999994 8765554 4557999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+++.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999878999999999964 578899999999999999999987763
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-47 Score=392.40 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=178.6
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYP 164 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~ 164 (679)
+++++|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++... ..++.++|++|++.+++
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~ 98 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAF 98 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCC
Confidence 3567999999999999999999999999999999999999874 7999999987532 34567999999999888
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh------CCCe
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI------NPSL 238 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~------~P~l 238 (679)
.+||+||+.++.... ...+.+++++++++.+||.+..++. +++|||||||||+|||||+. +|++
T Consensus 99 ~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 99 PFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred CCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 899999999875432 1223456788999999998876654 45799999999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++..+++.|++++++ |+|||++|||+. ++.++|||+++|++|++++.|+++++.
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999999765 689999999965 578899999999999999999998863
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=406.91 Aligned_cols=209 Identities=27% Similarity=0.439 Sum_probs=177.8
Q ss_pred cccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCC
Q 005754 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYP 164 (679)
Q Consensus 87 ~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~ 164 (679)
+|+++++|+|+||++++||+++|+||||||||||||+|+|+++| .+|+|.++|++... ..++.+|||+|+..+||
T Consensus 20 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 96 (372)
T 1v43_A 20 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96 (372)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGGTEEEEEC------
T ss_pred EECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 34456799999999999999999999999999999999999986 48999999976532 23578999999999999
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
++||+||+.|+...+ ..++++.+++++++++.+||.+..++ ++++|||||||||+|||||+.+|++||||||
T Consensus 97 ~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 168 (372)
T 1v43_A 97 HMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAVARAIVVEPDVLLMDEP 168 (372)
T ss_dssp CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999875332 23566667889999999999886654 4567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+..+..+.+.|+++.++ |.|+|++|||.. ++..+|||+++|++|+++..|+++++.+
T Consensus 169 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 169 LSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999765 999999999965 5889999999999999999999998753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=400.13 Aligned_cols=208 Identities=27% Similarity=0.435 Sum_probs=181.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~ 160 (679)
+++++|+++ +|+|+|+++++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..++.+|||+|+.
T Consensus 6 ~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 6 SLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCEECCCCchhhCcEEEEecCc
Confidence 344556667 99999999999999999999999999999999999986 48999999976532 2356899999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.++|.+||+||+.|+...+. .++. ++++++++.+||++..++. +++|||||||||+|||||+.+|++||
T Consensus 82 ~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 82 SLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp CCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred ccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999765431 1111 6788999999999876644 55799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+.+.|+++.+ .|+|+|++|||+. ++..+|||+++|++|+++..|+++++.
T Consensus 151 LDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 151 LDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999975 5999999999964 588999999999999999999998873
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-46 Score=378.81 Aligned_cols=206 Identities=27% Similarity=0.412 Sum_probs=177.2
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDI 161 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~ 161 (679)
++++|++ +|+|+|+++++ |+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++.
T Consensus 7 l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (240)
T 2onk_A 7 AEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYA 80 (240)
T ss_dssp EEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCC
T ss_pred EEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEECCcCchhhCcEEEEcCCCc
Confidence 3344543 59999999999 99999999999999999999999986 48999999976532 34567999999999
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
+++.+||+||+.+....+ .....+++++++++.+||.+..+.. ++.|||||||||+|||||+.+|++|||
T Consensus 81 l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~lllL 150 (240)
T 2onk_A 81 LFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALARALVIQPRLLLL 150 (240)
T ss_dssp CCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHHHHHTTCCSSBEE
T ss_pred cCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999998864321 1222356788999999998866654 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||+|||+.++..+++.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 151 DEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp ESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999764 999999999965 578899999999999999999988764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-46 Score=387.80 Aligned_cols=207 Identities=27% Similarity=0.388 Sum_probs=173.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------ccccCcEEEEecCCCC-
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------KHISKRTGFVTQDDIL- 162 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------~~~~~~i~yv~Q~~~l- 162 (679)
++++|+||||+|++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.+|||+|++.+
T Consensus 33 ~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 45799999999999999999999999999999999999986 4899999997653 1346789999999754
Q ss_pred -CCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 163 -YPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 163 -~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.+.+||+||+.++...... .....++..++++++++.+||.+..++. +..|||||||||+|||||+.+|++||
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lLl 184 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLSTGEKQRVMIARALMGQPQVLI 184 (279)
T ss_dssp SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 3357999999875321100 0011234456788999999998766654 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTI--VTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~ti--i~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.++..+++.|++++++|+|| |++||++. ++.++||++++|++|++++.|+++++
T Consensus 185 LDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 185 LDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred EeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999997779999 99999975 47789999999999999999988775
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=384.06 Aligned_cols=204 Identities=27% Similarity=0.447 Sum_probs=176.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCC-CCCCCCCH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDD-ILYPHLTV 168 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~-~l~~~lTV 168 (679)
+++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++ .+++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 5699999999999999999999999999999999999986 48999999976533 3467899999995 56677999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC--ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT--KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 246 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts 246 (679)
+||+.+..... .+..+.+++++++++.+||. +..++. +++|||||||||+|||||+.+|++|||||||+
T Consensus 97 ~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 167 (266)
T 2yz2_A 97 FDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEKRRVAIASVIVHEPDILILDEPLV 167 (266)
T ss_dssp HHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccc
Confidence 99999864321 11222345688999999998 766554 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 247 GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 247 gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.+
T Consensus 168 ~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999877999999999976 4677899999999999999999888754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=379.58 Aligned_cols=208 Identities=26% Similarity=0.356 Sum_probs=169.4
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--cCCCCCeeeEEEECCCCccc----c-ccCcEEEEecCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR--LHQGHGLTGTILTNNNKPTK----H-ISKRTGFVTQDD 160 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~--~~~~~~~~G~i~~~g~~~~~----~-~~~~i~yv~Q~~ 160 (679)
|+++++|+|||+++++||+++|+||||||||||+|+|+|+ ++| .+|+|.++|.+... . .++.++||+|++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 3446799999999999999999999999999999999998 544 58999999976532 1 234689999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcc-cCHHHHHHHHHHHHHhhCCCe
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRG-ISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~-LSgGerqRv~IA~aL~~~P~l 238 (679)
.+++.+||+||+.+.............+..++++++++.+||. +..++. +.. |||||||||+|||||+.+|++
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqkQrv~iAraL~~~p~l 164 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGGEKKRNEILQLLVLEPTY 164 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----HHHHHHHHHHHHHCCSE
T ss_pred ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999998864311111123344556788999999994 655544 456 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhh
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSE 304 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~ 304 (679)
|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+ ||++++|++|++++.|+++.
T Consensus 165 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 165 AVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999777999999999976 36666 59999999999999999873
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=372.50 Aligned_cols=197 Identities=28% Similarity=0.400 Sum_probs=170.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++++|+|+|++|++||+++|+||||||||||||+|+|+++| .+|+|. .++.++||+|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~---------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIE---------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC---SEEEEE---------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---------EeccEEEEcCCCccCCCCCHH
Confidence 46799999999999999999999999999999999999986 478887 356799999999999999999
Q ss_pred HHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 170 ETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 170 E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
||+.++...... ......+.+++++++++.+||.+..++. +..|||||||||+|||||+.+|++|||||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999986432111 0011234456789999999998866654 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 249 DSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+ ++.|+++++
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999877 999999999965 5778999999999999 999988775
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=374.33 Aligned_cols=218 Identities=29% Similarity=0.362 Sum_probs=178.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cc-cCcEEEEecCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HI-SKRTGFVTQDDILY 163 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~-~~~i~yv~Q~~~l~ 163 (679)
+++++|+|||++|++||+++|+||||||||||||+|+|+... .+.+|+|.++|.+... .. ++.++||+|++.++
T Consensus 31 ~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 346799999999999999999999999999999999998421 1358999999976532 11 34599999999999
Q ss_pred CCCCHHHHHHHHhh-hc---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCc-ccCHHHHHHHHHHHHHhhCCC
Q 005754 164 PHLTVRETLVFCSL-LR---LPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIR-GISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 164 ~~lTV~E~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~-~LSgGerqRv~IA~aL~~~P~ 237 (679)
+.+||.||+.+... .+ .....+.++..++++++++.+||. +..++. +. +|||||||||+|||||+.+|+
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGq~QRv~iAraL~~~p~ 184 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-----VNVGFSGGEKKRNDILQMAVLEPE 184 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-----TTTTCCHHHHHHHHHHHHHHHCCS
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHHHHHHHHHHHHhCCC
Confidence 99999999987531 11 111223445567789999999996 444443 43 499999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh-CCeEEEEeCCeEEEecChhhHHHHHHHcCC
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM-FDKVLVLSEGRCLYFGKGSEAMSYFESVGF 314 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~ 314 (679)
+|||||||+|||+.++..+++.|++++++|+|||++||++.. +..+ ||++++|++|++++.|+++++.. .+..|+
T Consensus 185 lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 185 LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 999999999999999999999999997779999999999753 5555 89999999999999999987653 344444
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=371.20 Aligned_cols=201 Identities=26% Similarity=0.458 Sum_probs=168.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
++.+|+|||++|++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.+|||+|++.+++
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~- 96 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 96 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-
Confidence 35799999999999999999999999999999999999986 48999999976532 34567999999998887
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTII------GNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.||+||+.++. + ... .++++++++.+++.+..+... -++.+..|||||||||+|||||+.+|++|
T Consensus 97 ~tv~enl~~~~----~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 97 RSIIDNISLAN----P-GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp SBHHHHHTTTC----T-TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred ccHHHHHhccC----C-CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 59999998752 1 112 234567777888765443221 12346789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++..+++.|++++ +|+|||++||++.. + +.||++++|++|++++.|+++++.
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999995 59999999999763 4 569999999999999999988763
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=377.39 Aligned_cols=202 Identities=27% Similarity=0.389 Sum_probs=168.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+||||+|++||+++|+||||||||||||+|+|+++| .+|+|.++|.+... ..++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 5699999999999999999999999999999999999986 48999999976532 24567999999998887 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHH-----HHHHHHHHHHHc--CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKE-----KTSIAEAVMAEL--GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++... .....+ ....++++++.+ |+.+..+. .+..|||||||||+|||||+.+|++|
T Consensus 108 tv~enl~~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgGq~QRv~lAraL~~~p~ll 178 (271)
T 2ixe_A 108 SFRENIAYGLTR----TPTMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGGQRQAVALARALIRKPRLL 178 (271)
T ss_dssp BHHHHHHTTCSS----CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cHHHHHhhhccc----CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999875321 111111 122346677777 66654443 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+++.|+++++ +|+|||++||++. .+ ..||++++|++|+++..|+++++.+
T Consensus 179 lLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999965 5999999999975 34 4699999999999999999988753
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=368.68 Aligned_cols=196 Identities=29% Similarity=0.400 Sum_probs=172.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lT 167 (679)
++|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++|.+... ..++.++||+|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 479999999999999999999999999999999999875 5 999999976532 34567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC-------eEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-------LLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~-------lll 240 (679)
|+||+.+... +. .+ +++++++++.+||.+..++. +..|||||||||+|||||+.+|+ +||
T Consensus 90 v~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 90 VWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp HHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred HHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 9999987521 11 11 45688899999998866654 45799999999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999877999999999965 57789999999999999999988775
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=379.46 Aligned_cols=200 Identities=29% Similarity=0.471 Sum_probs=168.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+||||+|++||++||+||||||||||+|+|+|+++| .+|+|.++|.+... .+++.+|||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 5699999999999999999999999999999999999986 48999999987542 45778999999999986 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++... ...+ .++++++..++.+ ..++.++ +.+..|||||||||+|||||+.+|+||
T Consensus 143 Tv~eNi~~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iL 212 (306)
T 3nh6_A 143 TIADNIRYGRVT-----AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGII 212 (306)
T ss_dssp EHHHHHHTTSTT-----CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHHhhccc-----CCHH----HHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999876321 1222 2344444444432 3456665 356789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||||+.++..|++.|+++.+ ++|+|++||+++. +. .||+|++|++|++++.|+++++++
T Consensus 213 lLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~-~aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 213 LLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VV-NADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999865 7899999999753 54 599999999999999999998764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=369.15 Aligned_cols=204 Identities=29% Similarity=0.396 Sum_probs=172.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYP 164 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~ 164 (679)
+++++|+|||++|++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ...++.++||+|++.+++
T Consensus 13 ~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~ 89 (243)
T 1mv5_A 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA 89 (243)
T ss_dssp SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC
T ss_pred CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc
Confidence 346799999999999999999999999999999999999986 3799999997643 235678999999998887
Q ss_pred CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------cCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTII------GNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 165 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
.||+||+.++.. + ... .++++++++.+++.+..+... -++.+..|||||||||+|||||+.+|++
T Consensus 90 -~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 90 -GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp -EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred -ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 599999987421 1 112 234677889999987655432 1234678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||||+|||+.++..+++.|++++ +|+|||++||++. .+ ..||++++|++|++++.|+++++.+
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999997 6999999999975 34 5699999999999999999887653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=361.16 Aligned_cols=199 Identities=27% Similarity=0.434 Sum_probs=166.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|||++|++||+++|+||||||||||||+|+|++++ +|+|.++|.+... ..++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999863 6999999976532 34678999999999886 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. .... +++.++++.+++.+ ..++.++ +.+..|||||||||+|||||+.+|++|
T Consensus 108 tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~ll 177 (260)
T 2ghi_A 108 TIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIV 177 (260)
T ss_dssp EHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999987421 1122 23455666666543 3444443 457789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+++.|+++++ |+|||++||++.. + ..||++++|++|+++..|+++++..
T Consensus 178 lLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 178 IFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999965 8999999999764 4 5699999999999999999888653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=358.91 Aligned_cols=196 Identities=18% Similarity=0.318 Sum_probs=165.2
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l 162 (679)
+++++|++ ++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++|.+.. ..++.++||+|++.+
T Consensus 15 ~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~~-~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 15 DLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPIT-KVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGG-GGGGGEEEECSSCCC
T ss_pred EEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEEhh-hhcCcEEEEeCCCcC
Confidence 33444556 799999999999999999999999999999999999986 4899999997654 456789999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
++.+||+||+.+....+.. . .+ +++++++++.+||++. +. .+.+|||||||||+||+||+.+|++||||
T Consensus 90 ~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp CTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999987543211 1 11 3567889999999875 44 45579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
|||+|||+.++..+++.|++++++|+|||++||++.. +..++|+++++ +|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 9999999999999999999998678999999999764 77788888755 3544
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=363.80 Aligned_cols=193 Identities=23% Similarity=0.262 Sum_probs=168.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEE-EEecCCCCCCCCCH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTG-FVTQDDILYPHLTV 168 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~-yv~Q~~~l~~~lTV 168 (679)
+++|+|+|++++ ||+++|+||||||||||||+|+|++ |+ +|+|.++|.+... ..++.++ ||+|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 579999999999 9999999999999999999999998 74 8999999976432 1256799 99999887 7999
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
+||+.+..... .. .+++++++++.+||. +..+++ +.+|||||||||+|||||+.+|++|||||||+|
T Consensus 91 ~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 91 NDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp HHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred HHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 99999865432 11 134678899999998 766544 457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC-eEEEEeCCeEEEecChhhHH
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD-KVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D-~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+.++..+.+.|+++++ |||++||++. .+.++|| ++++|++|++++.|+++++.
T Consensus 159 LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 159 VDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred cCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999999854 9999999975 4678999 99999999999999998875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=349.48 Aligned_cols=190 Identities=26% Similarity=0.444 Sum_probs=156.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.++| +++|++|++.+++. ||+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g---------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECS---------CEEEECSSCCCCSB-CHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECC---------EEEEEecCCcccCC-CHH
Confidence 35799999999999999999999999999999999999986 489999988 38999999998885 999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
||+.++.. .... +.++.++.+++.+. .++.++ +.+..|||||||||+|||||+.+|++||||
T Consensus 87 enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 87 ENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99987421 1111 12334444444322 222333 346789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 243 EPTSGLDSTAAYRLVST-LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~-L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||+|||+.++..+++. ++++. +|+|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999997 45664 4899999999965 34 469999999999999999988764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=350.41 Aligned_cols=196 Identities=24% Similarity=0.416 Sum_probs=155.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+|++|++||+++|+||||||||||||+|+|+++| .+|+|.++| .++||+|++.+ +.+||+|
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g---------~i~~v~Q~~~~-~~~tv~e 84 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG---------SVAYVPQQAWI-QNDSLRE 84 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS---------CEEEECSSCCC-CSEEHHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC---------EEEEEcCCCcC-CCcCHHH
Confidence 5699999999999999999999999999999999999986 589999998 38999999865 5789999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
|+.+.... .....+......++.+.+++.+ ..++.+ ++.+..|||||||||+|||||+.+|++|||||||+|||
T Consensus 85 nl~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 159 (237)
T 2cbz_A 85 NILFGCQL----EEPYYRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159 (237)
T ss_dssp HHHTTSCC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HhhCcccc----CHHHHHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 99875321 1011111011111223333322 112223 34577899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 250 STAAYRLVSTLG---SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 250 ~~~~~~i~~~L~---~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+.++..+++.|+ +++ +|+|||++||++.. + ..||++++|++|++++.|+++++.+
T Consensus 160 ~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 160 AHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999995 443 48999999999764 4 5799999999999999999887643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=376.21 Aligned_cols=200 Identities=25% Similarity=0.304 Sum_probs=168.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
++.+|+||||+|++||+++|+||||||||||||+|+|+++ .+|+|.++|++... ..++.+|||||++.+|+
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 4679999999999999999999999999999999999975 37999999987542 34678999999999998
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC------ccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGN------SFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+||+||+.+.. ... +++++++++.++|.+..++.... +....|||||||||+|||||+.+|++|
T Consensus 108 ~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lL 177 (390)
T 3gd7_A 108 GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177 (390)
T ss_dssp EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999996321 112 34577889999998765543321 112239999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||||+..+..+.+.|+++. +++|+|++||+.. ....||||++|++|+++..|+++++.+
T Consensus 178 LLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 178 LLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999864 4899999999964 456799999999999999999998754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=381.57 Aligned_cols=201 Identities=27% Similarity=0.395 Sum_probs=171.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.++||+|++.+++.
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND- 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-
Confidence 5699999999999999999999999999999999999986 48999999977532 356789999999999985
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. + ..++ ++++++++.+++.+ ..|+.+|+ .+..||||||||++|||||+++|+++
T Consensus 432 tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~il 502 (582)
T 3b60_A 432 TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPIL 502 (582)
T ss_dssp BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEE
T ss_pred CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999987531 1 1222 34566677776653 34566664 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||+.++..+.+.|+++.+ |+|+|++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 503 ILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999975 9999999999864 4 5799999999999999999988754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=382.64 Aligned_cols=200 Identities=30% Similarity=0.466 Sum_probs=169.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++++|||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 5699999999999999999999999999999999999986 48999999987543 456789999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++. + ..+.+ .+.+.++..++ .+..++.+|+ .+..||||||||++|||||+++|+++
T Consensus 430 tv~eni~~~~----~-~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~il 499 (578)
T 4a82_A 430 TVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPIL 499 (578)
T ss_dssp BHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHhcCC----C-CCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999998752 1 12222 23344444443 4456677764 46689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||+.++..+.+.|+++. +++|+|++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 500 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 500 ILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999985 47999999999864 4 5699999999999999999998754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=382.60 Aligned_cols=201 Identities=26% Similarity=0.442 Sum_probs=170.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+||.+.. ...+++++||+|++.+++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~- 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND- 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-
Confidence 46899999999999999999999999999999999999874 799999997653 2457789999999999875
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-------cccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. + ..+ +++++++++.+++.+ ..|+.+|+ ....||||||||++|||||+++|++|
T Consensus 432 tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~il 502 (582)
T 3b5x_A 432 TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVL 502 (582)
T ss_pred cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999987531 1 112 234666777777654 34566664 46789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+|||||||||+.++..+.+.|+++.+ |+|+|++||+++. + +.||++++|++|++++.|+++++.+
T Consensus 503 llDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 503 ILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999865 9999999999753 4 5799999999999999999988743
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=381.77 Aligned_cols=200 Identities=27% Similarity=0.435 Sum_probs=168.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.+||.+... .++++++||+|++.+|+.
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG- 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-
Confidence 5699999999999999999999999999999999999986 48999999988643 457789999999999975
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. ..+.++ +.+.++..+ +.+..++.+++ .+..||||||||++|||||+++|++|
T Consensus 432 tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~il 501 (587)
T 3qf4_A 432 TIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVL 501 (587)
T ss_dssp EHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEE
T ss_pred cHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEE
Confidence 99999987521 122322 222333332 34455676764 56789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+.+.|+++. +|+|+|++||+++. ...||||++|++|++++.|+++++.+
T Consensus 502 llDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 502 ILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999985 58999999999753 46899999999999999999998764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=380.82 Aligned_cols=200 Identities=29% Similarity=0.466 Sum_probs=167.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... .++++++||+|++.+|+.
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST- 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-
Confidence 5699999999999999999999999999999999999986 48999999987543 456789999999999864
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCC-------CccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.++.. ..++++ ++++++..++ .+..++.+|+ ....||||||||++|||||+++|++|
T Consensus 444 tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~il 513 (598)
T 3qf4_B 444 TVKENLKYGNP-----GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKIL 513 (598)
T ss_dssp BHHHHHHSSST-----TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEE
T ss_pred cHHHHHhcCCC-----CCCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 112222 3333333333 3345566653 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+.+.|+++. +|+|+|++||+++. + +.||+|++|++|++++.|+++++.+
T Consensus 514 llDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 514 ILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred EEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999986 58999999999874 4 5599999999999999999998754
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=338.96 Aligned_cols=188 Identities=26% Similarity=0.447 Sum_probs=153.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
+++|+|+||+|++||+++|+||||||||||||+|+|+++| .+|+|.++| +++||+|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS---------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC---------EEEEEeCCCccCcc-cHHH
Confidence 5699999999999999999999999999999999999875 589999987 38999999988885 9999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-------ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
|+. +. . .... .+++.++.+++.+. .++.++ +.+..|||||||||+|||||+.+|++|||||
T Consensus 118 nl~-~~--~----~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--S----YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--C----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--c----cchH----HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 1 1111 22334455555332 122232 2357899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTL-GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L-~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+|||+.++..+++.+ +++. +|+|||++||++. .+ ..||++++|++|++++.|+++++.
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999974 5554 4899999999974 34 569999999999999999998874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=399.87 Aligned_cols=202 Identities=28% Similarity=0.451 Sum_probs=174.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
.++|+|||++|+|||.+||+||||||||||+++|.|+++|+ +|+|.+||.+... .+|++++||||++.+|+.
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g- 1167 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC- 1167 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-
T ss_pred CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-
Confidence 56999999999999999999999999999999999999874 7999999987643 578999999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
|++|||.|+.. |...+.++ +.++++..+ |++..||.+|+ ....||||||||++|||||+++|+||
T Consensus 1168 TIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1168 SIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp EHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred cHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 99999987532 22334433 444555444 45678999986 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+++...|.+.|+++. +|+|+|+++|+++. ...||||++|++|+|+++|+++++++
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred EEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999998875 48999999999874 56799999999999999999999875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=386.49 Aligned_cols=201 Identities=27% Similarity=0.436 Sum_probs=173.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
++++|+|+|++|++||.+||+||||||||||+++|.|.++| .+|+|.+||.+... .+|++++||+|++.+|..
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~ 506 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCccchhccHHHHhhcccccCCcceeeCC
Confidence 36799999999999999999999999999999999999986 48999999987543 567889999999999875
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-------GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
|++|||.|+.. ..+.++ +.++++.. .|++..||.+|++ ...||||||||++||||++++|+|
T Consensus 507 -TI~eNI~~g~~-----~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~I 575 (1321)
T 4f4c_A 507 -TIEENISLGKE-----GITREE----MVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKI 575 (1321)
T ss_dssp -EHHHHHHTTCT-----TCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred -chhHHHhhhcc-----cchHHH----HHHHHHHccchhHHHcCCCCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCE
Confidence 99999998631 233333 33333333 3467789999964 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||||+||++++..+.+.|+++.+ |+|+|+++|+++ ..+.||+|++|++|+|++.|+.+|+++
T Consensus 576 liLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 576 LLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999999864 899999999986 468899999999999999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=381.96 Aligned_cols=202 Identities=26% Similarity=0.418 Sum_probs=169.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|||+++++||++||+||||||||||+++|+|+++| .+|+|.++|.+... .+++.+|||+|++.+++.
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 478 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT- 478 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-
Confidence 4699999999999999999999999999999999999986 48999999987532 456789999999999976
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIA-----EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
||+||+.++.. ..+.++..+.+ .+.++. +.+..||.+|+ .+..||||||||++|||||+++|+||+|
T Consensus 479 ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 479 TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--ccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999998632 12333332222 222332 34566787874 4678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+||+.++..+.+.|+++. +|+|+|+++|+++. + ..||+|++|++|++++.|++++..+
T Consensus 551 DEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 551 DEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp ESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998875 48999999999753 4 5699999999999999999998764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=376.68 Aligned_cols=206 Identities=26% Similarity=0.455 Sum_probs=169.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+|+|++|++||++||+||||||||||+++|+|+++| .+|+|.++|.+... .++++++||||++.+++ .
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ 1121 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-C 1121 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-S
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-c
Confidence 4689999999999999999999999999999999999986 48999999987642 46788999999998875 6
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHH-H-HH-cCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAV-M-AE-LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~-l-~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
||+||+.++... ...+.++..+..++. + +. -.+.+..||.+|+ .+..|||||||||+|||||+++|+||+|||
T Consensus 1122 ti~eNi~~~~~~---~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDE 1197 (1284)
T 3g5u_A 1122 SIAENIAYGDNS---RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDE 1197 (1284)
T ss_dssp BHHHHHTCCCSS---CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEES
T ss_pred cHHHHHhccCCC---CCCCHHHHHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999999875321 122333332222211 0 11 1345567888885 467899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||+|||+.++..+.+.|+++ .+|+|||+++|+++. + ..||||++|++|++++.|+++++++
T Consensus 1198 pTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1198 ATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp CSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999885 458999999999874 4 6699999999999999999998754
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=344.34 Aligned_cols=202 Identities=22% Similarity=0.270 Sum_probs=169.4
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
..+++++.|++ ..|+++|+++++||+++|+||||||||||||+|+|+++|+ +|+|.+ .+.++|++|+
T Consensus 359 ~~~~l~~~~~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~---------~~~i~~v~Q~ 425 (607)
T 3bk7_A 359 EYPRLVKDYGS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW---------DLTVAYKPQY 425 (607)
T ss_dssp EECCEEEECSS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC---------CCCEEEECSS
T ss_pred EEeceEEEecc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE---------eeEEEEEecC
Confidence 34455555654 3689999999999999999999999999999999999874 566654 3469999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
....+.+||.|++....... ....++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|
T Consensus 426 ~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lL 493 (607)
T 3bk7_A 426 IKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIY 493 (607)
T ss_dssp CCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEE
T ss_pred ccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 88778899999886531100 112356788999999987666554 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++..+++.|+++++ +|.|||++|||+. .+..+|||+++|++ |+++..|+++++.+
T Consensus 494 lLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999974 6999999999965 58889999999986 88899999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=340.40 Aligned_cols=202 Identities=23% Similarity=0.268 Sum_probs=167.4
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~ 160 (679)
.+++++.|++ ..|+++|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.+ ...++||+|+.
T Consensus 290 ~~~l~~~~~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~---------~~~i~~v~Q~~ 356 (538)
T 1yqt_A 290 YPRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW---------DLTVAYKPQYI 356 (538)
T ss_dssp ECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC---------CCCEEEECSSC
T ss_pred EeeEEEEECC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE---------CceEEEEecCC
Confidence 3444445544 3689999999999999999999999999999999999874 566654 24699999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
...+.+||.|++........ ...++++++++.+|+.+..++. +..|||||||||+||++|+.+|++||
T Consensus 357 ~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~qrv~lAraL~~~p~lLl 424 (538)
T 1yqt_A 357 KADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDRE-----VNELSGGELQRVAIAATLLRDADIYL 424 (538)
T ss_dssp CCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred cCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 87788999998865311110 1134578889999997765554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAMSY 308 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 308 (679)
|||||+|||+.++..+++.|+++++ .|.|||++|||.. ++..+|||+++|++ |+++..|+++++.+-
T Consensus 425 LDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 9999999999999999999999974 5999999999964 58889999999986 889999999887653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=332.12 Aligned_cols=202 Identities=23% Similarity=0.285 Sum_probs=165.8
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD 160 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~ 160 (679)
.+++++.+++ ..|+++|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.+++ +.++|++|+.
T Consensus 272 ~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~--------~~i~~~~q~~ 339 (538)
T 3ozx_A 272 WTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK--------QILSYKPQRI 339 (538)
T ss_dssp ECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC--------CCEEEECSSC
T ss_pred EcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC--------eeeEeechhc
Confidence 3445555554 4678889999999999999999999999999999999874 78887654 3589999997
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.....+||.||+.+..... .. .....++++++.++|.+..++. +..|||||||||+|||||+.+|++||
T Consensus 340 ~~~~~~tv~~~l~~~~~~~----~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~QRv~iAraL~~~p~lLl 408 (538)
T 3ozx_A 340 FPNYDGTVQQYLENASKDA----LS--TSSWFFEEVTKRLNLHRLLESN-----VNDLSGGELQKLYIAATLAKEADLYV 408 (538)
T ss_dssp CCCCSSBHHHHHHHHCSST----TC--TTSHHHHHTTTTTTGGGCTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred ccccCCCHHHHHHHhhhhc----cc--hhHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 7667899999998742111 00 1123567889999998766554 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+++.|+++++ .|.|||++|||+. ++..+||||++|++ |.....+++.++.
T Consensus 409 LDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999975 5999999999965 68899999999986 6677777776543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=329.88 Aligned_cols=201 Identities=21% Similarity=0.258 Sum_probs=164.7
Q ss_pred Cccccccc-cceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEE
Q 005754 83 GSTAKIQE-RTILNGITGMVSPG-----EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFV 156 (679)
Q Consensus 83 ~~~~~~~~-~~iL~~vs~~i~~G-----e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv 156 (679)
+....|.+ +.+++|+|+++++| |+++|+||||||||||||+|+|+.+|+ +|+ .. .+..++|+
T Consensus 351 ~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~------~~---~~~~i~~~ 418 (608)
T 3j16_B 351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQ------DI---PKLNVSMK 418 (608)
T ss_dssp SSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCC------CC---CSCCEEEE
T ss_pred ceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCc------Cc---cCCcEEEe
Confidence 34445543 45899999999999 789999999999999999999999875 343 11 13469999
Q ss_pred ecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 157 TQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 157 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+|+.......||+|++.... + .... ..+.++++++.++|.+..++. +..|||||||||+|||+|+.+|
T Consensus 419 ~q~~~~~~~~tv~e~~~~~~--~--~~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 419 PQKIAPKFPGTVRQLFFKKI--R--GQFL---NPQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CSSCCCCCCSBHHHHHHHHC--S--STTT---SHHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHHHHTTSCC
T ss_pred cccccccCCccHHHHHHHHh--h--cccc---cHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHHHHHHhCC
Confidence 99977666679999875422 1 1111 123567899999998866654 5579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC--CeEEEecChhhHHHH
Q 005754 237 SLLILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE--GRCLYFGKGSEAMSY 308 (679)
Q Consensus 237 ~lllLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 308 (679)
++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. ++..+|||+++|++ |+++..|+|++++.-
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999999999999864 5999999999964 68899999999996 999999999988653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-35 Score=339.05 Aligned_cols=209 Identities=24% Similarity=0.328 Sum_probs=140.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHhcCcCCCCC----eeeEEEECCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTML---------------------NVLAGRLHQGHG----LTGTILTNNNK 144 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL---------------------~~L~G~~~~~~~----~~G~i~~~g~~ 144 (679)
.+.+|+||||+|++||+++|+||||||||||+ ++++|+..|+.+ ..+.+.+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 888887776532 24667777765
Q ss_pred ccccccCcEEEEecCCC-------------------CCCCCCHHHHHHHHhhhcCCCCCCHHHHH------HHHHHHHHH
Q 005754 145 PTKHISKRTGFVTQDDI-------------------LYPHLTVRETLVFCSLLRLPRTLSTKEKT------SIAEAVMAE 199 (679)
Q Consensus 145 ~~~~~~~~i~yv~Q~~~-------------------l~~~lTV~E~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~ 199 (679)
.....++.+++|+|... .++.+||+||+.+......... ...... ....++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 44333445555555432 2467899999987432211110 000000 111235888
Q ss_pred cCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 200 LGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINPS--LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 200 lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
+||.+. .++ .+.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999764 344 455799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 277 PSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 277 ~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
+. ....||++++| ++|++++.|+++++.
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 75 34579999999 899999999998864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=329.09 Aligned_cols=191 Identities=27% Similarity=0.334 Sum_probs=155.7
Q ss_pred CCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE---------EECCCCccc----
Q 005754 82 QGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI---------LTNNNKPTK---- 147 (679)
Q Consensus 82 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i---------~~~g~~~~~---- 147 (679)
++++++|+++ .+|+|+| +|++||+++|+||||||||||||+|+|+++|+.| ++ .++|.....
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G---~~~~~~~~~~~~~~g~~~~~~~~~ 100 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC---GDNDSWDGVIRAFRGNELQNYFEK 100 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT---TTCCSHHHHHHHTTTSTHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ccCcchhhhHHhhCCccHHHHHHH
Confidence 5677888776 4999999 9999999999999999999999999999987643 33 245544321
Q ss_pred --cccCcEEEEecCCCCCCC---CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH
Q 005754 148 --HISKRTGFVTQDDILYPH---LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE 222 (679)
Q Consensus 148 --~~~~~i~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 222 (679)
..+..+++++|+..+++. .|+.|++.... ..++++++++.+||.+..++. +.+|||||
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~-----~~~LSgGe 163 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLERE-----IQHLSGGE 163 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSB-----GGGCCHHH
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCC-----hhhCCHHH
Confidence 112468899987544332 38999875311 123477899999998766654 45799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
||||+||+||+.+|++|||||||++||+.++..+++.|++++++|.|||++||+.. .+..+||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999999888999999999964 688999999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=335.69 Aligned_cols=193 Identities=23% Similarity=0.298 Sum_probs=159.0
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC-C
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD-I 161 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~-~ 161 (679)
+++++|+++.+|+|+||++++||+++|+||||||||||||+|+| |++ +|.+... ..+++|++|+. .
