Citrus Sinensis ID: 005785
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | 2.2.26 [Sep-21-2011] | |||||||
| O74944 | 547 | DNA polymerase kappa OS=S | yes | no | 0.605 | 0.749 | 0.368 | 2e-78 | |
| P34409 | 596 | DNA polymerase kappa OS=C | yes | no | 0.632 | 0.718 | 0.381 | 6e-76 | |
| Q9QUG2 | 852 | DNA polymerase kappa OS=M | yes | no | 0.261 | 0.207 | 0.556 | 3e-58 | |
| Q9UBT6 | 870 | DNA polymerase kappa OS=H | yes | no | 0.258 | 0.201 | 0.550 | 2e-57 | |
| B4SIF5 | 356 | DNA polymerase IV OS=Sten | yes | no | 0.483 | 0.918 | 0.401 | 3e-55 | |
| B2FLR2 | 364 | DNA polymerase IV OS=Sten | yes | no | 0.483 | 0.898 | 0.401 | 4e-55 | |
| P58965 | 384 | DNA polymerase IV OS=Ther | yes | no | 0.488 | 0.861 | 0.373 | 1e-54 | |
| Q5FSM8 | 356 | DNA polymerase IV OS=Gluc | yes | no | 0.490 | 0.932 | 0.377 | 3e-54 | |
| Q8PCW8 | 359 | DNA polymerase IV OS=Xant | yes | no | 0.494 | 0.933 | 0.396 | 6e-54 | |
| Q4UQI2 | 359 | DNA polymerase IV OS=Xant | yes | no | 0.494 | 0.933 | 0.396 | 6e-54 |
| >sp|O74944|POLK_SCHPO DNA polymerase kappa OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug40 PE=1 SV=3 | Back alignment and function desciption |
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Score = 294 bits (752), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/429 (36%), Positives = 262/429 (61%), Gaps = 19/429 (4%)
Query: 29 KAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPV------ 82
K+G + V+++K+ +++YE SKGSK+FE E++++ ++ +IE ++ K S +
Sbjct: 45 KSGQENVNQKKINEIIYEASKGSKFFEAEQKRDRELRLRIEKVQVEVEKYQSKLRFDKAF 104
Query: 83 ---ISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSM 139
+ Q+ D + + A RDL++ +HVD DAFYA++E L NP LK PMAVG S+
Sbjct: 105 QREWTIRQESVDTTVEDFRAKRDLTQIIVHVDCDAFYASIEELKNPKLKSLPMAVGK-SV 163
Query: 140 ICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAA 199
+CTANY AR+FGVR+AMP FIARK+CP+L+ +P + ++Y S + V +YD N A
Sbjct: 164 LCTANYVARKFGVRSAMPEFIARKICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPA 223
Query: 200 SLDEAYLDITEVCRERGIS-GIE----IAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSD 254
S+DE Y+++T R + ++ +E + E++R V+EE G+T S G+A N+LLAK+ S+
Sbjct: 224 SIDEFYMNLTSHLRLQELAFTVENITMVVEKIRKQVHEETGVTVSCGIAANKLLAKIASN 283
Query: 255 INKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLC 314
KPN QF +P D + + F++ LP+R++ GIG+V E L + I TC ++ + +L
Sbjct: 284 KRKPNNQFFIPFDEIGISKFMNDLPVREVSGIGRVLEQQLLGL-EIKTCGDIQRNLVILS 342
Query: 315 AVFSHSTADFFLSVGLGLGSTNTPQ--ARFRKSISSERTFSVT-EDKALLYRKLAEIAEM 371
+F + L G G+T + RK+I SE TFS +++ KL + +
Sbjct: 343 YIFLPKSFQNLLRCSYGFGTTILDEYGESKRKTIGSEATFSSNLSSPSIIEYKLRLLVQN 402
Query: 372 LSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAELPVSLR 431
+S ++QK GL ++ +K KT+ F+V T+ ++ ++I S D+LK A LL+ P+++R
Sbjct: 403 VSENLQKRGLVTNSIAIKYKTSEFQVHTKQKSIGQFIHSESDLLKPALQLLRQSYPMTIR 462
Query: 432 LIGLRVTQF 440
L+G+R T+
Sbjct: 463 LLGVRATKL 471
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DNA polymerase specifically involved in DNA repair. Plays an important role in translesion synthesis, where the normal high-fidelity DNA polymerases cannot proceed and DNA synthesis stalls. Has a role in meiosis. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|P34409|POLK_CAEEL DNA polymerase kappa OS=Caenorhabditis elegans GN=polk-1 PE=3 SV=3 | Back alignment and function description |
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| >sp|Q9QUG2|POLK_MOUSE DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1 | Back alignment and function description |
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| >sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|B2FLR2|DPO4_STRMK DNA polymerase IV OS=Stenotrophomonas maltophilia (strain K279a) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|P58965|DPO4_THETN DNA polymerase IV OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5FSM8|DPO4_GLUOX DNA polymerase IV OS=Gluconobacter oxydans (strain 621H) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8PCW8|DPO4_XANCP DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4UQI2|DPO4_XANC8 DNA polymerase IV OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dinB PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| 296083048 | 704 | unnamed protein product [Vitis vinifera] | 0.989 | 0.951 | 0.672 | 0.0 | |
| 225428993 | 661 | PREDICTED: DNA polymerase kappa-like [Vi | 0.964 | 0.987 | 0.690 | 0.0 | |
| 449438619 | 693 | PREDICTED: DNA polymerase kappa-like [Cu | 0.971 | 0.949 | 0.644 | 0.0 | |
| 356539372 | 663 | PREDICTED: DNA polymerase kappa-like [Gl | 0.957 | 0.977 | 0.670 | 0.0 | |
| 79362498 | 671 | DNA polymerase kappa subunit [Arabidopsi | 0.974 | 0.983 | 0.635 | 0.0 | |
| 357480655 | 706 | DNA polymerase IV [Medicago truncatula] | 0.878 | 0.842 | 0.648 | 0.0 | |
| 297847332 | 636 | predicted protein [Arabidopsis lyrata su | 0.924 | 0.984 | 0.619 | 0.0 | |
| 242038847 | 668 | hypothetical protein SORBIDRAFT_01g01463 | 0.948 | 0.961 | 0.593 | 0.0 | |
| 413933667 | 670 | hypothetical protein ZEAMMB73_188779 [Ze | 0.945 | 0.955 | 0.584 | 0.0 | |
| 326498699 | 655 | predicted protein [Hordeum vulgare subsp | 0.929 | 0.960 | 0.577 | 0.0 |
| >gi|296083048|emb|CBI22452.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/711 (67%), Positives = 553/711 (77%), Gaps = 41/711 (5%)
Query: 1 MERSDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERK 60
ME+++ E ++S+++ RPWQSY TVYTNAKAGMDGVDKEKVQ+ VYEMSKGSKYFENEERK
Sbjct: 1 MEKAEAEPSASADSARPWQSYTTVYTNAKAGMDGVDKEKVQRTVYEMSKGSKYFENEERK 60
Query: 61 EAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVE 120
EAFI+QKI++MRARCAKL++ ISHYQ VADKRILELEATRDLSR WLHVDMDAFYAAVE
Sbjct: 61 EAFIRQKIDNMRARCAKLSASDISHYQMVADKRILELEATRDLSRIWLHVDMDAFYAAVE 120
Query: 121 TLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTY 180
TL NPSL+G+PMAVG MSMI TANYEAR+FGVRAAMPGFIARKLCPELIFVPTDF KYTY
Sbjct: 121 TLDNPSLRGRPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTY 180
Query: 181 YSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSA 240
YSDLTRKVF KYDPNFMAASLDEAYLDITEVC ER ++ EIAEELRTSV+E GLTCSA
Sbjct: 181 YSDLTRKVFQKYDPNFMAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSA 240
Query: 241 GVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGI 300
GVAPNRLLAKVCSDINKPNGQFVLP++RMAVMTFISSLPIRKIGGIGKVTEHIL VFGI
Sbjct: 241 GVAPNRLLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGI 300
