Citrus Sinensis ID: 005802
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 676 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LHN5 | 678 | Putative pentatricopeptid | yes | no | 0.985 | 0.982 | 0.549 | 0.0 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.914 | 0.886 | 0.362 | 1e-117 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.973 | 0.837 | 0.345 | 1e-108 | |
| Q9FWA6 | 903 | Pentatricopeptide repeat- | no | no | 0.810 | 0.606 | 0.341 | 6e-96 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.890 | 0.770 | 0.321 | 2e-93 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.908 | 0.826 | 0.299 | 2e-92 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.847 | 0.680 | 0.320 | 9e-92 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.863 | 0.687 | 0.319 | 6e-90 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.795 | 0.632 | 0.311 | 1e-88 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.983 | 0.841 | 0.308 | 1e-88 |
| >sp|Q9LHN5|PP242_ARATH Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/670 (54%), Positives = 490/670 (73%), Gaps = 4/670 (0%)
Query: 6 LKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISA 65
LK+ + H+++IK+G TLT +++NQL+++YSK LLRE+R +FDEM ERNV+SWN +I+A
Sbjct: 4 LKDGFLHHIRSIKSGSTLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAA 63
Query: 66 CIKSHDLKQARSLFDSSP-HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSAD-EHIRM 123
+K +++K+AR LF+S +DL+TYN++L G+ +G E++A+++F EM + + I +
Sbjct: 64 YVKFNNVKEARELFESDNCERDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWI 123
Query: 124 DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVF 183
D+FTVT+ + L KL NV +G QLH +VKT ND + FAVSSLI MYSKC ++E C +F
Sbjct: 124 DDFTVTTMVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIF 183
Query: 184 EG-CTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEE 242
G C E V+ +++NAM+AA CREG+++ AL FWR PELND +SWNTLI+GY QNG EE
Sbjct: 184 NGSCVEFVDSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEE 243
Query: 243 GLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVD 302
LK+ V M ENG++W+EH+F + L+ L+++K KE+H+ VLKNG SN FVSSGIVD
Sbjct: 244 ALKMAVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVD 303
Query: 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTAL 362
VYCKC NM YAES LL G N +S SSMIVGYS QG M EA+R FDSL+EKN+VVWTA+
Sbjct: 304 VYCKCGNMKYAESAHLLYGFGNLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAM 363
Query: 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMG 422
F GY+ + +++ +L F+ E D+L++V +LGAC+LQA + PGKEIH + LR G
Sbjct: 364 FLGYLNLRQPDSVLELARAFIANETNTPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTG 423
Query: 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFE 482
+ MDKKL++ VDMYSKCGN+ YAE IF + ERD V+YN MIA AHHGHE K+ FE
Sbjct: 424 ILMDKKLVTAFVDMYSKCGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFE 483
Query: 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542
+M E G KPD +TF+A+LSA RH G V GEKYF SM Y ISPET HY CMIDLYG+A
Sbjct: 484 DMTEGGFKPDEITFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGKA 543
Query: 543 NQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601
+L+KAIE M+ I E+DAVILG+FLN C N+N EL E EEKLL +EG+N +RY+Q+
Sbjct: 544 YRLDKAIELMEGIDQVEKDAVILGAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQI 603
Query: 602 ANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL 661
AN YA+ G W EM RIR QMRG + F+GCSW ++ + H+FT D+SH +T AIY++L
Sbjct: 604 ANAYASSGRWDEMQRIRHQMRGKELEIFSGCSWANIDKQFHMFTSSDISHYETEAIYAML 663
Query: 662 AIFTGELYEI 671
T +L EI
Sbjct: 664 HFVTKDLSEI 673
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/664 (36%), Positives = 367/664 (55%), Gaps = 46/664 (6%)
Query: 13 HVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDL 72
H IK+G + N+LI YSK L + R++FD+MP+RN+++WN++++ K L
Sbjct: 43 HASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFL 102
Query: 73 KQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTL 132
+A SLF S P +D T+NSM+ G+ + E +AL F M E ++E++ S L
Sbjct: 103 DEADSLFRSMPERDQCTWNSMVSGFAQHDRCE-EALCYFAMMHK--EGFVLNEYSFASVL 159
Query: 133 NLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNL 192