T Consensus 440 ~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~--~~~~~~v~q~~~~ 506 (986)
T 2iw3_A 440 EFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE--ECRTVYVEHDIDG 506 (986)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT--TSCEEETTCCCCC
T ss_pred eEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc--ceeEEEEcccccc
Confidence 45556677889999999999999999999999999999999995 111 2322211 12478999884 6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
+++.+||.|++.+ .. . .. +++++++++.+||. +..++++ ..|||||||||+|||+|+.+|++||
T Consensus 507 ~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 507 THSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp CCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred cccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7889999999975 11 1 11 45688899999995 4455444 4799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE-EecChhhHHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL-YFGKGSEAMS 307 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv-~~G~~~~~~~ 307 (679)
|||||+|||+.++..+.+.|++ .|.|||++||+.. .+.++||++++|++|+++ +.|++++..+
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999998 5899999999964 588899999999999997 7899988654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=332.07 Aligned_cols=192 Identities=26% Similarity=0.343 Sum_probs=155.9
Q ss_pred CCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE---------EECCCCccc----
Q 005754 82 QGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI---------LTNNNKPTK---- 147 (679)
Q Consensus 82 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i---------~~~g~~~~~---- 147 (679)
++++++|+++ .+|+|+| ++++||+++|+||||||||||||+|+|+++|+.| ++ .++|.....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G---~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC---EDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT---TTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCC---ccccccchhhheeCCEehhhhhhh
Confidence 5677788776 4999999 9999999999999999999999999999987644 33 345554321
Q ss_pred --cccCcEEEEecCCCCCC---CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH
Q 005754 148 --HISKRTGFVTQDDILYP---HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE 222 (679)
Q Consensus 148 --~~~~~i~yv~Q~~~l~~---~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 222 (679)
..+..+++++|.....+ ..||.|++... . ..++++++++.+||.+..++.+ ++|||||
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------~-----~~~~~~~~L~~lgL~~~~~~~~-----~~LSGGe 233 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------D-----EVGKFEEVVKELELENVLDREL-----HQLSGGE 233 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-------C-----CSSCHHHHHHHTTCTTGGGSBG-----GGCCHHH
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhh-------H-----HHHHHHHHHHHcCCCchhCCCh-----hhCCHHH
Confidence 12345889998743322 23999998631 0 1134778999999988766554 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+..++|+|++|+++.
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 99999999999999999999999999999999999999999888999999999965 5788999999998653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=318.90 Aligned_cols=201 Identities=28% Similarity=0.408 Sum_probs=147.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc-----CcCC-----C--------CCeeeEEEECCCCccccc---
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG-----RLHQ-----G--------HGLTGTILTNNNKPTKHI--- 149 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G-----~~~~-----~--------~~~~G~i~~~g~~~~~~~--- 149 (679)
+.+|+|||++|++||+++|+||||||||||+++|.+ .+.. . ....|.+.+++.+.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 458999999999999999999999999999987641 1000 0 012356677665432100
Q ss_pred ------------------------------------------cCcEEEEecCCCCCC-----------------------
Q 005754 150 ------------------------------------------SKRTGFVTQDDILYP----------------------- 164 (679)
Q Consensus 150 ------------------------------------------~~~i~yv~Q~~~l~~----------------------- 164 (679)
.+..|+++|+..++|
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 012244444433322
Q ss_pred ---------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 165 ---------HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 165 ---------~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
.+||.||+.+.... . ..+++.+.++.+||.... .++.+.+|||||||||+|||||+.+
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~----~~~~~~~LSgG~~qrv~iAraL~~~ 561 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMK----LGQPATTLSGGEAQRVKLAAELHRR 561 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSB----TTCCGGGCCHHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhh----ccCCchhCCHHHHHHHHHHHHHhhC
Confidence 47999999874321 1 224456778889986421 1345568999999999999999998
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| ++|||||||+|||+.++..+++.|++++++|.|||++|||+. . ...||||++| ++|++++.|+++++.
T Consensus 562 p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 562 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp CCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 7 499999999999999999999999999988999999999975 3 4779999999 899999999998873
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-33 Score=329.89 Aligned_cols=192 Identities=26% Similarity=0.382 Sum_probs=149.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCC----CCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL----YPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l----~~~l 166 (679)
+++|+|+|+++++||+++|+||||||||||||+|+|+++| .+|+|.+++. .+++|++|+... ....
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P---~sG~I~~~~~-------~~I~yv~Q~~~~~l~~~~~~ 755 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVYTHEN-------CRIAYIKQHAFAHIESHLDK 755 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC---SEEEEEECTT-------CCEEEECHHHHHHGGGCTTS
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEEcCc-------cceEeeccchhhhhhccccc
Confidence 5799999999999999999999999999999999999986 4899999863 248899887521 2245
Q ss_pred CHHHHHHHHhhhc------------CC----------------------------------------------------C
Q 005754 167 TVRETLVFCSLLR------------LP----------------------------------------------------R 182 (679)
Q Consensus 167 TV~E~l~~~~~~~------------~~----------------------------------------------------~ 182 (679)
|+.|++.+..... .. .
T Consensus 756 t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~ 835 (986)
T 2iw3_A 756 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWV 835 (986)
T ss_dssp CHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEE
T ss_pred CHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhccccccc
Confidence 7888776421000 00 0
Q ss_pred CC--------C--------------------------HHHHHHHHHHHHHHcCCCcc--ccccccCccCcccCHHHHHHH
Q 005754 183 TL--------S--------------------------TKEKTSIAEAVMAELGLTKC--ENTIIGNSFIRGISGGERKRV 226 (679)
Q Consensus 183 ~~--------~--------------------------~~~~~~~v~~~l~~lgL~~~--~~~~vg~~~~~~LSgGerqRv 226 (679)
.. + .....++++++++.+||.+. .+. .+++|||||||||
T Consensus 836 ~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~-----~~~~LSGGQkQRV 910 (986)
T 2iw3_A 836 PMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS-----RIRGLSGGQKVKL 910 (986)
T ss_dssp ECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS-----CGGGCCHHHHHHH
T ss_pred ccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC-----CccccCHHHHHHH
Confidence 00 0 00013467889999999742 333 3457999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++||++. .+.++||++++|++|+++..|+
T Consensus 911 aLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999988765 679999999964 5778999999999999987774
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=305.06 Aligned_cols=197 Identities=22% Similarity=0.277 Sum_probs=148.3
Q ss_pred CCcccccccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE-----------EECCCCccc--
Q 005754 82 QGSTAKIQER-TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI-----------LTNNNKPTK-- 147 (679)
Q Consensus 82 ~~~~~~~~~~-~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i-----------~~~g~~~~~-- 147 (679)
.+++++|+.. ..|++++ .+++||+++|+||||||||||||+|+|+++|+. |+| .+.|.....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhh
Confidence 3567778765 4677777 689999999999999999999999999998864 444 122322111
Q ss_pred --cccCc--EEEEecCCCC------CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcc
Q 005754 148 --HISKR--TGFVTQDDIL------YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRG 217 (679)
Q Consensus 148 --~~~~~--i~yv~Q~~~l------~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 217 (679)
...+. ..+.+|.... -+..++.+++.... . ...++++++++.+||.+..++.+ ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~~-----~~ 221 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRDI-----EK 221 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSCT-----TT
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCCh-----HH
Confidence 01111 2233443211 12235666554311 0 12356888999999988766554 57
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++..++|++++|++|..+
T Consensus 222 LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999999999888999999999965 688999999999987655
Q ss_pred E
Q 005754 298 Y 298 (679)
Q Consensus 298 ~ 298 (679)
|
T Consensus 301 ~ 301 (608)
T 3j16_B 301 Y 301 (608)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=303.04 Aligned_cols=190 Identities=20% Similarity=0.220 Sum_probs=141.9
Q ss_pred cccccccceeeceEEE-EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE-----------EECCCCcccc----
Q 005754 85 TAKIQERTILNGITGM-VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI-----------LTNNNKPTKH---- 148 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~-i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i-----------~~~g~~~~~~---- 148 (679)
+.+|+.+- ++-..+. +++||++||+||||||||||||+|+|+++|+ +|++ .++|.+....
T Consensus 6 ~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 6 IHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp EEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred ceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 34554432 3333333 3599999999999999999999999999875 4555 4555543211
Q ss_pred c--cCcEEEEecCCCCC---CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHH
Q 005754 149 I--SKRTGFVTQDDILY---PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGER 223 (679)
Q Consensus 149 ~--~~~i~yv~Q~~~l~---~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 223 (679)
. ...+..+.|..... ...||+|++... +.+++++++++.+|+.+..++.+ +.||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~ 144 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDA-----NILSGGGL 144 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHH
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 1 12344444443221 224888866421 11234678899999988766554 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEE
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL 297 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv 297 (679)
|||+||+||+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. ++..+||+|++|++|...
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 999999999999999999999999999999999999999976 999999999964 688999999999875443
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=302.41 Aligned_cols=201 Identities=27% Similarity=0.412 Sum_probs=153.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHhcCcCCCCC---ee------eEEEECCCCcccc----
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTML---------NVLAGRLHQGHG---LT------GTILTNNNKPTKH---- 148 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL---------~~L~G~~~~~~~---~~------G~i~~~g~~~~~~---- 148 (679)
...|+|||++|++|++++|+||||||||||+ +.+.+...+.+. .. +.+.++..+....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 444443322111 12 3344443322100
Q ss_pred -----------------------------------------ccCcEEEEecCCCCCC-----------------------
Q 005754 149 -----------------------------------------ISKRTGFVTQDDILYP----------------------- 164 (679)
Q Consensus 149 -----------------------------------------~~~~i~yv~Q~~~l~~----------------------- 164 (679)
..+..|++.|+..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 0123578888776655
Q ss_pred ---------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 165 ---------HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 165 ---------~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
.+||.|++.|.... ....++.++|+.+||.... + ++.+.+|||||||||+|||||+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 36888888874321 1234567899999996521 2 245668999999999999999987
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| +||||||||+|||+.++..+++.|++++++|.|||+++|++. ....||+|++| ++|++++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 6 799999999999999999999999999988999999999974 34679999999 899999999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-30 Score=302.25 Aligned_cols=199 Identities=28% Similarity=0.404 Sum_probs=151.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cCc---------CCCC--Ceee------EEEECCCCccccc----
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-GRL---------HQGH--GLTG------TILTNNNKPTKHI---- 149 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~-G~~---------~~~~--~~~G------~i~~~g~~~~~~~---- 149 (679)
..|+|||++|++||+++|+|+||||||||+++|. |.+ .++. ...| .|.+++.+.....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999853 211 1211 1233 5778876542100
Q ss_pred -------------------cCcEEEEecCCCCC----------------------C------------------------
Q 005754 150 -------------------SKRTGFVTQDDILY----------------------P------------------------ 164 (679)
Q Consensus 150 -------------------~~~i~yv~Q~~~l~----------------------~------------------------ 164 (679)
.+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 12357777643221 1
Q ss_pred --------CCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHHHhhC
Q 005754 165 --------HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLIN 235 (679)
Q Consensus 165 --------~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~ 235 (679)
.+||.|++.|... . . ..+++.++|+.+||.. ..+. .+..|||||||||+||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTC-----CGGGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccC-----chhhCCHHHHHHHHHHHHHhcC
Confidence 4678888876421 1 1 1234568899999976 3443 4557999999999999999986
Q ss_pred C---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 236 P---SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 236 P---~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
| ++|||||||+|||+.++..+++.|++++++|.|||+++|++. . ...||+|++| ++|++++.|+++++.
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 5 999999999999999999999999999988999999999964 3 4789999999 689999999998864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=298.77 Aligned_cols=197 Identities=29% Similarity=0.385 Sum_probs=148.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HhcCcC-------CC---------------CCeee-------EEEECC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNV-LAGRLH-------QG---------------HGLTG-------TILTNN 142 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~-L~G~~~-------~~---------------~~~~G-------~i~~~g 142 (679)
+|+|||++|++||+++|+|+||||||||++. |+|.+. ++ ....| .+.+++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq 591 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQ 591 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECS
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECC
Confidence 6999999999999999999999999999996 776432 10 01356 688887
Q ss_pred CCcccccc-----------------------C----------------------cEEEEecCCCCCC-------------
Q 005754 143 NKPTKHIS-----------------------K----------------------RTGFVTQDDILYP------------- 164 (679)
Q Consensus 143 ~~~~~~~~-----------------------~----------------------~i~yv~Q~~~l~~------------- 164 (679)
.+.....+ + ..|++..+..+++
T Consensus 592 ~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r 671 (842)
T 2vf7_A 592 KPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTR 671 (842)
T ss_dssp SCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCC
T ss_pred eeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcc
Confidence 65421110 1 1222221111222
Q ss_pred -----------C--------CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHH
Q 005754 165 -----------H--------LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERK 224 (679)
Q Consensus 165 -----------~--------lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerq 224 (679)
. +|+.|++.|.. . . ...+++.++|+.+||... .+ +.+..|||||||
T Consensus 672 ~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~--~~~~~~~~~L~~~gL~~~~l~-----~~~~~LSGGekQ 737 (842)
T 2vf7_A 672 YNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-E--SAIFRALDTLREVGLGYLRLG-----QPATELSGGEAQ 737 (842)
T ss_dssp BCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-S--HHHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHH
T ss_pred cchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-c--hHHHHHHHHHHHcCCCccccc-----CCcccCCHHHHH
Confidence 2 34555544421 1 1 123467899999999863 23 345679999999
Q ss_pred HHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCe
Q 005754 225 RVSIAHEMLIN---PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGR 295 (679)
Q Consensus 225 Rv~IA~aL~~~---P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~ 295 (679)
||+||++|+.+ |+||||||||+|||+.++..+++.|++++++|.|||+++|++. .+ +.||+|++| ++|+
T Consensus 738 Rv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 738 RIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 99999999996 6999999999999999999999999999988999999999964 45 889999999 6899
Q ss_pred EEEecChhhH
Q 005754 296 CLYFGKGSEA 305 (679)
Q Consensus 296 iv~~G~~~~~ 305 (679)
+++.|+++++
T Consensus 816 Iv~~g~~~el 825 (842)
T 2vf7_A 816 LVAQGTPAEV 825 (842)
T ss_dssp EEEEECHHHH
T ss_pred EEEEcCHHHH
Confidence 9999999876
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-28 Score=264.26 Aligned_cols=206 Identities=17% Similarity=0.190 Sum_probs=147.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCC-----------------------------------CCe
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQG-----------------------------------HGL 134 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~-----------------------------------~~~ 134 (679)
+..+++++|+++++| +++|+|||||||||||++|.++..+. ...
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 345789999999999 99999999999999999997765421 012
Q ss_pred eeEEEECCCCccc----cc-cCcEEEEecCCCCCCCCCHHHHHHHHhhhcC-----------------------CCCC--
Q 005754 135 TGTILTNNNKPTK----HI-SKRTGFVTQDDILYPHLTVRETLVFCSLLRL-----------------------PRTL-- 184 (679)
Q Consensus 135 ~G~i~~~g~~~~~----~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------------------~~~~-- 184 (679)
.|.+.+||.+... .+ +..+++++|++.++.. +..+...|...... ....
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~ 204 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESS 204 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5789999987542 22 3348999999876543 55555444221100 0000
Q ss_pred --C------------------------------HHHHHHHHHHHHHHcCCCcccc----------------c---cccC-
Q 005754 185 --S------------------------------TKEKTSIAEAVMAELGLTKCEN----------------T---IIGN- 212 (679)
Q Consensus 185 --~------------------------------~~~~~~~v~~~l~~lgL~~~~~----------------~---~vg~- 212 (679)
. .....+.+++.++.+++.+..- . .+..
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 0 0011233455666666654100 0 0110
Q ss_pred -----ccCcc-cCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 213 -----SFIRG-ISGGERKRVSIAHEMLINP--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 213 -----~~~~~-LSgGerqRv~IA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++...
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~ 361 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAAR 361 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhh
Confidence 11222 6999999999999999999 9999999999999999999999999998 599999999997 35689
Q ss_pred CCeEEEE----eCCeEEEec
Q 005754 285 FDKVLVL----SEGRCLYFG 300 (679)
Q Consensus 285 ~D~v~lL----~~G~iv~~G 300 (679)
||++++| ++|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-31 Score=297.45 Aligned_cols=185 Identities=12% Similarity=0.083 Sum_probs=147.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeee-E-EEECCCCccccccCcEEEEecCCC---CCCCCCHH
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTG-T-ILTNNNKPTKHISKRTGFVTQDDI---LYPHLTVR 169 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G-~-i~~~g~~~~~~~~~~i~yv~Q~~~---l~~~lTV~ 169 (679)
.++|+++++|++++|+||||||||||+|+|+|+.++ .+| + |.++|. .++.++|+||+.. +.+.+||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcCC-----ccCCeeeeccchhhcccccccchh
Confidence 379999999999999999999999999999999875 478 8 999883 3677999999984 45567999
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH--HhhCCCe----EEEeC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE--MLINPSL----LILDE 243 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a--L~~~P~l----llLDE 243 (679)
||+ |+....... . ..+++.++++.+|+.+..+ +..|||||||||+||++ |+.+|++ |||||
T Consensus 201 eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDE 267 (460)
T 2npi_A 201 LPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDT 267 (460)
T ss_dssp CTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEEC
T ss_pred hhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeC
Confidence 998 643321110 0 1233556777888876543 45799999999999999 9999999 99999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc--H---HHHHhCCe-----EEEEe-CCeEEEecChhhH
Q 005754 244 -PTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS--S---RVYQMFDK-----VLVLS-EGRCLYFGKGSEA 305 (679)
Q Consensus 244 -PtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~--~---~i~~~~D~-----v~lL~-~G~iv~~G~~~~~ 305 (679)
||++||+. ...+.+++++ .|.|+|+++|+.. . ++.+++|+ |++|+ +|+++ .|++++.
T Consensus 268 pPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 268 PSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred CcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999999 5555555544 3789999999976 1 46689999 99999 99999 8988655
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-25 Score=240.64 Aligned_cols=84 Identities=31% Similarity=0.401 Sum_probs=77.5
Q ss_pred ccCcccCHHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC
Q 005754 213 SFIRGISGGERKRVSIAHEML------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286 (679)
Q Consensus 213 ~~~~~LSgGerqRv~IA~aL~------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D 286 (679)
+.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||++||++. ..+.+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 456789999999999999999 699999999999999999999999999999888999999999974 468899
Q ss_pred eEEEEeCCeEEE
Q 005754 287 KVLVLSEGRCLY 298 (679)
Q Consensus 287 ~v~lL~~G~iv~ 298 (679)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-28 Score=242.34 Aligned_cols=146 Identities=20% Similarity=0.298 Sum_probs=102.9
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC-CCccccccCcEEEEecCCCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN-NKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g-~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
+.|+++.+|+|+ ++||+++|+||||||||||||+|+|+ +|+.| +|.... .......++.+||++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G---~I~~~~~~~~~~~~~~~ig~v~q~~---- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK---QVSRIILTRPAVEAGEKLGFLPGTL---- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT---SCSEEEEEECSCCTTCCCCSSCC------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC---eeeeEEecCCchhhhcceEEecCCH----
Confidence 456778899996 89999999999999999999999999 77543 331100 011123467799999975
Q ss_pred CCCHHHHH-HHHh----hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 165 HLTVRETL-VFCS----LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 165 ~lTV~E~l-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+||+ .+.. .+. .... .++++++++. | + ||||||+|||||+.+|++|
T Consensus 76 ----~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~ll 126 (208)
T 3b85_A 76 ----NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFV 126 (208)
T ss_dssp --------CTTTHHHHHHHT--TTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEE
T ss_pred ----HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEE
Confidence 4444 2211 111 0000 1234555543 2 2 9999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
||||||+| ++..+.+.|+++ ++|+||| +|||+.
T Consensus 127 lLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 127 ILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp EECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred EEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999999 899999999998 6789999 999964
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-24 Score=227.47 Aligned_cols=89 Identities=21% Similarity=0.229 Sum_probs=73.9
Q ss_pred cCcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeE-
Q 005754 214 FIRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKV- 288 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v- 288 (679)
.+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|++++ +|.|||++||++. +.+.||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEE
Confidence 45689999999999999997 5789999999999999999999999999985 4899999999953 67899987
Q ss_pred -EEEeCCeE-EEecChhhH
Q 005754 289 -LVLSEGRC-LYFGKGSEA 305 (679)
Q Consensus 289 -~lL~~G~i-v~~G~~~~~ 305 (679)
++|.+|+. +.....+++
T Consensus 293 ~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEESSSCEEEEECCC---
T ss_pred EEEEeCCEEEEEEEEcchh
Confidence 77887754 444555443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-25 Score=211.97 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=100.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCC-CCCCHHHHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY-PHLTVRETLVF 174 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~-~~lTV~E~l~~ 174 (679)
||||++++||+++|+||||||||||+|++.+-.. .+++ ... .|+++|++... ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~---------~~~~----d~~---~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE---------VISS----DFC---RGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG---------EEEH----HHH---HHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe---------EEcc----HHH---HHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999998653211 1111 011 25666654210 0001111111
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH---
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST--- 251 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~--- 251 (679)
...+ .....|.....+. ....|||||||++||++++.+|++++|||||++||+.
T Consensus 64 ----------------~~~~-~~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIVS-KRLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHHH-HHHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHHH-HHHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1111 1223354433322 2346999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 252 -------------AAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 252 -------------~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
....+.+.|++++++|.|+|++||++.
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 669999999999877999999999964
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-26 Score=252.84 Aligned_cols=170 Identities=18% Similarity=0.220 Sum_probs=133.4
Q ss_pred cceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccccc
Q 005754 91 RTILNGITGMVSPGE--------------------ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge--------------------~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~ 150 (679)
+.+|++||+++++|+ +++|+||||||||||+|+|+|+.+|+ +|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC-------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc---e
Confidence 568999999999999 99999999999999999999998864 577777775432 1
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHH--HHHHHHH
Q 005754 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGG--ERKRVSI 228 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~I 228 (679)
.++++|++ .++.+|+.|++.+.. + +.+++++++.+++.+... . +. |||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~-~-----~~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDF-F-----II-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSE-E-----EE-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCC-e-----EE-eCCCCccHHHHHH
Confidence 27899985 577889999875431 1 124678899999876422 1 22 9999 9999999
Q ss_pred HHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEeCCccH-HHHHhCCeE
Q 005754 229 AHEMLI----------NPSLLILDEPTSGLDSTAAYRLVSTLGSLV-----QRG----KTIVTSMHQPSS-RVYQMFDKV 288 (679)
Q Consensus 229 A~aL~~----------~P~lllLDEPtsgLD~~~~~~i~~~L~~l~-----~~g----~tii~~tH~~~~-~i~~~~D~v 288 (679)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.+++|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999985 333 678899998642 144444443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-24 Score=207.87 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=102.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTL 184 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 184 (679)
.++|+||||||||||+|+|+|++.. ...|... .... ...++.+||++|+. ++.+++ + +.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhh------
Confidence 5899999999999999999998752 2334321 1111 13456799999975 222332 1 110
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCHHHHHHHH
Q 005754 185 STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHE-----MLINPSLLILDE--PTSGLDSTAAYRLV 257 (679)
Q Consensus 185 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~a-----L~~~P~lllLDE--PtsgLD~~~~~~i~ 257 (679)
+... +... ++.+..||||||||++||++ |+.+|++++||| ||++||+.....+.
T Consensus 63 ----------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 63 ----------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp ----------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred ----------------cCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0000 0111 23456799999999999996 999999999999 99999999999999
Q ss_pred HHHHHHHhCCcEEEEEeC--CccHHHHHhCCeEEEEeCCeEEE
Q 005754 258 STLGSLVQRGKTIVTSMH--QPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 258 ~~L~~l~~~g~tii~~tH--~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
+.|++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 88875 4777888886 234567788887 4566655
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-27 Score=245.78 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=128.3
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
..+++++.|+ +.+|+|+|++|++|++++|+||||||||||+++|+|++ +|+| ++|++|+
T Consensus 103 ~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I--------------~~~v~q~ 161 (305)
T 2v9p_A 103 NYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV--------------LSFANHK 161 (305)
T ss_dssp HHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE--------------ECGGGTT
T ss_pred EEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE--------------EEEecCc
Confidence 4567777787 67999999999999999999999999999999999987 3566 3456777
Q ss_pred CCCCCCCCHHH-HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 160 DILYPHLTVRE-TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 160 ~~l~~~lTV~E-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
+.+++. |++| |+.+... .+. .+.+.++.+ |.+..| +..|||||||| ||||+.+|+|
T Consensus 162 ~~lf~~-ti~~~ni~~~~~------~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~i 218 (305)
T 2v9p_A 162 SHFWLA-SLADTRAALVDD------ATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPL 218 (305)
T ss_dssp SGGGGG-GGTTCSCEEEEE------ECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCE
T ss_pred cccccc-cHHHHhhccCcc------ccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCE
Confidence 777664 7776 7655311 111 344555554 444333 34799999999 9999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHc
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESV 312 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~ 312 (679)
|| ||+||+.++..+.. .+|++. ..+.+|+| +|++|++++.|+++++..+|.++
T Consensus 219 Ll----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 219 LV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp EE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred EE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 99 99999999988862 188875 46789999 99999999999999986666543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-26 Score=231.47 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=120.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+.+.+++| .++++||+++|+||||||||||+|+|+|+++. ..+.+.+.+.+.....++.++|++|++.+++.+|+
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 34567888 79999999999999999999999999998752 22222222222222235679999999888888888
Q ss_pred HHHHHHHhhhcC---CCCCCHHHHHHHHHHH------HHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 169 RETLVFCSLLRL---PRTLSTKEKTSIAEAV------MAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 169 ~E~l~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
.|++........ ....++++.++++++. ++.+|+.+.++ ..++.|| +|+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~lS-----------~l~~~p~~~ 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKK-----TMPEAVT-----------VFLAPPSWQ 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHH-----HCTTSEE-----------EEEECSCHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHH-----hcCCcEE-----------EEEECCCHH
Confidence 877642110000 0012344455555554 44455543332 2344566 899999999
Q ss_pred EEeCCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 240 ILDEPTSGL----DSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 240 lLDEPtsgL----D~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+|||||+|+ |+..+..+.+.++++.+ .|.|+|++||++. ++.++||++++|.+
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 999999998 78899999999999975 5899999999965 68999999999853
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-23 Score=218.55 Aligned_cols=174 Identities=16% Similarity=0.143 Sum_probs=133.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc--cCcEEEEecCCC-
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI--SKRTGFVTQDDI- 161 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~--~~~i~yv~Q~~~- 161 (679)
.++++|+++++|++++|+||||||||||++.|+|+++++ .|+|.++|.+..+ .+ ++.++|++|++.
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 346789999999999999999999999999999998763 5889998876532 11 346999999988
Q ss_pred CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC--eE
Q 005754 162 LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS--LL 239 (679)
Q Consensus 162 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~--ll 239 (679)
++|.+||+|++.++.... . ...+++.+|+.+..+.. +++|| |||++||++|+.+|+ +|
T Consensus 166 ~~~~~~v~e~l~~~~~~~----~--------d~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lL 225 (302)
T 3b9q_A 166 AKAATVLSKAVKRGKEEG----Y--------DVVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILL 225 (302)
T ss_dssp CCHHHHHHHHHHHHHHTT----C--------SEEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEEE
T ss_pred cCHHHHHHHHHHHHHHcC----C--------cchHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeEE
Confidence 889999999998753211 0 01345677877655444 44699 999999999999999 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCcc--------HHHHHhCCeEEEEeCCeE
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPS--------SRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~--------~~i~~~~D~v~lL~~G~i 296 (679)
+|| ||+|||+.+. ++++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 226 vLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 226 VLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred EEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999 9999999854 345553 5899999999432 223456678888888864
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-23 Score=230.13 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=150.9
Q ss_pred CccCCCCcccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC---cc------
Q 005754 77 SSTDDQGSTAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK---PT------ 146 (679)
Q Consensus 77 ~~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~---~~------ 146 (679)
.....+++++.|+ +..+|+++ +.+.+||+++|+|||||||||||++|+|+.++ ..|.|.++|+. ..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~---~~G~i~~~G~r~~ev~~~~~~~ 205 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA---DVIVVGLIGERGREVKDFIENI 205 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC---SEEEEEEESCCHHHHHHHHHTT
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEeceecHHHHHHHHhh
Confidence 3466778888887 67899999 99999999999999999999999999999876 37999999983 22
Q ss_pred ---ccccCcEEEEecC-CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH
Q 005754 147 ---KHISKRTGFVTQD-DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE 222 (679)
Q Consensus 147 ---~~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 222 (679)
..+++.++|++|+ +.+++.+||.+|+.+.+..... -+ .+.. ..+ .....+|+||
T Consensus 206 ~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~------------------~~-~~v~-~~l--d~l~~lS~g~ 263 (438)
T 2dpy_A 206 LGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD------------------RG-QHVL-LIM--DSLTRYAMAQ 263 (438)
T ss_dssp THHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT------------------TT-CEEE-EEE--ECHHHHHHHH
T ss_pred ccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh------------------CC-CCHH-HHH--HhHHHHHHHH
Confidence 1246789999995 5567788999999875432100 00 0100 001 1145699999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 223 RKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ---R-GK-----TIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 223 rqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
|||+|| +.+|++ |+|||+.....+.+.++++.+ + |+ ||++++||.+ ..++|++++|.+
T Consensus 264 -qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d 330 (438)
T 2dpy_A 264 -REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD 330 (438)
T ss_dssp -HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS
T ss_pred -HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC
Confidence 999999 889988 999999999999999999876 3 74 9999999986 467999999999
Q ss_pred CeEEEecChhhH
Q 005754 294 GRCLYFGKGSEA 305 (679)
Q Consensus 294 G~iv~~G~~~~~ 305 (679)
|+++..|++.+.
T Consensus 331 G~Ivl~~~~~~~ 342 (438)
T 2dpy_A 331 GHIVLSRRLAEA 342 (438)
T ss_dssp EEEEECHHHHHT
T ss_pred cEEEEeCCHHHc
Confidence 999999987664
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.6e-21 Score=223.20 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005754 189 KTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP--SLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265 (679)
Q Consensus 189 ~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~ 265 (679)
..++++ .++.+||.+. .++ .+.+|||||||||.||++|..+| ++|+|||||+|||+...+.+.++|++|++
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~ 429 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR 429 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH
Confidence 344555 5788999764 343 45579999999999999999999 59999999999999999999999999998
Q ss_pred CCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 266 RGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 266 ~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
.|.|||+++|++. +.+.+|+|++| .+|++++.|+++++.
T Consensus 430 ~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 430 GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 8999999999963 56789999999 789999999988753
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=203.44 Aligned_cols=86 Identities=22% Similarity=0.169 Sum_probs=77.6
Q ss_pred CccCc-ccCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHH
Q 005754 212 NSFIR-GISGGERKRVSIAHEML---------INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRV 281 (679)
Q Consensus 212 ~~~~~-~LSgGerqRv~IA~aL~---------~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i 281 (679)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 44566 79999999999999999 8999999999999999999999999998874 799999994 32
Q ss_pred HHhCCeEEEEeCCeEEEecChhhH
Q 005754 282 YQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 282 ~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=198.68 Aligned_cols=78 Identities=28% Similarity=0.400 Sum_probs=70.4
Q ss_pred ccCcccCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC
Q 005754 213 SFIRGISGGERK------RVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286 (679)
Q Consensus 213 ~~~~~LSgGerq------Rv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D 286 (679)
+.++.||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.++|.|||++||++ ++...||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 456789999999 66777888889999999999999999999999999999987789999999995 3688999
Q ss_pred eEEEEe
Q 005754 287 KVLVLS 292 (679)
Q Consensus 287 ~v~lL~ 292 (679)
++++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-22 Score=213.00 Aligned_cols=172 Identities=16% Similarity=0.152 Sum_probs=132.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc--cCcEEEEecCCC-CC
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI--SKRTGFVTQDDI-LY 163 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~--~~~i~yv~Q~~~-l~ 163 (679)
+++|+++++|++++|+||||||||||++.|+|++++. .|+|.++|.+..+ .+ ++.++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688999999999999999999999999999998763 5889998876532 11 346999999988 88
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC--eEEE
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS--LLIL 241 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~--lllL 241 (679)
|.+|++|++.++.... .. ..+++.+|+.+..+.. +++|| |||++|||+|+.+|+ +|+|
T Consensus 225 p~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp HHHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHH-----HHHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred hhhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhH-----HHHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 9999999998754211 00 1245667877655443 44699 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCcc--------HHHHHhCCeEEEEeCCeE
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPS--------SRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~--------~~i~~~~D~v~lL~~G~i 296 (679)
| ||+|||+.+.. +++.+ .|.|+|++||... +......+.|..+..|+.
T Consensus 285 D-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 285 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred c-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999998653 44543 5899999999421 223456678888888764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-23 Score=214.28 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=95.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTL 184 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 184 (679)
.++|+||||||||||+|+|+|+..| .+|++.++|.+... ..++.++|++|++.+++.+||.||+.|+..... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~---~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS---RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--EN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HH
Confidence 4799999999999999999999876 37899999876543 345689999999999999999999988654321 11
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005754 185 STKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264 (679)
Q Consensus 185 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~ 264 (679)
. .+.+.+.++ .+..+. ....||||||||++|||+++. ++++|||++|||+.. .+.++++.
T Consensus 79 ~----~~~i~~~~~----~~~~~~-----~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~ 138 (270)
T 3sop_A 79 C----WEPIEKYIN----EQYEKF-----LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS 138 (270)
T ss_dssp C----SHHHHHHHH----HHHHHH-----HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH
T ss_pred H----HHHHHHHHH----HHHHhh-----hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH
Confidence 1 112222222 122222 234799999999999999876 999999999999987 55666666
Q ss_pred hCCcEEEEEeCCc
Q 005754 265 QRGKTIVTSMHQP 277 (679)
Q Consensus 265 ~~g~tii~~tH~~ 277 (679)
+. .+||+++|..
T Consensus 139 ~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 139 KV-VNIIPVIAKA 150 (270)
T ss_dssp TT-SEEEEEETTG
T ss_pred hc-CcEEEEEecc
Confidence 66 8999999874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-22 Score=211.21 Aligned_cols=133 Identities=19% Similarity=0.256 Sum_probs=107.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+++++++|+.+++|++++|+||||||||||||+|+|+++|+ +|.|.++|.+... ..++.+++++
T Consensus 158 ~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~~~~i~~~~----------- 223 (330)
T 2pt7_A 158 EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHHKNYTQLFF----------- 223 (330)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSCSSEEEEEC-----------
T ss_pred HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccchhEEEEEe-----------
Confidence 34899999999999999999999999999999999999863 6899998864211 1223334332
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
+ |||+||++||++|..+|++|++||||+
T Consensus 224 ------------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-- 251 (330)
T 2pt7_A 224 ------------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-- 251 (330)
T ss_dssp ------------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred ------------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence 1 899999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeE
Q 005754 249 DSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 249 D~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~i 296 (679)
.++.+.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+.