Query: 301 NTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKAL 360
NTCEEMLQKG LCA+FS S+ADFFLSVGLGLG T+TPQ RFRKSIS+ERTFS T+D AL
Sbjct: 301 NTCEEMLQKGGFLCALFSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTAL 360
Query: 361 LYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASV 420
LY+KLAE++EMLS DMQKEGL GRTLTLKLKTASFEVR+RAVT+QKYI S EDIL HA
Sbjct: 361 LYQKLAELSEMLSIDMQKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALK 420
Query: 421 LLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKIVGDQNSLGSDI 480
LL AELP+SLRLIGLR++ FNEDK SDPTQKTL NF+ SG AS K V + + LGSD
Sbjct: 421 LLNAELPLSLRLIGLRISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDT 480
Query: 481 NDDCLIDDKETSVSLDVSETNNY-----------------------EFGDPVCDNSLPDL 517
+D + D E +S+D ET +Y G +N LP L
Sbjct: 481 SDSHFMVDPENDLSIDNHETCHYVSEDLLDSNLLSDLDHCNFNLSNNSGKIDNNNELP-L 539
Query: 518 NDE--NCSFSNKISEVEKIHENEVSQLLEGNSLVLRQE-EGSCCDGVEEVDKDITPDNKV 574
N + N + K H+ +VS L+E +S ++ E + D + D+ D+ V
Sbjct: 540 NGSVAKVNAPNVVGCAPKSHQIKVSHLVEADSFSFSEQCESNRPDRARRTNNDL--DDGV 597
Query: 575 GTSSNQKDQFIWLDDYKCSLCGTEMPPSFIEERQEHSDFHLAERLQKEESGSDLRILTHR 634
SSNQK+QF+W++DYKCSLCG E+PP+F+EERQEH DFHLAE+LQKEES + ++ ++
Sbjct: 598 -PSSNQKEQFLWVNDYKCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESDNSRNLMLNQ 656
Query: 635 ERCVRTQRDHIASHRKRKKQ--------KLFEKEGTHIPIDMFFAKRNRNF 677
+QRDH AS R+ K+ K +KE H+PIDMFF K N+NF
Sbjct: 657 R---FSQRDHTASQRRHKRHKSSKKEGSKSSQKESKHLPIDMFFVKSNQNF 704
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428993|ref|XP_002264518.1| PREDICTED: DNA polymerase kappa-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449438619|ref|XP_004137085.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus] gi|449495765|ref|XP_004159938.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356539372|ref|XP_003538172.1| PREDICTED: DNA polymerase kappa-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|79362498|ref|NP_175420.3| DNA polymerase kappa subunit [Arabidopsis thaliana] gi|46394839|gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana] gi|332194382|gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357480655|ref|XP_003610613.1| DNA polymerase IV [Medicago truncatula] gi|355511948|gb|AES93571.1| DNA polymerase IV [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297847332|ref|XP_002891547.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337389|gb|EFH67806.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|242038847|ref|XP_002466818.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor] gi|241920672|gb|EER93816.1| hypothetical protein SORBIDRAFT_01g014630 [Sorghum bicolor] | Back alignment and taxonomy information |
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| >gi|413933667|gb|AFW68218.1| hypothetical protein ZEAMMB73_188779 [Zea mays] | Back alignment and taxonomy information |
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| >gi|326498699|dbj|BAK02335.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 677 | ||||||
| TAIR|locus:2031050 | 671 | AT1G49980 [Arabidopsis thalian | 0.971 | 0.980 | 0.627 | 6.8e-214 | |
| ZFIN|ZDB-GENE-060526-137 | 875 | polk "polymerase (DNA directed | 0.276 | 0.213 | 0.566 | 3.6e-102 | |
| UNIPROTKB|J9P5L3 | 861 | POLK "Uncharacterized protein" | 0.276 | 0.217 | 0.540 | 3.3e-101 | |
| UNIPROTKB|E2RAS5 | 871 | POLK "Uncharacterized protein" | 0.276 | 0.214 | 0.540 | 6.7e-101 | |
| UNIPROTKB|Q9UBT6 | 870 | POLK "DNA polymerase kappa" [H | 0.276 | 0.214 | 0.550 | 2.5e-99 | |
| UNIPROTKB|G3V8W7 | 851 | Polk "Protein Polk" [Rattus no | 0.276 | 0.219 | 0.550 | 3.7e-99 | |
| MGI|MGI:1349767 | 852 | Polk "polymerase (DNA directed | 0.276 | 0.219 | 0.556 | 7.2e-99 | |
| UNIPROTKB|Q8AWW1 | 867 | DINB1 "Uncharacterized protein | 0.276 | 0.215 | 0.550 | 2.4e-98 | |
| UNIPROTKB|A6QNV6 | 877 | POLK "Uncharacterized protein" | 0.314 | 0.242 | 0.509 | 2.8e-98 | |
| UNIPROTKB|F1NCT8 | 862 | POLK "Uncharacterized protein" | 0.276 | 0.216 | 0.550 | 1.2e-97 |
| TAIR|locus:2031050 AT1G49980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2067 (732.7 bits), Expect = 6.8e-214, P = 6.8e-214
Identities = 424/676 (62%), Positives = 513/676 (75%)
Query: 5 DGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFI 64
+GE +S++ + RPW+SY+TV+TNAKAGM+GVDKEKVQ+VVYEMSKGSKYF+NEERKEA +
Sbjct: 3 NGESSSTNNSSRPWESYNTVFTNAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEALM 62
Query: 65 QQKIEHMRARCAKLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSN 124
+QKIEHMR RCAKL+S +S+YQKV DKRILELEATRDLSR WLHVDMDAFYAAVETLS+
Sbjct: 63 KQKIEHMRDRCAKLSSLDLSNYQKVVDKRILELEATRDLSRIWLHVDMDAFYAAVETLSD 122
Query: 125 PSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYYSDL 184
PS+KGKPMAVG +SMI TANYEAR+FGVRAAMPGFIARKLCP+LIFVP DFTKYT+YSDL
Sbjct: 123 PSIKGKPMAVGGLSMISTANYEARKFGVRAAMPGFIARKLCPDLIFVPVDFTKYTHYSDL 182
Query: 185 TRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAEELRTSVYEEAGLTCSAGVAP 244
TRKVF YDP+F+A SLDEAYLDITEVCRERG+SG EIAEELR+SVY E GLTCSAGVA
Sbjct: 183 TRKVFRNYDPHFIAGSLDEAYLDITEVCRERGLSGGEIAEELRSSVYSETGLTCSAGVAA 242
Query: 245 NRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCE 304
NRLLAKVCSDINKPNGQFVL NDR VMTF+S LP+RKIGGIGKVTEHIL+D GI TCE
Sbjct: 243 NRLLAKVCSDINKPNGQFVLQNDRSTVMTFVSFLPVRKIGGIGKVTEHILKDALGIKTCE 302
Query: 305 EMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRK 364
EM+QKGSLL A+FS S+ADFFLSVGLGLG TNTPQ R RKSISSERTF+ T D+ LLY K
Sbjct: 303 EMVQKGSLLYALFSQSSADFFLSVGLGLGGTNTPQVRSRKSISSERTFAATGDERLLYSK 362
Query: 365 LAEIAEMLSADMQKEXXXXXXXXXXXXXASFEVRTRAVTLQKYISSSEDILKHASVLLKA 424
L E+AEMLS DM+KE ASFE+R+RAV+LQ+Y SS+DILKHA+ LLKA
Sbjct: 363 LDELAEMLSHDMKKEGLTARTLTLKLKTASFEIRSRAVSLQRYTCSSDDILKHATKLLKA 422
Query: 425 ELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLTNFMTSGHASKKI--VGDQNSLGSDIND 482
ELPVS+RLIGLR++QF E+ +R SDP+Q T+T F+ +S++ + D +S D N
Sbjct: 423 ELPVSVRLIGLRMSQFVEE-IRN-SDPSQGTITKFIVQKDSSRQAQDLDDNDSFDLDANK 480
Query: 483 DCLIDDKETSVSLDVSETNNYEFGDPVCDNSLPDLNDENCSFSNK-ISEVEKIHENEVSQ 541
+CL +D+ +VS ET++ D V + + + S K I E + + E Q
Sbjct: 481 NCLSNDESGNVSFGSHETSSAHLKDVV------EYEERSQIDSGKVIPNQECMKKEERLQ 534
Query: 542 LLEGNSLVLRQEEGSCCDGVEEVDKDITPDNKVGTSSNQKDQFIWLDDYKCSLCGTEMPP 601
+LEG+SL+ + +E C D + + + Q + W+D YKC LCG E+PP
Sbjct: 535 ILEGDSLLKKYKE--CKPDTSHSMNDNSNATEAVSVFPQTEPLYWIDGYKCVLCGIELPP 592
Query: 602 SFIEERQEHSDFHLAERLQKEESGSDLRILTHRERCVRTQRDHIASHRKRKKQKLFEKEG 661