+ C L ++ G Q+H+ + K+ + + S+L+DMYSKC +A RVF+
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFD-------- 211
Query: 193 ISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGE 252
EM + + VSWN+LI+ + QNG A E L +F M E
Sbjct: 212 ----------------EMGDR---------NVVSWNSLITCFEQNGPAVEALDVFQMMLE 246
Query: 253 NGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFV-SSGIVDVYCKCENMN 311
+ V +E T AS +SAC L +K +E+H V+KN + N + S+ VD+Y KC +
Sbjct: 247 SRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIK 306
Query: 312 YAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVK-AQ 370
A + +RN + +SMI GY++ + + AR F + E+NVV W AL +GY + +
Sbjct: 307 EARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGE 366
Query: 371 NCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQM----- 425
N EAL L + +E V +L ACA A LH G + H ++L+ G +
Sbjct: 367 NEEALS--LFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEE 424
Query: 426 -DKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEM 484
D + ++L+DMY KCG + ++F+ +ERD V +N MI +A +G+ +A+ LF EM
Sbjct: 425 DDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREM 484
Query: 485 LEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ 544
LE G KPD +T + +LSA H G VE G YF+SMT D+ ++P DHY CM+DL GRA
Sbjct: 485 LESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGF 544
Query: 545 LEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604
LE+A ++ +P + D+VI GS L C+++RN L EKLL +E +N YV L+N+
Sbjct: 545 LEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNM 604
Query: 605 YAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIF 664
YA G W ++ +RK MR + GCSW+ ++ H+F V D SHP+ I+S+L I
Sbjct: 605 YAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDIL 664
Query: 665 TGEL 668
E+
Sbjct: 665 IAEM 668
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/668 (34%), Positives = 368/668 (55%), Gaps = 10/668 (1%)
Query: 9 ALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIK 68
A + H + IK+GL + N L+++YSK +RKLFDEMP R FSWNT++SA K
Sbjct: 33 AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92
Query: 69 SHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTV 128
D+ FD P +D V++ +M+ GY N Y A+++ +M E I +FT+
Sbjct: 93 RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHK-AIRVMGDM--VKEGIEPTQFTL 149
Query: 129 TSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE 188
T+ L + G+++H+F+VK + +SL++MY+KC A VF+
Sbjct: 150 TNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVV 209
Query: 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFV 248
++ S NAM+A + G+M++A+ F + E D V+WN++ISG+ Q G L +F
Sbjct: 210 R-DISSWNAMIALHMQVGQMDLAMAQFEQMAE-RDIVTWNSMISGFNQRGYDLRALDIFS 267
Query: 249 RMGENGV-RWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKC 307
+M + + + T AS LSAC L + K+IHS ++ G + V + ++ +Y +C
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC 327
Query: 308 ENMNYAESMLLLKGVRNSF--SISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSG 365
+ A ++ +G ++ ++++ GY G+M +A+ F SL +++VV WTA+ G
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVG 387
Query: 366 YVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQM 425
Y + + +L V G ++ L +L + A+L GK+IH ++ G
Sbjct: 388 YEQHGSYGEAINLFRSMVGG-GQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIY 446
Query: 426 DKKLISTLVDMYSKCGNMTYAEIIFQNF-IERDLVLYNVMIACYAHHGHEEKAILLFEEM 484
+ + L+ MY+K GN+T A F ERD V + MI A HGH E+A+ LFE M
Sbjct: 447 SVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506
Query: 485 LEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ 544
L +G++PD +T+V + SA H G V G +YF+ M KI P HYACM+DL+GRA
Sbjct: 507 LMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGL 566
Query: 545 LEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604
L++A EF++ +P E D V GS L+ CR+++N +L A E+LL LE N Y LAN+
Sbjct: 567 LQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANL 626
Query: 605 YAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIF 664
Y+A G W E +IRK M+ + + G SW+ V+H++H+F V D +HP+ N IY +
Sbjct: 627 YSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKI 686
Query: 665 TGELYEIA 672
E+ ++