T Consensus 252 -----~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 -----SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp -----THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred -----HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2356777777654568999999976 5788999999988753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-24 Score=217.45 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=99.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-----ccccCcEEEEecCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-----KHISKRTGFVTQDDILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-----~~~~~~i~yv~Q~~~l~~~ 165 (679)
..-|+||||++++|++++|+||||||||||+|+|+|+. | |++.+ |.+.. ...++.++|++|++.+|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 45799999999999999999999999999999999987 4 45666 54432 1234679999998766654
Q ss_pred CC-HHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHH-----HHHHhhCCCe
Q 005754 166 LT-VRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSI-----AHEMLINPSL 238 (679)
Q Consensus 166 lT-V~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~I-----A~aL~~~P~l 238 (679)
++ +.+++.+. ..... ...+. +.++++++...+. .+. ..+|||||||++| +++|+.+|++
T Consensus 83 ~~~~~~~l~~~-~~~~~~~g~~~----~~i~~~l~~~~~~-----il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYANNFYGTLK----SEYDKAKEQNKIC-----LFE----MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HHHTTCEEEEE-EETTEEEEEEH----HHHHHHHHTTCEE-----EEE----ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred hhhccchhhhh-hcccccCCCcH----HHHHHHHhCCCcE-----EEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 33 11121110 00000 01111 2355666543321 111 3699999999999 8999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQ 265 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~ 265 (679)
++|||||+++|..+...+.+.|+++.+
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999887754
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-23 Score=223.33 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=98.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 180 (679)
+++|++++|+||||||||||+++|+|++++.. |. +.+++|+|++.+++. |++||+.+....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~---------G~-------~~v~~v~qd~~~~~~-t~~e~~~~~~~~-- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWD---------HH-------PRVDLVTTDGFLYPN-AELQRRNLMHRK-- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTST---------TC-------CCEEEEEGGGGBCCH-HHHHHTTCTTCT--
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccC---------CC-------CeEEEEecCccCCcc-cHHHHHHHHHhc--
Confidence 79999999999999999999999999987631 21 468999999999988 999998542211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 181 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
..+.....+.+.+.|+.++ ....+.. +..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1222233456778888887 4433333 347999999999999999999999999999999986
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-21 Score=200.80 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=120.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeee-EEEE-CCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTG-TILT-NNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G-~i~~-~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
..+|+++++.+++|++++|+||||||||||++.|+|...+. .| .+.+ ++......+++++..+.|+.. +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 45899999999999999999999999999999999988653 24 4433 333222233333333333321 123
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH-HHHHHHHHHHhhCCCeEEEeCCCC-
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE-RKRVSIAHEMLINPSLLILDEPTS- 246 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~~~P~lllLDEPts- 246 (679)
.+++.... + +.++..+.++++++..++. +. ..+..+|.+| +||+. |+++..+|+++++||||+
T Consensus 95 ~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~------i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-I------ENGKFDQWFDELFGNDTFH------LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-H------HHTHHHHHHHHHHSSSCEE------EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-C------CHHHHHHHHHHHhccCCEE------EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 33443221 0 1222333445444322221 11 1123588898 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHhC-CcEEEEEeCCcc-H--------------------HHHHhCCeEEEEeCCeE
Q 005754 247 --G---LDS-TAAYRLVSTLGSLVQR-GKTIVTSMHQPS-S--------------------RVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 247 --g---LD~-~~~~~i~~~L~~l~~~-g~tii~~tH~~~-~--------------------~i~~~~D~v~lL~~G~i 296 (679)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 6778899999999865 999999999951 2 57789999999998874
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-21 Score=199.23 Aligned_cols=180 Identities=9% Similarity=0.077 Sum_probs=110.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
.+++++|+|+||++++|+++||+||||||||||+++|+|++. .+.++ ..++.++|++|++ +++.+|
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc------ccCCceEEEeCCc-CccccC
Confidence 356789999999999999999999999999999999999652 12222 2467799999995 777899
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 247 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsg 247 (679)
+.|++.+...... ...+.....+.+.+.++.+ .+..+. .+..+|+||+||+.+ ++++.+|+++++|||...
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~ 145 (245)
T 2jeo_A 75 AEQKAKALKGQYN-FDHPDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVF 145 (245)
T ss_dssp HHHHHHHHTTCCC-TTSGGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTTT
T ss_pred HhHhhhhhccCCC-CCCcccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCcccc
Confidence 9999876432211 0001111123344455543 233333 345799999999988 588889999999999988
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHH-HhCCeEEEEeCCeEEEecChhhHHHHH
Q 005754 248 LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVY-QMFDKVLVLSEGRCLYFGKGSEAMSYF 309 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~-~~~D~v~lL~~G~iv~~G~~~~~~~~f 309 (679)
.|.. +.++ .+.+|++++|+.. .+. .+++++ ++|+ +.+++.+.+
T Consensus 146 ~~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 146 YSQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp TSHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred ccHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 8864 2222 3789999999733 343 334434 5564 566766544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-20 Score=220.24 Aligned_cols=138 Identities=25% Similarity=0.417 Sum_probs=108.4
Q ss_pred CCCCCHHHHHHHHhhhcCCCCC-C-H---HHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 163 YPHLTVRETLVFCSLLRLPRTL-S-T---KEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~-~-~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
+..+||.|++.|.....+.... . . ....+...+.|..+||... .+ +.+.+|||||||||+||++|+++|
T Consensus 409 ~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~-----r~~~~LSGGe~QRv~LAraL~~~p 483 (916)
T 3pih_A 409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLS-----RSATTLSGGESQRIRLATQIGSGL 483 (916)
T ss_dssp HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTT-----SBGGGCCHHHHHHHHHHHHHHTTC
T ss_pred hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccccc-----CCcccCCHHHHHHHHHHHHHhhCC
Confidence 3457888998875543322111 0 0 1112234567888999754 34 345579999999999999999988
Q ss_pred C--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHHH
Q 005754 237 S--LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAMS 307 (679)
Q Consensus 237 ~--lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~~ 307 (679)
+ +|||||||+|||+.....+++.|++++++|.|||+++||+. ....||+|++| ++|++++.|+++++.+
T Consensus 484 ~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 484 TGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 7 99999999999999999999999999888999999999963 34569999999 8999999999988753
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=205.29 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=71.5
Q ss_pred cCccc-CHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE
Q 005754 214 FIRGI-SGGERKRVSIAHEMLINP--SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290 (679)
Q Consensus 214 ~~~~L-SgGerqRv~IA~aL~~~P--~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l 290 (679)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||++||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35567 999999999999999999 99999999999999999999999999987 899999999964 4567999999
Q ss_pred EeCC
Q 005754 291 LSEG 294 (679)
Q Consensus 291 L~~G 294 (679)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-20 Score=200.05 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=138.1
Q ss_pred ccCCCCcccccc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---------
Q 005754 78 STDDQGSTAKIQ-ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------- 147 (679)
Q Consensus 78 ~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------- 147 (679)
....+++++.|+ +..+|+++ +.|.+||+++|+||||||||||+++|+|..+++ .|.+.+.|++..+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSC
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhh
Confidence 445667778887 67899999 999999999999999999999999999998763 6888888865211
Q ss_pred --cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH
Q 005754 148 --HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225 (679)
Q Consensus 148 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 225 (679)
.+++.+.+++|.+. +..+.+.-... .....+.....+ .+..+--..+..||+|| ||
T Consensus 121 ~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~ 178 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RD 178 (347)
T ss_dssp HHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HH
T ss_pred hhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HH
Confidence 13455788887542 23332221100 000111111111 11111012356799999 89
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEeCCccHHHHHhCCeEEEEeCCeEEE
Q 005754 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ--RGK-----TIVTSMHQPSSRVYQMFDKVLVLSEGRCLY 298 (679)
Q Consensus 226 v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tii~~tH~~~~~i~~~~D~v~lL~~G~iv~ 298 (679)
+++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||.. ..+||++++|.+|+++.
T Consensus 179 v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 179 VGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp HHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEB
T ss_pred HHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEE
Confidence 9999 688887 999999999999999999974 487 9999999976 46799999999999999
Q ss_pred ecChhhH
Q 005754 299 FGKGSEA 305 (679)
Q Consensus 299 ~G~~~~~ 305 (679)
.|+..+.
T Consensus 247 ~~~l~~~ 253 (347)
T 2obl_A 247 TRELAEE 253 (347)
T ss_dssp CHHHHTT
T ss_pred eCCHHHc
Confidence 9987764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-19 Score=204.58 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=118.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL 177 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 177 (679)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.+++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~-------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE-------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC-------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC-------------CEEEEEEeCCH----HHHHHHHH----
Confidence 4589999999999999999999999999987642 21 12455666531 12222221
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH-----H
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST-----A 252 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~-----~ 252 (679)
+.. .+. ++ +...|+.+..+ ..+..|||||+||+.+|+++..+|+++++| ||+|||.. .
T Consensus 330 -~~g--~~~-------~~-~~~~g~~~~~~-----~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MDF-------EE-MERQNLLKIVC-----AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CCH-------HH-HHHTTSEEECC-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CCH-------HH-HHhCCCEEEEE-----eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 121 12 22345544333 345679999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCcc---------HHHHHhCCeEEEEeCCe
Q 005754 253 AYRLVSTLGSLVQRGKTIVTSMHQPS---------SRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 253 ~~~i~~~L~~l~~~g~tii~~tH~~~---------~~i~~~~D~v~lL~~G~ 295 (679)
+..+.++++.+++.|.|||+++|+.. ..+..++|+|++|++|+
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999988999999999971 34667899999999886
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-20 Score=225.34 Aligned_cols=165 Identities=19% Similarity=0.121 Sum_probs=116.6
Q ss_pred ccccc-cccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEE-
Q 005754 84 STAKI-QERTILNGITGMVSP-------GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTG- 154 (679)
Q Consensus 84 ~~~~~-~~~~iL~~vs~~i~~-------Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~- 154 (679)
+.+.+ +++.+++|+++.+++ |++++|+||||||||||||+| |++.+ ..++|
T Consensus 761 l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~ 820 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGC 820 (1022)
T ss_dssp ------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTC
T ss_pred EEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeE
Confidence 34444 456799999999987 999999999999999999999 87652 12345
Q ss_pred EEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 155 FVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 155 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
||||+.. .+||.|++.. + +|+.+.... ....+|+++++ +++|+++++
T Consensus 821 ~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~stf~~em~~-~a~al~la~ 867 (1022)
T 2o8b_B 821 YVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GESTFFVELSE-TASILMHAT 867 (1022)
T ss_dssp CEESSEE---EECCCSBEEE----E--------------------CC--------------CHHHHHHHH-HHHHHHHCC
T ss_pred EeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhhhHHHHHH-HHHHHHhCC
Confidence 9999753 4566555421 1 121111110 12357777665 999999999
Q ss_pred CCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEE--EecChh
Q 005754 235 NPSLLILDEPTSGLDSTAA-YRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCL--YFGKGS 303 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv--~~G~~~ 303 (679)
+|+++|||||++|+|+... ..+.++|+.++++ |.++|++||+.. .+...+|++.++ +|++. +.|+++
T Consensus 868 ~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 868 AHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp TTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC------
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCcc
Confidence 9999999999999999985 5578999999876 999999999964 467789998887 48887 455543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-22 Score=225.36 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=120.0
Q ss_pred ccccccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEecC
Q 005754 86 AKIQERTILNGITG-MVSPGEILAILGPSGSGKSTMLNV--LAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVTQD 159 (679)
Q Consensus 86 ~~~~~~~iL~~vs~-~i~~Ge~~allGpnGsGKSTLL~~--L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~Q~ 159 (679)
+-.++.++|++||+ .+++||+++|+||||||||||+++ ++|+.+|+ +|.|+++|.+... ..++.+||++|+
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEETPQDIIKNARSFGWDLAK 96 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCHHHHHHHHGGGTCCHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCCHHHHHHHHHHcCCChHH
Confidence 33456789999999 999999999999999999999999 78988753 6899999987432 234578999997
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
....+ ++.+ ..... . +...++++.++|.+..+ +.++.|||| +|+++
T Consensus 97 ~~~~~------~l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~-----~~~~~LS~g-------------~~~~l 142 (525)
T 1tf7_A 97 LVDEG------KLFI---LDASP--D-----PEGQEVVGGFDLSALIE-----RINYAIQKY-------------RARRV 142 (525)
T ss_dssp HHHTT------SEEE---EECCC--C-----SSCCSCCSSHHHHHHHH-----HHHHHHHHH-------------TCSEE
T ss_pred hhccC------cEEE---EecCc--c-----cchhhhhcccCHHHHHH-----HHHHHHHHc-------------CCCEE
Confidence 54211 1110 00000 0 00011122222222111 112235554 58899
Q ss_pred EEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHH--------HHHhCCeEEEEeCC
Q 005754 240 ILDEPTS-----GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSR--------VYQMFDKVLVLSEG 294 (679)
Q Consensus 240 lLDEPts-----gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~--------i~~~~D~v~lL~~G 294 (679)
++||||+ +||+..+..+.++++++++.|+|||+++|++... ...+||+|++|++|
T Consensus 143 ilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 143 SIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp EEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred EECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 9999998 4699999999999999988899999999997642 34569999999983
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=205.91 Aligned_cols=135 Identities=26% Similarity=0.394 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHhhhcCCCC---CCH---HHHHHHHHHHHHHcCCCcc-ccccccCccCcccCHHHHHHHHHHHHHhhCC
Q 005754 164 PHLTVRETLVFCSLLRLPRT---LST---KEKTSIAEAVMAELGLTKC-ENTIIGNSFIRGISGGERKRVSIAHEMLINP 236 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P 236 (679)
..+||.|++.|...+.++.. ... ++..+++ +.|+.+||... .++ .+.+|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCC
Confidence 46899999999766643220 000 2334455 45889999753 444 45579999999999999999985
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEE------eCCeEEEecChhhHH
Q 005754 237 --SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVL------SEGRCLYFGKGSEAM 306 (679)
Q Consensus 237 --~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL------~~G~iv~~G~~~~~~ 306 (679)
++|+|||||+|||+...+.+++.|++|++.|.|||+++|++. ....||+|++| .+|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999963 35689999999 789999999998753
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-19 Score=211.23 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=111.8
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+++.+++|+++.+++|++++|+||||||||||||++++..-. ...| ...... ...++.+ +.
T Consensus 647 ~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G------~~vpa~-~~~~~~~---d~------- 707 (934)
T 3thx_A 647 EIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIG------CFVPCE-SAEVSIV---DC------- 707 (934)
T ss_dssp -CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHT------CCBSEE-EEEEECC---SE-------
T ss_pred CceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcC------Cccccc-cccchHH---HH-------
Confidence 346799999999999999999999999999999999432110 0000 000000 0001110 00
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH--hhCCCeEEEeCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM--LINPSLLILDEPTS 246 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~P~lllLDEPts 246 (679)
++..+|+.+ ...+++|+|+++++.+|++| +++|+++||||||+
T Consensus 708 ---------------------------i~~~ig~~d--------~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~ 752 (934)
T 3thx_A 708 ---------------------------ILARVGAGD--------SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGR 752 (934)
T ss_dssp ---------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSC
T ss_pred ---------------------------HHHhcCchh--------hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCC
Confidence 111112211 11235888888888888888 99999999999999
Q ss_pred CCCHHHHHHH-HHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 247 GLDSTAAYRL-VSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 247 gLD~~~~~~i-~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|||+.....+ ..+++.+++ .|.|+|++||+. ++..++|++..+.+|++...++.+++
T Consensus 753 GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 753 GTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 9999999888 677788876 499999999995 36789999999999999988876653
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=162.62 Aligned_cols=83 Identities=28% Similarity=0.392 Sum_probs=74.2
Q ss_pred CccCcccCHHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 212 NSFIRGISGGERKRVSIA------HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 212 ~~~~~~LSgGerqRv~IA------~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
++.+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ ++.+.|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 456778999999999886 899999999999999999999999999999999987799999999996 367899
Q ss_pred CeEEEEe--CCeE
Q 005754 286 DKVLVLS--EGRC 296 (679)
Q Consensus 286 D~v~lL~--~G~i 296 (679)
|++++|+ +|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 9999994 5643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-19 Score=183.17 Aligned_cols=133 Identities=15% Similarity=0.274 Sum_probs=99.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
++|+++| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.+.....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 9999999999999999999999999998752 16889888765421111112222221
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
.+|+.. ..+ |++||++|..+|+++++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123321 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
+...++ +. ++.|.+|++++|+.+ +...+||++.|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 876544 33 356999999999965 5688999988854
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-19 Score=178.13 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=96.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCC--C--eeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHH
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGH--G--LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~--~--~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
+-+++||+++|+||||||||||+++|+|...+.. + ..+.+++++.... ..+.+++++|+..+.+. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 4689999999999999999999999999544311 1 2345666654310 01223344444333322 33333221
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH-HHHHHHHHHHhh-------CCCeEEEeCCCC
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE-RKRVSIAHEMLI-------NPSLLILDEPTS 246 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~~-------~P~lllLDEPts 246 (679)
. ...++++ ++++..+.+++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 1123333 333555555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHh-CCcEEEEEeCCcc---HHHHHhCCeEEEEeCCe
Q 005754 247 GLDST-------A-----AYRLVSTLGSLVQ-RGKTIVTSMHQPS---SRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 247 gLD~~-------~-----~~~i~~~L~~l~~-~g~tii~~tH~~~---~~i~~~~D~v~lL~~G~ 295 (679)
++|+. . ..++++.|+++++ .|.|||+++|... ..+...+|+++.|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99984 2 2378888888865 4999999999532 13678899999998753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-18 Score=203.90 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=104.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
++.|++|+|+++++|++++|+||||||||||||++++..... ..| ...... ...++. -+.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~~vpa~-~~~i~~---~d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------SYVPAE-EATIGI---VDGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------CCBSSS-EEEEEC---CSEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------ccccch-hhhhhH---HHHHHHhCChH
Confidence 467999999999999999999999999999999998753210 011 000000 011121 12222222222
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
+++. ...+.+|+||+|++.|+++ +++|+++||||||+|||
T Consensus 727 d~l~---------------------------------------~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNIY---------------------------------------KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHHH---------------------------------------HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 2110 1123589999999999988 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEE-EeCCeEEE
Q 005754 250 STAAYRLV-STLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLV-LSEGRCLY 298 (679)
Q Consensus 250 ~~~~~~i~-~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~l-L~~G~iv~ 298 (679)
+.....+. .+++.+++ .|.|+|++||++. +.+++|+.-- +.++++.+
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 99999997 77888865 5999999999964 4566665421 33444433
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-20 Score=185.97 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=114.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCC--CCCCHHHHHHHHhhh
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY--PHLTVRETLVFCSLL 178 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~ 178 (679)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|+++++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 478999999999999999999999998652 489999998776 5689999875431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH----HHHHHHHHHHhhCCCeEEEeCCCCC-------
Q 005754 179 RLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE----RKRVSIAHEMLINPSLLILDEPTSG------- 247 (679)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe----rqRv~IA~aL~~~P~lllLDEPtsg------- 247 (679)
..+ .....+++.+.++.+++.+..+.+ ...+|+|| +||+++|++++.+|+++++||||++
T Consensus 60 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHP----DAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSG----GGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CCh----hhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111 112234566778888887654443 34689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCcEEEEEeCCcc
Q 005754 248 LDSTAAYRLVSTLGSL-VQRGKTIVTSMHQPS 278 (679)
Q Consensus 248 LD~~~~~~i~~~L~~l-~~~g~tii~~tH~~~ 278 (679)
||+.....+.+.+++. .++|+|++.++|+..
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999886 456999999999743
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-19 Score=191.69 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=87.2
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC-cCCCCCeeeEEEECCCCcccc-ccCcEEEEecCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR-LHQGHGLTGTILTNNNKPTKH-ISKRTGFVTQDD 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~-~~~~~~~~G~i~~~g~~~~~~-~~~~i~yv~Q~~ 160 (679)
+++++|+++.++++++++| +|+||||+|||||++.|+|. ..+ .+| +.++|.+.... ..+.+++++|++
T Consensus 3 ~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ---------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC--
T ss_pred CCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC---CCC-cccCCcccCCcceEeeEEEEecCC
Confidence 4567788899999999998 99999999999999999997 554 355 66666554321 135689999998
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEE
Q 005754 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 240 (679)
Q Consensus 161 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lll 240 (679)
.....+|+.|+..++.... ..+..+..++.+.+. . +.+.+++|||||||+.+||+++ +++
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~-----~~e~~~~l~~~l~~~------~-----~~~~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAIN-----CRDCFKTIISYIDEQ------F-----ERYLHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp -CCEEEEEEEEC----------------CTTHHHHHHHH------H-----HHHHHHHTSSCCTTCCCCCCCE----EEE
T ss_pred CcccCcchhhhhhhhhhcC-----cHHHHHHHHHHHHHH------H-----HHHHHHhCHHhhhhhhhhhhhh----eee
Confidence 8888899999887753221 001111112222111 1 1334579999999999988875 999
Q ss_pred EeCCCCC-CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCcc
Q 005754 241 LDEPTSG-LDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 241 LDEPtsg-LD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~ 278 (679)
+||||++ ||+... +.++++.++ +.++|++.||..
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999984 999873 566666554 789999999964
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-18 Score=201.00 Aligned_cols=134 Identities=22% Similarity=0.222 Sum_probs=101.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC-CCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH-QGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~-~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
+++.+++|+|++ |++++|+||||||||||||+|+|+.. +. .|.+. . ..+..+++++| +++.++
T Consensus 564 ~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p-a~~~~i~~v~~---i~~~~~ 627 (765)
T 1ewq_A 564 RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P-AEEAHLPLFDG---IYTRIG 627 (765)
T ss_dssp TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S-SSEEEECCCSE---EEEECC
T ss_pred CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e-hhccceeeHHH---hhccCC
Confidence 346789999999 99999999999999999999999753 22 23211 1 12345777776 455566
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHH--hhCCCeEEEeCC-
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM--LINPSLLILDEP- 244 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL--~~~P~lllLDEP- 244 (679)
+.||+.. ++|+|+++++.+++++ +++|+++|||||
T Consensus 628 ~~d~l~~------------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpg 665 (765)
T 1ewq_A 628 ASDDLAG------------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVG 665 (765)
T ss_dssp C------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTT
T ss_pred HHHHHHh------------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 6665421 3789999999999999 999999999999
Q ss_pred --CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 245 --TSGLDSTAA-YRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 245 --tsgLD~~~~-~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
|++||..+. ..+++.|++ .|.|+|++||+.. ..+++
T Consensus 666 rGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 666 RGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC
T ss_pred CCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh
Confidence 999999875 578887766 5899999999953 44554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-18 Score=179.96 Aligned_cols=148 Identities=11% Similarity=0.079 Sum_probs=107.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc--cCcEEEEecCCCCCCCCCHHHHH
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI--SKRTGFVTQDDILYPHLTVRETL 172 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~--~~~i~yv~Q~~~l~~~lTV~E~l 172 (679)
+|++++|+||||||||||+++|+|+++|+ .|+|.++|.+... .+ ++.++|++|++.+.|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999874 5788998876422 11 34699999999888989999999
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 005754 173 VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252 (679)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~ 252 (679)
.++..... ...+++..|+.+..+ +-++..++||++|||+++.+|+.++| .||+.+
T Consensus 178 ~~~~~~~~------------d~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t 232 (304)
T 1rj9_A 178 QAMKARGY------------DLLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT 232 (304)
T ss_dssp HHHHHHTC------------SEEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB
T ss_pred HHHHhCCC------------CEEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH
Confidence 76432100 001223334433211 22455569999999999999995544 566666
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEeCCcc
Q 005754 253 AYRLVSTLGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 253 ~~~i~~~L~~l~~~-g~tii~~tH~~~ 278 (679)
..++++.++++.+. |.|+|++||+..
T Consensus 233 ~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 233 GQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp CTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 66777778887654 899999999853
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-18 Score=197.74 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=110.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV 168 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV 168 (679)
+++.+++|+|++ ++|++++|+||||||||||||+|+|..... .. |..... .+..++++.| +++.+++
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~------G~~vpa-~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YI------GSYVPA-QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TT------TCCBSS-SEEEECCCCE---EEEEEC-
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hc------Ccccch-hcccceeHHH---HHhhCCH
Confidence 346799999999 999999999999999999999999974321 01 111111 1234566555 4555666
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 005754 169 RETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 248 (679)
Q Consensus 169 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgL 248 (679)
.|++... + +.+|+|+++ ++.+..++++|+++|||||++|+
T Consensus 660 ~d~l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gt 699 (800)
T 1wb9_A 660 ADDLASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGT 699 (800)
T ss_dssp -------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCS
T ss_pred HHHHHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCC
Confidence 6654321 1 135666654 44445678999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 249 DSTAAYRL-VSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 249 D~~~~~~i-~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|+.....+ .++++.+.+ .|.++|++||+.. +..++|++..+.+|++.+...
T Consensus 700 d~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 700 STYDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 99888776 788888887 4999999999964 457889887778888766543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-18 Score=180.91 Aligned_cols=165 Identities=21% Similarity=0.230 Sum_probs=102.9
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhcCc--CCCC-CeeeE-EEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 93 ILNGI-TGMVSPGEILAILGPSGSGKSTMLNVLAGRL--HQGH-GLTGT-ILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 93 iL~~v-s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~--~~~~-~~~G~-i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
.|+++ ++.+++|++++|+||||||||||++.|++.. +|+. +..|. +++++.... .++++++++|...+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 45555 5899999999999999999999999999976 3322 12366 778776431 13445666666544332 3
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-------hCCCeEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-------INPSLLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-------~~P~lll 240 (679)
+.||+.+... .-|.+|+|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~~---------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVARA---------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEEC---------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEec---------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 4443322100 01455667777777776 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 241 LDEPTSGLDSTA------------AYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 241 LDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
+||||++||+.. ..++++.|+++++ .|.|||+++|... .....++.......|+++.++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTT
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeec
Confidence 999999999852 4567777777765 5899999999854 343344455555566655444
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8e-16 Score=159.87 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=104.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
-+++|++++|+||||||||||++.|++.... |.+. .|..... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 4889999999999999999999999986542 3332 2333211 3457888766432 01222221 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHHHH---H
Q 005754 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS--GLDSTAA---Y 254 (679)
Q Consensus 180 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPts--gLD~~~~---~ 254 (679)
. .... ...+++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1122 235567788888765443 4557999998875 68889999999999999 9998544 8
Q ss_pred HHHHHHHHHHh-CCcEEEEEeCCcc
Q 005754 255 RLVSTLGSLVQ-RGKTIVTSMHQPS 278 (679)
Q Consensus 255 ~i~~~L~~l~~-~g~tii~~tH~~~ 278 (679)
++++.|+++++ .|.|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88899999874 5999999999853
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-17 Score=164.12 Aligned_cols=167 Identities=13% Similarity=0.145 Sum_probs=107.1
Q ss_pred cceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-ccccC---cEEEEecCCCCCCC
Q 005754 91 RTILNGITG-MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-KHISK---RTGFVTQDDILYPH 165 (679)
Q Consensus 91 ~~iL~~vs~-~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-~~~~~---~i~yv~Q~~~l~~~ 165 (679)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+. .|.+.+.+.+.. ....+ .+++.+|+.... .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K 84 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C
Confidence 346777775 79999999999999999999999999876532 233433322211 11100 111111110000 0
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC--eEEEeC
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS--LLILDE 243 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~--lllLDE 243 (679)
+++ ++.....++ .. .+ ....|.+|.++...+.....+|+ ++++||
T Consensus 85 ~~~------------------------~~~~~~~~~-~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 131 (235)
T 2w0m_A 85 LII------------------------IDALMKEKE-DQ----WS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDS 131 (235)
T ss_dssp EEE------------------------EECCC-----CT----TB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEET
T ss_pred EEE------------------------EeccccccC-ce----ee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 000 000000000 00 00 12359999998888887788999 999999
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHh-CCcEEEEEeCCcc-------HHHHHhCCeEEEEeCC
Q 005754 244 PTSGL--DSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPS-------SRVYQMFDKVLVLSEG 294 (679)
Q Consensus 244 PtsgL--D~~~~~~i~~~L~~l~~-~g~tii~~tH~~~-------~~i~~~~D~v~lL~~G 294 (679)
||+++ |+.....+++.|+++++ .|.|||+++|+.. ..+.++||++++|++.
T Consensus 132 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 132 VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99888 99999999999999975 5999999999962 2378899999999854
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-18 Score=170.36 Aligned_cols=156 Identities=13% Similarity=0.188 Sum_probs=100.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--ccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP 181 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 181 (679)
|++++|+||||||||||+++|+|+++ + +| +.++|.... ...++++||++|+. ... ++++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-
Confidence 78999999999999999999999886 3 35 556554332 23567899999975 111 1111 11100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHH-HHHH---HHhhCCCeEEEeC--CCCCCCHHHHH
Q 005754 182 RTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRV-SIAH---EMLINPSLLILDE--PTSGLDSTAAY 254 (679)
Q Consensus 182 ~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~IA~---aL~~~P~lllLDE--PtsgLD~~~~~ 254 (679)
+..+ ..+..++ ++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|.....
T Consensus 67 -------------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~ 126 (189)
T 2i3b_A 67 -------------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQ 126 (189)
T ss_dssp -------------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHH
T ss_pred -------------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHH
Confidence 0010 0111333 23456999999988 4444 5789999999999 89999987554
Q ss_pred HHHHHHHHHHhCCcEEEE----EeCCccHHHHHhCCeEEEEeCCeEEEec
Q 005754 255 RLVSTLGSLVQRGKTIVT----SMHQPSSRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 255 ~i~~~L~~l~~~g~tii~----~tH~~~~~i~~~~D~v~lL~~G~iv~~G 300 (679)
.+ +++.+...++|+ ++|+.+ ..+.|+|..+.+|+++...
T Consensus 127 ~l----~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 127 AV----RQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HH----HHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HH----HHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 44 444444555553 238753 2456777777888887644
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-17 Score=179.77 Aligned_cols=161 Identities=13% Similarity=0.103 Sum_probs=98.0
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEec
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQ 158 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q 158 (679)
+..+++++.|+++.+++|+||+| +|+||||||||||+|+|+|...+..+ .|.+.+++.. ....+.+++++|
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~--t~~~~~i~~v~q 82 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK--TVQVEQSKVLIK 82 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-------CCEEEEEECC--
T ss_pred EEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc--ceeeeeEEEEEe
Confidence 45667788888899999999998 99999999999999999998764322 2211111111 112346899999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC-
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS- 237 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~- 237 (679)
++.+++.+||.||+.+..... .......+.+.++ ..++.+++||++|||+++.+|+
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~ 139 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRV 139 (418)
T ss_dssp ----CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-C
T ss_pred cCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCe
Confidence 988888899999987753211 1111111111111 1366778899999999999999
Q ss_pred --eEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 238 --LLILDEPT-SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 238 --lllLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
++++|||| .|||+... +.++++.. +.+||+++|.
T Consensus 140 ~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 140 QCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp CEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred eEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 99999999 69999873 44455544 6777777775
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-17 Score=164.33 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=103.1
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCH----HHHH
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTV----RETL 172 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV----~E~l 172 (679)
-.-..++|++++|+||||||||||+|+|+|+.+|+ ...|.|.+.+.++....++.++|++|++..|+.+|+ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 34467899999999999999999999999988753 467888888776544345678999997655544443 2222
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 005754 173 VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTA 252 (679)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~ 252 (679)
.+. ++. .+.| +++ +.+++..++++||| ||+.+
T Consensus 88 ~~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 88 EVF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECHHH
Confidence 110 000 0112 121 34555668999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHH
Q 005754 253 AYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311 (679)
Q Consensus 253 ~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 311 (679)
+.++.+.+. ++.||++++|++.. +.+ |+ +.+| .++++++...+..
T Consensus 120 ~~~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 120 AQQIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 999999876 58999999999653 433 43 6777 5788887776643
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-16 Score=169.37 Aligned_cols=134 Identities=19% Similarity=0.304 Sum_probs=92.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.+|+++ ...+|++++|+|||||||||||++|+|.++++. .|.|...+.+.....+...++++|.......+|
T Consensus 113 ~~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~---- 184 (356)
T 3jvv_A 113 EVFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRDTLG---- 184 (356)
T ss_dssp HHHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSC----
T ss_pred HHHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccccCC----
Confidence 355555 568899999999999999999999999887531 345544333322222333445555432211111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
-.+ +||++|..+|++|++|||| |.+
T Consensus 185 ------------------------------------------------~~~----~La~aL~~~PdvillDEp~---d~e 209 (356)
T 3jvv_A 185 ------------------------------------------------FSE----ALRSALREDPDIILVGEMR---DLE 209 (356)
T ss_dssp ------------------------------------------------HHH----HHHHHTTSCCSEEEESCCC---SHH
T ss_pred ------------------------------------------------HHH----HHHHHhhhCcCEEecCCCC---CHH
Confidence 111 8999999999999999999 665
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCC
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEG 294 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G 294 (679)
+. +.+.++++.|.||++|+|+.+. + +.+||++.|..|
T Consensus 210 ~~----~~~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 210 TI----RLALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HH----HHHHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HH----HHHHHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 54 4444556779999999999763 4 889999988554
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-17 Score=188.25 Aligned_cols=165 Identities=14% Similarity=0.186 Sum_probs=110.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc-------cccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP-------TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~-------~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
++|+|||||||||||++|+|+..|. .+|.|.++|.+. ...+++.++|++|+..+++.+||+|++.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999997652 378888888663 1245678999999999999999999997753211
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC------CCCCCHHHH
Q 005754 180 LPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP------TSGLDSTAA 253 (679)
Q Consensus 180 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP------tsgLD~~~~ 253 (679)
... ..++.. +++.++.+....|+++++||| |+|||+..+
T Consensus 126 ~~~----------------~~~~s~-------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~ 170 (608)
T 3szr_A 126 AGE----------------GMGISH-------------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIG 170 (608)
T ss_dssp HCS----------------SSCCCS-------------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHH
T ss_pred cCC----------------ccccch-------------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHH
Confidence 000 001110 111122223358999999999 999999999
Q ss_pred HHHHHHHHHHHhC--CcEEEEEeCCcc------HHHHHh-----CCeEEEEeCCeEEEecChhhHHHH
Q 005754 254 YRLVSTLGSLVQR--GKTIVTSMHQPS------SRVYQM-----FDKVLVLSEGRCLYFGKGSEAMSY 308 (679)
Q Consensus 254 ~~i~~~L~~l~~~--g~tii~~tH~~~------~~i~~~-----~D~v~lL~~G~iv~~G~~~~~~~~ 308 (679)
..+.++++++.++ +.++++++|+.. ..+.+. ...|.++.++.++..|+.+++.+.