SF+EERQEHSDFHLA+RLQ EE+GS + R + ++ + K KKQK +K+
Sbjct: 593 SFVEERQEHSDFHLAQRLQNEETGSSSSTTPSKRRILGKEK----VNSKPKKQKPDQKDS 648
Query: 662 T-HIPIDMFFAKRNRN 676
+ HIPI FF K N+N
Sbjct: 649 SKHIPIHAFFTKSNQN 664
|
|
| ZFIN|ZDB-GENE-060526-137 polk "polymerase (DNA directed) kappa" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P5L3 POLK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RAS5 POLK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9UBT6 POLK "DNA polymerase kappa" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G3V8W7 Polk "Protein Polk" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1349767 Polk "polymerase (DNA directed), kappa" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8AWW1 DINB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A6QNV6 POLK "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NCT8 POLK "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.691 |
| 4th Layer | 2.7.7.7 | 0.737 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 677 | |||
| cd03586 | 334 | cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kapp | 1e-137 | |
| PRK02406 | 343 | PRK02406, PRK02406, DNA polymerase IV; Validated | 7e-96 | |
| PRK14133 | 347 | PRK14133, PRK14133, DNA polymerase IV; Provisional | 1e-80 | |
| COG0389 | 354 | COG0389, DinP, Nucleotidyltransferase/DNA polymera | 1e-80 | |
| PTZ00205 | 571 | PTZ00205, PTZ00205, DNA polymerase kappa; Provisio | 3e-74 | |
| PRK03858 | 396 | PRK03858, PRK03858, DNA polymerase IV; Validated | 5e-60 | |
| PRK03348 | 454 | PRK03348, PRK03348, DNA polymerase IV; Provisional | 1e-58 | |
| PRK02794 | 419 | PRK02794, PRK02794, DNA polymerase IV; Provisional | 1e-56 | |
| PRK01810 | 407 | PRK01810, PRK01810, DNA polymerase IV; Validated | 8e-53 | |
| pfam00817 | 148 | pfam00817, IMS, impB/mucB/samB family | 1e-52 | |
| cd00424 | 343 | cd00424, PolY, Y-family of DNA polymerases | 8e-52 | |
| cd01701 | 404 | cd01701, PolY_Rev1, DNA polymerase Rev1 | 1e-49 | |
| PRK03352 | 346 | PRK03352, PRK03352, DNA polymerase IV; Validated | 2e-45 | |
| cd01702 | 359 | cd01702, PolY_Pol_eta, DNA Polymerase eta | 8e-43 | |
| PRK01216 | 351 | PRK01216, PRK01216, DNA polymerase IV; Validated | 6e-42 | |
| cd01703 | 379 | cd01703, PolY_Pol_iota, DNA Polymerase iota | 5e-41 | |
| PRK03103 | 409 | PRK03103, PRK03103, DNA polymerase IV; Reviewed | 1e-38 | |
| cd01700 | 344 | cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Poly | 2e-31 | |
| PRK03609 | 422 | PRK03609, umuC, DNA polymerase V subunit UmuC; Rev | 3e-13 | |
| pfam11799 | 136 | pfam11799, IMS_C, impB/mucB/samB family C-terminal | 4e-12 | |
| cd03468 | 335 | cd03468, PolY_like, DNA Polymerase Y-family | 3e-08 | |
| pfam11798 | 32 | pfam11798, IMS_HHH, IMS family HHH motif | 9e-05 |
| >gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa | Back alignment and domain information |
|---|
Score = 404 bits (1040), Expect = e-137
Identities = 151/338 (44%), Positives = 207/338 (61%), Gaps = 9/338 (2%)
Query: 108 LHVDMDAFYAAVETLSNPSLKGKPMAVGTMS---MICTANYEARRFGVRAAMPGFIARKL 164
+H+DMDAFYA+VE NP LKGKP+AVG S ++ TA+YEAR+FGVR+AMP F A+KL
Sbjct: 1 IHIDMDAFYASVEQRDNPELKGKPVAVGGSSDRGVVSTASYEARKFGVRSAMPIFQAKKL 60
Query: 165 CPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGISGIEIAE 224
CP LIFVP F KY S ++ +Y P S+DEAYLD+T+ S EIA+
Sbjct: 61 CPNLIFVPPRFDKYREVSRQIMEILREYTPLVEPLSIDEAYLDVTD-YVRLFGSATEIAK 119
Query: 225 ELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIG 284
E+R + EE GLT SAG+APN+ LAK+ SD+NKPNG V+P + V F++ LP+RKI
Sbjct: 120 EIRARIREETGLTASAGIAPNKFLAKIASDLNKPNGLTVIPPE--DVEEFLAPLPVRKIP 177
Query: 285 GIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRK 344
G+GKVT L++ GI T ++ + L + + G+ + R RK
Sbjct: 178 GVGKVTAEKLKE-LGIKTIGDLAKLDVELLKKLFGKSGRRLYELARGIDNRPVEPDRERK 236
Query: 345 SISSERTFSV-TEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVT 403
SI ERTFS D L +L E+AE L+ ++K GL+GRT+T+KLK A F RTR+ T
Sbjct: 237 SIGVERTFSEDLTDPEELLEELLELAEELAERLRKRGLKGRTVTVKLKYADFSTRTRSRT 296
Query: 404 LQKYISSSEDILKHASVLLKAELPV-SLRLIGLRVTQF 440
L + +EDI + A LL+ L +RL+G+R++
Sbjct: 297 LPEPTDDAEDIYELALELLEELLDGRPIRLLGVRLSGL 334
|
Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases. Length = 334 |
| >gnl|CDD|235035 PRK02406, PRK02406, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|140232 PTZ00205, PTZ00205, DNA polymerase kappa; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179663 PRK03858, PRK03858, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179473 PRK02794, PRK02794, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179337 PRK01810, PRK01810, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|216135 pfam00817, IMS, impB/mucB/samB family | Back alignment and domain information |
|---|
| >gnl|CDD|176453 cd00424, PolY, Y-family of DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|176455 cd01701, PolY_Rev1, DNA polymerase Rev1 | Back alignment and domain information |
|---|
| >gnl|CDD|179564 PRK03352, PRK03352, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|176456 cd01702, PolY_Pol_eta, DNA Polymerase eta | Back alignment and domain information |
|---|
| >gnl|CDD|179251 PRK01216, PRK01216, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|176457 cd01703, PolY_Pol_iota, DNA Polymerase iota | Back alignment and domain information |
|---|
| >gnl|CDD|235104 PRK03103, PRK03103, DNA polymerase IV; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|176454 cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V | Back alignment and domain information |
|---|
| >gnl|CDD|179607 PRK03609, umuC, DNA polymerase V subunit UmuC; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|221229 pfam11799, IMS_C, impB/mucB/samB family C-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|176458 cd03468, PolY_like, DNA Polymerase Y-family | Back alignment and domain information |
|---|
| >gnl|CDD|204747 pfam11798, IMS_HHH, IMS family HHH motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| KOG2094 | 490 | consensus Predicted DNA damage inducible protein [ | 100.0 | |
| PTZ00205 | 571 | DNA polymerase kappa; Provisional | 100.0 | |
| PRK03858 | 396 | DNA polymerase IV; Validated | 100.0 | |
| PRK01216 | 351 | DNA polymerase IV; Validated | 100.0 | |
| cd01701 | 404 | PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesi | 100.0 | |
| PRK02794 | 419 | DNA polymerase IV; Provisional | 100.0 | |