Sbjct: 687 WDEIKKMG 694
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 207/606 (34%), Positives = 329/606 (54%), Gaps = 58/606 (9%)
Query: 68 KSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAE-GYEADALKLFIEMQSADEHIRMDEF 126
K +++ A+ LFD+S + + +YN+M+ GY E G++A L LF + S+ + DE
Sbjct: 328 KCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKA--LLLFHRLMSSG--LGFDEI 383
Query: 127 TVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGC 186
+++ C + + G Q++ +K+S ++ IDMY KC+ EA RVF+
Sbjct: 384 SLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFD-- 441
Query: 187 TEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKL 246
EM + DAVSWN +I+ + QNG E L L
Sbjct: 442 ----------------------EMRRR---------DAVSWNAIIAAHEQNGKGYETLFL 470
Query: 247 FVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCK 306
FV M + + +E TF S L AC G ++ EIHS ++K+G+ SN V ++D+Y K
Sbjct: 471 FVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 529
Query: 307 CENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGY 366
C + AE + S ++ G MEE + + ++ V W ++ SGY
Sbjct: 530 CGMIEEAEKIH-----------SRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGY 578
Query: 367 V---KAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGV 423
V ++++ + LF + E G+ D +L CA A+ GK+IHA +++ +
Sbjct: 579 VMKEQSEDAQMLFTRMMEM----GITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKEL 634
Query: 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEE 483
Q D + STLVDMYSKCG++ + ++F+ + RD V +N MI YAHHG E+AI LFE
Sbjct: 635 QSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFER 694
Query: 484 MLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRAN 543
M+ + IKP+ VTF++IL A H G ++ G +YF M DY + P+ HY+ M+D+ G++
Sbjct: 695 MILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSG 754
Query: 544 QLEKAIEFMKSIPTEEDAVILGSFLNVCRLNR-NAELAGEAEEKLLRLEGNNKARYVQLA 602
++++A+E ++ +P E D VI + L VC ++R N E+A EA LLRL+ + + Y L+
Sbjct: 755 KVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLS 814
Query: 603 NVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLA 662
NVYA G W ++ +R+ MRG K + GCSWV ++ E+H+F VGD +HP+ IY L
Sbjct: 815 NVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELG 874
Query: 663 IFTGEL 668
+ E+
Sbjct: 875 LIYSEM 880
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 213/663 (32%), Positives = 349/663 (52%), Gaps = 61/663 (9%)
Query: 1 MRSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWN 60
MR+ EAL + K ++++ N +I Y ++ +RKLFDEMPER++ SWN
Sbjct: 75 MRTGRCNEAL----RVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWN 130
Query: 61 TIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEH 120
+I +++ +L +AR LF+ P +D+ ++N+ML GY
Sbjct: 131 VMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQ--------------------- 169
Query: 121 IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEAC 180
N CV F R + ND S ++L+ Y + EEAC
Sbjct: 170 ------------NGCVDDARSVFDR------MPEKNDVS---WNALLSAYVQNSKMEEAC 208
Query: 181 RVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDA 240
+F+ E L+S N ++ ++ ++ A + F+ + D VSWNT+I+GY Q+G
Sbjct: 209 MLFKS-RENWALVSWNCLLGGFVKKKKIVEA-RQFFDSMNVRDVVSWNTIITGYAQSGKI 266
Query: 241 EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGI 300
+E +LF E+ V+ + T+ + +S R V+ A+E+ + + +S + +G
Sbjct: 267 DEARQLF---DESPVQ-DVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAG- 321
Query: 301 VDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWT 360
Y + E M A+ + + RN + ++MI GY+ G + EA+ FD + +++ V W
Sbjct: 322 ---YVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWA 378
Query: 361 ALFSGYVKAQNCEALFDLLSEFVT--KEGVVTDALILVILLGACALQAALHPGKEIHAYI 418
A+ +GY ++ + F+ L FV +EG + L CA AL GK++H +
Sbjct: 379 AMIAGYSQSGHS---FEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL 435
Query: 419 LRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAI 478
++ G + + + L+ MY KCG++ A +F+ +D+V +N MIA Y+ HG E A+
Sbjct: 436 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVAL 495
Query: 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538
FE M +G+KPD T VA+LSA H G V+ G +YF +MT DY + P + HYACM+DL
Sbjct: 496 RFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDL 555