T Consensus 171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~ 238 (608)
T 3szr_A 171 YKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDV 238 (608)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHH
Confidence 9999999997543 788899999864 122222 245788999888888876554443
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-16 Score=151.45 Aligned_cols=172 Identities=15% Similarity=0.080 Sum_probs=95.8
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc-----CCCCCeeeEEEECCCCccccccCcEEEE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL-----HQGHGLTGTILTNNNKPTKHISKRTGFV 156 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~-----~~~~~~~G~i~~~g~~~~~~~~~~i~yv 156 (679)
+++++.|+ ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .+ ..|.+...+.. .....+-.
T Consensus 7 ~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~~~~~---~~~~~~~l- 76 (210)
T 1pui_A 7 QQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK---TPGRTQLINLF---EVADGKRL- 76 (210)
T ss_dssp ----CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEE---EEETTEEE-
T ss_pred hhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC---CCccceeeEEE---EecCCEEE-
Confidence 34444554 356777 888999999999999999999999999976 33 23333221100 00000111
Q ss_pred ecCCCCC----CCCC---HHHHHHHHhh-hcC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCccc
Q 005754 157 TQDDILY----PHLT---VRETLVFCSL-LRL----------PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGI 218 (679)
Q Consensus 157 ~Q~~~l~----~~lT---V~E~l~~~~~-~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 218 (679)
.+.+.+. +... .+..+..... .+. ....+. ....+.++++..++... .+++ +...+
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---~v~n-K~D~~ 150 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL---VLLT-KADKL 150 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE---EEEE-CGGGS
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE---EEEe-cccCC
Confidence 1111110 0000 1111211110 000 001121 22234455666666532 1222 24469
Q ss_pred CHHHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 005754 219 SGGERKR-VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269 (679)
Q Consensus 219 SgGerqR-v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 269 (679)
|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 151 s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 151 ASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp CHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred CchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 9999999 89999999999999999999999999999999999998766644
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=140.51 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=72.4
Q ss_pred cCcccCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEE
Q 005754 214 FIRGISGGERKRVSIAHEMLI----NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVL 289 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~~----~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~ 289 (679)
.+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++.+ +.++|++||+. .....+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 356799999999999999975 4699999999999999999999999999865 46899999985 4678999998
Q ss_pred EEe--CCeE-EEecChhhHH
Q 005754 290 VLS--EGRC-LYFGKGSEAM 306 (679)
Q Consensus 290 lL~--~G~i-v~~G~~~~~~ 306 (679)
.+. +|.. +...+.++..
T Consensus 138 ~v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEEETTEEEEEECCHHHHH
T ss_pred EEEecCCEEEEEEEEcHHHH
Confidence 664 5643 2333444433
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-15 Score=166.32 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=116.1
Q ss_pred cccccccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEI--LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDIL 162 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~--~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l 162 (679)
++.|++.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.... .... ...++.++|++|++.+
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~-~~~~-~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPAT-HTQP-GVQLQSNTYDLQESNV 93 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCS-SCEEEEEEEEEEC--C
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCC-CCCc-cceEeeEEEEeecCcc
Confidence 56777777 9999999999999 99999999999999999999742 121111 1111 1234579999999988
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cc--CccCcccCHHHH
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTK--------EKTSIAEAVMAEL-GLTK----CENTI----IG--NSFIRGISGGER 223 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSgGer 223 (679)
++.+||.||+.|+.. .... ...+..++.|... ++.. ..|+. +. ....++|+-.+
T Consensus 94 ~~~ltv~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D- 166 (427)
T 2qag_B 94 RLKLTIVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD- 166 (427)
T ss_dssp EEEEEEEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-
T ss_pred ccccchhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-
Confidence 889999999866432 1111 1233445556554 5432 12222 10 01124677766
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCC
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS-LVQRGKTIVTSMHQ 276 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tii~~tH~ 276 (679)
+.|+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 167 --ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 167 --LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred --HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 7899999999999999999999999999999999987 87789999988865
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-14 Score=138.42 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=98.8
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 93 ILNGIT-GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 93 iL~~vs-~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.|+++. +-+++|++++|+||||||||||++.|++ .. + .+.++ +..+.. .+..+-
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--~-~~v~~----------------i~~~~~----~~~~~~ 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--G-KKVAY----------------VDTEGG----FSPERL 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--C-SEEEE----------------EESSCC----CCHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--C-CcEEE----------------EECCCC----CCHHHH
Confidence 455555 3689999999999999999999999998 21 1 12233 322221 111111
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH--HHHHHHHHHHhhC-CCeEEEeCCCCCC
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE--RKRVSIAHEMLIN-PSLLILDEPTSGL 248 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRv~IA~aL~~~-P~lllLDEPtsgL 248 (679)
....... .... +++++.+.+ ...|+++ ++++..+++++.+ |+++++||||+++
T Consensus 63 ~~~~~~~----~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 63 VQMAETR----GLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHHHHTT----TCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHHHHhc----CCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 1110000 1111 122332211 1244443 6788888899986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CcEEEEEeCCcc------------HHHHHhCCeEEEEeCC
Q 005754 249 DSTA--------AYRLVSTLGSLVQR-GKTIVTSMHQPS------------SRVYQMFDKVLVLSEG 294 (679)
Q Consensus 249 D~~~--------~~~i~~~L~~l~~~-g~tii~~tH~~~------------~~i~~~~D~v~lL~~G 294 (679)
|+.. ..++++.|++++++ |.|||+++|... ..+...+|++++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9743 35567778888764 899999999754 1467899999999854
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-17 Score=163.18 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=110.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT 183 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 183 (679)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...++++|.....+.+|+.+++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~------~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ------LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH------SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc------cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 789999999999999999999972 246778877543221 234667776544455678888765432110
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccC---ccCccc--CHHHHHHHHHHH------HHhhCCCeEEEeCCCCCCCHHH
Q 005754 184 LSTKEKTSIAEAVMAELGLTKCENTIIGN---SFIRGI--SGGERKRVSIAH------EMLINPSLLILDEPTSGLDSTA 252 (679)
Q Consensus 184 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRv~IA~------aL~~~P~lllLDEPtsgLD~~~ 252 (679)
. -+.....+...+. +..+.+ |+|++|++.++. +++.+|+...+|| +||+..
T Consensus 71 --------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 --------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 0100001110000 011234 888888888888 9999999888884 899988
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeCC-ccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 253 AYRLVSTLGSLVQRGKTIVTSMHQ-PSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 253 ~~~i~~~L~~l~~~g~tii~~tH~-~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
... .+.++.+.+.+.++|.++|+ +. ++.+.||+|+ ++|+++..|+++-.
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 888 88888886668899999998 65 4788999999 99999999987643
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.7e-17 Score=157.14 Aligned_cols=153 Identities=15% Similarity=0.043 Sum_probs=95.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc--ccCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH--ISKRTGFVTQDDILYPHLTVRETLVFCSL 177 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~--~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 177 (679)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... .++.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 367999999999999999999999999722 57889988654221 1234677777543 45788888876432
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~ 257 (679)
....... ...++.++..+++..... . +..+..+|+|++||+.++|++..+|+++ +|+.....+.
T Consensus 78 ~~~~~~~-----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 RYAKEGY-----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp HHHHTSC-----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred HHhccCC-----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 1100000 000011111111111110 0 1123469999999999999999999876 6888888888
Q ss_pred HHHHHHHhCCcEEEEEeC
Q 005754 258 STLGSLVQRGKTIVTSMH 275 (679)
Q Consensus 258 ~~L~~l~~~g~tii~~tH 275 (679)
+.++.+.+.+..+|.++|
T Consensus 142 ~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HHTTCCGGGGGGEEECTT
T ss_pred HHHhccCcccccEEECCC
Confidence 877766443334444444
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.6e-15 Score=159.05 Aligned_cols=132 Identities=15% Similarity=0.285 Sum_probs=98.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.+|++++ +++|++++|+|||||||||||++|+|.++++ .+|.|...+.+.....++.+++|+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee-----------
Confidence 4677776 7899999999999999999999999988752 157887666554333456678888841
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+|+.. ..+ +.+|+++|..+|+++++|||+ |+.
T Consensus 191 ----------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 22211 124 468999999999999999999 776
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 252 AAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
+... .++. +..|.+|+.|+|+.+ +.+.+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6444 3433 356899999999954 677888887664
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-14 Score=156.82 Aligned_cols=137 Identities=12% Similarity=0.150 Sum_probs=100.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc--ccccCcEEEEe-cCCCCCCCCCHH
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT--KHISKRTGFVT-QDDILYPHLTVR 169 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~--~~~~~~i~yv~-Q~~~l~~~lTV~ 169 (679)
+++++|+.+++|++++|+||||||||||+|+|+|.++++ +|.|.++|.... ...++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 349999999999999999999999999999999999863 689999875321 12456789998 65331
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 249 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD 249 (679)
+++++..+|..|+.++..+|+.+++|||..
T Consensus 234 -----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~--- 263 (361)
T 2gza_A 234 -----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG--- 263 (361)
T ss_dssp ----------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS---
T ss_pred -----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH---
Confidence 012222356666667777899999999986
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCe
Q 005754 250 STAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 250 ~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~ 295 (679)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 ----~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ----GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ----THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3455667776554568899999964 567889998887764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-17 Score=164.82 Aligned_cols=152 Identities=21% Similarity=0.233 Sum_probs=98.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHh---cCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLA---GRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLR 179 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~---G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 179 (679)
++++++|+||||||||||+++|+ |...+ ..|++..++.+......+.+.+++|+..+++..|+.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 98764 3566666543321222334556678888888889999997643210
Q ss_pred CC-----CCCCHHHHHHHHHHHHHHcCCC--ccc-------cccccCccCcccCHHHHHHHHHHHHH-hhCCCeEEEe--
Q 005754 180 LP-----RTLSTKEKTSIAEAVMAELGLT--KCE-------NTIIGNSFIRGISGGERKRVSIAHEM-LINPSLLILD-- 242 (679)
Q Consensus 180 ~~-----~~~~~~~~~~~v~~~l~~lgL~--~~~-------~~~vg~~~~~~LSgGerqRv~IA~aL-~~~P~lllLD-- 242 (679)
.. ...+... ..++.+....... -.. -..+.++.+..||| |+ ++| +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 00 0111111 1122221111111 000 01122344557999 66 677 9999999999
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHhC
Q 005754 243 --EPTSGLDSTAAYRLVSTLGSLVQR 266 (679)
Q Consensus 243 --EPtsgLD~~~~~~i~~~L~~l~~~ 266 (679)
|||+|||..+...+.+.|+++.++
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999998765
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-15 Score=143.60 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=71.1
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccccc-CcEEEEecCCC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS-KRTGFVTQDDI 161 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~-~~i~yv~Q~~~ 161 (679)
+++++++++.+++++|+++++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.+...... ++ +++|+..
T Consensus 12 ~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~~--~~~q~~~ 85 (158)
T 1htw_A 12 FSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIAG--KMIYHFD 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEETT--EEEEEEE
T ss_pred HHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCCC--cceeccc
Confidence 4566778888999999999999999999999999999999999988 63 6888998877643221 22 7999988
Q ss_pred CCCCCCHHHHHHH
Q 005754 162 LYPHLTVRETLVF 174 (679)
Q Consensus 162 l~~~lTV~E~l~~ 174 (679)
++ .+||.|++.+
T Consensus 86 l~-~ltv~e~l~~ 97 (158)
T 1htw_A 86 LY-RLADPEELEF 97 (158)
T ss_dssp CT-TCSCTTHHHH
T ss_pred cc-cCCcHHHHHH
Confidence 88 8999999965
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-16 Score=171.70 Aligned_cols=172 Identities=15% Similarity=0.045 Sum_probs=99.0
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHhcCcCCCCC-eeeEEEECCCCccccccCcEEEEecCCCCCCCCCHH
Q 005754 93 ILNGITGMVSP--GEILAILGPSGSGKSTMLNVLAGRLHQGHG-LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVR 169 (679)
Q Consensus 93 iL~~vs~~i~~--Ge~~allGpnGsGKSTLL~~L~G~~~~~~~-~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 169 (679)
+.+.|++.|++ |+.++|+||||||||||+|+|+|+++++.+ ..|++.+++.... .+..++....
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~------------~~~~~~~~~~- 223 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGG------------DEQAMQYSDY- 223 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSS------------CTTSSCTTTH-
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCC------------CcccCChhHH-
Confidence 45789999999 999999999999999999999999876310 0044443211000 0000111112
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-hCCCeEEEeC---CC
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-INPSLLILDE---PT 245 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-~~P~lllLDE---Pt 245 (679)
+++.+... +.......+.+.+-+ .++...+.....+|+|++||..+++++. .+|++++||| |+
T Consensus 224 ~~I~~~~q----------~~~~~~~t~~~nl~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 224 PQMALGHQ----------RYIDYAVRHSHKIAF---IDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp HHHHHHHH----------HHHHHHHHHCSSEEE---ESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred HHHHHHHH----------HHHHHHHhccCCEEE---EeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 22332110 000000000000000 0000001112346778888888888775 5999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEe
Q 005754 246 ------SGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 246 ------sgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~ 292 (679)
.++|+..+..+.+.|+++.+ .|.+|++++|. . +..+++|++.+++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 58999999999999999865 48899999975 3 3456666555543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.8e-13 Score=144.20 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=68.4
Q ss_pred ccCcccCHHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhC
Q 005754 213 SFIRGISGGERKRV------SIAHEMLIN-PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMF 285 (679)
Q Consensus 213 ~~~~~LSgGerqRv------~IA~aL~~~-P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~ 285 (679)
..+..||||||||+ ++|++|+.+ |+++||||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 34568999999988 567888999 999999999999999999999999999753 468999999974 57899
Q ss_pred CeEEEEeC
Q 005754 286 DKVLVLSE 293 (679)
Q Consensus 286 D~v~lL~~ 293 (679)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999973
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-14 Score=150.07 Aligned_cols=139 Identities=22% Similarity=0.176 Sum_probs=95.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC-CCCCeeeEEEEC-CCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH-QGHGLTGTILTN-NNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~-~~~~~~G~i~~~-g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
+++++.. .+|++++|+||||||||||+|+|+|... + .+|+|..+ |.......++.+++++|+..++++.||+|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 4555554 4899999999999999999999999887 5 36788776 544333345679999999989999999984
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
. + ...+.++..+.+.++++.+|+.+..|.. +.++| ||+||++||+++ +++.
T Consensus 282 ~-------l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl---------------i~~~ 332 (358)
T 2rcn_A 282 G-------L-WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA---------------IAET 332 (358)
T ss_dssp C-------C-CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred h-------h-cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC---------------CCHH
Confidence 1 1 1245666667788899999998766544 45799 999999999764 3444
Q ss_pred HHHHHHHHHHHHHh
Q 005754 252 AAYRLVSTLGSLVQ 265 (679)
Q Consensus 252 ~~~~i~~~L~~l~~ 265 (679)
-.....++++++.+
T Consensus 333 R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 333 RFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHh
Confidence 45555666666643
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=138.07 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=85.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc--CcCCCC--CeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHH
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGH--GLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G--~~~~~~--~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
+-+++|++++|+||||||||||++.|++ ..++.. ...|.+++++... + ...+....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------~----~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------F----RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------C----CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------c----CHHHHHHH
Confidence 4589999999999999999999999999 343210 0235555554431 0 11111101
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH-HHHHHHHh--hCCCeEEEeCCCCCCCHH
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR-VSIAHEML--INPSLLILDEPTSGLDST 251 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~IA~aL~--~~P~lllLDEPtsgLD~~ 251 (679)
...+. ... +++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 79 ~~~~g----~~~-------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 79 AERYG----LSG-------SDVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred HHHcC----CCH-------HHHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 01110 011 111221111 11244444332 23333444 479999999999999985
Q ss_pred -------H-----HHHHHHHHHHHHhC-CcEEEEEeCCccHH------------------HHHhCCeEEEEeCC
Q 005754 252 -------A-----AYRLVSTLGSLVQR-GKTIVTSMHQPSSR------------------VYQMFDKVLVLSEG 294 (679)
Q Consensus 252 -------~-----~~~i~~~L~~l~~~-g~tii~~tH~~~~~------------------i~~~~D~v~lL~~G 294 (679)
. ...+++.|++++++ |.|||+++|..... +...+|.+++|++|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 34566677777654 99999999964321 12279999999865
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-17 Score=173.23 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=101.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCC-----CCeeeEEEECCCCccc-------------------cccCcEEEE---e
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQG-----HGLTGTILTNNNKPTK-------------------HISKRTGFV---T 157 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~-----~~~~G~i~~~g~~~~~-------------------~~~~~i~yv---~ 157 (679)
++++|+|+||||||||||.|.|..... ....|+|.++|.+... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999986210 0135666666644311 223456777 5
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRT---LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
|+..+++..+|.||..++........ .+......+++.++..+++.+..+.. ..+|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 77666667788877654210000000 00000000111223334444433322 2589999999999888999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCC
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D 286 (679)
+|+++ ||| ..+.+.|+++. .+.||++++|++.+ ...++|
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 99987 998 77888888875 58999999998653 334443
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-15 Score=145.99 Aligned_cols=138 Identities=19% Similarity=0.273 Sum_probs=90.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc-------cccc-CcEE----EEecCCCCCCCCCHHHHH
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT-------KHIS-KRTG----FVTQDDILYPHLTVRETL 172 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~-------~~~~-~~i~----yv~Q~~~l~~~lTV~E~l 172 (679)
++++|+|+||||||||++.|+|++++.+...|.|.++|.+.. ..++ +.+| +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998865445799999987621 1233 3466 788876654 110
Q ss_pred HHHhhhcCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE-------EEeCC
Q 005754 173 VFCSLLRLPRTLSTKEKTSIAEAVMAE-LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL-------ILDEP 244 (679)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll-------lLDEP 244 (679)
. .. +....++++++. +. ..|+.+++ +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 01 111234556665 43 46788876 59999999999999999999873 23555
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCC
Q 005754 245 TSG---LDSTAAYRLVSTLGSLVQRG 267 (679)
Q Consensus 245 tsg---LD~~~~~~i~~~L~~l~~~g 267 (679)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 34555677777776666654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-16 Score=164.97 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=114.7
Q ss_pred cCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------ccc
Q 005754 79 TDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HIS 150 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~ 150 (679)
+..+++++.|+.+.+|+++|+++++|++++|+||||||||||+|+|+|.+.++ .|+|.+.+.++.. ..+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHh
Confidence 45567777887788999999999999999999999999999999999988753 5677777655421 235
Q ss_pred CcEEEEecCCCCCCCCC------------HHHHHHHHh-----------------------------hhcCCCCCCHHHH
Q 005754 151 KRTGFVTQDDILYPHLT------------VRETLVFCS-----------------------------LLRLPRTLSTKEK 189 (679)
Q Consensus 151 ~~i~yv~Q~~~l~~~lT------------V~E~l~~~~-----------------------------~~~~~~~~~~~~~ 189 (679)
+++++++|++.+++..+ ++|.+.... .+..+. ...+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~ 184 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDEL 184 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C----
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccH
Confidence 67899999987765321 233321100 000000 00000
Q ss_pred H---HHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHH
Q 005754 190 T---SIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI------NPSLLILDEPTSGLDSTAAYRLVSTL 260 (679)
Q Consensus 190 ~---~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~------~P~lllLDEPtsgLD~~~~~~i~~~L 260 (679)
+ +.+.+....+.++ ..|. .....+|+|++|++..+++++. +|++++ ||++|.....++.+.|
T Consensus 185 ~~i~~~i~~~~~ivvlN-K~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 185 QGIKKGIFELADMIAVN-KADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp --CCTTHHHHCSEEEEE-CCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred HHHHHHHhccccEEEEE-chhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 0 0011111112221 1110 1124589999999999999887 688886 9999999999999999
Q ss_pred HHHHh
Q 005754 261 GSLVQ 265 (679)
Q Consensus 261 ~~l~~ 265 (679)
.++.+
T Consensus 256 ~~~~~ 260 (337)
T 2qm8_A 256 EDHRS 260 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-14 Score=160.02 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=104.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------c--ccCcEEEEecCCCCC
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------H--ISKRTGFVTQDDILY 163 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~--~~~~i~yv~Q~~~l~ 163 (679)
-+++|+++++|++++|+||||||||||+++|+|++++. .|+|.+++.+..+ . .+++++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999998753 5788887655321 1 245799999998888
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh-hCC-CeEEE
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-INP-SLLIL 241 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~-~~P-~lllL 241 (679)
+.+||++++.++..-.. . . -+++..|+.+... .+-.--+|++.+++++. ..| .++|.
T Consensus 360 p~~tV~e~l~~a~~~~~----D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNI----D------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHHHHTTC----S------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCC----C------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 88999999987643110 0 0 0122233322111 11122357888888664 457 45666
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCC
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQ 276 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~ 276 (679)
.++|+|.|.. +.++.+.+ .|.|.|+.||-
T Consensus 419 LDattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred ecCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 5688886543 34455543 48899999994
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-13 Score=145.33 Aligned_cols=142 Identities=11% Similarity=0.131 Sum_probs=97.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------ccc--CcEEEEecCCCCCCCCCHHHH
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HIS--KRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~--~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
++|++++|+||||||||||++.|+|.+++. .|+|.++|.+..+ .++ ..+.+++|+..+.|.+||+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999998764 5788887766421 112 246699999999999999999
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+.++...... . -+++..|+.+..+. ....|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d----------~--vliDtaG~~~~~~~-----l~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID----------V--VLIDTAGRSETNRN-----LMDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS----------E--EEEEECCSCCTTTC-----HHHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch----------h--hHHhhccchhHHHH-----HHHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 9875321100 0 01222344332221 122343 38888888878888885543
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEeCCc
Q 005754 252 AAYRLVSTLGSLVQ-RGKTIVTSMHQP 277 (679)
Q Consensus 252 ~~~~i~~~L~~l~~-~g~tii~~tH~~ 277 (679)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 466666777764 589999999964
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=141.76 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=69.1
Q ss_pred CcccCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE
Q 005754 215 IRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~----~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l 290 (679)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 3459999999999999999 57999999999999999999999999999876689999999994 46788999999
Q ss_pred Ee
Q 005754 291 LS 292 (679)
Q Consensus 291 L~ 292 (679)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=123.66 Aligned_cols=97 Identities=18% Similarity=0.340 Sum_probs=72.0
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.+|+++ +|+.++|+||||+|||||+++|++...+. | ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g--------------~~~~~~~~~~~~~~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----G--------------KNAAYIDAASMPLT------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----T--------------CCEEEEETTTSCCC-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----C--------------CcEEEEcHHHhhHH-------
Confidence 456676 89999999999999999999999987641 2 01233333221100
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+++.+|++|++|||++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 1245799999999998 6665
Q ss_pred HHHHHHHHHHHHHhCCcE-EEEEeCCcc
Q 005754 252 AAYRLVSTLGSLVQRGKT-IVTSMHQPS 278 (679)
Q Consensus 252 ~~~~i~~~L~~l~~~g~t-ii~~tH~~~ 278 (679)
.++.+.+++.++.++|++ +|+++|.+.
T Consensus 99 ~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 99 EQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 588999999998887888 899999654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-14 Score=153.02 Aligned_cols=170 Identities=12% Similarity=0.113 Sum_probs=97.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.. .....+++|.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTC-SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCcccc-eecceeeEEEecCc--ceEEEEeccc
Confidence 489999999999999999999999999999999742 11222111 12223455554430 0011111100
Q ss_pred HHhhhcCCCCCCHHHH--HHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 174 FCSLLRLPRTLSTKEK--TSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+............... .++++.++..+++. +.....||+||+||+.+|++|+.+|.++++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 0000000001111111 11122233333433 223456999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHH-HhCCcEEEEEeCCccHHHHHhCCeE
Q 005754 252 AAYRLVSTLGSL-VQRGKTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 252 ~~~~i~~~L~~l-~~~g~tii~~tH~~~~~i~~~~D~v 288 (679)
.+ ..++.+++. .+.|.+++.+|......+.++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 77 455555544 4457777766544344455555433
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.9e-14 Score=145.20 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=88.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh----
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL---- 177 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~---- 177 (679)
+++.+++|.||+|||||||.+.|++.+.+. | . . ++.+.+|+||+.+++. ++++|+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----C-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 468899999999999999999999987631 1 0 1 3446667999988865 88899887521
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccccCccCcccCHHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHH
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTK----CENTIIGNSFIRGISGGERKRVSIA--HEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~~~~LSgGerqRv~IA--~aL~~~P~lllLDEPtsgLD~~ 251 (679)
+.. ...+.....+...+.++.+.-.- .....+ ..+...+||||+||+.+| +++ +|+|+|+|||++++|+.
T Consensus 93 ~~~-~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQG-RGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSS-SCSTTSBCHHHHHHHHHHHTC------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhh-ccCcchhHHHHHHHHHHHhhccCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 110 01111112334556667664320 011111 134467999999999997 555 89999999999999986
Q ss_pred H
Q 005754 252 A 252 (679)
Q Consensus 252 ~ 252 (679)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-12 Score=123.66 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=43.1
Q ss_pred HhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 232 MLINPSLLILDEPTS-GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 232 L~~~P~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||.+..
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 355999999999995 999999999999999988889999999999754
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.7e-15 Score=160.18 Aligned_cols=149 Identities=18% Similarity=0.166 Sum_probs=101.3
Q ss_pred ccCCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc
Q 005754 78 STDDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI 149 (679)
Q Consensus 78 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~ 149 (679)
....++++..++...+|+++ +. ++|++++|+|||||||||||++|+|.++++ .|.|.+.+.+... ..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v 217 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQV 217 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEEC
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEE
Confidence 34556677777777899998 54 899999999999999999999999988763 5778777655421 22
Q ss_pred cCcEEEEe---------cCCCC--CCC----CCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCc
Q 005754 150 SKRTGFVT---------QDDIL--YPH----LTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNS 213 (679)
Q Consensus 150 ~~~i~yv~---------Q~~~l--~~~----lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 213 (679)
.+.+++.+ |++.. ++. .|+.+++.++..-... .........+.++ .|..+|+.+..
T Consensus 218 ~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~~------- 289 (418)
T 1p9r_A 218 NPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPFL------- 289 (418)
T ss_dssp BGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHHH-------
T ss_pred ccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHHH-------
Confidence 34556655 88755 343 6899998875421100 0000011112223 46778887532
Q ss_pred cCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 214 FIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 214 ~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
.+..|||||+|| ||++|+.+|++..-
T Consensus 290 ~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 290 ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 234799999999 99999999998763
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-11 Score=132.43 Aligned_cols=154 Identities=15% Similarity=0.231 Sum_probs=88.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHH--hcCcCCCCC--eeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHH
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVL--AGRLHQGHG--LTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVF 174 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L--~G~~~~~~~--~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 174 (679)
+-+++|++++|+||||||||||++.| .+..+++.+ ..+.+++++.... ........
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~--------------------~~~rl~~~ 232 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF--------------------RPVRLVSI 232 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------CHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc--------------------CHHHHHHH
Confidence 57899999999999999999999954 455543211 2345555554310 00000000
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH-HHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHH
Q 005754 175 CSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG-GERKRVSIAHEML--INPSLLILDEPTSGLDST 251 (679)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~IA~aL~--~~P~lllLDEPtsgLD~~ 251 (679)
...+. ... +++++.+- +. +..++ .+.+.+.-+.+++ .+|+++++|||++.+|+.
T Consensus 233 a~~~g----l~~-------~~vleni~--------~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 233 AQRFG----LDP-------DDALNNVA--------YA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp HHHTT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred HHHcC----CCh-------HhHhhcEE--------Ee----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 00110 000 01111111 11 11222 1233333333433 469999999999999975
Q ss_pred HH------------HHHHHHHHHHHhC-CcEEEEEeCCcc------------------HHHHHhCCeEEEEeCCe
Q 005754 252 AA------------YRLVSTLGSLVQR-GKTIVTSMHQPS------------------SRVYQMFDKVLVLSEGR 295 (679)
Q Consensus 252 ~~------------~~i~~~L~~l~~~-g~tii~~tH~~~------------------~~i~~~~D~v~lL~~G~ 295 (679)
.. .++++.|++++++ |.|||+++|... ..+...+|.++.|++++
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 43 6788889998865 999999999821 22466789999998763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=132.41 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=74.3
Q ss_pred EEEECCCCCcHHHHHHHHhc-CcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC
Q 005754 107 LAILGPSGSGKSTMLNVLAG-RLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT 183 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G-~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 183 (679)
+.|.||||+|||||+++|++ +..+ ..|.+.++|..... ..++.+++++|.+.+.-..+ + . ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~ 103 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP---GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GN 103 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT---TCCC------------------CCEECSSEEEECCC----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC---CCCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CC
Confidence 89999999999999999999 5554 25777777654321 22456788888764311100 0 0 00
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005754 184 LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263 (679)
Q Consensus 184 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l 263 (679)
.... .+++.++.+......+..+ .+|| +..+|+++++|||++ ||+.++..+.+.|++.
T Consensus 104 ~~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 104 NDRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CCHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred cchH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 0111 1233333332211111111 3566 788999999999999 9999999999999886
Q ss_pred HhCCcEEEEEeCCccH
Q 005754 264 VQRGKTIVTSMHQPSS 279 (679)
Q Consensus 264 ~~~g~tii~~tH~~~~ 279 (679)
. .+.++|+++|++..
T Consensus 162 ~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSP 176 (354)
T ss_dssp T-TTEEEEEEESCSCS
T ss_pred c-CCCEEEEEeCCHHH
Confidence 4 37899999999753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-13 Score=140.17 Aligned_cols=121 Identities=19% Similarity=0.200 Sum_probs=80.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCCCccc---ccc-CcEEEEecCCCCC-----CCCCH
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT---NNNKPTK---HIS-KRTGFVTQDDILY-----PHLTV 168 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~---~g~~~~~---~~~-~~i~yv~Q~~~l~-----~~lTV 168 (679)
+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|+..+. ..+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3468999999999999999999999 8775 3678887 7765432 122 3689999998553 78999
Q ss_pred HHHH--HHHh----hhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCccCcccCHHHHHHHHHHHH
Q 005754 169 RETL--VFCS----LLRLPRTLSTKEKTSIAEAVMAELGLTK-CENTIIGNSFIRGISGGERKRVSIAHE 231 (679)
Q Consensus 169 ~E~l--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~IA~a 231 (679)
|++ .|.. .++.....+..+...+++++++.++|.+ ..+ .+++.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~-----~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYK-----SYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHH-----HHHHHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH-----HHHHHHHHHHHHHHHHhcc
Confidence 887 4431 0111110112233456889999999985 444 3455799999999999873
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-13 Score=137.23 Aligned_cols=165 Identities=18% Similarity=0.154 Sum_probs=94.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRL 180 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 180 (679)
.++|++++|+||||||||||+++|+|++++. + ..+++|++++..++. +..+++........
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 4789999999999999999999999998753 1 124555555544321 12222110000001
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 005754 181 PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA-HEMLINPSLLILDEPTSGLDSTAAYRLVST 259 (679)
Q Consensus 181 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA-~aL~~~P~lllLDEPtsgLD~~~~~~i~~~ 259 (679)
+..... ....+.+..+...+..+.++.+. ...+|+||+||++++ ++++.++.++++|||..
T Consensus 80 ~~~~~~----~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------------- 141 (208)
T 3c8u_A 80 PETFDF----EGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------------- 141 (208)
T ss_dssp GGGBCH----HHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-------------
T ss_pred CchhhH----HHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-------------
Confidence 111111 12223333332222233334433 335799999999998 77888888888888741
Q ss_pred HHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHH
Q 005754 260 LGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFE 310 (679)
Q Consensus 260 L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 310 (679)
.++.+.--.++++.+.....+.+...|. +..|+ +.+++.+.+.
T Consensus 142 -~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 142 -RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp -GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred -HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 1122223467778887655566666662 34454 6667766553
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-14 Score=159.45 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=108.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-cccCcEEEEecCCCCC------
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-HISKRTGFVTQDDILY------ 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-~~~~~i~yv~Q~~~l~------ 163 (679)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+ .|.|.++|..... .....++++.|.....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45789999999999999999999999999999999999764 6788887754211 1133456666543322
Q ss_pred ----------------CCCCHHHHHHHHhhhcCCCC----CCHHHHHHHHHHHHHHcCCCc--ccccccc--C---ccCc
Q 005754 164 ----------------PHLTVRETLVFCSLLRLPRT----LSTKEKTSIAEAVMAELGLTK--CENTIIG--N---SFIR 216 (679)
Q Consensus 164 ----------------~~lTV~E~l~~~~~~~~~~~----~~~~~~~~~v~~~l~~lgL~~--~~~~~vg--~---~~~~ 216 (679)
..++..|++.+......... ... ..++++++++.... .....+. + ....
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha----~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~ 399 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHA----GDINQMVYRLESEPLKVPRSMLQFLDIALVQTM 399 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEEC----SSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEE
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccccc----CCHHHHHHHHHhcccccHHHHHhhccEEEEEEE
Confidence 23444444433222111100 000 01223333333211 0000000 0 1234
Q ss_pred ccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EeCCccHHHHHhCC
Q 005754 217 GISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVT--SMHQPSSRVYQMFD 286 (679)
Q Consensus 217 ~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~--~tH~~~~~i~~~~D 286 (679)
.+|+|||||+.++. + | |+|||+.....+.+.|.++.++|.|+++ ++|+.. ++...++
T Consensus 400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 58999999987751 2 7 9999999888888888877777889885 899864 4655553
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-13 Score=144.80 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=110.1
Q ss_pred CCCCccccccccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHhcCcCCC-CCeeeEEEECCCCccc---c
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPG-------EILAILGPSGSGKSTMLNVLAGRLHQG-HGLTGTILTNNNKPTK---H 148 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~G-------e~~allGpnGsGKSTLL~~L~G~~~~~-~~~~G~i~~~g~~~~~---~ 148 (679)
..+++...++.+.+++++++.+++| +.++|.||||+|||||+++|+|..... ...+|.+..++.+... .