| PRK03103 | 409 | DNA polymerase IV; Reviewed | 100.0 | |
| PRK01810 | 407 | DNA polymerase IV; Validated | 100.0 | |
| PRK03352 | 346 | DNA polymerase IV; Validated | 100.0 | |
| PRK14133 | 347 | DNA polymerase IV; Provisional | 100.0 | |
| PRK03348 | 454 | DNA polymerase IV; Provisional | 100.0 | |
| cd01703 | 379 | PolY_Pol_iota DNA Polymerase iota. Pol iota, also | 100.0 | |
| cd00424 | 343 | PolY Y-family of DNA polymerases. Y-family DNA pol | 100.0 | |
| cd03586 | 334 | PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, | 100.0 | |
| PRK03609 | 422 | umuC DNA polymerase V subunit UmuC; Reviewed | 100.0 | |
| cd01702 | 359 | PolY_Pol_eta DNA Polymerase eta. Pol eta, also cal | 100.0 | |
| PRK02406 | 343 | DNA polymerase IV; Validated | 100.0 | |
| cd01700 | 344 | PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. | 100.0 | |
| COG0389 | 354 | DinP Nucleotidyltransferase/DNA polymerase involve | 100.0 | |
| cd03468 | 335 | PolY_like DNA Polymerase Y-family. Y-family DNA po | 100.0 | |
| KOG2095 | 656 | consensus DNA polymerase iota/DNA damage inducible | 100.0 | |
| KOG2093 | 1016 | consensus Translesion DNA polymerase - REV1 deoxyc | 100.0 | |
| PF00817 | 149 | IMS: impB/mucB/samB family; InterPro: IPR001126 In | 100.0 | |
| PF11799 | 127 | IMS_C: impB/mucB/samB family C-terminal domain; In | 99.39 | |
| PF11798 | 32 | IMS_HHH: IMS family HHH motif; InterPro: IPR024728 | 98.37 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 97.25 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 95.96 | |
| PF11731 | 93 | Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd | 94.98 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 94.79 | |
| PF04994 | 81 | TfoX_C: TfoX C-terminal domain; InterPro: IPR00707 | 93.82 | |
| PF08827 | 59 | DUF1805: Domain of unknown function (DUF1805); Int | 91.51 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 91.39 | |
| COG3743 | 133 | Uncharacterized conserved protein [Function unknow | 90.48 | |
| PF03118 | 66 | RNA_pol_A_CTD: Bacterial RNA polymerase, alpha cha | 87.37 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 83.45 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 81.75 |
| >KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-115 Score=900.06 Aligned_cols=450 Identities=55% Similarity=0.843 Sum_probs=432.2
Q ss_pred CCCCCCCCCCCCCCccccceecccccCCCCCcCHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcCcchH
Q 005785 4 SDGECASSSENPRPWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVI 83 (677)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~kag~~~~d~~~i~~ii~~~skgs~~~~~e~~~~~~~~~ri~~~~~~~~~l~~~~~ 83 (677)
||+......++..||..|...|+++||||+||||||||+||||+||||+||+||+||++++++||++|+.++++++..+|
T Consensus 2 dn~~~~~~~~ss~~~~~l~~~~nd~KaGmegvdkeKInkiI~E~skgSkff~~e~kke~~~~qrIe~m~~r~~k~ts~e~ 81 (490)
T KOG2094|consen 2 DNAIEDDGSSSSDEEATLKRRLNDNKAGMEGVDKEKINKIIYEASKGSKFFENEQKKERELRQRIEKMQVRVAKYTSREL 81 (490)
T ss_pred CccccCCCCCccChHHHHHhhccCccccccccCHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45666677777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEEeCCchhhhcccccCCCCCCCcEEEecCCeEEecCHHHHHcCCCCCCcHHHHHH
Q 005785 84 SHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163 (677)
Q Consensus 84 ~~~~~~~d~~~~~le~~rd~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~~~V~taNY~ARk~GVr~GMp~~~Akk 163 (677)
...+..||..+++||++||++|+|+|||||||||+||+++||.|+++|+|||+.+|++|+||+||+||||+|||+|+|++
T Consensus 82 ~k~q~~vd~~~meleasRdLsr~~vhvDmDAfyAaVE~~dnP~lk~~PmAVGs~smlsTaNY~ARkFGVRaaMPgFIark 161 (490)
T KOG2094|consen 82 TKRQESVDTTVMELEASRDLSRIIVHVDMDAFYAAVEMLDNPKLKSKPMAVGSKSMLSTANYVARKFGVRAAMPGFIARK 161 (490)
T ss_pred HHHHHHHHHHHHHHHhhccccceEEEechHHHHHHHHhccCcccccCCccccchhhhhhhhHHHHHhhhhhcCchHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEeCCChHHHHHHHHHHHHHHHhcCCceEEeccCceEEecchhhhhcCC------CHHHHHHHHHHHHHHHhCCe
Q 005785 164 LCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRERGI------SGIEIAEELRTSVYEEAGLT 237 (677)
Q Consensus 164 LCP~Lvvvp~d~~~Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~~~g~------~~~~la~~IR~~I~~~tGlt 237 (677)
|||+|++||.||.+|+.+|+++.+||.+|+|++.++|+||||||||.++++..+ +..+++++||.+|+++||+|
T Consensus 162 lCPdLiiVP~n~~kYt~~Ske~~~v~~~YDsn~~~~SlDEaylnlT~~l~~~~~g~l~~nG~~evveeiR~rV~qeTglT 241 (490)
T KOG2094|consen 162 LCPDLIIVPLNFSKYTIVSKEIQNVLAQYDSNFCAMSLDEAYLNLTSHLRERELGFLVENGITEVVEEIRFRVEQETGLT 241 (490)
T ss_pred cCCceEEeCCCcHHHHHHHHHHHHHHHHcCCccccchHHHHHHhHHHHHHHhhcchhhhccHHHHHHHHHHHHHHhcCce
Confidence 999999999999999999999999999999999999999999999999987622 26799999999999999999
Q ss_pred eEEEecCCHHHHHHHhcccCCCCeEEecCChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhchHHHHHhc
Q 005785 238 CSAGVAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVF 317 (677)
Q Consensus 238 ~S~GIA~NklLAKLaS~~~KPnGq~~l~~~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~~~L~~rF 317 (677)
||+|||+|++|||+||+.|||||||++++++.+++.||.+||||++.|||+++++.|. ++||.||||+.+....|...|
T Consensus 242 ~SaGIAaN~lLAKicSd~nKPNgQf~i~~dr~aim~F~kdLPvRkV~GIGrV~E~qLk-al~IkTcgdm~~k~~ll~~lF 320 (490)
T KOG2094|consen 242 CSAGIAANKLLAKICSDKNKPNGQFVIPNDRIAIMKFMKDLPVRKVSGIGRVTEQQLK-ALGIKTCGDMQQKLVLLSLLF 320 (490)
T ss_pred eeccccHhHHHHHHhccccCCCCceEecccHHHHHHHHhcCCcccccchhHHHHHHHH-hcCceeHHHHHHhhhHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999 599999999999999999999
Q ss_pred ChhHHHHHHHhccCCCCCCCCCCCCCcceeeeecCCccccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEcCCee
Q 005785 318 SHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEV 397 (677)
Q Consensus 318 G~~~~~~L~~~a~G~~~~~~~~~~~rKSis~e~tf~~~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~~f~~ 397 (677)
.+..++.+++.++|.+.++.+....|||||.|+||..+++...++..+++||+.|+++|+++|+.++|||||++++.|++
T Consensus 321 sp~S~~~fLr~slG~g~t~~~~~~eRKsis~ErTFs~~sd~~il~~k~qel~~~lsedlqK~glv~rtvtiKlK~ssFev 400 (490)
T KOG2094|consen 321 SPKSFQNFLRCSLGLGTTILDEDGERKSISSERTFSSTSDPSILYSKLQELCQMLSEDLQKEGLVGRTVTIKLKTSSFEV 400 (490)
T ss_pred CchhHHHHHHHhhcCCCCcCccccccccccceeeecccCCHHHHHHHHHHHHHHHHHHHHhcCcccceEEEEEeccceee
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhhCCCCEEEEEEEecCCCcCccCCCCCccccchh
Q 005785 398 RTRAVTLQKYISSSEDILKHASVLLKAELPVSLRLIGLRVTQFNEDKVRAPSDPTQKTLT 457 (677)
Q Consensus 398 ~trs~tl~~~t~~~~~L~~~a~~LLe~~lp~~VRlIGVrls~L~~~~~~~~~~~~Q~sl~ 457 (677)
.||+.++...+.+.++|+..|.+||++++|..||+||||+++|...+ .....|.++.