Query: 539 YGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598
GRA LE A MK++P E DA I G+ L R++ N ELA A +K+ +E N Y
Sbjct: 556 LGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMY 615
Query: 599 VQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIY 658
V L+N+YA+ G W ++G++R +MR + G SW+ ++++ H F+VGD HP+ + I+
Sbjct: 616 VLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIF 675
Query: 659 SVL 661
+ L
Sbjct: 676 AFL 678
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 195/651 (29%), Positives = 339/651 (52%), Gaps = 37/651 (5%)
Query: 11 ICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSH 70
+ H I+A T N ++H Y+ +R++FD +P+ N+FSWN ++ A K+
Sbjct: 27 MIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAG 86
Query: 71 DLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTS 130
+ + S F+ P +D VT+N ++ GY + G A+K + M D + T+ +
Sbjct: 87 LISEMESTFEKLPDRDGVTWNVLIEGY-SLSGLVGAAVKAYNTMMR-DFSANLTRVTLMT 144
Query: 131 TLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEV 190
L L +V G+Q+H ++K ++ S L+ MY+ C +A +VF G ++
Sbjct: 145 MLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGL-DDR 203
Query: 191 NLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRM 250
N + N+++ G +E AL+ F R E D+VSW +I G QNG A+E ++ F M
Sbjct: 204 NTVMYNSLMGGLLACGMIEDALQLF-RGME-KDSVSWAAMIKGLAQNGLAKEAIECFREM 261
Query: 251 GENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENM 310
G++ +++ F S L AC GL + K+IH+ +++ + +V S ++D+YCKC+ +
Sbjct: 262 KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCL 321
Query: 311 NYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQ 370
+YA+++ FD + +KNVV WTA+ GY +
Sbjct: 322 HYAKTV-------------------------------FDRMKQKNVVSWTAMVVGYGQTG 350
Query: 371 NCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLI 430
E + + + + G+ D L + ACA ++L G + H + G+ +
Sbjct: 351 RAEEAVKIFLD-MQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVS 409
Query: 431 STLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK 490
++LV +Y KCG++ + +F RD V + M++ YA G + I LF++M++ G+K
Sbjct: 410 NSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLK 469
Query: 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIE 550
PD VT ++SA G VE G++YF MT++Y I P HY+CMIDL+ R+ +LE+A+
Sbjct: 470 PDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMR 529
Query: 551 FMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610
F+ +P DA+ + L+ CR N E+ A E L+ L+ ++ A Y L+++YA++G
Sbjct: 530 FINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGK 589
Query: 611 WAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL 661
W + ++R+ MR + G SW+ + ++H F+ D S P + IY+ L
Sbjct: 590 WDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKL 640
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (867), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 195/608 (32%), Positives = 322/608 (52%), Gaps = 35/608 (5%)
Query: 54 RNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIE 113
+++F N+++ + +L AR +FD +++V++ SM+CGY + + DA+ LF
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD-FAKDAVDLFFR 225
Query: 114 MQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKC 173
M DE + + T+ ++ C KL ++ G +++AF+ + + + VS+L+DMY KC
Sbjct: 226 MVR-DEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKC 284
Query: 174 RCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISG 233
+ A R+F+ G + L N + S
Sbjct: 285 NAIDVAKRLFD-------------------EYGASNLDL--------------CNAMASN 311
Query: 234 YVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISN 293
YV+ G E L +F M ++GVR + + SA+S+C LRN+ K H +VL+NG S
Sbjct: 312 YVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESW 371
Query: 294 PFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE 353
+ + ++D+Y KC + A + + + +S++ GY G ++ A F+++ E
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPE 431
Query: 354 KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKE 413
KN+V W + SG V+ E ++ ++EGV D + ++ + AC AL K
Sbjct: 432 KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKW 491
Query: 414 IHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGH 473