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 3445666777788999999999887 899999999999999999999976311 0124444333322211 1
Q ss_pred -ccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCC-CCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHH
Q 005754 149 -ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRT-LSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV 226 (679)
Q Consensus 149 -~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv 226 (679)
.++.+.++.|.+.+.+ ++.|++........... .......+.++..+..+++.. +++. +..||+|+|||+
T Consensus 100 ~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~ 171 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRF 171 (334)
T ss_dssp CCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTC
T ss_pred ccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhc
Confidence 2457999999887765 78888854332211000 011122233444455555533 3333 347999999998
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCe
Q 005754 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDK 287 (679)
Q Consensus 227 ~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~ 287 (679)
.++ .+||+.+..++.++|++.++. + ++|++. .+..++++
T Consensus 172 ~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 172 GII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp SEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred Cce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 655 788999999999999988753 4 256643 34555543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.5e-14 Score=152.70 Aligned_cols=171 Identities=17% Similarity=0.134 Sum_probs=118.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcC----C-----CCCeeeEEEECCCCccc-----cccCc---EEEEecCCCC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLH----Q-----GHGLTGTILTNNNKPTK-----HISKR---TGFVTQDDIL 162 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~----~-----~~~~~G~i~~~g~~~~~-----~~~~~---i~yv~Q~~~l 162 (679)
.+++|+.++|+|+||+|||||+|+|+|... + -.+..|.+.++|..... ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 1 12367999988743211 11222 3477788888
Q ss_pred CCCCCHHHHH--HHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCC--Ce
Q 005754 163 YPHLTVRETL--VFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP--SL 238 (679)
Q Consensus 163 ~~~lTV~E~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P--~l 238 (679)
.+..+..|++ .|...++. ++.++..++..+ +..+..+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 8887776655 33332221 111122222211 22233356543 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCCccHHHHHhCCeEE-EEeCC-eEEEecChhh
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSL-VQRGKTIVTSMHQPSSRVYQMFDKVL-VLSEG-RCLYFGKGSE 304 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tii~~tH~~~~~i~~~~D~v~-lL~~G-~iv~~G~~~~ 304 (679)
+++|||+.++|+......++.++++ ++.|.||+ +|+. .++.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 76777864 9985 46889999999 99999 9988876544
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-13 Score=143.58 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=96.0
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCC-CC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDD-IL 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~-~l 162 (679)
++...+++++++.+++| ++|.||||||||||+++|+|...+ +.+.++|.+... ...+.+++++|.. ..
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNS 102 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc
Confidence 34567899999999999 999999999999999999998653 578888866432 2234577788764 45
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
.|.+++.|++......+ .. ...+ .+.+.. +.....|||||+||+.|++++..+|++| |
T Consensus 103 ~p~i~~~Deid~~~~~r-------~~--~~~~------~~~~~~-----~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D 160 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRR-------SD--RETG------ASVRVV-----NQLLTEMDGLEARQQVFIMAATNRPDII--D 160 (274)
T ss_dssp CSEEEEEETCTTTCC------------------------CTTHH-----HHHHHHHHTCCSTTCEEEEEEESCGGGS--C
T ss_pred CCCeEeeehhhhhhccc-------CC--Ccch------HHHHHH-----HHHHHhhhcccccCCEEEEeecCChhhC--C
Confidence 56666666664321100 00 0000 011212 2334569999999999999999999986 8
Q ss_pred CCCC------------CCCHHHHHHHHHH
Q 005754 243 EPTS------------GLDSTAAYRLVST 259 (679)
Q Consensus 243 EPts------------gLD~~~~~~i~~~ 259 (679)
|++. -.|...+.++++.
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 8864 2355555555544
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-10 Score=117.81 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=45.7
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCcEEEEEeCCccHH-------HHHhCCeEEEEeC
Q 005754 234 INPSLLILDEPTSGL--DSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSR-------VYQMFDKVLVLSE 293 (679)
Q Consensus 234 ~~P~lllLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tii~~tH~~~~~-------i~~~~D~v~lL~~ 293 (679)
.+|+++++|||++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6655566666666665 5699999999986531 4578899999974
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-14 Score=137.66 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=43.4
Q ss_pred HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 228 IAH-EMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 228 IA~-aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
.++ +++.+|++++|||+|+++|..+.+.|.+.|.++.+. +...|.+ ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 445 677888888899999999999999999999887653 2334632 46899888753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.1e-11 Score=125.30 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=67.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCCCccc--c-ccCcEEEEecCCCCCC----CCCH
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT---NNNKPTK--H-ISKRTGFVTQDDILYP----HLTV 168 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~---~g~~~~~--~-~~~~i~yv~Q~~~l~~----~lTV 168 (679)
+++.+|++++|+||||+|||||+|+|+|...+ .+|+|.+ +|+..+. . .+..+||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 55678999999999999999999999998875 3678876 5654322 1 1222799999987765 6899
Q ss_pred HHHHH--HHhh------hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH
Q 005754 169 RETLV--FCSL------LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225 (679)
Q Consensus 169 ~E~l~--~~~~------~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 225 (679)
|++. |... ++...-....+...+++++++.++|.+.+.... ..++.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 3211 111110111223356888999999976432222 2477777763
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-10 Score=122.51 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=68.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE---CCCCccc---cc-cCcEEEEecCCC-----------
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT---NNNKPTK---HI-SKRTGFVTQDDI----------- 161 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~---~g~~~~~---~~-~~~i~yv~Q~~~----------- 161 (679)
++.+|++++|+||||||||||||+|+|+..|+ +|+|.+ +|..... .. .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34579999999999999999999999998863 788888 7765432 11 236899999974
Q ss_pred -----CCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCccCcccCH
Q 005754 162 -----LYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT-KCENTIIGNSFIRGISG 220 (679)
Q Consensus 162 -----l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 220 (679)
++|.+|+ ||+.|.. .. ...+...+++++|+.+||. +..+ ++++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~-----~~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYE-----NYVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHH-----HHHHHHHH
Confidence 5888999 9887752 11 1122345688999999996 4333 33445664
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-11 Score=127.88 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=74.5
Q ss_pred cCCCCccccccccceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHhcCcC--CCCCeeeE
Q 005754 79 TDDQGSTAKIQERTILNGITGMV-------------------SPGEILAILGPSGSGKSTMLNVLAGRLH--QGHGLTGT 137 (679)
Q Consensus 79 ~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~allGpnGsGKSTLL~~L~G~~~--~~~~~~G~ 137 (679)
+..+++++.| .++++++++.+ ++|++++|+||||||||||+++|+|++. |+ +|+
T Consensus 38 i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~ 112 (308)
T 1sq5_A 38 LSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRR 112 (308)
T ss_dssp CCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCC
T ss_pred cchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCe
Confidence 4556667777 36899999988 8999999999999999999999999876 53 677
Q ss_pred EEE---CCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005754 138 ILT---NNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 138 i~~---~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~ 178 (679)
|.+ +|.......++.++++ |+..+++.+|+.+++.+...+
T Consensus 113 i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 113 VELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp EEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred EEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 877 7765433334567888 877788889999999876554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6e-09 Score=115.64 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=110.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeee-EEEECCCCcc-ccccCc-EEEEecCCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTG-TILTNNNKPT-KHISKR-TGFVTQDDILYPHLT 167 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G-~i~~~g~~~~-~~~~~~-i~yv~Q~~~l~~~lT 167 (679)
-..|+++.+-+++|+++.|.|+||+|||||+..+++...+. .| .+.+.+.+.. ..+.++ .+...+ ..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~ 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TNENVAIFSLEMSAQQLVMRMLCAEGN-------IN 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SSCCEEEEESSSCHHHHHHHHHHHHHT-------CC
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEEECCCCHHHHHHHHHHHHcC-------CC
Confidence 34688888889999999999999999999999999865421 11 2222211111 111100 000000 00
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh--hCCCeEEEeCCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML--INPSLLILDEPT 245 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~--~~P~lllLDEPt 245 (679)
. +. ++. ...+..+ .+++.+.++.++..+.. +-+ ..++|.+|.+ +.++.++ .+|+++++|+++
T Consensus 260 ~-~~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 260 A-QN------LRT-GKLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp H-HH------HHT-SCCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGG
T ss_pred H-HH------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHH
Confidence 0 00 111 1123322 34455566665443321 211 3468999987 5667776 689999999999
Q ss_pred CCCCH--------HHHHHHHHHHHHHHhC-CcEEEEEeC---------C--cc-------HHHHHhCCeEEEEeCCeE
Q 005754 246 SGLDS--------TAAYRLVSTLGSLVQR-GKTIVTSMH---------Q--PS-------SRVYQMFDKVLVLSEGRC 296 (679)
Q Consensus 246 sgLD~--------~~~~~i~~~L~~l~~~-g~tii~~tH---------~--~~-------~~i~~~~D~v~lL~~G~i 296 (679)
...++ .....+.+.|+.++++ |.+||+++| + |. ..+.+.+|.|++|.+++.
T Consensus 324 ~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 324 LIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp GSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 87742 3446778888888865 999999999 2 32 136788999999987664
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.86 E-value=7.6e-10 Score=116.50 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=77.5
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHh
Q 005754 97 ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCS 176 (679)
Q Consensus 97 vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 176 (679)
+++..++|++++|+|||||||||+++.|++.+.+. .|+|.+.+.+.. + ....|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~----r--------------~~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF----R--------------AAAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT----C--------------HHHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc----c--------------HHHHH------
Confidence 45556889999999999999999999999988642 244544332210 0 00011
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 177 LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV---SIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
....+.+.+|+.. + ...|||+.+++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1223445556642 1 24689999999 89999999999999999974 3455
Q ss_pred HHHHHHHHHHH
Q 005754 254 YRLVSTLGSLV 264 (679)
Q Consensus 254 ~~i~~~L~~l~ 264 (679)
..+++.|+++.
T Consensus 202 ~~l~~eL~~l~ 212 (306)
T 1vma_A 202 KNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.2e-09 Score=109.65 Aligned_cols=141 Identities=14% Similarity=0.186 Sum_probs=88.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLP 181 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 181 (679)
++|++++++||||+||||+++.|++.+.+.. | +++.++.+|.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G--------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H--------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C--------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C--------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 5799999999999999999999999876421 2 24677777652 245666554322
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 005754 182 RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261 (679)
Q Consensus 182 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~ 261 (679)
+..|+... . ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----~------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----V------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----B------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----e------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11233211 0 0122 33355555 45999999999 99999876654444433
Q ss_pred HHH---hCCcEEEE-EeCCccHHHHHhCCeEEEEeCCeEEEe
Q 005754 262 SLV---QRGKTIVT-SMHQPSSRVYQMFDKVLVLSEGRCLYF 299 (679)
Q Consensus 262 ~l~---~~g~tii~-~tH~~~~~i~~~~D~v~lL~~G~iv~~ 299 (679)
-+. ..+.++++ ++|.. .++.+.++++..+..+.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 332 12334555 48874 457788887766666777654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=5.3e-09 Score=112.08 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=87.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLL 178 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~ 178 (679)
+-+++|+++.|.||||+|||||+..++......+ ..+.|+.-+...- +. .
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g------------------~~vlyi~~E~~~~------~~--~---- 105 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG------------------GIAAFIDAEHALD------PE--Y---- 105 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------------------CCEEEEESSCCCC------HH--H----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC------------------CeEEEEECCCCcC------HH--H----
Confidence 3688999999999999999999888876432110 1234443332110 00 0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhC--CCeEEEeCCCCCC--------
Q 005754 179 RLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN--PSLLILDEPTSGL-------- 248 (679)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~--P~lllLDEPtsgL-------- 248 (679)
.+.+|+.. .+-.+-+ ..+. .+-+.++++++.+ |+++++|||++.+
T Consensus 106 ------------------a~~lG~~~-~~l~i~~----~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~ 160 (349)
T 2zr9_A 106 ------------------AKKLGVDT-DSLLVSQ----PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGE 160 (349)
T ss_dssp ------------------HHHTTCCG-GGCEEEC----CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC
T ss_pred ------------------HHHcCCCH-HHeEEec----CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccc
Confidence 11122211 0001111 1233 2345678888765 9999999999998
Q ss_pred --CH---HHHHHHHHHHHHH----HhCCcEEEEEeCCccH---------------HHHHhCCeEEEEeCCeEEEecC
Q 005754 249 --DS---TAAYRLVSTLGSL----VQRGKTIVTSMHQPSS---------------RVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 249 --D~---~~~~~i~~~L~~l----~~~g~tii~~tH~~~~---------------~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
|+ ..++.+.+.+++| .+.|.|||+++|.... .+..++|.++.+.+++++..|+
T Consensus 161 ~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 161 MGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223445555555 3459999999996431 2567899999998877665554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-09 Score=109.70 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=84.0
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILY 163 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~ 163 (679)
+.+.++... ++++++ +|++++++|+||+||||++..|++.+.+. .|++.+.+.+.....
T Consensus 82 l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~-------------- 140 (295)
T 1ls1_A 82 LKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPA-------------- 140 (295)
T ss_dssp HHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHH--------------
T ss_pred HHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHh--------------
Confidence 334444432 778888 99999999999999999999999987642 355666554331100
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
++ +.+ ..+.+..|+..... + .+-+-.+.+|.+|+.+...+++++|+||
T Consensus 141 ---~~-~ql---------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDt 188 (295)
T 1ls1_A 141 ---AR-EQL---------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDT 188 (295)
T ss_dssp ---HH-HHH---------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred ---HH-HHH---------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 00 100 01223345543210 0 0123445678899988889999999999
Q ss_pred C-CCCCCHHHHHHHHHHHHHH
Q 005754 244 P-TSGLDSTAAYRLVSTLGSL 263 (679)
Q Consensus 244 P-tsgLD~~~~~~i~~~L~~l 263 (679)
| +.++|.....++.+..+.+
T Consensus 189 pp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 189 AGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp CCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHhhhc
Confidence 9 9999998888887776654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.79 E-value=9.7e-13 Score=136.38 Aligned_cols=130 Identities=12% Similarity=0.183 Sum_probs=85.5
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~ 159 (679)
+.+.++...+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ...+.+++++|.
T Consensus 55 l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 55 IVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp HHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 344455667899999999999 89999999999999999999764 4677777654321 123346677776
Q ss_pred CC-CCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 160 DI-LYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 160 ~~-l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
.. ..+.+++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|+
T Consensus 128 ~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPD 189 (278)
T ss_dssp HHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTT
T ss_pred HHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCch
Confidence 43 556677878775322111000 001112222233322 2489999999999999999987
Q ss_pred e
Q 005754 238 L 238 (679)
Q Consensus 238 l 238 (679)
+
T Consensus 190 ~ 190 (278)
T 1iy2_A 190 I 190 (278)
T ss_dssp S
T ss_pred h
Confidence 6
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-10 Score=111.56 Aligned_cols=67 Identities=15% Similarity=0.292 Sum_probs=44.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc----cccccCcEEEEecCCCCCCCCCHHHH
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP----TKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~----~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++... ....++.++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56788999999999999999999999999863 123333221 12235568899998666555554443
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-12 Score=133.08 Aligned_cols=130 Identities=12% Similarity=0.182 Sum_probs=84.5
Q ss_pred ccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecC
Q 005754 84 STAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQD 159 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~ 159 (679)
+.+.++...+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ...+.+++++|.
T Consensus 31 l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 31 IVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp HHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 334455667899999999999 99999999999999999999764 4667777644321 122346677776
Q ss_pred C-CCCCCCCHHHHHHHHhhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 160 D-ILYPHLTVRETLVFCSLLRLPR-TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 160 ~-~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
. ...+.+++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|+
T Consensus 104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~ 165 (254)
T 1ixz_A 104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPD 165 (254)
T ss_dssp HTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGG
T ss_pred HHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCch
Confidence 4 3456677777774322111000 001122222333332 2489999999999999999998
Q ss_pred e
Q 005754 238 L 238 (679)
Q Consensus 238 l 238 (679)
+
T Consensus 166 ~ 166 (254)
T 1ixz_A 166 I 166 (254)
T ss_dssp G
T ss_pred h
Confidence 6
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.7e-10 Score=125.48 Aligned_cols=165 Identities=17% Similarity=0.155 Sum_probs=94.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhc--CcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCC--CHHHH
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL--TVRET 171 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G--~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~l--TV~E~ 171 (679)
.+++++.++..++|.|++||||||+|+.|.. +.....+.---+.+|.+.. .+. ....+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~--el~--------~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML--ELS--------VYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS--GGG--------GGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh--hhh--------hhccCCcccceeecC
Confidence 4788889999999999999999999999875 2222111112233343221 111 00011111 11111
Q ss_pred HHHHh-hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHH----------HHHHHHhhCCC-eE
Q 005754 172 LVFCS-LLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV----------SIAHEMLINPS-LL 239 (679)
Q Consensus 172 l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv----------~IA~aL~~~P~-ll 239 (679)
...+. .++ ....+.++| .++++..|+.+..+.. ......+|+||+||. .+++++...|. ++
T Consensus 229 ~~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 229 MKDAANALR----WCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 11111 111 012344444 4678888887643210 011225788887752 34556677887 88
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC----CcEEEEEeCCcc
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQR----GKTIVTSMHQPS 278 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~----g~tii~~tH~~~ 278 (679)
++||+++-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 34566666666543 789999999987
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-10 Score=133.23 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=102.9
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCC--
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDD-- 160 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~-- 160 (679)
.+..-++...+++++++.+++|+.++|+||||+|||||+++|++...+. ..|.+.+++.+.. .....++++++..
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~-~~~p~i~~~p~g~~~ 115 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPED-ENMPRIKTVPACQGR 115 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTC-TTSCEEEEEETTHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccc-ccCCcEEEEecchHH
Confidence 3344567788999999999999999999999999999999999988753 2477777766543 2345688888742
Q ss_pred --------------------CCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCH
Q 005754 161 --------------------ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG 220 (679)
Q Consensus 161 --------------------~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 220 (679)
..+..+++.+|+........+...-. +... ..-+.+|.-+... ....++|+
T Consensus 116 ~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~---~~~~L~G~~~~~~-----~~~g~~~~ 186 (604)
T 3k1j_A 116 RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGA---HAGALLGDVRHDP-----FQSGGLGT 186 (604)
T ss_dssp HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTTC---CHHHHHCEECCCC-----C----CCC
T ss_pred HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCCC---CHHhcCceEEech-----hhcCCccc
Confidence 11111222222110000000000000 0000 0111122111111 11246999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 005754 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262 (679)
Q Consensus 221 GerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~ 262 (679)
|++|++..++....++.+||+||... |++.....+.+.|.+
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999999999988 899988888888864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-09 Score=117.62 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=46.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCc
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKP 145 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~ 145 (679)
...+|+|+|+++++ |+++|+|||||||||||++|+|+++|+ +|+|.++|.+.
T Consensus 16 ~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~ 67 (483)
T 3euj_A 16 NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTE 67 (483)
T ss_dssp EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTS
T ss_pred ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEc
Confidence 35689999999999 999999999999999999999999874 67888888764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-09 Score=101.93 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l 263 (679)
+.+.+|++|+.+|+++++| ||++|..+..++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988753
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-09 Score=110.19 Aligned_cols=39 Identities=31% Similarity=0.343 Sum_probs=22.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cCcC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLA-GRLH 129 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~-G~~~ 129 (679)
.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999 9875
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.3e-08 Score=103.27 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 93 ILNGIT--GMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 93 iL~~vs--~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-|+.+- +-+++|+++.|.||||+|||||+..+++...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344443 3689999999999999999999999998654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-10 Score=126.47 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=81.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCC-CCCCCCHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDI-LYPHLTVR 169 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~-l~~~lTV~ 169 (679)
..+|+++++.+++|++++|.||||||||||+++|+|.. .|.+.....+ .......+++++|... ++++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~~~~~-~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALNVNLP-LDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSC-TTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEEEecc-chhHHHHHHHhcchhHHHHHHHHHH
Confidence 46899999999999999999999999999999999854 3455441111 1111223566666543 23333322
Q ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc----ccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---LGLTK-CE---NTI----IGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 170 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~----vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
..+ ..+.... ........+.+.++. +.+.. .. +.. .-+.....+++|+++|+..+.+++..|++
T Consensus 229 ~~~----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 111 0000000 110011222333321 11110 00 000 00123456899999999988888889998
Q ss_pred EE-EeCCCC
Q 005754 239 LI-LDEPTS 246 (679)
Q Consensus 239 ll-LDEPts 246 (679)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 77 999987
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-07 Score=104.99 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEeCCcc
Q 005754 220 GGERKRVSIAHEMLINPSLLILDEP----------TSGLDSTAAYRLVSTLGSLV----QRGKTIVTSMHQPS 278 (679)
Q Consensus 220 gGerqRv~IA~aL~~~P~lllLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tii~~tH~~~ 278 (679)
|++++|..++++....|.+||+||+ +.|.|......+.++|..+- +.+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5678888899999999999999999 44777777777777777663 34789999999974
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-08 Score=102.13 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=40.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc------------ccccCcEEEEecC
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT------------KHISKRTGFVTQD 159 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~------------~~~~~~i~yv~Q~ 159 (679)
++++++ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.+.. ...++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 466666 899999999999999999999998874 467777765431 1235679999984
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-07 Score=106.49 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=59.5
Q ss_pred CcccCHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-eCCccHHHHHhCCeEE
Q 005754 215 IRGISGGERKRVSIAHEMLINPSLLILDEPTS-GLDSTAAYRLVSTLGSLVQRGKTIVTS-MHQPSSRVYQMFDKVL 289 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL~~~P~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~~-tH~~~~~i~~~~D~v~ 289 (679)
+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|++| ||++ ..+.+++++.-
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~ 263 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAP 263 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCC
Confidence 44589999999999999999999999999996 999888777777776655456788885 8975 45777787543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-08 Score=99.05 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=37.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc---ccCcEEEEecCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH---ISKRTGFVTQDD 160 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~---~~~~i~yv~Q~~ 160 (679)
..+..+-....++|++++|+||||||||||+++|++.+ |.+.+++...... .+...++++|+.
T Consensus 16 ~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 16 ENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred hhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 33444444667899999999999999999999999865 5567776553221 122356666653
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.33 E-value=7e-07 Score=96.15 Aligned_cols=152 Identities=22% Similarity=0.229 Sum_probs=86.9
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHhcCcCCCC--------CeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH---
Q 005754 103 PGEI-LAILGPSGSGKSTMLNVLAGRLHQGH--------GLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE--- 170 (679)
Q Consensus 103 ~Ge~-~allGpnGsGKSTLL~~L~G~~~~~~--------~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E--- 170 (679)
+|-. ++|+|++|||||||+|.|+|...... ...|.+.++|.+. .+....|++.+.+ ...|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v--~l~DT~G~i~~lp----~~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI--MLVDTVGFIRGIP----PQIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE--EEEECCCBCSSCC----GGGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE--EEEeCCCchhcCC----HHHHHHHHH
Confidence 3444 99999999999999999999754211 2467888877432 1222344444321 111221
Q ss_pred HHHHHhh----hc-CCCCCCH---HHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHH----HHH-hhCCC
Q 005754 171 TLVFCSL----LR-LPRTLST---KEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA----HEM-LINPS 237 (679)
Q Consensus 171 ~l~~~~~----~~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA----~aL-~~~P~ 237 (679)
.+..... +. ....... .+..+.+.++++.+++.+..--.++| +...+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 1111100 00 0001111 23334567788888876543223343 2445788888988887 444 33344
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQ 265 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~ 265 (679)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.5e-07 Score=89.06 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005754 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264 (679)
Q Consensus 226 v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~ 264 (679)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.5e-07 Score=87.93 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=27.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
++++|++++|+||||||||||+++|++...|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998854
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-06 Score=93.23 Aligned_cols=129 Identities=11% Similarity=0.135 Sum_probs=84.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g--------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD--------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT--------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC--------CeEEEEeC------CCCHHHH
Confidence 456777777999999999999999999999888764321 11 12344332 1333332
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
. .+.......+++.+..+ ..||.+|++|+..|...+.++++++.|+|...
T Consensus 90 ~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s---- 139 (338)
T 4a1f_A 90 A------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR---- 139 (338)
T ss_dssp H------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC----
T ss_pred H------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc----
Confidence 2 22222222222222111 24999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHh-C-CcEEEEEeC
Q 005754 252 AAYRLVSTLGSLVQ-R-GKTIVTSMH 275 (679)
Q Consensus 252 ~~~~i~~~L~~l~~-~-g~tii~~tH 275 (679)
..++...++++.+ . |..+|++-|
T Consensus 140 -i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 140 -IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3467777777765 3 678888865
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.1e-08 Score=97.20 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=39.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEE--EECCCC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTI--LTNNNK 144 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i--~~~g~~ 144 (679)
+.....+..++..++|++++|+||||||||||+++|++++.. .|.+ .++|..
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~ 63 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDN 63 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCch
Confidence 344555666777789999999999999999999999998752 2444 666543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-07 Score=96.14 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=36.7
Q ss_pred CCCc-cccc-cccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 81 DQGS-TAKI-QERTILNGITGMVSP---GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 81 ~~~~-~~~~-~~~~iL~~vs~~i~~---Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++ ++.| +.+.+|+|+|+++++ |+.++|+|++||||||+.++|++.+.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 20 TGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3444 4555 557799999999999 99999999999999999999998653
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.11 E-value=5.1e-06 Score=88.98 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=48.1
Q ss_pred cccCHHHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe--CCcc
Q 005754 216 RGISGGERKRVSIAHEMLINPSLLILD-EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSM--HQPS 278 (679)
Q Consensus 216 ~~LSgGerqRv~IA~aL~~~P~lllLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~t--H~~~ 278 (679)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 458999998876 55555677789999 99999999998888888877654 67777777 7753
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.09 E-value=8.1e-09 Score=115.52 Aligned_cols=132 Identities=14% Similarity=0.210 Sum_probs=83.6
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcccc----ccCcEEEEecCCC-C
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH----ISKRTGFVTQDDI-L 162 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~----~~~~i~yv~Q~~~-l 162 (679)
+....+++++++.+++| ++|.||||+|||||+++|++... .+.+.+++.+.... ..+++..++|... .
T Consensus 50 l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~ 122 (499)
T 2dhr_A 50 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRH 122 (499)
T ss_dssp HHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSS
T ss_pred hhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 44556788999999999 89999999999999999999764 45677776543221 1223455666542 3
Q ss_pred CCCCCHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 163 YPHLTVRETLVFCSLLRLP-RTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
.|.+.+.|++......+.. ......+..+.+.+++. .|||||+|+..|+++...+|++ |
T Consensus 123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--L 182 (499)
T 2dhr_A 123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--L 182 (499)
T ss_dssp SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--S
T ss_pred CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--c
Confidence 4445555555321111100 00112333344444443 3788888888888899999987 7
Q ss_pred eCCCC
Q 005754 242 DEPTS 246 (679)
Q Consensus 242 DEPts 246 (679)
||+..
T Consensus 183 D~aLl 187 (499)
T 2dhr_A 183 DPALL 187 (499)
T ss_dssp CTTTS
T ss_pred Ccccc
Confidence 88875
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.09 E-value=9e-06 Score=86.95 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=36.3
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEeCCcc
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ---RGKTIVTSMHQPS 278 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tii~~tH~~~ 278 (679)
.+|.++++||+... |+.....+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45789999999876 88888888888877665 5889999999863
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=4.6e-07 Score=88.85 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=46.4
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHH-HHHhCCeEEEEeCCeE
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSR-VYQMFDKVLVLSEGRC 296 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~-i~~~~D~v~lL~~G~i 296 (679)
.+.|+.+|..++..+..+|+.+..+ .+.++|.....+.+.+++. .+.++|+.+|...+. ....||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~---- 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD---- 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE----
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE----
Confidence 3678889999998888887654332 3345666555555544432 356888888875431 256788888874
Q ss_pred EEecChhhHHHHH
Q 005754 297 LYFGKGSEAMSYF 309 (679)
Q Consensus 297 v~~G~~~~~~~~f 309 (679)
.+++...+..
T Consensus 132 ---~~~e~~~~Rl 141 (206)
T 1jjv_A 132 ---VSPQTQLARS 141 (206)
T ss_dssp ---CCHHHHHHHH
T ss_pred ---CCHHHHHHHH
Confidence 3555544443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-06 Score=83.94 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|++++|+||||||||||++.|++..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999765
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-06 Score=84.61 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=24.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
...+++|||+++++|++++|+||+||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-06 Score=81.83 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=32.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 95 NGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 95 ~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+++++.+.+| +++|+||||||||||+++|.+.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6889999999 9999999999999999999997654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.9e-07 Score=92.88 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=44.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh---cCcCCCCCeeeEEE--------ECCCCcc-----ccccCcEEE
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLA---GRLHQGHGLTGTIL--------TNNNKPT-----KHISKRTGF 155 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~---G~~~~~~~~~G~i~--------~~g~~~~-----~~~~~~i~y 155 (679)
.++++.+ ++|++++|+|||||||||++++|+ |...+ .+|.+. .+|.+.. ..+++.+++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 91 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDV 91 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCE
Confidence 3444543 789999999999999999999999 87654 367776 6665442 235567889
Q ss_pred EecCC
Q 005754 156 VTQDD 160 (679)
Q Consensus 156 v~Q~~ 160 (679)
++|.+
T Consensus 92 ~~~~~ 96 (252)
T 4e22_A 92 RFVSQ 96 (252)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 98754
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-06 Score=92.81 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=53.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cc-----cCcEEEE-ecC
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HI-----SKRTGFV-TQD 159 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~-----~~~i~yv-~Q~ 159 (679)
++++++.+++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+..+ .+ +..+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 47899999999999999999999999999999987653 3566665544321 12 4568888 665
Q ss_pred CCCCCCCCHHHHH
Q 005754 160 DILYPHLTVRETL 172 (679)
Q Consensus 160 ~~l~~~lTV~E~l 172 (679)
....|..++.+++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4444333333433
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.7e-05 Score=83.31 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=41.0
Q ss_pred cCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeC
Q 005754 218 ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG-KTIVTSMH 275 (679)
Q Consensus 218 LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~tH 275 (679)
-++.++++..+++..+.+|+++++.-..+..|..+ ...++.++.+...| .+|++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445443 45566777776555 57777766
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2e-06 Score=94.93 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=60.6
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE-EeCCeEEEecChhh--HHHH-
Q 005754 234 INPSLLILDEPTSGLDS-TAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV-LSEGRCLYFGKGSE--AMSY- 308 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l-L~~G~iv~~G~~~~--~~~~- 308 (679)
.+|++|++||+..-.+. .+...+...+.++.+.|+.||+++|.+..++..+.+++.- +..|.++..++++. ..+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999877664 6788899999998888999999999864332222222222 34566666666542 2222
Q ss_pred ---HHHcCCCCCCCCChHHHHHHHh
Q 005754 309 ---FESVGFSPSFPMNPADFLLDLA 330 (679)
Q Consensus 309 ---f~~~g~~~~~~~n~ad~~~~~~ 330 (679)
.+..|...+ ....+++.+..
T Consensus 273 ~~~~~~~~~~i~--~e~l~~la~~~ 295 (440)
T 2z4s_A 273 RKMLEIEHGELP--EEVLNFVAENV 295 (440)
T ss_dssp HHHHHHHTCCCC--TTHHHHHHHHC
T ss_pred HHHHHHcCCCCC--HHHHHHHHHhc
Confidence 333455444 24456665544
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.7e-05 Score=77.54 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCcEEEEEeCCcc---HHH
Q 005754 219 SGGERKRVSIAHEMLINPSLLILDEPTSGLDST----------AAYRLVSTLGSLVQ----RGKTIVTSMHQPS---SRV 281 (679)
Q Consensus 219 SgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~tii~~tH~~~---~~i 281 (679)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777777778899999999998766532 22334444444322 2467788888753 345
Q ss_pred HHhCCeEEEE
Q 005754 282 YQMFDKVLVL 291 (679)
Q Consensus 282 ~~~~D~v~lL 291 (679)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5567765544
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.85 E-value=9.8e-06 Score=84.79 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=43.5
Q ss_pred cCHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-C--cEEEEEeCCccHHHHHhCCeE
Q 005754 218 ISGGERKRVSIAHEML--INPSLLILDEPTSGLDSTA-AYRLVSTLGSLVQR-G--KTIVTSMHQPSSRVYQMFDKV 288 (679)
Q Consensus 218 LSgGerqRv~IA~aL~--~~P~lllLDEPtsgLD~~~-~~~i~~~L~~l~~~-g--~tii~~tH~~~~~i~~~~D~v 288 (679)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. | ..+.++.|+-. .+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 899887 4566666 67889998 7899876 67788888888764 4 35666666633 354555543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.9e-06 Score=80.95 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=26.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
++|++++|+||||||||||++.|++..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998764
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.82 E-value=7.6e-05 Score=79.48 Aligned_cols=139 Identities=12% Similarity=0.145 Sum_probs=76.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCc-CCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRL-HQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL 177 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~-~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 177 (679)
+-+++|+++.|.||+|+|||||+..++... .+.. . .| ....+.|+.-+..+ ...+-......
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~-~------gg------~~~~vlyi~~E~~~----~~~~l~~~~~~ 179 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGA-G------GY------PGGKIIFIDTENTF----RPDRLRDIADR 179 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBT-T------TB------CCCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccc-c------CC------CCCeEEEEECCCCC----CHHHHHHHHHH
Confidence 468999999999999999999999988742 1100 0 00 01234455443321 22222222211
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHH-HHHHHHHHHHh----hCCCeEEEeCCCCCCCHH-
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGE-RKRVSIAHEML----INPSLLILDEPTSGLDST- 251 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~IA~aL~----~~P~lllLDEPtsgLD~~- 251 (679)
+. ... +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 180 ~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~ 236 (343)
T 1v5w_A 180 FN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDF 236 (343)
T ss_dssp TT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHC
T ss_pred cC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHh
Confidence 11 111 1223322111 1123322 34555566666 568999999999866432
Q ss_pred -----------HHHHHHHHHHHHHhC-CcEEEEEeCCc
Q 005754 252 -----------AAYRLVSTLGSLVQR-GKTIVTSMHQP 277 (679)
Q Consensus 252 -----------~~~~i~~~L~~l~~~-g~tii~~tH~~ 277 (679)
...+++..|++++++ |.+||++.|-.
T Consensus 237 ~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 237 SGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 134566666776654 88998888863
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.5e-05 Score=83.87 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=84.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
-.-|+++.+-+++|+++.|.|++|+|||||+.-++..... +| ..+.|+.=+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~----------~g--------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD----------ND--------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT----------TT--------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC--------CeEEEEECC------CCHHH
Confidence 3457777777999999999999999999999888753211 01 124444322 33333
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
.. .+.......+.+.+..+ |. ..||.+|++|+..|...+.++++++.|+|...
T Consensus 111 l~------------------~R~~~~~~~i~~~~l~~---~~---~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NI------------------KRLIVTAGSINAQKIKA---AR---RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HH------------------HHHHHHHTTCCHHHHHS---CH---HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HH------------------HHHHHHHcCCCHHHHhc---CC---CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 22 12211111111111110 10 13899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHhC-CcE--EEEEeCC
Q 005754 251 TAAYRLVSTLGSLVQR-GKT--IVTSMHQ 276 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~-g~t--ii~~tH~ 276 (679)
..++.+.++++.++ |.. +|++-|-
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 45567777777654 666 8888763
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=7.9e-05 Score=78.63 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=76.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCc-CCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRL-HQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSL 177 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~-~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 177 (679)
+-+++|+++.|.||+|+|||||+..++... .+. . .| | ....+.|+.-+..+ ...+-......