T Consensus 401 ~Tr~~t~s~vv~S~edi~k~aleLLk~e~~~~iRLlGvR~sqlv~ee---d~~~~~~tv~ 457 (490)
T KOG2094|consen 401 HTRQKTISQVVHSEEDILKPALELLKQEYPMTIRLLGVRASQLVSEE---DRKLAQQTVS 457 (490)
T ss_pred eeccCchhhhhccHHHHHHHHHHHHHhhcCceEeeeeeeHhhccchh---ccchhhcchh
Confidence 99999999999999999999999999999999999999999999875 3445555555
|
|
| >PTZ00205 DNA polymerase kappa; Provisional | Back alignment and domain information |
|---|
| >PRK03858 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >PRK01216 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >cd01701 PolY_Rev1 DNA polymerase Rev1 | Back alignment and domain information |
|---|
| >PRK02794 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >PRK03103 DNA polymerase IV; Reviewed | Back alignment and domain information |
|---|
| >PRK01810 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >PRK03352 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >PRK14133 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >PRK03348 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >cd01703 PolY_Pol_iota DNA Polymerase iota | Back alignment and domain information |
|---|
| >cd00424 PolY Y-family of DNA polymerases | Back alignment and domain information |
|---|
| >cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa | Back alignment and domain information |
|---|
| >PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed | Back alignment and domain information |
|---|
| >cd01702 PolY_Pol_eta DNA Polymerase eta | Back alignment and domain information |
|---|
| >PRK02406 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V | Back alignment and domain information |
|---|
| >COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd03468 PolY_like DNA Polymerase Y-family | Back alignment and domain information |
|---|
| >KOG2095 consensus DNA polymerase iota/DNA damage inducible protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF00817 IMS: impB/mucB/samB family; InterPro: IPR001126 In Escherichia coli, UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD, UmuC and RecA | Back alignment and domain information |
|---|
| >PF11799 IMS_C: impB/mucB/samB family C-terminal domain; InterPro: IPR017961 This entry represents the little finger domain found in Y-family (lesion bypass) DNA polymerases | Back alignment and domain information |
|---|
| >PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases [] | Back alignment and domain information |
|---|
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
| >PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae | Back alignment and domain information |
|---|
| >PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets | Back alignment and domain information |
|---|
| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
|---|
| >COG3743 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals | Back alignment and domain information |
|---|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 677 | ||||
| 3pzp_A | 517 | Human Dna Polymerase Kappa Extending Opposite A Cis | 2e-59 | ||
| 3pzp_A | 517 | Human Dna Polymerase Kappa Extending Opposite A Cis | 1e-47 | ||
| 2oh2_A | 508 | Ternary Complex Of Human Dna Polymerase Length = 50 | 5e-59 | ||
| 2oh2_A | 508 | Ternary Complex Of Human Dna Polymerase Length = 50 | 1e-47 | ||
| 1t94_A | 459 | Crystal Structure Of The Catalytic Core Of Human Dn | 1e-47 | ||
| 4f4w_A | 361 | Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Le | 1e-33 | ||
| 4f4y_A | 362 | Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length | 3e-33 | ||
| 1k1q_A | 354 | Crystal Structure Of A Dinb Family Error Prone Dna | 9e-33 | ||
| 4f50_A | 361 | Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length | 1e-32 | ||
| 3bq0_A | 354 | Pre-insertion Binary Complex Of Dbh Dna Polymerase | 2e-32 | ||
| 3v6k_A | 347 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 1e-31 | ||
| 3v6h_A | 348 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 2e-31 | ||
| 2ago_A | 341 | Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide | 2e-31 | ||
| 3pvx_A | 347 | Binary Complex Of Aflatoxin B1 Adduct Modified Dna | 2e-31 | ||
| 2imw_P | 348 | Mechanism Of Template-Independent Nucleotide Incorp | 2e-31 | ||
| 2rdi_A | 342 | Snapshots Of A Y-family Dna Polymerase In Replicati | 2e-31 | ||
| 3gii_A | 341 | Dpo4 Extension Ternary Complex With Disordered A Op | 2e-31 | ||
| 2uvv_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 2e-31 | ||
| 2bq3_A | 358 | Dna Adduct Bypass Polymerization By Sulfolobus Solf | 2e-31 | ||
| 1jxl_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 2e-31 | ||
| 4gc7_A | 359 | Crystal Structure Of Dpo4 In Complex With S-mc-dadp | 2e-31 | ||
| 2asd_A | 360 | Oxog-Modified Insertion Ternary Complex Length = 36 | 2e-31 | ||
| 2uvr_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 2e-31 | ||
| 3qz7_A | 360 | T-3 Ternary Complex Of Dpo4 Length = 360 | 3e-31 | ||
| 2w9b_A | 358 | Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deo | 3e-31 | ||
| 1im4_A | 221 | Crystal Structure Of A Dinb Homolog (Dbh) Lesion By | 3e-31 | ||
| 1jx4_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 6e-31 | ||
| 4f4z_B | 361 | Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Lengt | 8e-31 | ||
| 3pr4_A | 341 | Dpo4 Y12a Mutant Incorporating Dadp Opposite Templa | 2e-30 | ||
| 3h40_A | 389 | Binary Complex Of Human Dna Polymerase Iota With Te | 1e-28 | ||
| 1t3n_A | 388 | Structure Of The Catalytic Core Of Dna Polymerase I | 1e-28 | ||
| 2alz_A | 390 | Ternary Complex Of Hpoli With Dna And Dctp Length = | 2e-28 | ||
| 2dpi_A | 420 | Ternary Complex Of Hpoli With Dna And Dctp Length = | 2e-28 | ||
| 4dez_A | 356 | Structure Of Msdpo4 Length = 356 | 3e-28 | ||
| 3gv5_B | 420 | Human Dna Polymerase Iota In Complex With T Templat | 4e-27 | ||
| 3gqc_A | 504 | Structure Of Human Rev1-Dna-Dntp Ternary Complex Le | 6e-19 | ||
| 3mr6_A | 435 | Human Dna Polymerase Eta - Dna Ternary Complex With | 2e-12 | ||
| 3mr6_A | 435 | Human Dna Polymerase Eta - Dna Ternary Complex With | 7e-10 | ||
| 3mr2_A | 435 | Human Dna Polymerase Eta In Complex With Normal Dna | 2e-12 | ||
| 3mr2_A | 435 | Human Dna Polymerase Eta In Complex With Normal Dna | 6e-10 | ||
| 2aq4_A | 434 | Ternary Complex Of The Catalytic Core Of Rev1 With | 2e-09 |
| >pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn Thymine Dimer Length = 517 | Back alignment and structure |
|
| >pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn Thymine Dimer Length = 517 | Back alignment and structure |
| >pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase Length = 508 | Back alignment and structure |
| >pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase Length = 508 | Back alignment and structure |
| >pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna Polymerase Kappa Length = 459 | Back alignment and structure |
| >pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Length = 361 | Back alignment and structure |
| >pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length = 362 | Back alignment and structure |
| >pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna Polymerase From Sulfolobus Solfataricus Length = 354 | Back alignment and structure |
| >pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length = 361 | Back alignment and structure |
| >pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase Length = 354 | Back alignment and structure |
| >pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 347 | Back alignment and structure |
| >pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 348 | Back alignment and structure |
| >pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide Selection And Pyrophosphorolysis Length = 341 | Back alignment and structure |