I+ YI + G+Q+D +L +TLVDM+S+CG+ A IF + RD+ + I A G+
Sbjct: 492 IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN 551
Query: 474 EEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA 533
E+AI LF++M+E+G+KPD V FV L+A H G V+ G++ F SM + +SPE HY
Sbjct: 552 AERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYG 611
Query: 534 CMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593
CM+DL GRA LE+A++ ++ +P E + VI S L CR+ N E+A A EK+ L
Sbjct: 612 CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPE 671
Query: 594 NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPK 653
YV L+NVYA+ G W +M ++R M+ + G S + + + H FT GD SHP+
Sbjct: 672 RTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPE 731
Query: 654 TNAIYSVL 661
I ++L
Sbjct: 732 MPNIEAML 739
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (851), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 212/663 (31%), Positives = 323/663 (48%), Gaps = 79/663 (11%)
Query: 13 HVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDL 72
H ++ G N L+ +YS+ L ++RK+FDEM +V SWN+II + K
Sbjct: 150 HALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKL--- 206
Query: 73 KQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTL 132
G AL++F M + + R D T+ + L
Sbjct: 207 -----------------------------GKPKVALEMFSRMTN-EFGCRPDNITLVNVL 236
Query: 133 NLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNL 192
C L G+QLH F V + + F + L+DMY+KC +EA VF + + ++
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DV 295
Query: 193 ISKNAMVAACCREGEMEMALKTFWRQPELN---DAVSWNTLISGYVQNGDAEEGLKLFVR 249
+S NAMVA + G E A++ F + E D V+W+ ISGY Q G E L + +
Sbjct: 296 VSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQ 355
Query: 250 MGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVL-------KNGLISNPFVSSGIVD 302
M +G++ NE T S LS C + + KEIH + + KNG V + ++D
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLID 415
Query: 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT--EKNVVVWT 360
+Y KC+ ++ A +M FDSL+ E++VV WT
Sbjct: 416 MYAKCKKVDTARAM-------------------------------FDSLSPKERDVVTWT 444
Query: 361 ALFSGYVKAQNCEALFDLLSEFVTKE-GVVTDALILVILLGACALQAALHPGKEIHAYIL 419
+ GY + + +LLSE ++ +A + L ACA AAL GK+IHAY L
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYAL 504
Query: 420 RMGVQMDKKLIST-LVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAI 478
R +S L+DMY+KCG+++ A ++F N + ++ V + ++ Y HG+ E+A+
Sbjct: 505 RNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEAL 564
Query: 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538
+F+EM G K D VT + +L A H G ++ G +YFN M + +SP +HYAC++DL
Sbjct: 565 GIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDL 624
Query: 539 YGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598
GRA +L A+ ++ +P E V+ +FL+ CR++ EL A EK+ L N+ Y
Sbjct: 625 LGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSY 684
Query: 599 VQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIY 658
L+N+YA G W ++ RIR MR + GCSWV F VGD +HP IY
Sbjct: 685 TLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIY 744
Query: 659 SVL 661
VL
Sbjct: 745 QVL 747
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 201/645 (31%), Positives = 326/645 (50%), Gaps = 107/645 (16%)
Query: 30 QLIHIYSK-HNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLV 88
LI ++ K N + K+FD+M E NV +W +I+ C++
Sbjct: 207 SLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQM------------------- 247
Query: 89 TYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLH 148
G+ +A++ F++M + D+FT++S + C +L N+ G+QLH
Sbjct: 248 -------------GFPREAIRFFLDMVLSG--FESDKFTLSSVFSACAELENLSLGKQLH 292
Query: 149 AFMVKTS--NDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREG 206
++ +++ +D SL+DMY+KC +G
Sbjct: 293 SWAIRSGLVDDVE----CSLVDMYAKCSA-----------------------------DG 319
Query: 207 EMEMALKTFWRQPELNDAVSWNTLISGYVQNGD-AEEGLKLFVRMGENG-VRWNEHTFAS 264
++ K F R E + +SW LI+GY++N + A E + LF M G V N TF+S
Sbjct: 320 SVDDCRKVFDRM-EDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378
Query: 265 ALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRN 324
A AC L + + K++ K GL SN V++ ++ ++ K + M