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~-~-~g-----g------~~~~vlyi~~e~~~----~~~~l~~~~~~ 164 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPP-E-KG-----G------LSGKAVYIDTEGTF----RWERIENMAKA 164 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCG-G-GT-----C------CSCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhccc-c-cC-----C------CCCeEEEEECCCCC----CHHHHHHHHHH
Confidence 568999999999999999999999888643 210 0 00 0 01234455433221 12221111111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHH-HHHHHHHHHHHh---hCCCeEEEeCCCCCCCH---
Q 005754 178 LRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGG-ERKRVSIAHEML---INPSLLILDEPTSGLDS--- 250 (679)
Q Consensus 178 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~IA~aL~---~~P~lllLDEPtsgLD~--- 250 (679)
+. ... +++++.+- +. +..++. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 165 ~g----~~~-------~~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~ 221 (324)
T 2z43_A 165 LG----LDI-------DNVMNNIY--------YI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP 221 (324)
T ss_dssp TT----CCH-------HHHHHTEE--------EE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC
T ss_pred hC----CCH-------HHHhccEE--------EE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc
Confidence 11 111 11222111 11 113333 335677777787 56899999999976532
Q ss_pred -----HH----HHHHHHHHHHHHhC-CcEEEEEeCC
Q 005754 251 -----TA----AYRLVSTLGSLVQR-GKTIVTSMHQ 276 (679)
Q Consensus 251 -----~~----~~~i~~~L~~l~~~-g~tii~~tH~ 276 (679)
.. ..+++..|++++++ |.+||++.|-
T Consensus 222 ~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 222 GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 11 24556666666654 8899998775
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.8e-06 Score=91.14 Aligned_cols=44 Identities=30% Similarity=0.265 Sum_probs=37.9
Q ss_pred ccccccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 86 AKIQERTILNGITGMVSPGE------ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge------~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..++.++.|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 68 ~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 68 FYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566778888888888776 999999999999999999999875
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.4e-06 Score=81.64 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=31.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK 144 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~ 144 (679)
..++|++++|.|+||||||||+++|+|. .|+|.+.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 3368999999999999999999999997 2456666655
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.3e-05 Score=92.89 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=72.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCCHHHHHH
Q 005754 98 TGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLTVRETLV 173 (679)
Q Consensus 98 s~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~ 173 (679)
|+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..... +.++.+++.+|...+... +++.|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n-- 77 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF-- 77 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE--
Confidence 3567889999999999999999999999754321 124555 34433211 223445555554332211 11110
Q ss_pred HHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 005754 174 FCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAA 253 (679)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~ 253 (679)
..||+ |.. .++ .......-..+..++++| |+.|+|+.+.
T Consensus 78 -------------------------------liDTp-G~~---~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~ 116 (665)
T 2dy1_A 78 -------------------------------LLDAP-GYG---DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE 116 (665)
T ss_dssp -------------------------------EEECC-CSG---GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH
T ss_pred -------------------------------EEeCC-Ccc---chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH
Confidence 11111 110 011 111122234677888999 9999998876
Q ss_pred HHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 254 YRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 254 ~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
. .++.+.+.+.++|++.|...
T Consensus 117 ~----~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 R----AWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp H----HHHHHHHTTCCEEEEEECGG
T ss_pred H----HHHHHHHccCCEEEEecCCc
Confidence 3 33334446888888888754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.2e-05 Score=76.87 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=26.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+++|++++|+|+||||||||.+.|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999999865
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.3e-05 Score=85.18 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999998664
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=5.4e-05 Score=71.84 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+|++++|+|||||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999864
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.4e-05 Score=72.14 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=6.5e-05 Score=70.18 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=24.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+.++++.+| +.+|+|||||||||+|++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344556665 999999999999999999874
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.6e-05 Score=74.74 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=25.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|++++|+||||||||||++.|.+..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999998764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00045 Score=75.66 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=68.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPR 182 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 182 (679)
++.+++++||+|+||||++..|++.+.+.+ +.| .++.-|.. . ....|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kV---------------llv~~D~~--r-~~a~eqL~--------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKV---------------GLVAADVY--R-PAAYDQLL--------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCE---------------EEEEECCS--C-HHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeE---------------EEEecCcc--c-hhHHHHHH---------
Confidence 588999999999999999999998775321 222 22222210 0 01122221
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHHHH
Q 005754 183 TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT-SG--LDSTAAYRLVST 259 (679)
Q Consensus 183 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPt-sg--LD~~~~~~i~~~ 259 (679)
..-+..|+.-... . .+..--+--+-+++.+...+++++|+|+|. .+ .|+....++.++
T Consensus 146 ------------~~~~~~gv~~~~~---~----~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i 206 (433)
T 3kl4_A 146 ------------QLGNQIGVQVYGE---P----NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEM 206 (433)
T ss_dssp ------------HHHHTTTCCEECC---T----TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHH
T ss_pred ------------HHHHhcCCceeec---c----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHH
Confidence 1222334332110 0 011111222234555555689999999997 35 788877777776
Q ss_pred HHHHHhCCcEEEEEeCC
Q 005754 260 LGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 260 L~~l~~~g~tii~~tH~ 276 (679)
++.+......+++..|.
T Consensus 207 ~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 207 YDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHCCSEEEEEEEGGG
T ss_pred HHhhCCcceEEEEeCcc
Confidence 66554344555555554
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=6.1e-05 Score=75.47 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCe
Q 005754 219 SGGERKRVSIAHEMLINPSLLILDEPTS-GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDK 287 (679)
Q Consensus 219 SgGerqRv~IA~aL~~~P~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~ 287 (679)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-+++++|..-+.+.+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655543 33578899999999976 68877665555555444333456776654445545556553
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.37 E-value=4.9e-05 Score=74.35 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=27.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
.++|++++|+|+||||||||++.|++.+++
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999998754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00086 Score=66.98 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=29.7
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCC
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR--GKTIVTSMHQ 276 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~tH~ 276 (679)
.+|+++|+..+.+.++......+..+++.+... ..++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998889887665555554443221 3588888884
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.34 E-value=1.7e-05 Score=84.36 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=42.1
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
.+..++++.+.+++++++.+++|.+++|+|++|+|||||++.|++...+
T Consensus 34 ~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 34 RHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3445556677889999999999999999999999999999999997754
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00053 Score=71.36 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=26.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788899999999999999999999865
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.30 E-value=9.3e-05 Score=81.16 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=28.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+++.+|++++|+|||||||||||++|+++..+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999999998765
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.22 E-value=6.7e-05 Score=84.84 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=34.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEE-ECCCC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTIL-TNNNK 144 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~-~~g~~ 144 (679)
.+++|++++|+|+||||||||+++|+|++.+.++ |.+. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G--~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG--RCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS--SCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCC--ceEEEECCcH
Confidence 4789999999999999999999999999876321 2453 66543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.21 E-value=3.1e-05 Score=87.63 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=44.5
Q ss_pred CccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 005754 83 GSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN 142 (679)
Q Consensus 83 ~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g 142 (679)
++.+.++...+++++++++ +|+.++|+||||+|||||+++|++...+ ..|.+..++
T Consensus 88 ~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~ 143 (543)
T 3m6a_A 88 KVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGG 143 (543)
T ss_dssp HHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC
T ss_pred HHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEecc
Confidence 3445555666788888888 8999999999999999999999998753 356666655
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0055 Score=65.44 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=27.8
Q ss_pred eeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 94 LNGIT--GMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 94 L~~vs--~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
|+.+- +-+++|+++.|.||+|+|||||...++..
T Consensus 51 LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 51 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44442 35889999999999999999999887764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00079 Score=70.49 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=34.7
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 233 LINPSLLILDEPTS-GLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 233 ~~~P~lllLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
..++++|++||+-. .-|......+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999865 2344778889999988887777777777754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00026 Score=69.82 Aligned_cols=44 Identities=7% Similarity=0.103 Sum_probs=30.7
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcE-EEEEeCCc
Q 005754 234 INPSLLILDEPTSGL-DSTAAYRLVSTLGSLVQRGKT-IVTSMHQP 277 (679)
Q Consensus 234 ~~P~lllLDEPtsgL-D~~~~~~i~~~L~~l~~~g~t-ii~~tH~~ 277 (679)
.+|.++++||.-.-- +......+.+.+.++.+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 568999999965432 233377788888887766654 77777753
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=69.30 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=25.1
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+.++.+.+| +++|+|||||||||++++|.-.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 345566665 9999999999999999998643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00019 Score=71.85 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=27.7
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 93 ILNGITGMVS---PGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 93 iL~~vs~~i~---~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4677888777 9999999999999999999999998763
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0036 Score=65.59 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+-+++|+++.|.||+|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0014 Score=63.54 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999998653
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00089 Score=68.48 Aligned_cols=28 Identities=25% Similarity=0.570 Sum_probs=24.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999864
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0018 Score=64.61 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=43.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC---------CccHHHHHhCCeEEEEe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH---------QPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH---------~~~~~i~~~~D~v~lL~ 292 (679)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .+..++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999954 654 355667777777999999999 66678899999999875
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0004 Score=68.52 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=37.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEE--------CCCCcc-----ccccCcEEEEecCC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILT--------NNNKPT-----KHISKRTGFVTQDD 160 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~--------~g~~~~-----~~~~~~i~yv~Q~~ 160 (679)
+.+++|+|||||||||+.++|++.+.......|++.. +|.+.. ..+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999865211113455544 444322 12445677777753
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00044 Score=65.84 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=25.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++|++++|+|++||||||+.+.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999764
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.002 Score=70.83 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=80.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHHH
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRET 171 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 171 (679)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++....... | ..+.|+.=+ ++..+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---------g--------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE---------G--------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---------C--------CCEEEEESS------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---------C--------CeEEEEECC------CCHHHH
Confidence 34666666799999999999999999999988876432100 1 124443321 232221
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 005754 172 LVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDST 251 (679)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~ 251 (679)
..+... ...++.... +. ...|+..+.+|+.-|...+.+.++++.|+|. ++.
T Consensus 245 ------------------~~R~~~--~~~~i~~~~---l~---~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~- 295 (444)
T 2q6t_A 245 ------------------TLRMMC--SEARIDMNR---VR---LGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL- 295 (444)
T ss_dssp ------------------HHHHHH--HHTTCCTTT---CC---GGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH-
T ss_pred ------------------HHHHHH--HHcCCCHHH---Hh---CCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH-
Confidence 111111 122332210 11 1259999999999998888888999988874 333
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEeC
Q 005754 252 AAYRLVSTLGSLVQ-RGKTIVTSMH 275 (679)
Q Consensus 252 ~~~~i~~~L~~l~~-~g~tii~~tH 275 (679)
.++...++++.+ .|..+|++-+
T Consensus 296 --~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 296 --MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp --HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred --HHHHHHHHHHHHHcCCCEEEEcC
Confidence 345666666654 4777777755
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0011 Score=68.67 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=23.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+.|.||+|+|||||.++|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 6899999999999999999999764
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00061 Score=65.37 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=28.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNN 142 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g 142 (679)
.+++|+|+||||||||++.|.+.+...+...|.+..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 57899999999999999999987643222356666544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0012 Score=63.27 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=20.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
..+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 34789999998888 5689999999999999999974
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0065 Score=64.68 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00061 Score=72.67 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=26.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+++.+++|+|++|||||||+|.|+|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 46789999999999999999999997654
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00056 Score=66.71 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
...+|.+++|+||||||||||.+.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999999865
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00047 Score=74.01 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=43.5
Q ss_pred ccCCCCccccccc-cceee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 78 STDDQGSTAKIQE-RTILN--------------GITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 78 ~~~~~~~~~~~~~-~~iL~--------------~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.+++++..|.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3566777777654 55888 899999999999999999999999999999865
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0006 Score=65.44 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 96 GITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 96 ~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777888999999999999999999999875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0018 Score=68.63 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0036 Score=68.86 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=28.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
-|+.+.+-+++|+++.|.|++|+|||||.--++..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 45555556899999999999999999998777653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00082 Score=63.46 Aligned_cols=27 Identities=48% Similarity=0.679 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0059 Score=61.22 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 444568899999999999999999854
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00018 Score=76.04 Aligned_cols=47 Identities=21% Similarity=0.454 Sum_probs=40.3
Q ss_pred ccccccccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCcCC
Q 005754 84 STAKIQERTILNGITGMVSPGEI--LAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 84 ~~~~~~~~~iL~~vs~~i~~Ge~--~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
+...++...+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 44455667789999999999998 999999999999999999997653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00081 Score=65.26 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=71.72 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=29.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC----CCC-----CeeeEEEECCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH----QGH-----GLTGTILTNNNK 144 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~----~~~-----~~~G~i~~~g~~ 144 (679)
.++|+|+||+|||||+|.|.|... +.. ...|.+.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 699999999999999999999742 111 245777777753
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00042 Score=74.24 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=35.4
Q ss_pred CCCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 80 DDQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 80 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
...++...++++.+++++++.| +|+|++|+|||||++.|.|...
T Consensus 19 ~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 19 GFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp --CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred EeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 3455566677788899999987 9999999999999999988643
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=70.84 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=27.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~ 125 (679)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 36677788776 99999999999999999986
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00071 Score=73.99 Aligned_cols=53 Identities=17% Similarity=0.067 Sum_probs=39.3
Q ss_pred cccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCC
Q 005754 85 TAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNK 144 (679)
Q Consensus 85 ~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~ 144 (679)
.+.++... +++++. +|++++++|+||+||||++..|++.+.+. .+.|.+.+.+
T Consensus 83 ~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 83 KEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp HHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred HHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 33444433 678887 89999999999999999999999988753 3455554443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00022 Score=75.91 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=34.1
Q ss_pred cceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCcC
Q 005754 91 RTILNGITGMVSPGEI--LAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~--~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3477888888889988 99999999999999999998653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.031 Score=58.60 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..-+.|.||+|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=62.05 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=25.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|.++.|+|++||||||+.+.|+..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999998765
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0015 Score=64.05 Aligned_cols=29 Identities=34% Similarity=0.327 Sum_probs=26.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|.+++|.|++||||||+.+.|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999999999775
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0019 Score=61.51 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0019 Score=60.21 Aligned_cols=23 Identities=39% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0016 Score=63.22 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0027 Score=63.31 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=49.0
Q ss_pred HHhhCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEeC-----Cc----------------cHHHHHhCCeE
Q 005754 231 EMLINPSLLILDEPTSG-LDSTAAYRLVSTLGSLVQRGKTIVTSMH-----QP----------------SSRVYQMFDKV 288 (679)
Q Consensus 231 aL~~~P~lllLDEPtsg-LD~~~~~~i~~~L~~l~~~g~tii~~tH-----~~----------------~~~i~~~~D~v 288 (679)
++..+|+++++||+-.- .+........+.+..+...|..++.|+| .. .+.+++.+|.|
T Consensus 80 ~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v 159 (228)
T 2r8r_A 80 LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDL 159 (228)
T ss_dssp HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEE
T ss_pred HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeE
Confidence 34578999999998642 3322223334444445567889999998 11 12355667777
Q ss_pred EEEeCCeEEEecChhhHHHHHHHcCCCCC
Q 005754 289 LVLSEGRCLYFGKGSEAMSYFESVGFSPS 317 (679)
Q Consensus 289 ~lL~~G~iv~~G~~~~~~~~f~~~g~~~~ 317 (679)
.+++ -+|+++.+.+.+-..-.|
T Consensus 160 ~lvD-------~~p~~l~~rl~~g~vy~~ 181 (228)
T 2r8r_A 160 VLID-------LPPRELLERLRDGKVYVP 181 (228)
T ss_dssp EEBC-------CCHHHHHHHHHTTCCCCT
T ss_pred EEec-------CCHHHHHHHHHCCCccCh
Confidence 7664 478887777665433333
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.00044 Score=67.00 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=30.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 357888888888875 689999999999999999873
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0026 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.087 Score=58.57 Aligned_cols=34 Identities=26% Similarity=0.149 Sum_probs=27.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 3444444589999999999999999999877764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.075 Score=56.82 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=24.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 579999999999999999999977764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.003 Score=59.58 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0027 Score=63.31 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999999754
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0054 Score=64.05 Aligned_cols=52 Identities=13% Similarity=0.051 Sum_probs=29.9
Q ss_pred hhCCCeEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 233 LINPSLLILDEPT-SGLDSTAAYRLVS-TLGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 233 ~~~P~lllLDEPt-sgLD~~~~~~i~~-~L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
+.++++|++||.- ..+++..+..++. +|......++.+|+||+.+..++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 4578999999983 2344444444554 66554344667888888766555443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0021 Score=64.87 Aligned_cols=35 Identities=26% Similarity=0.641 Sum_probs=25.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.++++++..++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666666 88999999999999999998653
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.02 Score=72.03 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=26.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 49999999999999999999999988754
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0031 Score=59.65 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.003 Score=59.95 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.025 Score=54.89 Aligned_cols=53 Identities=13% Similarity=0.317 Sum_probs=41.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC---------CccHHHHHhCCeEEEEe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH---------QPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH---------~~~~~i~~~~D~v~lL~ 292 (679)
+.+++++||--- +|+. .++.+++++..|..||++-+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999533 6543 36677887778999999999 55678899999998775
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.004 Score=59.19 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
|.++.|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.023 Score=54.53 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=29.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
++.++++||. ..+++.....+.+.+.+. ..+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6789999995 457777777777776653 2356677777765
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0041 Score=62.45 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0038 Score=59.51 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0044 Score=59.04 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++|+|++|||||||++.|...+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0012 Score=68.89 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=30.3
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 95 NG-ITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 95 ~~-vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
++ +++..+ |++++++|+||+||||++..|++...+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45 777766 999999999999999999999997753
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0046 Score=62.64 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999865
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0032 Score=63.60 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=29.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 344443 567788999999999999999999998654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0051 Score=60.25 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0043 Score=67.08 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
..+..|..++|+|+||+|||||+|.|+|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34567888999999999999999999996
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0052 Score=57.07 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 005754 106 ILAILGPSGSGKSTMLNVL 124 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L 124 (679)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.02 Score=52.32 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=30.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
+..++++||.- .|++..+..+.+.+.+..+.+..+|++|+.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999964 6788888888888877544456677777654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0061 Score=57.87 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998654
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0064 Score=58.53 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999865
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0056 Score=59.28 Aligned_cols=23 Identities=48% Similarity=0.720 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0063 Score=58.43 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998653
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0056 Score=57.99 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46788999999999999999998543
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0073 Score=58.34 Aligned_cols=27 Identities=33% Similarity=0.526 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998654
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.025 Score=55.82 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC---------CccHHHHHhCCeEEEEe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMH---------QPSSRVYQMFDKVLVLS 292 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH---------~~~~~i~~~~D~v~lL~ 292 (679)
+.+++++||--- +|+. .++.|++++..|+.||++-+ .+..++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 479999999865 6543 33777887778999999999 77888999999999875
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0078 Score=56.52 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G 126 (679)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.05 Score=57.76 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 344568899999999999999999754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0073 Score=62.39 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..|.++.|.|||||||||+.+.|+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998754
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0076 Score=56.86 Aligned_cols=23 Identities=43% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999754
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.075 Score=56.98 Aligned_cols=26 Identities=31% Similarity=0.640 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.-+.|.||+|+|||||.+.|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0079 Score=58.29 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998754
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0041 Score=60.45 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0078 Score=57.48 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998644
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0085 Score=57.56 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~ 127 (679)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999975
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.011 Score=61.76 Aligned_cols=38 Identities=37% Similarity=0.323 Sum_probs=33.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
.....+|+....+ .|.-++|+|+||+|||||...|.++
T Consensus 130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3457899988888 7899999999999999999999874
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+.+++|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0091 Score=57.90 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999999754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0077 Score=61.35 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999964
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.0096 Score=56.49 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.021 Score=55.80 Aligned_cols=38 Identities=34% Similarity=0.365 Sum_probs=31.0
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
.....++..-..+ .|..++|+||+|+|||||...|+.+
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3455778877665 5789999999999999999999865
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.0098 Score=56.90 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.014 Score=57.25 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.25 Score=62.41 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=47.2
Q ss_pred HHHHHHh--hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---H-hCCcEEEEEeCCcc---------
Q 005754 227 SIAHEML--INPSLLILDEPTSGLDS-------------TAAYRLVSTLGSL---V-QRGKTIVTSMHQPS--------- 278 (679)
Q Consensus 227 ~IA~aL~--~~P~lllLDEPtsgLD~-------------~~~~~i~~~L~~l---~-~~g~tii~~tH~~~--------- 278 (679)
.+++.++ .+|+++++|..++=... ...+.+.+.+++| + +.|.+||++.|-..
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4455554 47999999999876641 1223445555555 3 35999999988421
Q ss_pred ------HHHHHhCCeEEEEeCCeEEEec
Q 005754 279 ------SRVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 279 ------~~i~~~~D~v~lL~~G~iv~~G 300 (679)
..+...+|-++.+.+.+.+..|
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred ccCCCCcceeeeCCEEEEEEeccccccC
Confidence 2466789988888765443333
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.06 Score=68.75 Aligned_cols=76 Identities=9% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---Hh-CCcEEEEEeCCccH------
Q 005754 225 RVSIAHEML--INPSLLILDEPTSGLD-S------------TAAYRLVSTLGSL---VQ-RGKTIVTSMHQPSS------ 279 (679)
Q Consensus 225 Rv~IA~aL~--~~P~lllLDEPtsgLD-~------------~~~~~i~~~L~~l---~~-~g~tii~~tH~~~~------ 279 (679)
-+.+++.++ .+|+++++|.-++=.. + .....+.+.|++| ++ .|.+||++.|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 445666665 4699999999876552 1 1233455666666 44 58999999884211
Q ss_pred ---------HHHHhCCeEEEEeCCeEEEec
Q 005754 280 ---------RVYQMFDKVLVLSEGRCLYFG 300 (679)
Q Consensus 280 ---------~i~~~~D~v~lL~~G~iv~~G 300 (679)
.+...+|-++.|.+......|
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred CCcCCCCcchhhhhCCEEEEEEecccccCC
Confidence 366788999998765544433
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999854
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.013 Score=56.39 Aligned_cols=23 Identities=48% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999854
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.011 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.014 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998643
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.014 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999854
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.011 Score=55.82 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=18.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=57.50 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++.++.|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.016 Score=53.47 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998753
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.037 Score=61.52 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=23.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455568999999999999999998754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999864
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=54.12 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.016 Score=53.45 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.016 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.017 Score=56.23 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.016 Score=60.45 Aligned_cols=23 Identities=48% Similarity=0.654 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.019 Score=55.33 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+-+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998644
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.016 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.016 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.019 Score=54.57 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998755
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.014 Score=55.16 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.015 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999754
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.02 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++++|.|+.||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.18 Score=54.84 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=23.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++-.=+.|.||+|+|||+|.++||+...
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 3334488999999999999999998653
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.022 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998743
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.02 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.015 Score=55.06 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.19 Score=50.12 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=44.0
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC---------ccHHHHHhCCeEEEEe
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ---------PSSRVYQMFDKVLVLS 292 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~---------~~~~i~~~~D~v~lL~ 292 (679)
.+.+++++||----.| +.+.++.+++.|+.||++-++ +..++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876643 666666666689999999999 8888999999999875
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.022 Score=57.65 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.02 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.017 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999885
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.022 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998744
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.017 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.017 Score=54.54 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.019 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.019 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.022 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.022 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.02 Score=52.69 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.018 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999853
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.019 Score=54.45 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+++|+|++||||||+-+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999998754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.021 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.021 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=52.17 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.027 Score=56.49 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++-.++|.||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999998543
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.014 Score=54.64 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
-++|+|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999875
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.023 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.023 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999999753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.024 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.026 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-++|+|++|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 368999999999999999998654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.025 Score=58.79 Aligned_cols=25 Identities=48% Similarity=0.694 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.| .++|+|++|+|||||+|.|.|..
T Consensus 7 ~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 44 58999999999999999999853
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.021 Score=52.92 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.025 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.024 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.028 Score=54.45 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
.-+++|.|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.032 Score=52.10 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+..+.|.||+|+|||||++.++....
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999987653
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.028 Score=56.52 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.022 Score=58.13 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.025 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.024 Score=60.89 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=36.6
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 235 NPSLLILDEPTSGLD---STAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 235 ~P~lllLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.|.++++||-=.=++ +.....+.+.+++.++.|..++++||.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 478999999877774 667778888888888888999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.026 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.47 Score=51.81 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999997654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.027 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998854
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.025 Score=57.35 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.028 Score=52.86 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.=-++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.028 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999876653
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.025 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.028 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.023 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.032 Score=55.00 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.026 Score=60.41 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.029 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999854
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.28 Score=50.71 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 235 NPSLLILDEPTSGLD-STAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 235 ~P~lllLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
+++++++||.- .|. ......+.+.+.+.. .+..+|++++++.
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc
Confidence 78999999984 344 556666666666543 3567888887754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.72 E-value=0.027 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.028 Score=56.51 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.018 Score=59.60 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=19.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.027 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.028 Score=53.47 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=93.66 E-value=0.031 Score=52.17 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.033 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998854
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.03 Score=55.86 Aligned_cols=30 Identities=30% Similarity=0.557 Sum_probs=22.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+..+|.++.+.|++||||||+.+.|+..+.
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999987654
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.032 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.033 Score=52.65 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.031 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.58 E-value=0.034 Score=56.35 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.0075 Score=58.67 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=30.9
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7887777776666542 23678888888754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.019 Score=55.81 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.032 Score=57.24 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G 126 (679)
.+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.042 Score=54.12 Aligned_cols=28 Identities=43% Similarity=0.644 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-+|.++.+.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987664
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.032 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.034 Score=53.21 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.035 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.46 E-value=0.036 Score=51.67 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.031 Score=53.56 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999854
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.033 Score=56.92 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|.+|+|||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.033 Score=57.51 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|+.|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.048 Score=57.58 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.++.|+||+|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56789999999999999999999765
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.036 Score=52.47 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|+.|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.044 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++..++.|+||+||||+|.-+.|+-.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 455789999999999999999998654
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.033 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.07 Score=50.89 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=28.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+..+|..-..+ .|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45666666665 588999999999999999988875
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.037 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.033 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999854
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.037 Score=52.67 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.037 Score=54.37 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.039 Score=58.93 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~ 127 (679)
-.++|+|.+|+|||||+|.|+|.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999984
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.036 Score=52.32 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.035 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.028 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.037 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.042 Score=56.40 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G 126 (679)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.033 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.037 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998643
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.038 Score=52.46 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.038 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.038 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.046 Score=54.12 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.042 Score=53.16 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999754
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.04 Score=51.39 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+..+.|.||+|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999987653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.033 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.036 Score=53.59 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988743
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.033 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++++|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.046 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.+++.|+|++||||||+.+.|+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998643
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.047 Score=52.06 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.039 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.047 Score=54.73 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988664
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.046 Score=51.82 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47999999999999999988743
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.046 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998643
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.054 Score=59.61 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=28.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 94 L~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.+ ..+-+|+..+|+||+|+|||||++.|++..
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 3444 456689999999999999999999998754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.04 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.047 Score=52.69 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.91 E-value=0.042 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.032 Score=52.23 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.05 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 379999999999999999999765
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.059 Score=56.33 Aligned_cols=25 Identities=40% Similarity=0.674 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.046 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.041 Score=53.60 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.068 Score=52.68 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=38.5
Q ss_pred hhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHH---------HHHhCCeEEEEe
Q 005754 233 LINPSLLILDEPTS----GLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSR---------VYQMFDKVLVLS 292 (679)
Q Consensus 233 ~~~P~lllLDEPts----gLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~---------i~~~~D~v~lL~ 292 (679)
-.+|+++++|--+. .-|.....+++..|++++++ |.+++++.|..... +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34788888885432 11445566777888888764 99999999864221 234677777764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.044 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999763
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.056 Score=53.44 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999998765
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.057 Score=53.21 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988664
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=92.72 E-value=0.046 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999853
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.13 Score=61.05 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998664
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.067 Score=53.15 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=92.68 E-value=0.044 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987653
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.43 Score=61.07 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=25.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
=+++|+.+.|.||+|+|||||...++.
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999988865
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.67 E-value=0.06 Score=53.54 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997653
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.05 Score=54.98 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.031 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.053 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.063 Score=52.60 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.053 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.068 Score=52.34 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.019 Score=60.12 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
+++++++|| ...|++.....+.+.+.+... +..+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999988888888877543 345666776654
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=92.38 E-value=0.067 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++.|+||+|||||||-+.|+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.065 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998854
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=0.063 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++|+|++|+|||||++-+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.062 Score=51.60 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998743
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.09 E-value=0.044 Score=51.69 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
-++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999965
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.065 Score=54.50 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998654
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.01 E-value=0.032 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=91.91 E-value=0.093 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999754
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.067 Score=58.75 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005754 222 ERKRVSIAHEMLINPSLLILDEPT-SGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQ 276 (679)
Q Consensus 222 erqRv~IA~aL~~~P~lllLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~~tH~ 276 (679)
|++....+...+.+++++++.... .++.... ..+.+.|+ +.++.+|++.+.
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK 140 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNK 140 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEEC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEEC
Confidence 566666777777888876655444 4555554 44555543 457777777765
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.071 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.08 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.37 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999865
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.091 Score=50.34 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=37.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc---------HHHHHhCCeEEEEe
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS---------SRVYQMFDKVLVLS 292 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~---------~~i~~~~D~v~lL~ 292 (679)
+++++++||-=- +|+ .+++.|+++++.|..|+++-++.. ..+...+|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999643 443 366777878778999999988432 44566788886654
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.075 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=91.39 E-value=0.24 Score=54.86 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=53.1
Q ss_pred CcccCHHHHHHHHHHHH--Hhh--------------CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCc
Q 005754 215 IRGISGGERKRVSIAHE--MLI--------------NP-SLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQP 277 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~a--L~~--------------~P-~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~ 277 (679)
.+++||||+|-.-+|.+ ++. ++ .++++||. +-+|...+...++.++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 56899999996544433 322 12 57999999 999999999999999976 7777777654
Q ss_pred cHHHHHhCCeEEEEe
Q 005754 278 SSRVYQMFDKVLVLS 292 (679)
Q Consensus 278 ~~~i~~~~D~v~lL~ 292 (679)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2556778888764
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.099 Score=56.46 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+++|+||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998754
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.14 Score=54.15 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..-.++|+|++|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999999987653
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.098 Score=47.72 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
+..+|++||.- .|++..+..+.+.|... ..+..+|++|+.+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 45689999984 68888888888888332 224567777776543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.13 Score=54.00 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+-+.+|..+.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999875
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.11 Score=53.18 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++.-+.|.||+|+|||||.+.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999987653
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.057 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.722 Sum_probs=22.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
....| +.|.||+|+|||||.++|+...
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33444 7799999999999999999854
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.12 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+||+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998654
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=0.14 Score=51.72 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..-+.|.||+|+|||||.+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345578899999999999999999753
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.52 E-value=0.14 Score=52.65 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++++|.+|+|||||+|.|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 468999999999999999999865
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=90.46 E-value=0.092 Score=55.58 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=90.43 E-value=0.15 Score=52.95 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998875
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=90.30 E-value=0.12 Score=55.83 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 192 IAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 192 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45667777766542 125899998888777666778988887
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.053 Score=51.94 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 489999999999999998875
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=0.17 Score=49.36 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
|.++++=|+-||||||+.+.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999998664
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.12 Score=56.24 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|.|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=90.14 E-value=0.23 Score=51.76 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=29.4
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 89 ~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
.....+|+.-..+ .|.-++|.|+||+|||||.-.|..