| >pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna (Afb1-Fapy) With Dna Polymerase Iv Length = 347 | Back alignment and structure |
| >pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation Catalyzed By A Template-Dependent Dna Polymerase Length = 348 | Back alignment and structure |
| >pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication: Dpo4 In Apo And Binary/ternary Complex Forms Length = 342 | Back alignment and structure |
| >pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite An Oxog In Anti Conformation Length = 341 | Back alignment and structure |
| >pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus Solfataricus Dpo4. Analysis And Crystal Structures Of Multiple Base- Pair Substitution And Frameshift Products With The Adduct 1,N2-Ethenoguanine Length = 358 | Back alignment and structure |
| >pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp Opposite Dt Length = 359 | Back alignment and structure |
| >pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex Length = 360 | Back alignment and structure |
| >pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4 Length = 360 | Back alignment and structure |
| >pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deoxyguanosine Modified Dna Length = 358 | Back alignment and structure |
| >pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass Dna Polymerase Catalytic Fragment From Sulfolobus Solfataricus Length = 221 | Back alignment and structure |
| >pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|4F4Z|B Chain B, Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Length = 361 | Back alignment and structure |
| >pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt Length = 341 | Back alignment and structure |
| >pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template UT Length = 389 | Back alignment and structure |
| >pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In Complex With Dna And Dttp Length = 388 | Back alignment and structure |
| >pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 390 | Back alignment and structure |
| >pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 420 | Back alignment and structure |
| >pdb|4DEZ|A Chain A, Structure Of Msdpo4 Length = 356 | Back alignment and structure |
| >pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna And Incoming Ddadp Length = 420 | Back alignment and structure |
| >pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex Length = 504 | Back alignment and structure |
| >pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd 2bp Upstream Of The Active Site (Tt4) Length = 435 | Back alignment and structure |
| >pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd 2bp Upstream Of The Active Site (Tt4) Length = 435 | Back alignment and structure |
| >pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And Incoming Nucleotide (Nrm) Length = 435 | Back alignment and structure |
| >pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And Incoming Nucleotide (Nrm) Length = 435 | Back alignment and structure |
| >pdb|2AQ4|A Chain A, Ternary Complex Of The Catalytic Core Of Rev1 With Dna And Dctp. Length = 434 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} Length = 517 | Back alignment and structure |
|---|
Score = 470 bits (1210), Expect = e-160
Identities = 191/513 (37%), Positives = 279/513 (54%), Gaps = 82/513 (15%)
Query: 17 PWQSYHTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCA 76
P H + KAGM+G+DKEK+ K++ E +KGS+++ NE +KE + Q+IE+M + A
Sbjct: 2 PGGDPHMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKA 61
Query: 77 KLTSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGT 136
++TS + Q D+ +ELE +R+LS + +H+DMDAFYAAVE NP LK KP+AVG+
Sbjct: 62 QITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGS 121
Query: 137 MSMICTANYEARRFGVRAAMPG-------------------------------------F 159
MSM+ T+NY ARRFGVRAAMPG F
Sbjct: 122 MSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNF 181
Query: 160 IARKLCPELIFVPTDFTKYTYYSDLTRKVFCK-------------------YDPNFMAAS 200
+A L + + + + + R+ F K ++ +
Sbjct: 182 MAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLL 241
Query: 201 LDEAYLDITEVCRE-------------------RGISGIEIAEELRTSVYEEAGLTCSAG 241
+E+ D+ G S E+ +E+R + ++ LT SAG
Sbjct: 242 FEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAG 301
Query: 242 VAPNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGIN 301
+APN +LAKVCSD NKPNGQ+ + +R AVM FI LPIRK+ GIGKVTE +L+ GI
Sbjct: 302 IAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGII 360
Query: 302 TCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSISSERTFSVTEDKALL 361
TC E+ Q+ +LL +FS ++ +FL + LGLGST+ + RKS+S ERTFS
Sbjct: 361 TCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFSEINKAEEQ 420
Query: 362 YRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVL 421
Y E+ L+ D+QKE L+GRT+T+KLK +FEV+TRA T+ +S++E+I A L
Sbjct: 421 YSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKEL 480
Query: 422 LKAEL------PVSLRLIGLRVTQFNEDKVRAP 448
LK E+ P+ LRL+G+R++ F ++ R
Sbjct: 481 LKTEIDADFPHPLRLRLMGVRISSFPNEEDRKH 513
|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Length = 459 | Back alignment and structure |
|---|
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A* ... Length = 420 | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A Length = 354 | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... Length = 352 | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* Length = 434 | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Length = 221 | Back alignment and structure |
|---|
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... Length = 435 | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* Length = 520 | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* Length = 520 | Back alignment and structure |
|---|
| >1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1 Length = 115 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| 3pzp_A | 517 | DNA polymerase kappa; DNA nucleotidyltransferase, | 100.0 | |
| 1t94_A | 459 | Polymerase (DNA directed) kappa; replication, DNA | 100.0 | |
| 3gqc_A | 504 | DNA repair protein REV1; protein-DNA complex, DNA | 100.0 | |
| 1jx4_A | 352 | DNA polymerase IV (family Y); protein-DNA complex, | 100.0 | |
| 4dez_A | 356 | POL IV 1, DNA polymerase IV 1; Y-family, transfera | 100.0 | |
| 3bq0_A | 354 | POL IV, DBH, DNA polymerase IV; Y-family, lesion b | 100.0 | |
| 4f4y_A | 362 | POL IV, DNA polymerase IV; Y-family polymerase, tr | 100.0 | |
| 3osn_A | 420 | DNA polymerase IOTA; hoogsteen base PAIR, protein- | 100.0 | |
| 2aq4_A | 434 | DNA repair protein REV1; polymerase, PAD, N-digit, | 100.0 | |
| 4ecq_A | 435 | DNA polymerase ETA; transferase-DNA complex; HET: | 100.0 | |
| 3mfi_A | 520 | DNA polymerase ETA; DNA damage, DNA repair, DNA re | 100.0 | |
| 1im4_A | 221 | DBH; DNA polymerase PALM, thumb, fingers, helix-ha | 100.0 | |
| 1unn_C | 115 | POL IV, DNA polymerase IV; beta-clamp, translesion | 99.38 | |
| 2i5o_A | 39 | DNA polymerase ETA; zinc finger, DNA polymerase,PO | 98.95 | |
| 3mab_A | 93 | Uncharacterized protein; NYSGXRC, PSI-2, structura | 94.22 | |
| 3bqs_A | 93 | Uncharacterized protein; 10114F, NYSGXRC, PSI-2, s | 94.02 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 93.23 | |
| 1z3e_B | 73 | DNA-directed RNA polymerase alpha chain; bacterial | 89.29 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 84.27 | |
| 1qw2_A | 102 | Conserved hypothetical protein TA1206; structural | 84.17 | |
| 3gfk_B | 79 | DNA-directed RNA polymerase subunit alpha; protein | 83.04 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 82.99 | |
| 3k4g_A | 86 | DNA-directed RNA polymerase subunit alpha; bacteri | 82.59 | |
| 1ci4_A | 89 | Protein (barrier-TO-autointegration factor (BAF) ) | 81.63 |
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-103 Score=886.62 Aligned_cols=422 Identities=50% Similarity=0.811 Sum_probs=399.8
Q ss_pred ceecccccCCCCCcCHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHhhcc
Q 005785 22 HTVYTNAKAGMDGVDKEKVQKVVYEMSKGSKYFENEERKEAFIQQKIEHMRARCAKLTSPVISHYQKVADKRILELEATR 101 (677)
Q Consensus 22 ~~~~~~~kag~~~~d~~~i~~ii~~~skgs~~~~~e~~~~~~~~~ri~~~~~~~~~l~~~~~~~~~~~~d~~~~~le~~r 101 (677)
...++++||||+||||+|||+||||+||||+||+||+||++++++||++|+++++++++.++.+++..+|+++++||++|
T Consensus 7 ~~~~~~~kag~~~~d~~~i~~ii~~~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r 86 (517)
T 3pzp_A 7 HMGLNDNKAGMEGLDKEKINKIIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSR 86 (517)
T ss_dssp -------CCSCCSCCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCccccccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCchhhhcccccCCCCCCCcEEEecCCeEEecCHHHHHcCCCCCCcHHHHHHhCCCcEEeCCChHHHHHH
Q 005785 102 DLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARKLCPELIFVPTDFTKYTYY 181 (677)
Q Consensus 102 d~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~~~V~taNY~ARk~GVr~GMp~~~AkkLCP~Lvvvp~d~~~Y~~~ 181 (677)
|++|+|+||||||||||||++++|+|+++||||+++++|+||||+||+|||++|||+++|++|||+|++||+||+.|+++
T Consensus 87 ~~~r~I~hiDmDaFYAsvE~~~~P~Lr~kPvaV~~~~vV~t~nYeAR~~GVr~gMp~~~Ak~lCP~Lvvv~~d~~~Y~~~ 166 (517)
T 3pzp_A 87 NLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAV 166 (517)
T ss_dssp CCSCCEEEEEESSHHHHHHHHHCGGGTTSCEEEEETTEEEEECHHHHTTTCCTTSCHHHHHHHCTTCEEECCCHHHHHHH
T ss_pred CcCcEEEEEecCcHHHHHHHHhCccccCCcEEEecCCEEEecCHHHHHcCCCCCCcHHHHHHhCCceEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEeccCceEEecchhh-------------------------------------------------
Q 005785 182 SDLTRKVFCKYDPNFMAASLDEAYLDITEVC------------------------------------------------- 212 (677)
Q Consensus 182 s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~------------------------------------------------- 212 (677)
|.+|+.||.+|+|+||++||||+|||||+++
T Consensus 167 S~~v~~il~~ytp~ve~~SiDEafLDvT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (517)
T 3pzp_A 167 SKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESP 246 (517)
T ss_dssp HHHHHHHHHTTCTTCBCCSSSEEEEETHHHHHHHTSCCSTTTEEECC---------------------------------
T ss_pred HHHHHHHHHHcCCcEEEECCceEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999985
Q ss_pred --------------------------hhcCCCHHHHHHHHHHHHHHHhCCeeEEEecCCHHHHHHHhcccCCCCeEEecC
Q 005785 213 --------------------------RERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLAKVCSDINKPNGQFVLPN 266 (677)
Q Consensus 213 --------------------------~~~g~~~~~la~~IR~~I~~~tGlt~S~GIA~NklLAKLaS~~~KPnGq~~l~~ 266 (677)
++||.++.++|++||++|+++||||||||||+||+||||||+++||||++++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~ia~~IR~~I~~~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~ 326 (517)
T 3pzp_A 247 SDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILP 326 (517)
T ss_dssp -----------------------CCEEECCSSHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCS
T ss_pred ccccccccccccccccccccccchhhhhcCChHHHHHHHHHHHHHHHhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecC
Confidence 345646899999999999999999999999999999999999999999999998
Q ss_pred ChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhchHHHHHhcChhHHHHHHHhccCCCCCCCCCCCCCcce
Q 005785 267 DRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTADFFLSVGLGLGSTNTPQARFRKSI 346 (677)
Q Consensus 267 ~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~~~L~~rFG~~~~~~L~~~a~G~~~~~~~~~~~rKSi 346 (677)
+++++.+||++|||++|||||++++++|++ +||+||+||++++..|.++||...+.+++.+|+|++..++.+..++|||
T Consensus 327 ~~~~v~~fL~~LPV~kl~GIG~~t~~~L~~-lGI~TigDL~~~~~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi 405 (517)
T 3pzp_A 327 NRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTELYQQRALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSM 405 (517)
T ss_dssp SHHHHHHHHTTCBGGGSTTCCHHHHHHHHH-TTCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCE
T ss_pred ChHHHHHHHhcCChhhhccccHHHHHHHHH-hCCCcHHHHHhhHHHHHHHhChHHHHHHHHHHcCCCcccccCCCCCccc
Confidence 777899999999999999999999999996 9999999999998889999999888888889999999998888899999
Q ss_pred eeeecCCccccHHHHHHHHHHHHHHHHHHHHHhCCcccEEEEEEEEcCCeeeEEEEEcCCCCCCHHHHHHHHHHHHHhhC
Q 005785 347 SSERTFSVTEDKALLYRKLAEIAEMLSADMQKEGLRGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHASVLLKAEL 426 (677)
Q Consensus 347 s~e~tf~~~~d~~~L~~~L~~La~~L~~rLr~~~l~~rtltLklk~~~f~~~trs~tl~~~t~~~~~L~~~a~~LLe~~l 426 (677)
+.++||+.+.+.+++...|.+|+++|+.+|+++++.+++|+|++++.+|.+.+++++++.|+++.++|+.+|..||++.+
T Consensus 406 ~~e~tf~~~~~~e~l~~~l~~La~~l~~rLr~~~~~~~~vtlklk~~~f~~~tr~~tl~~~t~~~~~i~~~a~~Ll~~~~ 485 (517)
T 3pzp_A 406 SVERTFSEINKAEEQYSLCQELCSELAQDLQKERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEI 485 (517)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHHHHHHHTTTCCBSCEEEEEEETTSCEEEECCCCSSCBCSHHHHHHHHHHHHHHHH
T ss_pred eeEEEcccccCHHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEEEecCCceeeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred ------CCCEEEEEEEecCCCcCc
Q 005785 427 ------PVSLRLIGLRVTQFNEDK 444 (677)
Q Consensus 427 ------p~~VRlIGVrls~L~~~~ 444 (677)
|.+||+|||++++|.+..
T Consensus 486 ~~~~~~~~~iRllGV~~s~l~~~~ 509 (517)
T 3pzp_A 486 DADFPHPLRLRLMGVRISSFPNEE 509 (517)
T ss_dssp HHHTTSCCCEEEEEEEECCCCCCC
T ss_pred hhccCCCCcEEEEEEEecCCcChh
Confidence 456999999999999875
|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... | Back alignment and structure |
|---|
| >4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A | Back alignment and structure |
|---|
| >4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A | Back alignment and structure |
|---|
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ... | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* | Back alignment and structure |
|---|
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 | Back alignment and structure |
|---|
| >1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1 | Back alignment and structure |
|---|
| >2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A | Back alignment and structure |
|---|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
| >1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1 | Back alignment and structure |
|---|
| >3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1 | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D | Back alignment and structure |
|---|
| >1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 677 | ||||
| d1zeta2 | 273 | e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom | 2e-49 | |
| d1t94a2 | 333 | e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Ho | 1e-45 | |
| d1t94a2 | 333 | e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Ho | 4e-27 | |
| d1im4a_ | 209 | e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolob | 1e-43 | |
| d1jiha2 | 389 | e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeas | 4e-35 | |
| d1jiha2 | 389 | e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeas | 3e-19 | |
| d1jx4a2 | 240 | e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul | 2e-32 | |
| d1t94a1 | 105 | d.240.1.1 (A:411-515) DNA polymerase kappa {Human | 9e-22 | |
| d1zeta1 | 115 | d.240.1.1 (A:300-414) DNA polymerase iota {Human ( | 3e-18 | |
| d1jx4a1 | 101 | d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon | 2e-13 | |
| d1unnc_ | 111 | d.240.1.1 (C:) DNA polymerase IV {Escherichia coli | 2e-13 | |
| d1k1sa1 | 105 | d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon | 5e-13 | |
| d1jiha1 | 120 | d.240.1.1 (A:390-509) DNA polymerase eta {Baker's | 7e-10 |
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase iota species: Human (Homo sapiens) [TaxId: 9606]
Score = 172 bits (436), Expect = 2e-49
Identities = 84/255 (32%), Positives = 120/255 (47%), Gaps = 39/255 (15%)
Query: 104 SRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPGFIARK 163