T Consensus 133 a~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 133 ATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp CCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred hhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4456788865555 688899999999999999877754
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.13 E-value=0.036 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=90.10 E-value=0.098 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHH-HhcC
Q 005754 106 ILAILGPSGSGKSTMLNV-LAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~-L~G~ 127 (679)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 6554
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=89.91 E-value=0.15 Score=53.64 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 679 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-38 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-37 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-37 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 9e-34 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-33 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-32 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-31 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-31 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-31 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-30 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-29 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-29 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-28 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-26 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-23 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-09 | |
| d1f5na2 | 277 | c.37.1.8 (A:7-283) Interferon-induced guanylate-bi | 0.002 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.002 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.002 | |
| d3adka_ | 194 | c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [ | 0.003 | |
| d1y63a_ | 174 | c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma | 0.003 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.004 | |
| d2p67a1 | 327 | c.37.1.10 (A:1-327) LAO/AO transport system kinase | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 138 bits (349), Expect = 8e-38
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 12/213 (5%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILT--NNN 143
+ L + + GE ++I+GPSGSGKSTMLN++ G + +++
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
+ TK + GFV Q L P LT E + + + +S +E+ A + L
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ N +SGG+++RV+IA + NP +++ D+PT LDS +++ L L
Sbjct: 136 ER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 264 VQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGR 295
+ GKT+V H + V + ++++ L +G
Sbjct: 192 NEEDGKTVVVVTHDIN--VARFGERIIYLKDGE 222
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 136 bits (345), Expect = 3e-37
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 11/216 (5%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
T +N + + GE L +LGPSG GK+T L ++AG G +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPK 76
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+ V Q ++PH+TV E + F + + E L + +
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKI---KKFPKDEIDKRVRWAAELLQIEE----- 128
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGK 268
+ N + +SGG+R+RV++A +++ P +L++DEP S LD+ + + + L +
Sbjct: 129 LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
T + H M D++ V++ G+ L G +E
Sbjct: 189 TTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPTE 223
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 137 bits (347), Expect = 5e-37
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHIS 150
+L I + GE+LAI G +GSGK+++L ++ G L G I S
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG---IIK---------HS 96
Query: 151 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL---GLTKCEN 207
R F +Q + P T++E ++F + S+ +A + + +N
Sbjct: 97 GRVSFCSQFSWIMPG-TIKENIIF------GVSYDEYRYKSVVKACQLQQDITKFAEQDN 149
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
T++G + +SGG+R R+S+A + + L +LD P LD ++ + +
Sbjct: 150 TVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 208
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
KT + + + DK+L+L +G ++G SE S
Sbjct: 209 KTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 134 bits (339), Expect = 4e-36
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 21/229 (9%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--------------RLHQGHGLT 135
+L G++ G++++I+G SGSGKST L + ++
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 73
Query: 136 GTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEA 195
G + + + + R V Q L+ H+TV E ++ + LS + A
Sbjct: 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALK 131
Query: 196 VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYR 255
+A++G+ + + +SGG+++RVSIA + + P +L+ DEPTS LD
Sbjct: 132 YLAKVGIDE----RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 256 LVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
++ + L + GKT+V H+ + V+ L +G+ G +
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPEQ 235
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 132 bits (332), Expect = 3e-35
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 18/227 (7%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTK 147
E L+G++ V+ G++ I+GP+GSGKST++NV+ G + +G N +P +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVF----------CSLLRLPRTLSTKEKTSIAEAVM 197
Q +TV E L+ SL +E A ++
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 198 AELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLV 257
L L+ + G +SGG+ K V I ++ NP ++++DEP +G+ A+ +
Sbjct: 136 EFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190
Query: 258 STLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+ + L +G T + H+ V D + V+ G+ + G+G E
Sbjct: 191 NHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEE 236
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 129 bits (325), Expect = 2e-34
Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 9/222 (4%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
++ IL GI+ + GEI ++GP+G+GK+T L +++ + G+ N + +
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 73
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
K ++ ++ Y ++ E + + S+ E + E GL +
Sbjct: 74 RKLISYLPEEAGAYRNMQGIE---YLRFVAGFYASSSSEIEEMVERATEIAGLGE----- 125
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKT 269
+ S G +++ IA +++NP L ILDEPTSGLD A + L Q G T
Sbjct: 126 KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 185
Query: 270 IVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFES 311
I+ S H V + D++ ++ G + G E +++
Sbjct: 186 ILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 127 bits (320), Expect = 9e-34
Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 11/217 (5%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG--RLHQGHGLTGTILTNNNKPTK 147
+ GI V G+I+ ++G +G+GK+T L+ +AG R +G + N
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 148 HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCEN 207
V + ++P LTV E L+ + R + K + L +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLK 134
Query: 208 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRG 267
+ G +SGGE++ ++I ++ P LL++DEP+ GL + + + Q G
Sbjct: 135 QLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 268 KTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
TI+ ++ VL G+ + GK SE
Sbjct: 190 TTILLVEQNALG-ALKVAHYGYVLETGQIVLEGKASE 225
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 127 bits (321), Expect = 1e-33
Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 22/227 (9%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNK 144
E IL I + GE +A +G SG GKST++N++ G IL + +
Sbjct: 29 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG---QILIDGHNIKDF 85
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEK-TSIAEAVMAE---L 200
T + + G V Q D + TV+E + L R +T E+ A+ A +
Sbjct: 86 LTGSLRNQIGLV-QQDNILFSDTVKENI------LLGRPTATDEEVVEAAKMANAHDFIM 138
Query: 201 GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTL 260
L + +T +G ++ +SGG+++R+SIA L NP +LILDE TS LD + + L
Sbjct: 139 NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL 197
Query: 261 GSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L + +T + H+ S DK++V+ G + G E ++
Sbjct: 198 DVL-SKDRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHRELIA 241
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 124 bits (313), Expect = 1e-32
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 19/226 (8%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKH 148
+E L I + G+ +A++G SGSGKST+ +++ G IL + + ++
Sbjct: 26 REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG---HILMDGHDLREY 82
Query: 149 ----ISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAE---LG 201
+ + V+Q+ L+ S ++ A A
Sbjct: 83 TLASLRNQVALVSQNVHLFNDTVANNIAYA-----RTEEYSREQIEEAARMAYAMDFINK 137
Query: 202 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLG 261
+ +TIIG +SGG+R+R++IA +L + +LILDE TS LD+ + + + L
Sbjct: 138 MDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 196
Query: 262 SLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L Q+ +T + H+ S + D+++V+ +G + G SE ++
Sbjct: 197 EL-QKNRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 123 bits (310), Expect = 1e-32
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 29/231 (12%)
Query: 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NN 143
+ E T L ++G V GEIL ++GP+G+GKST+L +AG G+I
Sbjct: 9 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEA 64
Query: 144 KPTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLT 203
++ +++Q V L K +T + V L L
Sbjct: 65 WSATKLALHRAYLSQQQTPPFATPVWHYLTLH--------QHDKTRTELLNDVAGALALD 116
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEML-------INPSLLILDEPTSGLDSTAAYRL 256
+SGGE +RV +A +L LL+LDEP + LD L
Sbjct: 117 DKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 171
Query: 257 VSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
L +L Q+G IV S H + + + +L G+ L G+ E ++
Sbjct: 172 DKILSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 121 bits (304), Expect = 1e-31
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 14/221 (6%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILTN-NNK 144
+ LN ++ V G+I ++G SG+GKST++ + G + G LT +
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 75
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
++ G + Q L TV + L E +++ +GL
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDEVKRRVTELLSLVGLGD 132
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+S+ +SGG+++RV+IA + NP +L+ DE TS LD ++ L +
Sbjct: 133 KH-----DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDIN 187
Query: 265 QR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+R G TI+ H+ V ++ D V V+S G + SE
Sbjct: 188 RRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSE 227
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 120 bits (301), Expect = 1e-31
Identities = 36/205 (17%), Positives = 88/205 (42%), Gaps = 21/205 (10%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
++ +L IT + G ++ GP+G GK+T+L ++ L + N P +
Sbjct: 13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP----LKGEIIYNGVPITKV 68
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+ F+ ++ I+ ++V + L + K + + + + +
Sbjct: 69 KGKIFFLPEEIIVPRKISVEDYLKA-----VASLYGVKVNKNEIMDALESVEVLDLKK-- 121
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGK 268
+ +S G +RV +A +L+N + +LD+P +D + ++++ ++ ++ ++G
Sbjct: 122 ----KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 177
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSE 293
I++S + S D L +
Sbjct: 178 VIISSREELS-----YCDVNENLHK 197
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (299), Expect = 7e-31
Identities = 52/222 (23%), Positives = 110/222 (49%), Gaps = 15/222 (6%)
Query: 89 QERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNK 144
+ +L G+T + PGE+ A++GP+GSGKST+ +L L+Q G G +L +
Sbjct: 25 PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ-NLYQPTG--GQLLLDGKPLPQY 81
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-GLT 203
+++ ++ V Q+ ++ +++E + + L T+ ++ + + GL
Sbjct: 82 EHRYLHRQVAAVGQEPQVFGR-SLQENIAYG--LTQKPTMEEITAAAVKSGAHSFISGLP 138
Query: 204 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ +T + + + +SGG+R+ V++A ++ P +LILD+ TS LD+ + ++ L
Sbjct: 139 QGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 197
Query: 264 VQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
+R ++++ S + + D +L L G G +
Sbjct: 198 PERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQ 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 117 bits (294), Expect = 3e-30
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 17/224 (7%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNKP 145
IL I+ P I+A GPSG GKST+ ++L G I + +N
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNIS 70
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
++ + GFV+QD + T+RE L + L + ++ + + A +
Sbjct: 71 LENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 206 ENTIIGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSL 263
+ + RG ISGG+R+R++IA L NP +L+LDE T+ LDS + + L SL
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 264 VQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+G+T + H+ S DK+ + +G+ GK +E ++
Sbjct: 186 -MKGRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 114 bits (287), Expect = 2e-29
Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 14/222 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN----NNKP 145
IL+ I + GE++ I+G SGSGKST+ ++ + G +L +
Sbjct: 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN---GQVLIDGHDLALAD 71
Query: 146 TKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKC 205
+ ++ G V QD++L + ++ + + ++ + + +
Sbjct: 72 PNWLRRQVGVVLQDNVL-LNRSIIDNISLA---NPGMSVEKVIYAAKLAGAHDFISELRE 127
Query: 206 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQ 265
I G+SGG+R+R++IA ++ NP +LI DE TS LD + + ++ + +
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-C 186
Query: 266 RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307
+G+T++ H+ S + D+++V+ +G+ + GK E +S
Sbjct: 187 KGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 114 bits (286), Expect = 3e-29
Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHG---LTGTILT--NNNK 144
E T + ++ V GE + +LGPSG GK+T L ++AG G + ++
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 145 PTKHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTK 204
+ V Q LYPH+TV + + F L R + +E V LGLT+
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGLTE 131
Query: 205 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV 264
+ N R +SGG+R+RV++ ++ P + ++DEP S LD+ R+ + L L
Sbjct: 132 -----LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 265 QR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
++ G T + H M D++ V++ G G E
Sbjct: 187 RQLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPDE 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 111 bits (280), Expect = 1e-28
Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHI 149
E + I + GE + +GPSG GKST+L ++AG L I T
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPA 70
Query: 150 SKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTI 209
+ G V Q LYPHL+V E + F L + V L L
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGA---KKEVINQRVNQVAEVLQLAH----- 122
Query: 210 IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GK 268
+ + + +SGG+R+RV+I ++ PS+ +LDEP S LD+ ++ + L +R G+
Sbjct: 123 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 269 TIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
T++ H + DK++VL GR GK E
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPLE 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 105 bits (264), Expect = 3e-26
Identities = 70/256 (27%), Positives = 116/256 (45%), Gaps = 36/256 (14%)
Query: 54 RIKIENKSKEGSSFRRIFNRGSTSSTDDQGSTAKIQERTILNGITGMVSPGEILAILGPS 113
RI ++N SK +F +G L+ + + GE ILGPS
Sbjct: 3 RIIVKNVSK-------VFKKGKV---------------VALDNVNINIENGERFGILGPS 40
Query: 114 GSGKSTMLNVLAGRLHQGHG---LTGTILTNNNKPTKHISKR-TGFVTQDDILYPHLTVR 169
G+GK+T + ++AG G ++ +N K R G V Q LYP+LT
Sbjct: 41 GAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF 100
Query: 170 ETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIA 229
E + F +S +E E V L + N F R +SG +++RV++A
Sbjct: 101 ENIAFPLTN---MKMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQQRVALA 152
Query: 230 HEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSSRVYQMFDKV 288
++ +PSLL+LDEP S LD+ + + + + G T++ H P+ ++ + D+V
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRV 211
Query: 289 LVLSEGRCLYFGKGSE 304
VL +G+ + GK +
Sbjct: 212 GVLVKGKLVQVGKPED 227
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 104 bits (260), Expect = 7e-26
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 14/212 (6%)
Query: 94 LNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRT 153
L+ ++ V GE ILGP+G+GK+ L ++AG H + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVTDLSPEKHDI 74
Query: 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNS 213
FV Q+ L+PH+ V++ L F + + +L + +
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFG------MRMKKIKDPKRVLDTARDLKIEHLL-----DR 123
Query: 214 FIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVT 272
+SGGE++RV++A ++ NP +L+LDEP S LD L L ++ T++
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183
Query: 273 SMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSE 304
H + M D++ V+ +G+ + GK E
Sbjct: 184 ITHDQTE-ARIMADRIAVVMDGKLIQVGKPEE 214
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 96.6 bits (240), Expect = 4e-23
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 17/205 (8%)
Query: 103 PGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKR--TGFVTQDD 160
+ +LGP+G+GKS L ++AG + G + N T +R GFV QD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDR---GEVRLNGADITPLPPERRGIGFVPQDY 79
Query: 161 ILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISG 220
L+PHL+V + + R + E+ + +LG+ + + +SG
Sbjct: 80 ALFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAH-----LLDRKPARLSG 129
Query: 221 GERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQPSS 279
GER+RV++A ++I P LL+LDEP S +D L+ L + + I+ H
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 280 RVYQMFDKVLVLSEGRCLYFGKGSE 304
+ D+V V+ GR + GK E
Sbjct: 190 -AAMLADEVAVMLNGRIVEKGKLKE 213
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 56.2 bits (134), Expect = 1e-09
Identities = 23/196 (11%), Positives = 50/196 (25%), Gaps = 35/196 (17%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL 166
+ I G G GK+T++ + RL KR +++ P
Sbjct: 3 IIITGEPGVGKTTLVKKIVERL---------------------GKRAIGFWTEEVRDPET 41
Query: 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRV 226
R + + S+K TS + + E
Sbjct: 42 KKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE-----------ELAIPILER 90
Query: 227 SIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFD 286
+ ++I+DE + + +V ++ V+ +
Sbjct: 91 AYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVK 147
Query: 287 KVLVLSEGRCLYFGKG 302
++ L +
Sbjct: 148 EIRRLPGAVLIELTPE 163
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 0.002
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLH 129
IL+ IT + ++AI+G +GKS ++N LAG+
Sbjct: 24 ILSAITQPMV---VVAIVGLYRTGKSYLMNKLAGKKK 57
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 18/150 (12%), Positives = 42/150 (28%), Gaps = 2/150 (1%)
Query: 106 ILAILGPSGSGKSTMLNVLAGRLH-QGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164
+ + GP G GK+T+++ + L G + G + + I ++
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 165 HLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIG-NSFIRGISGGER 223
+ + + +A V+ + + I + +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQ 122
Query: 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAA 253
+ + L P +IL A
Sbjct: 123 LFIQAVRQTLSTPGTIILGTIPVPKGKPLA 152
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.2 bits (85), Expect = 0.002
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 104 GEILAILGPSGSGKSTMLNVLAGRLH 129
G IL + G GSGKST+ LA
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPG 29
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.2 bits (85), Expect = 0.003
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPH 165
I+ ++G GSGK T + + H TG +L K + + L P
Sbjct: 10 IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPL 69
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Score = 36.9 bits (84), Expect = 0.003
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHL 166
+ I G G+GK++M ++A L L L N ++ L
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRL 67
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.004
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 106 ILAILGPSGSGKSTMLNVLAGRLHQ 130
+LA SG+GK+T+L L L
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCA 28
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (86), Expect = 0.004
Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 87 KIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT 146
+ +L+ I L + G G+GKST L G L GL ++ +
Sbjct: 37 QALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAF-GMLLIREGLKVAVIAVD---- 91
Query: 147 KHISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTK-EKTSIAEAVMAELGLTKC 205
S TG D + R F + L ++ + G
Sbjct: 92 -PSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVV 150
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 679 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.61 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.53 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.11 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.85 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.81 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.02 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.93 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.46 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.17 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.13 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.99 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.99 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.92 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.9 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.77 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.71 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.63 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.59 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.57 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.48 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.43 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.38 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.34 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.34 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.33 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.22 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.19 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.13 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.09 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.05 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.04 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.98 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.95 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.92 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.85 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.84 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.82 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.78 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.77 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.72 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.67 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.65 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.65 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.57 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.54 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.52 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.52 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.48 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.47 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.45 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.45 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.44 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.41 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.41 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.39 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.39 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.29 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.27 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.26 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.25 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.19 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.1 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.09 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.05 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.99 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.98 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.92 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.92 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.89 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.87 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.85 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.77 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.74 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.74 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.66 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.66 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.61 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.61 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.6 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.49 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.49 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.44 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.42 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.39 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.37 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.32 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.27 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.26 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.26 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.19 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.18 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.88 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.86 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.84 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.82 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.81 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.72 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.65 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.65 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.64 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.63 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.62 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.62 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.5 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.45 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.43 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.41 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.37 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.27 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.25 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.22 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.14 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.14 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.04 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.99 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.96 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.84 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.84 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.83 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.77 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.77 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.74 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.72 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.68 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.65 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.56 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.55 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.5 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.5 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.48 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.46 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.44 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.4 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.34 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.29 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.25 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.13 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.07 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.06 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.03 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.01 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.94 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.92 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.91 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.91 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.71 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.62 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.62 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.43 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.39 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.39 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.33 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.25 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.25 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.23 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.13 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.12 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.04 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.89 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.84 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.82 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.66 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.65 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.59 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.59 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.58 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.52 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.36 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.1 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.92 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.88 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.84 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.82 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.45 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.39 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.22 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.12 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.97 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.76 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.67 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.55 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.22 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.73 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.42 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.33 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.97 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.89 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.73 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.23 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.83 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.83 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.29 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.07 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.94 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 84.91 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.8 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.34 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.42 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.72 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 80.84 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.56 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 80.26 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.14 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.2e-54 Score=434.52 Aligned_cols=214 Identities=27% Similarity=0.429 Sum_probs=185.8
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEec
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQ 158 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q 158 (679)
.++++++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|++... ..+|++|||||
T Consensus 9 v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~~~~~r~ig~v~Q 85 (239)
T d1v43a3 9 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQ 85 (239)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC---CCCEEEEcceecccCCcccceEEEEee
Confidence 34455567778999999999999999999999999999999999999987 48999999987643 34678999999
Q ss_pred CCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCe
Q 005754 159 DDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 238 (679)
Q Consensus 159 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~l 238 (679)
++.+||.+||+||+.|....+ ..++++.+++++++++.+||++.+| +++++|||||||||+|||||+.+|++
T Consensus 86 ~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGq~QRvaiAraL~~~P~i 157 (239)
T d1v43a3 86 SYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN-----RYPAQLSGGQRQRVAVARAIVVEPDV 157 (239)
T ss_dssp ------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTT-----SCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred chhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHhhhccCCCc
Confidence 999999999999999876543 4578888999999999999988655 45678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 239 LILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 239 llLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||||+|||+.++.++++.|++++++ |+|||++|||+. ++.++|||+++|++|++++.|+++++.
T Consensus 158 LllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 158 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999765 999999999965 689999999999999999999999974
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.4e-54 Score=432.06 Aligned_cols=214 Identities=29% Similarity=0.451 Sum_probs=157.3
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQD 159 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~ 159 (679)
++++++|+++++|+||||+|++||+++|+||||||||||||+|+|+.+| .+|+|.++|++... ..+|.+|||||+
T Consensus 4 ~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 4 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEEECCEECCCCchhhceeeeeccc
Confidence 3455667788999999999999999999999999999999999999987 48999999988643 346789999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+++.+||+||+.|+...+ ..++++.+++++++++.++|.+..|+ +++.|||||||||+|||||+.+|++|
T Consensus 81 ~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~-----~~~~LSGGqkQRvaiAraL~~~P~il 152 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAIGRTLVAEPSVF 152 (232)
T ss_dssp CCC------------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEE
T ss_pred cccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999986543 34566778899999999999987665 45679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||||+|||+.++.++++.|+++.+ .|+|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus 153 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 153 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999965 5999999999964 6899999999999999999999999854
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.5e-53 Score=427.57 Aligned_cols=213 Identities=29% Similarity=0.436 Sum_probs=191.1
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--------cccCcE
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--------HISKRT 153 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--------~~~~~i 153 (679)
++++++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|.+... ..++.+
T Consensus 7 ~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p---~sG~I~~~g~~i~~~~~~~~~~~~~r~i 83 (240)
T d1g2912 7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVADPEKGIFVPPKDRDI 83 (240)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEEEGGGTEECCGGGSSE
T ss_pred EeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC---CCCEEEECCEEecccchhhhcccccccc
Confidence 3445556678899999999999999999999999999999999999987 48999999976521 125689
Q ss_pred EEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHh
Q 005754 154 GFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 233 (679)
Q Consensus 154 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~ 233 (679)
|||||++.++|.+||+||+.+....+ ..++++.+++++++++.+||++.+| +++++|||||||||+|||||+
T Consensus 84 g~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~-----~~p~~LSGGqkQRv~IAraL~ 155 (240)
T d1g2912 84 AMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLN-----RKPRELSGGQRQRVALGRAIV 155 (240)
T ss_dssp EEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTT-----CCGGGSCHHHHHHHHHHHHHH
T ss_pred eecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987765 3577888999999999999988665 456689999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 234 INPSLLILDEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 234 ~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
.+|++|||||||+|||+.++..+++.|+++.++ |.|||++|||+. ++.++||||++|++|++++.|+++++.
T Consensus 156 ~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999765 999999999965 689999999999999999999999875
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.4e-53 Score=427.34 Aligned_cols=206 Identities=30% Similarity=0.471 Sum_probs=185.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDIL 162 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l 162 (679)
+..+|+||||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|++... ..+|++|||||++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p---~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC---CCceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 46799999999999999999999999999999999999987 48999999987532 235689999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+|.+||+||+.|+...+ ..++++.+++++++++.+||++..| +++++|||||||||+|||||+++|++||||
T Consensus 94 ~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~-----~~p~~LSGGqkQRvaiARaL~~~P~llllD 165 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLD 165 (242)
T ss_dssp CTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhh-----CChhhCCHHHHhHHHHHhHHhhcccceeec
Confidence 99999999999986543 4578888899999999999987655 456689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||+|||+.++.++++.|+++.++ |.|||++|||+. ++.++|||+++|++|++++.|+++++.+
T Consensus 166 EPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 166 EPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp STTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999765 999999999965 6899999999999999999999999754
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-52 Score=420.99 Aligned_cols=203 Identities=27% Similarity=0.392 Sum_probs=183.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------cccCcEEEEecCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-------HISKRTGFVTQDDILY 163 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-------~~~~~i~yv~Q~~~l~ 163 (679)
.++|+||||+|++||+++|+||||||||||+++|+|+.+| .+|+|.++|++... .+|+++|||||++.++
T Consensus 18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p---~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~ 94 (240)
T d3dhwc1 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 94 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC---SEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCC
T ss_pred EEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc---cCCceEEcCeEeeeCChhhhhhhhccccccccccccC
Confidence 3689999999999999999999999999999999999987 48999999987531 2456899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
+.+||+||+.++...+ ..++++.+++++++|+.+||.+.+| +++++|||||||||+|||||+.+|++|||||
T Consensus 95 ~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~-----~~~~~LSGG~~QRvaiAraL~~~P~lLllDE 166 (240)
T d3dhwc1 95 SSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDE 166 (240)
T ss_dssp TTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTS-----SCBSCCCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred CCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHhhhhccCCCeEEecc
Confidence 9999999999987653 3456777889999999999998665 4566899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
||+|||+.++.++++.|+++.++ |.|||++|||+. ++.++|||+++|++|++++.|+++++
T Consensus 167 Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 167 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp GGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred ccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999876 999999999965 68899999999999999999999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.1e-52 Score=418.58 Aligned_cols=209 Identities=27% Similarity=0.431 Sum_probs=184.4
Q ss_pred CCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecC
Q 005754 82 QGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQD 159 (679)
Q Consensus 82 ~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~ 159 (679)
++++++|++ .+|+||||+|++||+++|+||||||||||+|+|+|+.+| .+|+|.++|++... ..++.+|||||+
T Consensus 5 ~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p---~sG~I~~~G~~i~~~~~~~r~ig~v~Q~ 80 (229)
T d3d31a2 5 ESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (229)
T ss_dssp EEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCCEEEEccEeccccchhHhcceeeccc
Confidence 344555654 489999999999999999999999999999999999987 48999999988643 345689999999
Q ss_pred CCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 160 DILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 160 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
+.+||.+||+||+.|+...+.. . ..++++++++.++|.+..|.. +.+|||||||||+|||||+++|++|
T Consensus 81 ~~l~~~~tV~enl~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~-----~~~LSGG~~QRvaiAraL~~~P~iL 149 (229)
T d3d31a2 81 YSLFPHMNVKKNLEFGMRMKKI---K---DPKRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVALARALVTNPKIL 149 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCC---C---CHHHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred cccCccccHHHHHHHHHhhccc---c---HHHHHHHHHHHhcchhhHhCC-----hhhCCHHHhcchhhhhhhhccCCce
Confidence 9999999999999998776532 1 134688899999999877654 5579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||||||+|||+.++.++.+.|+++.+ .|.|||++||++. ++.++||||++|++|++++.|+++++.
T Consensus 150 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred eecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999975 5999999999965 689999999999999999999999974
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-51 Score=413.27 Aligned_cols=203 Identities=29% Similarity=0.426 Sum_probs=179.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----c---c-cCcEEEEecCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----H---I-SKRTGFVTQDDIL 162 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~---~-~~~i~yv~Q~~~l 162 (679)
..+|+||||+|++||+++|+|||||||||||++|+|+.+| .+|+|.++|.+... + + ++.+|||||++.+
T Consensus 18 ~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p---~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l 94 (230)
T d1l2ta_ 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (230)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC---CcceeEECCEEcCcCChhhcchhhcceEEEEecchhh
Confidence 4589999999999999999999999999999999999986 48999999987532 1 2 3469999999999
Q ss_pred CCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 163 YPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 163 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
+|.+||+||+.++...+.....+.++..+++.++|+.++|.+. ..++++.+|||||||||+|||||+++|++||||
T Consensus 95 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllD 170 (230)
T d1l2ta_ 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (230)
T ss_dssp CTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG----GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh----hhcCChhhCCHHHHHHHHHHhhhhcCCCEEEec
Confidence 9999999999998876554456778888899999999999752 224566789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecCh
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKG 302 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~ 302 (679)
|||+|||+.++.++++.|+++.++ |+|||++|||+. . .++|||+++|++|++++.|++
T Consensus 171 EPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEEEC
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-H-HHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999765 999999999964 3 489999999999999999865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.9e-51 Score=413.20 Aligned_cols=230 Identities=25% Similarity=0.383 Sum_probs=203.2
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc---cccCcEEEEe
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK---HISKRTGFVT 157 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~---~~~~~i~yv~ 157 (679)
.++++|+|++++||+||||+|++||++||+||||||||||+|+|+|+++| .+|+|.++|++..+ ..++.+||||
T Consensus 5 v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p---~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 5 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECcEecccChHHHHhhEeEee
Confidence 34567778889999999999999999999999999999999999999987 48999999987533 4578899999
Q ss_pred cCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCC
Q 005754 158 QDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 237 (679)
Q Consensus 158 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ 237 (679)
|++.+++++||.||+.|...++ ..++.+..++++++++.++|.+..+.+++ .||||||||++|||||+++|+
T Consensus 82 q~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~ 153 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPR 153 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCS
T ss_pred eccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999977665 24567778889999999999987776554 699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHHHHHHcCCCCC
Q 005754 238 LLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMSYFESVGFSPS 317 (679)
Q Consensus 238 lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~~ 317 (679)
+|||||||+|||+.++.++.++|++++++|+|||++||++. ++..+||||++|++|++++.|+++++.+.+.
T Consensus 154 illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~~~~~------- 225 (238)
T d1vpla_ 154 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKERYK------- 225 (238)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHHHTT-------
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHhccC-------
Confidence 99999999999999999999999999999999999999965 6899999999999999999999999977542
Q ss_pred CCCChHHHHHHHh
Q 005754 318 FPMNPADFLLDLA 330 (679)
Q Consensus 318 ~~~n~ad~~~~~~ 330 (679)
..|..+.+.+++
T Consensus 226 -~~~~~~~f~~~~ 237 (238)
T d1vpla_ 226 -AQNIEEVFEEVV 237 (238)
T ss_dssp -CSSHHHHHHHHH
T ss_pred -CchHHHHHHHhh
Confidence 245666666553
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.8e-51 Score=418.53 Aligned_cols=217 Identities=26% Similarity=0.396 Sum_probs=190.9
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-------------
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK------------- 147 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~------------- 147 (679)
.++++++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|++...
T Consensus 5 v~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 5 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC---CCCCEEECCEEeccCCccchhcccccH
Confidence 44556667778899999999999999999999999999999999999986 48999999987521
Q ss_pred ----cccCcEEEEecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHH
Q 005754 148 ----HISKRTGFVTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGER 223 (679)
Q Consensus 148 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 223 (679)
..++++|||||++.+++.+||.||+.++.... ...++++.++++.++++.++|.+.. .++++.+||||||
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~p~~LSGG~~ 155 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERA----QGKYPVHLSGGQQ 155 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHH----HTSCGGGSCHHHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhh----hccCcccccHHHH
Confidence 23567999999999999999999999864322 2356788889999999999997632 1345678999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChh
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGS 303 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~ 303 (679)
|||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++|||+. ++.++||||++|++|++++.|+++
T Consensus 156 QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~G~iv~~g~~~ 234 (258)
T d1b0ua_ 156 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPE 234 (258)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999999999999999965 689999999999999999999999
Q ss_pred hHHH
Q 005754 304 EAMS 307 (679)
Q Consensus 304 ~~~~ 307 (679)
++..
T Consensus 235 ev~~ 238 (258)
T d1b0ua_ 235 QVFG 238 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9743
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1e-50 Score=411.64 Aligned_cols=213 Identities=24% Similarity=0.365 Sum_probs=183.1
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEE
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGF 155 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~y 155 (679)
.+++++.|+++.+|+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.++|++... ..+..++|
T Consensus 9 v~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~r~gi~~ 85 (240)
T d1ji0a_ 9 VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred EeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEecccccccccHHHHHHhcccc
Confidence 34455566778899999999999999999999999999999999999986 48999999987542 12446999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCccCcccCHHHHHHHHHHHHHhh
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 234 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~ 234 (679)
+||+..+|+.+||+||+.+....+. .++..++.++++++.+ +|.+..+++ +++|||||||||+|||||+.
T Consensus 86 ~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 86 VPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHHHHHHHHHHHTT
T ss_pred cCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCc-----hhhCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988664332 2233445566777766 677766654 45799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
+|++|||||||+|||+.++.++++.|++++++|+|||++||+.. ++.++|||+++|++|++++.|+++++.
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999999999999999965 689999999999999999999999874
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.7e-50 Score=413.67 Aligned_cols=218 Identities=25% Similarity=0.364 Sum_probs=189.0
Q ss_pred CCCccccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc-----cccCcEEE
Q 005754 81 DQGSTAKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK-----HISKRTGF 155 (679)
Q Consensus 81 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~-----~~~~~i~y 155 (679)
.++++++|+++++|+||||++++||+++|+||||||||||+|+|+|+++| .+|+|.++|++... ..++.++|
T Consensus 7 v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~gi~~ 83 (254)
T d1g6ha_ 7 TENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVR 83 (254)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC---CCcEEEECCEeccchhHHHHHHhcCCc
Confidence 34555667788999999999999999999999999999999999999987 48999999987532 23456999
Q ss_pred EecCCCCCCCCCHHHHHHHHhhhcC----------CCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHH
Q 005754 156 VTQDDILYPHLTVRETLVFCSLLRL----------PRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKR 225 (679)
Q Consensus 156 v~Q~~~l~~~lTV~E~l~~~~~~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 225 (679)
+||++.+++.+||.||+.++...+. .....+++..++++++++.+++.+..|++++ .||||||||
T Consensus 84 v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qr 158 (254)
T d1g6ha_ 84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKL 158 (254)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHH
T ss_pred cCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh-----hCCcHHHHH
Confidence 9999999999999999988643221 1112345566788999999999987776554 699999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhH
Q 005754 226 VSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEA 305 (679)
Q Consensus 226 v~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~ 305 (679)
|+|||||+.+|++|||||||+|||+.++.++.+.|++++++|+|||++||+.. ++.++||||++|++|++++.|+++|.
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~G~iv~~g~~~e~ 237 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEEE 237 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHHH
T ss_pred HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeCCEEEEEecHHHH
Confidence 99999999999999999999999999999999999999989999999999976 58899999999999999999999886
Q ss_pred HH
Q 005754 306 MS 307 (679)
Q Consensus 306 ~~ 307 (679)
.+
T Consensus 238 ~~ 239 (254)
T d1g6ha_ 238 IK 239 (254)
T ss_dssp HH
T ss_pred hh
Confidence 44
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=7.2e-50 Score=402.07 Aligned_cols=204 Identities=27% Similarity=0.430 Sum_probs=181.7
Q ss_pred ccccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc--cccCcEEEEecCCCCC
Q 005754 86 AKIQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK--HISKRTGFVTQDDILY 163 (679)
Q Consensus 86 ~~~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~--~~~~~i~yv~Q~~~l~ 163 (679)
|++++..+ ||||+++ ||+++|+||||||||||+|+|+|+++| .+|+|.++|++... ..++++|||||++.++
T Consensus 9 k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~ 82 (240)
T d2onka1 9 KRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEECCcCCHHHcCceeeccchhhc
Confidence 45555544 8999995 689999999999999999999999987 48999999987643 3467899999999999
Q ss_pred CCCCHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeC
Q 005754 164 PHLTVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 243 (679)
Q Consensus 164 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDE 243 (679)
|.+||+||+.|+.. ..++.+.+++++++++.+||.+..+. ++++|||||||||+|||||+.+|++|||||
T Consensus 83 ~~ltV~enl~~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~-----~~~~LSGG~kQRvaiAral~~~P~illlDE 152 (240)
T d2onka1 83 PHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp TTSCHHHHHHTTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTC-----CGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred ccchhhHhhhhhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhC-----ChhhCCHHHHHHHHHHHHHhccCCceEecC
Confidence 99999999998642 34677888899999999999986654 566899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 244 PTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 244 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
||+|||+.++..+.+.|++++++ |.|||++|||+. ++.++|||+++|++|++++.|+++++.
T Consensus 153 Pts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 99999999999999999999765 999999999965 689999999999999999999999985
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-48 Score=392.23 Aligned_cols=205 Identities=28% Similarity=0.477 Sum_probs=169.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCC
Q 005754 90 ERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPH 165 (679)
Q Consensus 90 ~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~ 165 (679)
.+.+|+||||+|++||.+||+||||||||||+++|+|+++| .+|+|.+||.+... .+++.++||+|++.+|+
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~- 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN- 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC---CCCEEEECCEEecccchhhhhceEEEEecccccCC-
Confidence 35699999999999999999999999999999999999986 48999999987642 46788999999999886
Q ss_pred CCHHHHHHHHhhhcCCCCCCHHHHHHHHH--HHHHHc-CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEe
Q 005754 166 LTVRETLVFCSLLRLPRTLSTKEKTSIAE--AVMAEL-GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 242 (679)
Q Consensus 166 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLD 242 (679)
.||+||+.++. ...+.++..+..+ .+.+.+ .+....++.++. .+..|||||||||+|||||+++|+|||||
T Consensus 91 ~Ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~-~g~~LSGGq~QRvalARal~~~p~ililD 164 (241)
T d2pmka1 91 RSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKILIFD 164 (241)
T ss_dssp SBHHHHHCTTS-----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred ccccccccccC-----ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCC-CCCccCHHHHHHHhhhhhhhcccchhhhh
Confidence 59999998742 1223333222211 111222 334556777764 46789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 243 EPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 243 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
||||+||+.++..+++.|+++.+ |+|+|++||++. ..+.||||++|++|++++.|+++++++
T Consensus 165 Epts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 165 EATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999865 899999999985 357899999999999999999999854
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9e-48 Score=392.38 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=171.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.+||.+... .++++++||+|++.+|+ .
T Consensus 27 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 102 (251)
T d1jj7a_ 27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP---TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-R 102 (251)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred CEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC---CcCEEEECCEecchhhhHHHHHHhhhccccccccC-c
Confidence 5699999999999999999999999999999999999987 48999999987643 46788999999999986 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSI-----AEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
||+||+.++... .....+..+. ..+.++ +|.+..++.++ +.+..|||||||||+|||||+++|+||||
T Consensus 103 tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~-~~~~~LSGGqkQRvaiARal~~~p~ilil 175 (251)
T d1jj7a_ 103 SLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLIL 175 (251)
T ss_dssp BHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCC-SSCSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred chhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHh-ccCccCChhHceEEEEeeccccCCcEEEe
Confidence 999999875321 1122222111 122233 45556677776 45778999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+||+.++..+++.|+++.++ |+|||++||++. ..+.||||++|++|++++.|+++++++
T Consensus 176 DEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp ESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999998764 899999999974 457899999999999999999999865
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.8e-48 Score=393.07 Aligned_cols=201 Identities=31% Similarity=0.452 Sum_probs=169.2
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCcc----ccccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPT----KHISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~----~~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.+.. +.+++++|||+|++.+|+.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc-
Confidence 56999999999999999999999999999999999999874 899999998753 3567889999999999986
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHc-------CCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAEL-------GLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+||+.+... ...+..+.. +.++.. .+.+..++.+++ .+..|||||||||+|||||+.+|+||
T Consensus 91 ti~eNi~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~LSGGqkQRv~iARal~~~p~il 161 (242)
T d1mv5a_ 91 TIRENLTYGLE----GDYTDEDLW----QVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKIL 161 (242)
T ss_dssp EHHHHTTSCTT----SCSCHHHHH----HHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred chhhheecccc----cccchhhHH----HHHHHHHhhhhhccCcccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999976432 122333322 223332 334456677764 46679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||||+||+.++..+++.|++++ +|+|||++||++. ....||||++|++|++++.|+++++++
T Consensus 162 ilDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred EecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999997 4899999999974 346799999999999999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.8e-47 Score=385.10 Aligned_cols=203 Identities=27% Similarity=0.410 Sum_probs=169.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+++|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.+||.+... .+++.++||+|++.+++.