SR +HVD+D FYA VE +SNP LK KP+ V ++ T NYEAR+ GV+ M A++
Sbjct: 1 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKE 60
Query: 164 LCPELIFV-PTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITE------------ 210
CP+L+ V D T+Y S ++ ++ P DE ++D+TE
Sbjct: 61 KCPQLVLVNGEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSD 120
Query: 211 ---------------------VCRERGISGIEIAEELRTSVYEEAGLTCSAGVAPNRLLA 249
V R + G +IA E+R ++Y + GLT AGVA N+LLA
Sbjct: 121 ELSAVTVSGHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLA 180
Query: 250 KVCSDINKPNGQFVLPNDRMAVMTFISSL-PIRKIGGIGKVTEHILRDVFGINTCEEMLQ 308
K+ S + KPN Q + I SL I++I GIG T L GIN+ ++
Sbjct: 181 KLVSGVFKPNQQT--VLLPESCQHLIHSLNHIKEIPGIGYKTAKCLEA-LGINSVRDLQT 237
Query: 309 KG-SLLCAVFSHSTA 322
+L S A
Sbjct: 238 FSPKILEKELGISVA 252
|
| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 | Back information, alignment and structure |
|---|
| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 | Back information, alignment and structure |
|---|
| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 209 | Back information, alignment and structure |
|---|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 | Back information, alignment and structure |
|---|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 | Back information, alignment and structure |
|---|
| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240 | Back information, alignment and structure |
|---|
| >d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
| >d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
| >d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 101 | Back information, alignment and structure |
|---|
| >d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]} Length = 111 | Back information, alignment and structure |
|---|
| >d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 105 | Back information, alignment and structure |
|---|
| >d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 120 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 677 | |||
| d1t94a2 | 333 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1zeta2 | 273 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1jx4a2 | 240 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 100.0 | |
| d1im4a_ | 209 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 100.0 | |
| d1jiha2 | 389 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 100.0 | |
| d1t94a1 | 105 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 99.61 | |
| d1jx4a1 | 101 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 99.55 | |
| d1k1sa1 | 105 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 99.49 | |
| d1unnc_ | 111 | DNA polymerase IV {Escherichia coli [TaxId: 562]} | 99.46 | |
| d1zeta1 | 115 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 99.31 | |
| d1jiha1 | 120 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 99.13 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 95.84 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 94.08 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 93.17 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 92.74 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 92.69 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 91.88 | |
| d1a1ia3 | 28 | ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | 90.24 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 89.85 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 89.29 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 88.7 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 87.74 | |
| d1doqa_ | 69 | C-terminal domain of RNA polymerase alpha subunit | 85.83 | |
| d1qw2a_ | 102 | Hypothetical protein Ta1206 {Archaeon Thermoplasma | 83.25 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 82.23 | |
| d1z3eb1 | 67 | C-terminal domain of RNA polymerase alpha subunit | 80.51 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 80.47 |
| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-67 Score=560.06 Aligned_cols=257 Identities=56% Similarity=0.916 Sum_probs=243.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhccCCCCeEEEEeCCchhhhcccccCCCCCCCcEEEecCCeEEecCHHHHHcCCCCCCcH
Q 005785 79 TSPVISHYQKVADKRILELEATRDLSRSWLHVDMDAFYAAVETLSNPSLKGKPMAVGTMSMICTANYEARRFGVRAAMPG 158 (677)
Q Consensus 79 ~~~~~~~~~~~~d~~~~~le~~rd~~r~I~HIDmDaFyAsVE~~~~PeLr~kPvAV~~~~~V~taNY~ARk~GVr~GMp~ 158 (677)
|+.++.+.+..+|+.+++++.+|+++|+|+||||||||||||++++|+|+++||||+++++|+||||+||+|||++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~r~~~RvI~HiDmDaFyAsvE~~~~P~l~~kPlaV~~~~~via~nY~AR~~GVk~gm~i 80 (333)
T d1t94a2 1 TSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPG 80 (333)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTCCCSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEECSSCEEEECHHHHHTTCCTTCCH
T ss_pred CHHHHHHHHHhHHHHHhhhhhccCCCCeEEEEccCchHHhhhhhhCccccCCcEEEecCCEEEECCHHHHHhCCCCCCcH
Confidence 35677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEeCCChHHHHHHHHHHHHHHHhcCCceEEeccCceEEecchhhhhc-----------------------
Q 005785 159 FIARKLCPELIFVPTDFTKYTYYSDLTRKVFCKYDPNFMAASLDEAYLDITEVCRER----------------------- 215 (677)
Q Consensus 159 ~~AkkLCP~Lvvvp~d~~~Y~~~s~~i~~il~~y~p~ve~~SiDEa~LDlT~~~~~~----------------------- 215 (677)
++|+++||+|+++++|++.|+.+|.+++.+|.+|+|.||.+||||+|||+|++++.+
T Consensus 81 ~eA~~lCP~lii~~~d~~~Yr~~S~~i~~il~~~~~~vE~~SIDE~flDlT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (333)
T d1t94a2 81 FIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNP 160 (333)
T ss_dssp HHHHHHCTTCEEECCCHHHHHHHHHHHHHHHHHHCTTCEECSSSEEEEECHHHHHHHTTCCGGGSEEECCC---CCCCCC
T ss_pred HHHHHhCCCcEEEcCcHHHHHHHHHHHHHHHHHcCCCEEEEeccEEEEecchhhhhhcccccchhhhhcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999866421
Q ss_pred ----------------------------------------------------CCCHHHHHHHHHHHHHHHhCCeeEEEec
Q 005785 216 ----------------------------------------------------GISGIEIAEELRTSVYEEAGLTCSAGVA 243 (677)
Q Consensus 216 ----------------------------------------------------g~~~~~la~~IR~~I~~~tGlt~S~GIA 243 (677)
+..+.++|.+||++|+++||||||+|||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~la~~IR~~I~~etG~t~SaGIa 240 (333)
T d1t94a2 161 GKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEVVKEIRFRIEQKTTLTASAGIA 240 (333)
T ss_dssp CGGGGGGSTTTTTTGGGCC----------------------CCCCCCCEEECCSSHHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhccccHHHHHHHHHHHHHHHhCCCeEEeEC
Confidence 2246789999999999999999999999
Q ss_pred CCHHHHHHHhcccCCCCeEEecCChhHHHHhhhcCCCccccCCCHHHHHHHHhhcCCCcHHHHHhchHHHHHhcChhHHH
Q 005785 244 PNRLLAKVCSDINKPNGQFVLPNDRMAVMTFISSLPIRKIGGIGKVTEHILRDVFGINTCEEMLQKGSLLCAVFSHSTAD 323 (677)
Q Consensus 244 ~NklLAKLaS~~~KPnGq~~l~~~~~~i~~fL~~LPV~kLpGIG~~t~~~L~~~lGI~T~gDL~~~~~~L~~rFG~~~~~ 323 (677)
+||+|||||++++|||||+++.++.+++.+||+++||++|||||++++++|+. +||+||+||++.+..|.+.||+..+.
T Consensus 241 ~NK~LAKLAs~~~KPngq~~i~~~~~~~~~~l~~lpi~~i~GiG~~~~~~L~~-~gi~ti~dl~~~~~~l~~~fG~~~g~ 319 (333)
T d1t94a2 241 PNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKA-LGIITCTELYQQRALLSLLFSETSWH 319 (333)
T ss_dssp SSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHHHH-TTCCBHHHHHHTHHHHHHHSCHHHHH
T ss_pred ccHHHHHHHHHhcCcCccceecCCHHHHHHHHhCCCccccCCcCHHHHHHHHH-cCCcCHHHHhcCHHHHHHHhCHHHHH
Confidence 99999999999999999999988877899999999999999999999999996 99999999999888899999999999
Q ss_pred HHHHhccCCCCCC
Q 005785 324 FFLSVGLGLGSTN 336 (677)
Q Consensus 324 ~L~~~a~G~~~~~ 336 (677)
||+..++|++.+.
T Consensus 320 ~l~~~a~GID~~~ 332 (333)
T d1t94a2 320 YFLHISLGLGSTH 332 (333)
T ss_dssp HHHHHHTTCCCSC
T ss_pred HHHHHhcCCCCCC
Confidence 9999999999765
|
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1qw2a_ d.249.1.1 (A:) Hypothetical protein Ta1206 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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