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~- 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND- 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-
T ss_pred CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC---CccEEEECCcccchhhhhhhhheEEEEeeccccCCc-
Confidence 4699999999999999999999999999999999999987 48999999987542 467789999999998864
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIA-----EAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 241 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllL 241 (679)
|+++|+.++.. ...+.++..+.. .+.++. +.+..++.+++ .+..|||||||||+|||||+++|+||+|
T Consensus 104 ti~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~--l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~~~p~ilil 176 (253)
T d3b60a1 104 TVANNIAYART----EEYSREQIEEAARMAYAMDFINK--MDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILIL 176 (253)
T ss_dssp BHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHH--STTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred chhhhhhhcCc----ccCCHHHHHHHHHHHhHHHHHHh--ccccchhhhcC-CCCCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 99999987521 223333322211 122222 23445677764 5778999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 242 DEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 242 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|||||+||+.++..+++.|+++.+ ++|+|++||++. ..+.||+|++|++|+|++.|+++++++
T Consensus 177 DEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 177 DEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp ETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999965 899999999975 347899999999999999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.7e-46 Score=382.99 Aligned_cols=200 Identities=31% Similarity=0.467 Sum_probs=171.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCC
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHL 166 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~l 166 (679)
+.+|+||||+|++||++||+||||||||||+++|+|+++| .+|+|.++|.+... .+|+.++||+|++.+|+ .
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-D 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-S
T ss_pred CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc---cccccccCCEEcccCCHHHhhheeeeeeccccCCC-C
Confidence 5699999999999999999999999999999999999986 48999999987543 56789999999999886 5
Q ss_pred CHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeE
Q 005754 167 TVRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 239 (679)
Q Consensus 167 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~ll 239 (679)
||+|||.++. + ..+.++ +.++++..+ |.+..++.+++ .+..||||||||++|||||+++|+||
T Consensus 107 Ti~eNi~~g~----~-~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~il 176 (255)
T d2hyda1 107 TVKENILLGR----P-TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPIL 176 (255)
T ss_dssp BHHHHHGGGC----S-SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred CHHHHHhccC----c-CCCHHH----HHHHHHHhCCHHHHHhccccccchhcC-CCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998752 1 123333 333444443 44566788875 46679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 240 ILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 240 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
+||||||+||+.++..+++.|+++.+ ++|+|++||++. ..+.||||++|++|++++.|+++++++
T Consensus 177 ilDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 177 ILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999865 899999999986 357899999999999999999999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-43 Score=357.24 Aligned_cols=197 Identities=29% Similarity=0.406 Sum_probs=170.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccc----cccCcEEEEecCCCCCCCCC
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTK----HISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~----~~~~~i~yv~Q~~~l~~~lT 167 (679)
.+|+||||+|++||++||+||||||||||+|+|+|+.+ .+|+|.++|++... ..++..+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~----~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC----CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC----CceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 46999999999999999999999999999999999753 36999999987533 34456899999987766789
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhh-------CCCeEE
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI-------NPSLLI 240 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~-------~P~lll 240 (679)
+.+++.+...- +...++++++++.+++.+..++. ++.|||||||||+|||+|++ +|+|||
T Consensus 89 v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~-----~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~lll 155 (231)
T d1l7vc_ 89 VWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 155 (231)
T ss_dssp HHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSB-----GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred HHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcC-----hhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEE
Confidence 99998875321 12345678899999998876654 45799999999999999997 779999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHH
Q 005754 241 LDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAM 306 (679)
Q Consensus 241 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~ 306 (679)
|||||+|||+.++..+.++|++++++|+|||++||++. ++.++|||+++|++|++++.|+++++.
T Consensus 156 lDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 156 LDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp ESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999965 589999999999999999999998873
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-43 Score=365.99 Aligned_cols=198 Identities=27% Similarity=0.412 Sum_probs=162.5
Q ss_pred ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCC
Q 005754 88 IQERTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLT 167 (679)
Q Consensus 88 ~~~~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lT 167 (679)
+.+++||+||||+|++||++||+||||||||||+|+|+|+++| .+|+|.++| +++||+|++.+++. |
T Consensus 46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g---------~i~~v~Q~~~l~~~-t 112 (281)
T d1r0wa_ 46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSG---------RVSFCSQFSWIMPG-T 112 (281)
T ss_dssp HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEECCS---------CEEEECSSCCCCSE-E
T ss_pred CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC---CCcEEEECC---------EEEEEeccccccCc-e
Confidence 3567899999999999999999999999999999999999986 489999987 38999999999875 9
Q ss_pred HHHHHHHHhhhcCCCCCCHHHHHHHHHH---HHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 005754 168 VRETLVFCSLLRLPRTLSTKEKTSIAEA---VMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 244 (679)
Q Consensus 168 V~E~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEP 244 (679)
|+||+.|+.. .......+..+. ......+.+..++.++. .+..|||||||||+|||||+++|+|||||||
T Consensus 113 v~eni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEP 185 (281)
T d1r0wa_ 113 IKENIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSP 185 (281)
T ss_dssp HHHHHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESC
T ss_pred eecccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCc
Confidence 9999987532 222222222111 12233555566676663 4667999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecChhhHHH
Q 005754 245 TSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGKGSEAMS 307 (679)
Q Consensus 245 tsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~ 307 (679)
|++||+.++..+++.+.+..++|+|+|++||++. ..+.||||++|++|++++.|+++++.+
T Consensus 186 ts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 186 FGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999865444456899999999963 468899999999999999999999854
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.2e-41 Score=331.46 Aligned_cols=183 Identities=21% Similarity=0.367 Sum_probs=152.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCCCCCHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYPHLTVRE 170 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 170 (679)
++||+||||+|++||+++|+||||||||||+|+|+|+++| .+|+|.+||.+.. ..+.+++|+||+..++..+|++|
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p---~~G~I~~~g~~i~-~~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGG-GGGGGEEEECSSCCCCTTSBHHH
T ss_pred CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc---CCCEEEECCEehh-HhcCcEEEEeecccCCCCcCHHH
Confidence 4699999999999999999999999999999999999987 4899999998764 45678999999999999999999
Q ss_pred HHHHHhhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 005754 171 TLVFCSLLRLPRTLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDS 250 (679)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~ 250 (679)
++.+...++.. ...+ +.+.+.++.+++.+.. . .+++|||||||||+|||+|+.+|+++||||||+|||+
T Consensus 90 ~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~-~-----~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~ 158 (200)
T d1sgwa_ 90 YLKAVASLYGV-KVNK----NEIMDALESVEVLDLK-K-----KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 158 (200)
T ss_dssp HHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTT-S-----BGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred HHHHHHHhcCC-ccCH----HHHHHHHHHcCCcccc-c-----ccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCH
Confidence 99987766532 2222 3355677888876532 2 2447999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEEeCCccHHHHHhCCeEEEEeC
Q 005754 251 TAAYRLVSTLGSLVQR-GKTIVTSMHQPSSRVYQMFDKVLVLSE 293 (679)
Q Consensus 251 ~~~~~i~~~L~~l~~~-g~tii~~tH~~~~~i~~~~D~v~lL~~ 293 (679)
.++..+++.|+++.++ |.+||.++|+. ++||++.+|++
T Consensus 159 ~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 159 DSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp TTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 9999999999998765 45555554442 57999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.53 E-value=7.1e-16 Score=145.92 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=98.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC--CC--CCCCCCHHHHHHHHhhhcCCC
Q 005754 107 LAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD--DI--LYPHLTVRETLVFCSLLRLPR 182 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~--~~--l~~~lTV~E~l~~~~~~~~~~ 182 (679)
++|+||||||||||+++|+|.+++ ..|.+...+...... .++.++..+. .. .....+..+. .+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~---~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGK---RAIGFWTEEVRDPET-KKRTGFRIITTEGKKKIFSSKFFTSK------KLV-- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG---GEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCCS------SEE--
T ss_pred EEEECCCCcHHHHHHHHHHhcCCC---CcceEEECCcchHHH-HHhhhhhhhhhhHHHHHHhhhhhhhh------hhh--
Confidence 789999999999999999999875 367777665443221 1222222111 00 0000000000 000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCccCcccCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 005754 183 TLSTKEKTSIAEAVMAELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGS 262 (679)
Q Consensus 183 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~ 262 (679)
...+. +.....+|+|+++|.++++++..+|+++++|||... ......+.+.|.+
T Consensus 71 ---------------~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~ 124 (178)
T d1ye8a1 71 ---------------GSYGV---------NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQ 124 (178)
T ss_dssp ---------------TTEEE---------CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHH
T ss_pred ---------------hhhhc---------CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHH
Confidence 00000 111224899999999999999999999999998543 3334556666666
Q ss_pred HHh-CCcEEEEEeCCccHHHHHhCCeEEEEeCCeEEEecC
Q 005754 263 LVQ-RGKTIVTSMHQPSSRVYQMFDKVLVLSEGRCLYFGK 301 (679)
Q Consensus 263 l~~-~g~tii~~tH~~~~~i~~~~D~v~lL~~G~iv~~G~ 301 (679)
+.+ .+.++|+++|+.. ....+|++..+.+|+++.-++
T Consensus 125 ~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 125 IMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred HhccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence 544 4899999999964 467889999999999986543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=4.1e-10 Score=115.01 Aligned_cols=77 Identities=25% Similarity=0.299 Sum_probs=65.1
Q ss_pred CcccCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE
Q 005754 215 IRGISGGERKRVSIAHEM----LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL----~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l 290 (679)
...+|+|||+...++..+ ..+|+++++|||-++|+|.....+.+.|++.++ +.-||+|||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 457999999998887654 346789999999999999999999999999875 688999999985 6789999966
Q ss_pred --EeCC
Q 005754 291 --LSEG 294 (679)
Q Consensus 291 --L~~G 294 (679)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4455
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=4e-09 Score=111.77 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=64.6
Q ss_pred CcccCHHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccHHHHHhCCeEEE
Q 005754 215 IRGISGGERKRVSIAHEM----LINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSSRVYQMFDKVLV 290 (679)
Q Consensus 215 ~~~LSgGerqRv~IA~aL----~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~~i~~~~D~v~l 290 (679)
...+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+| .+.+.+|+++.
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEE
Confidence 356899999998887544 356789999999999999999999999999876677899999997 47899999876
Q ss_pred E
Q 005754 291 L 291 (679)
Q Consensus 291 L 291 (679)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.02 E-value=9.9e-06 Score=78.78 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCccHHHHHh
Q 005754 224 KRVSIAHEMLINPSLLILDEPTSGLDSTAAYRLVST-LGSLVQRGKTIVTSMHQPSSRVYQM 284 (679)
Q Consensus 224 qRv~IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tii~~tH~~~~~i~~~ 284 (679)
+|+.-....+.+..++|+||+.+|=|+.....+... ++.|.+.+..++++||.. ++..+
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech--hhhhh
Confidence 333333334456679999999999999888776544 455677788999999984 35444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=1.2e-05 Score=78.81 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=36.8
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CcEEEEEeCCcc
Q 005754 232 MLINPSLLILDEPTSGLDSTAAYRLVST-LGSLVQR-GKTIVTSMHQPS 278 (679)
Q Consensus 232 L~~~P~lllLDEPtsgLD~~~~~~i~~~-L~~l~~~-g~tii~~tH~~~ 278 (679)
-+++..++|+||+.+|=|+.....+... ++.+..+ +..++++||...
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 3445679999999999999999888654 6677654 568899999753
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.46 E-value=0.0002 Score=70.80 Aligned_cols=34 Identities=32% Similarity=0.291 Sum_probs=27.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
-|+++.+=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444443479999999999999999999877764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=9.6e-05 Score=66.80 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=1.2e-05 Score=74.64 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=30.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 93 ILNGITGMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 93 iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+++.++++.+| +++|+|||||||||+|++|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 357788888887 99999999999999999997544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.99 E-value=0.00015 Score=66.02 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=27.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEEC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTN 141 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~ 141 (679)
.+++|+|++|||||||++.|...++..+...|.|..+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d 38 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 38 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3789999999999999998887665433334555443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0012 Score=64.62 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.2
Q ss_pred HHhhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCC
Q 005754 231 EMLINPSLLILDEPTS-----GLDSTAAYRLVSTLGSLVQR-GKTIVTSMHQ 276 (679)
Q Consensus 231 aL~~~P~lllLDEPts-----gLD~~~~~~i~~~L~~l~~~-g~tii~~tH~ 276 (679)
.-..+|+++++|--++ --|......+++.|++++++ |.+||++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457899999995532 12666777888888888764 8898888775
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.92 E-value=0.00017 Score=66.90 Aligned_cols=26 Identities=38% Similarity=0.716 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
|.++.|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.90 E-value=0.00022 Score=64.72 Aligned_cols=26 Identities=46% Similarity=0.606 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.|+++.|.||+||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999865
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.00032 Score=63.42 Aligned_cols=28 Identities=39% Similarity=0.595 Sum_probs=24.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++.++.|+||+||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.71 E-value=0.018 Score=53.77 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=37.0
Q ss_pred hCCCeEEEeCCCCCC----CHHHHHHHH-HHHHHHHhCCcEEEEEeCCccH--------HHHHhCCeEEEEe
Q 005754 234 INPSLLILDEPTSGL----DSTAAYRLV-STLGSLVQRGKTIVTSMHQPSS--------RVYQMFDKVLVLS 292 (679)
Q Consensus 234 ~~P~lllLDEPtsgL----D~~~~~~i~-~~L~~l~~~g~tii~~tH~~~~--------~i~~~~D~v~lL~ 292 (679)
.+|+++++|--+.-. +.......+ ..++.+++.|.|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 478999999765432 333333334 4444445569999999886431 2345788888775
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.63 E-value=0.00041 Score=66.79 Aligned_cols=27 Identities=41% Similarity=0.640 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|+.++++|+||+|||||+|.|.|...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence 588999999999999999999998543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.59 E-value=0.00051 Score=62.08 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++|-++.|+|++||||||+-+.|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999997653
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.57 E-value=0.0095 Score=56.62 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=39.6
Q ss_pred hCCCeEEEeCCCC---CCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCc---------cHHHHHhCCeEEEEe
Q 005754 234 INPSLLILDEPTS---GLDSTAAYRLVSTLGSLV-QRGKTIVTSMHQP---------SSRVYQMFDKVLVLS 292 (679)
Q Consensus 234 ~~P~lllLDEPts---gLD~~~~~~i~~~L~~l~-~~g~tii~~tH~~---------~~~i~~~~D~v~lL~ 292 (679)
.+|++++.|--++ +.+.......+..|.+++ +.+.+++++.|.. ...+..++|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4689999886443 346666566666666655 4689999988742 112456789998885
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.48 E-value=0.00061 Score=61.70 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.++|.||+|||||||.+.|+..+.
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.00045 Score=62.61 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
.+.|.||+|+|||||++.++..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5789999999999999999997754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.00081 Score=63.84 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.|.++.|+||||+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999987654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.34 E-value=0.00083 Score=69.58 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=22.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHh
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~ 125 (679)
+.+.++.+++|+|||||||||+|.+|.
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444555699999999999999999985
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.34 E-value=0.00092 Score=60.31 Aligned_cols=27 Identities=33% Similarity=0.604 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356678999999999999999999754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.33 E-value=0.00093 Score=59.09 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G 126 (679)
+++.|.||+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.33 E-value=0.00082 Score=60.53 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.22 E-value=0.0011 Score=59.25 Aligned_cols=25 Identities=44% Similarity=0.678 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.++.|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.19 E-value=0.00047 Score=66.60 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+|+.++++|+||+|||||+|.|.|..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred ccceEEEECCCCccHHHHHHhhccHh
Confidence 47788999999999999999999854
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.13 E-value=0.0013 Score=59.61 Aligned_cols=25 Identities=20% Similarity=0.423 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++|.|++||||||+.+.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.09 E-value=0.0012 Score=59.15 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.05 E-value=0.0012 Score=61.26 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|.|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999853
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.04 E-value=0.0013 Score=60.46 Aligned_cols=24 Identities=46% Similarity=0.577 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++||-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986553
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.98 E-value=0.13 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+..+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0016 Score=57.41 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|+||+||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999999765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0013 Score=60.51 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.|-++.|+|++||||||+-+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999997653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.85 E-value=0.0019 Score=61.60 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|+|+.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999997543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.0013 Score=60.48 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.0062 Score=58.33 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=30.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
+.+++++||.-. |.......+.+.+.+-. .+..+|++++++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 567999999854 77777777777765432 2456788888865
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0026 Score=58.54 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+=+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999877753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0021 Score=59.58 Aligned_cols=22 Identities=50% Similarity=0.792 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.72 E-value=0.0024 Score=59.15 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..++.|+||+||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998643
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.67 E-value=0.002 Score=58.76 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||+|.|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0028 Score=58.51 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999988643
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.65 E-value=0.0027 Score=57.42 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0025 Score=59.28 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0031 Score=57.19 Aligned_cols=22 Identities=50% Similarity=0.785 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0028 Score=55.78 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999999853
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=0.0029 Score=58.81 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+||||||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.48 E-value=0.0031 Score=57.67 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+||+|++|+|||||+|.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0035 Score=58.11 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.++.|+||+||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999754
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.45 E-value=0.0024 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.+.++.|+||+||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 466789999999999999999998743
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.45 E-value=0.0031 Score=55.61 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
+.|+|++|+|||||++.+.+-
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.44 E-value=0.0023 Score=58.44 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
+||+|.+|+|||||+|.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999885
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0035 Score=58.93 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++||-|++|||||||-+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.41 E-value=0.0024 Score=57.77 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999998743
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.39 E-value=0.0039 Score=56.78 Aligned_cols=23 Identities=48% Similarity=0.652 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++|+|||||+|.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.39 E-value=0.0035 Score=56.50 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.0044 Score=55.12 Aligned_cols=23 Identities=48% Similarity=0.715 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.27 E-value=0.0038 Score=55.37 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.26 E-value=0.0047 Score=56.89 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|-.+.|+||+||||||+-+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 356677899999999999999999543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.25 E-value=0.0031 Score=57.23 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999998764
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.0047 Score=56.98 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998644
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.10 E-value=0.0042 Score=57.25 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.09 E-value=0.0048 Score=56.04 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998754
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.05 E-value=0.0052 Score=55.67 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+|++||||||+-+.||-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999755
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.99 E-value=0.0053 Score=59.29 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
...+.|.||+|||||||.+.|++.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34588999999999999999998654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.0028 Score=57.40 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|+|++++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.92 E-value=0.0064 Score=55.58 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+-+++.++|++||||||+.+-++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998753
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.92 E-value=0.0056 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.89 E-value=0.006 Score=54.95 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+.|+|++||||||+-+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999997653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.87 E-value=0.0035 Score=63.50 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=25.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
++.|.-+.|.||.||||||||++|.+.+++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccc
Confidence 345566899999999999999999998765
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.0057 Score=62.00 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..-.+||.||+|||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999986543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.77 E-value=0.0071 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.74 E-value=0.007 Score=56.81 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+++|.||+||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999755
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.74 E-value=0.0073 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.66 E-value=0.0062 Score=56.15 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3899999999999999999987653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.66 E-value=0.0067 Score=55.49 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+||+|+..||||||+|.|.|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999743
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0081 Score=56.07 Aligned_cols=24 Identities=42% Similarity=0.757 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|.||+||||||+-+.|+..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999997653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.61 E-value=0.0071 Score=56.36 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.60 E-value=0.0026 Score=56.61 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|++|+|||||+|.|.|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999853
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.49 E-value=0.0076 Score=58.79 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999964
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.49 E-value=0.009 Score=56.31 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+=+++|+++.|.||+|+|||||..-++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999999977764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.44 E-value=0.0089 Score=54.44 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+||+||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.42 E-value=0.0081 Score=54.02 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.39 E-value=0.0085 Score=55.09 Aligned_cols=21 Identities=48% Similarity=0.681 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.0089 Score=54.33 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999998644
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.32 E-value=0.011 Score=55.65 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|-++-+.|.||||||||.+.|.-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999998644
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.27 E-value=0.01 Score=59.86 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
..-.++|.||+|||||||++.|...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998643
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.0081 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.26 E-value=0.01 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.726 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|+||.||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.19 E-value=0.01 Score=53.07 Aligned_cols=21 Identities=43% Similarity=0.650 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999988763
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.18 E-value=0.011 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|+||+||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.88 E-value=0.013 Score=55.41 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|.||+|+|||||.++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999999754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.86 E-value=0.018 Score=54.34 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.+++++||+|+||||.+-=|+...
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999876566544
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.84 E-value=0.014 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+.|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999854
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.014 Score=54.96 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++|-+++|-|+.||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.81 E-value=0.014 Score=58.36 Aligned_cols=43 Identities=35% Similarity=0.477 Sum_probs=31.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecCCCCCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQDDILYP 164 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~~~l~~ 164 (679)
++||-|++||||||+-+.|..++.... -...+..+.+|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~----------------~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP----------------EHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST----------------TCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc----------------CCCceEEEeeeeeECC
Confidence 899999999999999999987664210 0123677788877665
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.72 E-value=0.015 Score=54.26 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.65 E-value=0.018 Score=54.05 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+=+++|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3489999999999999999999866654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.65 E-value=0.018 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHh
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~ 125 (679)
=+++|+++.|.||+|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999986443
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.64 E-value=0.015 Score=55.55 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.63 E-value=0.015 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.015 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.62 E-value=0.013 Score=52.76 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.50 E-value=0.015 Score=60.49 Aligned_cols=22 Identities=45% Similarity=0.717 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+||+|.+|+|||||+|.|.|..
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.45 E-value=0.018 Score=53.79 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 005754 106 ILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~ 125 (679)
++||.|+.||||||+.+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.43 E-value=0.017 Score=54.78 Aligned_cols=24 Identities=33% Similarity=0.695 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+.+.||+|+||||+.++|+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 377999999999999999997654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.41 E-value=0.018 Score=54.79 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.016 Score=51.91 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.018 Score=51.95 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998766
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.27 E-value=0.018 Score=54.70 Aligned_cols=23 Identities=43% Similarity=0.775 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+.+.||+|+||||+.+++++...
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.25 E-value=0.019 Score=51.21 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.022 Score=53.89 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=24.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 100 MVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 100 ~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
=+++|+++.|.||+|+|||||.--++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999877764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.02 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|-||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.14 E-value=0.018 Score=57.52 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
|+.-+.+.||+|+|||+|.|+||...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33456789999999999999999864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.04 E-value=0.025 Score=53.24 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=21.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+++++||+|+||||.+-=||.++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45889999999999998877776543
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.023 Score=53.55 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=24.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+|.+++|-|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999987664
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.98 E-value=0.049 Score=49.82 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=27.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
..+|.....+ .|.-+.|.|+||+|||||.-.|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3567666666 788899999999999999877754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.024 Score=51.55 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998763
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.84 E-value=0.057 Score=49.32 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=26.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
..||.....+ .|.-++|.|+||+|||||.-.|..
T Consensus 3 ~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 3 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4566555544 577899999999999999877664
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.026 Score=50.53 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998776
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.021 Score=51.01 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999765
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.022 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|.+|+|||||++.+.+-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999987763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.025 Score=50.97 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999987653
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.74 E-value=0.014 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++||.|+|||||||+.+.|.....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999987553
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.028 Score=52.54 Aligned_cols=21 Identities=52% Similarity=0.714 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
++||.|+.||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.03 Score=50.33 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 77999999999999987765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.65 E-value=0.025 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+.|.||+|+|||+|.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.029 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998854
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.024 Score=50.83 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.55 E-value=0.032 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
..+.|.||+|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999998765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.025 Score=50.80 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|++|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988863
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.50 E-value=0.036 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=19.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.+++++||+|+||||.+-=||-+.
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999998876566543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.029 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|.+|+|||||++-+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.033 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+..-+.+.||+|+|||+|.+.|+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 33457899999999999999999754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.44 E-value=0.029 Score=50.98 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.40 E-value=0.03 Score=49.70 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.34 E-value=0.039 Score=49.53 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++|.+++|-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999998643
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.29 E-value=0.031 Score=49.84 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888763
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.25 E-value=0.019 Score=52.05 Aligned_cols=20 Identities=45% Similarity=0.639 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999998865
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.029 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.033 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.07 E-value=0.033 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=16.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 104 GEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 104 Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-.+++++||+|+||||.+-=||.+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999876666544
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.037 Score=49.76 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.03 E-value=0.038 Score=50.93 Aligned_cols=24 Identities=38% Similarity=0.720 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999997664
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.01 E-value=0.038 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++++||+|+||||.+-=||-+..
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999998866675543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.031 Score=51.38 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.92 E-value=0.035 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.+.||+|+|||+|.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.91 E-value=0.037 Score=49.36 Aligned_cols=20 Identities=30% Similarity=0.611 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.91 E-value=0.037 Score=52.00 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.+-||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.04 Score=49.12 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.71 E-value=0.034 Score=54.23 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 102 SPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 102 ~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++..-+.|.||+|+|||+|.+++++..
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 344458899999999999999999865
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.035 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
+.|+|.+|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999888764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.62 E-value=0.027 Score=50.66 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
+.++|++|+|||||++.+.+-
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999998753
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.036 Score=49.74 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.43 E-value=0.042 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+.|.||+|+|||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999854
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.044 Score=51.35 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
.+++++||. -.+.......+.+.|.+..+ ...++++++++.
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence 469999996 46777888888877776543 445566666544
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.048 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++||-|+.|||||||-+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.33 E-value=0.03 Score=50.37 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.048 Score=48.75 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|++|+|||||++-+.+-
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988763
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.25 E-value=0.047 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|.+|+|||||++-+.+-
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999976653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.23 E-value=0.047 Score=49.49 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999887764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.043 Score=49.31 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.13 E-value=0.051 Score=49.94 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.12 E-value=0.032 Score=50.15 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.05 Score=48.56 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++++|.+|+|||||++-+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.89 E-value=0.054 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
+.++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998776
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.84 E-value=0.036 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45566999999999999999765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.054 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.66 E-value=0.032 Score=55.98 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQ 130 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~ 130 (679)
-+.|.||.|+|||||+|.+++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 5789999999999999999998864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.65 E-value=0.064 Score=55.42 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 228 IAHEMLINPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 228 IA~aL~~~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
+..+|=++|++++..|.. |+.++...+ +.+..|..|+.|.|-.+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 444667899999999997 666666555 44667999999999754
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.05 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCc
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999854
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.59 E-value=0.059 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 005754 106 ILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G 126 (679)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.58 E-value=0.058 Score=49.05 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 005754 107 LAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~ 125 (679)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6799999999999999884
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.056 Score=53.25 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+-|-.|+..+|+|++|+|||||+..|+..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999998863
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.063 Score=48.57 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
-++++|.+|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999977663
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.10 E-value=0.061 Score=53.43 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 005754 107 LAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~ 128 (679)
+||+|.+.+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999853
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.092 Score=51.03 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~ 127 (679)
+=+++|.++-|.||+|+|||||.-.++..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 67899999999999999999998666553
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.88 E-value=0.065 Score=48.67 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999988765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.84 E-value=0.072 Score=50.07 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 005754 106 ILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~ 125 (679)
-+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999998774
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.82 E-value=0.12 Score=46.72 Aligned_cols=34 Identities=35% Similarity=0.272 Sum_probs=25.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 92 TILNGITGMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 92 ~iL~~vs~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+-+|..... -.|.=+.|.|+||+|||||.-.|..
T Consensus 4 t~~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 4 TSLHGVLVD-VYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEESEEEE-ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 345664444 4688899999999999999866654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.075 Score=47.18 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|.+|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998765
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.45 E-value=0.068 Score=52.73 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
+||+|.+.+|||||+++|++-
T Consensus 13 iGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999975
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.39 E-value=0.068 Score=56.02 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=27.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCCeeeEEEECCCCccccccCcEEEEecC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLHQGHGLTGTILTNNNKPTKHISKRTGFVTQD 159 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~~~~~~~G~i~~~g~~~~~~~~~~i~yv~Q~ 159 (679)
=+.++||+|+|||-|.+.||+.+.- + -+..+....+ .+|||-.|
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--P---Fv~~daT~fT-----eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--P---FIKVEATKFT-----EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--C---EEEEEGGGGC---------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--C---EEEeecceee-----ecceeecc
Confidence 4789999999999999999997642 2 2333333222 26787775
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.22 E-value=0.081 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++|.-.||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.12 E-value=0.079 Score=48.30 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 005754 107 LAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~ 127 (679)
++|+|++|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.97 E-value=0.081 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
.++++|.-.||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999964
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.76 E-value=0.11 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
|...+.++||+|+|||.|.+.||-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44468899999999999999999764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.67 E-value=0.094 Score=47.36 Aligned_cols=20 Identities=35% Similarity=0.693 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
+.++|.+|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999976654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.55 E-value=0.12 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 005754 105 EILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G 126 (679)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999964
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.22 E-value=0.11 Score=48.32 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
++|+|..++|||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.12 Score=48.47 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 105 EILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
.+++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4788999999999999999997554
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.73 E-value=0.15 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-++|+|.-.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.42 E-value=0.13 Score=50.13 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~ 128 (679)
-+||+|-+.+|||||+++|++-.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999753
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.33 E-value=0.11 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~ 127 (679)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999988764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.97 E-value=0.13 Score=50.01 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 005754 106 ILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~ 125 (679)
-++|+|+.|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999984
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.89 E-value=0.13 Score=52.18 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=26.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCcC
Q 005754 101 VSPGEILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 101 i~~Ge~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
++++..+.+.||+|+||||+.+.|++...
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36788999999999999999999998764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.73 E-value=0.16 Score=45.58 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=21.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCC
Q 005754 107 LAILGPSGSGKSTMLNVLAGRLHQGHG 133 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G~~~~~~~ 133 (679)
+.|+|..|+|||||++-+..-..|+.+
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence 689999999999999988654444333
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.23 E-value=0.15 Score=45.88 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q 005754 107 LAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 107 ~allGpnGsGKSTLL~~L~G 126 (679)
+.|+|..|+|||||++-+..
T Consensus 5 iv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999998865
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.83 E-value=0.17 Score=49.49 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 005754 106 ILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~ 125 (679)
-++|+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999999883
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.83 E-value=0.19 Score=48.81 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=23.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+=++.|.++-|.||+|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHH
Confidence 5788999999999999999999655544
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.29 E-value=0.23 Score=48.21 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=26.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
+=++.|.++-|-||+|||||||.-.++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 578999999999999999999998777644
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.07 E-value=0.25 Score=48.13 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=24.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAG 126 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G 126 (679)
+.+-+||..+|.|++|+|||||+..++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 5678999999999999999999877764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.94 E-value=0.23 Score=49.49 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=23.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 99 GMVSPGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 99 ~~i~~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
...++| ++.+.||+|+|||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 455555 66778999999999999999865
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.91 E-value=0.22 Score=46.54 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=38.6
Q ss_pred HhhCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 232 MLINPSLLILDEPTSG-LDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 232 L~~~P~lllLDEPtsg-LD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.+.+.+++++|+--.= =+...+..+..++..+.+.|+.+|+++..+..
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 3568899999987432 25778888999999998889999999987654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.80 E-value=0.22 Score=51.05 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=17.7
Q ss_pred eEEEEECCCCCcHHHHHHHHh
Q 005754 105 EILAILGPSGSGKSTMLNVLA 125 (679)
Q Consensus 105 e~~allGpnGsGKSTLL~~L~ 125 (679)
..+.|+|++||||||+++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 458999999999999997544
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.34 E-value=0.29 Score=45.30 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCcc
Q 005754 235 NPSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPS 278 (679)
Q Consensus 235 ~P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~ 278 (679)
+.+++++||. -.|...++..+++.|.+-. .+..+|++++++.
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPE 149 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChh
Confidence 3679999986 3455666777776666532 2566788888865
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.42 E-value=0.32 Score=45.86 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCccH
Q 005754 236 PSLLILDEPTSGLDSTAAYRLVSTLGSLVQRGKTIVTSMHQPSS 279 (679)
Q Consensus 236 P~lllLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~tH~~~~ 279 (679)
.+++++||.= .|+..++..+++.|.+-. .+..+|++++++..
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 4699999985 488777777776665432 35788888888654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.72 E-value=0.35 Score=46.84 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-..|+||+|.|||+++.-++.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999998764
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.84 E-value=0.41 Score=44.04 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q 005754 106 ILAILGPSGSGKSTMLNVLAGRLH 129 (679)
Q Consensus 106 ~~allGpnGsGKSTLL~~L~G~~~ 129 (679)
-..|+||+|.|||++..-|+.++.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 357999999999999999998764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.56 E-value=0.4 Score=47.45 Aligned_cols=26 Identities=38% Similarity=0.666 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCc
Q 005754 103 PGEILAILGPSGSGKSTMLNVLAGRL 128 (679)
Q Consensus 103 ~Ge~~allGpnGsGKSTLL~~L~G~~ 128 (679)
|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHh
Confidence 44467799999999999999999865
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=80.26 E-value=0.33 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=16.0
Q ss_pred EEEEECCCCCcHHHH-HHHHhcC
Q 005754 106 ILAILGPSGSGKSTM-LNVLAGR 127 (679)
Q Consensus 106 ~~allGpnGsGKSTL-L~~L~G~ 127 (679)
-+.|.|+.||||||. +..++.+
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~l 38 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHL 38 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHH
Confidence 367999999999975 4544443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.14 E-value=0.3 Score=47.65 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=17.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH
Q 005754 91 RTILNGITGMVSPGEILAILGPSGSGKSTML 121 (679)
Q Consensus 91 ~~iL~~vs~~i~~Ge~~allGpnGsGKSTLL 121 (679)
+.|+++. .| -+.|.|+.||||||.|
T Consensus 17 ~~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 17 QEAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHhCC-----CC-CEEEEecCCccHHHHH
Confidence 4466643 34 4679999999999765
|