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRM-------------- 424
Query: 325 SFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVT 384
E+A+R F+SL+EKN+V + G + N E F LLSE
Sbjct: 425 -----------------EDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITE 467
Query: 385 KEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMT 444
+E V+ A LL A ++ G++IH+ ++++G+ ++ + + L+ MYSKCG++
Sbjct: 468 RELGVS-AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSID 526
Query: 445 YAEIIFQNFIE-RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503
A +F NF+E R+++ + MI +A HG + + F +M+E+G+KP+ VT+VAILSA
Sbjct: 527 TASRVF-NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585
Query: 504 RHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVI 563
H G V G ++FNSM D+KI P+ +HYACM+DL RA L A EF+ ++P + D ++
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645
Query: 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623
+FL CR++ N EL A K+L L+ N A Y+QL+N+YA G W E +R++M+
Sbjct: 646 WRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705
Query: 624 MKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGEL 668
+ GCSW+ V +IH F VGD +HP + IY L E+
Sbjct: 706 RNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEI 750
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 210/680 (30%), Positives = 351/680 (51%), Gaps = 15/680 (2%)
Query: 1 MRSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWN 60
+R +L+ A H I G N+LI +Y K + L +R+LFDE+ E + +
Sbjct: 25 LRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIART 84
Query: 61 TIISACIKSHDLKQARSLFDSSP--HKDLVTYNSMLCGYI-NAEGYEADALKLFIEMQSA 117
T++S S D+ AR +F+ +P +D V YN+M+ G+ N +GY A + LF +M+
Sbjct: 85 TMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSA--INLFCKMKH- 141
Query: 118 DEHIRMDEFTVTSTL-NLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKC--- 173
E + D FT S L L + + Q HA +K+ ++L+ +YSKC
Sbjct: 142 -EGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASS 200
Query: 174 -RCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLIS 232
A +VF+ E+ + S M+ + G ++ + + V++N +IS
Sbjct: 201 PSLLHSARKVFDEILEK-DERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMIS 259
Query: 233 GYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLIS 292
GYV G +E L++ RM +G+ +E T+ S + AC ++ K++H++VL+ S
Sbjct: 260 GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS 319
Query: 293 NPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT 352
F +S +V +Y KC + A ++ ++ S ++++ GY G++ EA+ F +
Sbjct: 320 FHFDNS-LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK 378
Query: 353 EKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK 412
EKN++ W + SG + E L S + +EG + +CA+ A G+
Sbjct: 379 EKNILSWMIMISGLAENGFGEEGLKLFS-CMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437
Query: 413 EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHG 472
+ HA +L++G + L+ MY+KCG + A +F+ D V +N +IA HG
Sbjct: 438 QYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHG 497
Query: 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHY 532
H +A+ ++EEML+KGI+PD +T + +L+A H G V+ G KYF+SM Y+I P DHY
Sbjct: 498 HGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY 557
Query: 533 ACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592
A +IDL R+ + A ++S+P + A I + L+ CR++ N EL A +KL L
Sbjct: 558 ARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIP 617
Query: 593 NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHP 652
+ Y+ L+N++AA G W E+ R+RK MR + CSW+ +E ++H F V D SHP
Sbjct: 618 EHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHP 677
Query: 653 KTNAIYSVLAIFTGELYEIA 672
+ A+Y L E+ +
Sbjct: 678 EAEAVYIYLQDLGKEMRRLG 697
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 676 | ||||||
| 359475162 | 670 | PREDICTED: putative pentatricopeptide re | 0.989 | 0.998 | 0.675 | 0.0 | |
| 224080303 | 677 | predicted protein [Populus trichocarpa] | 0.995 | 0.994 | 0.662 | 0.0 | |
| 224080297 | 677 | predicted protein [Populus trichocarpa] | 0.995 | 0.994 | 0.660 | 0.0 | |
| 224103443 | 677 | predicted protein [Populus trichocarpa] | 0.995 | 0.994 | 0.650 | 0.0 | |
| 449493040 | 1096 | PREDICTED: putative pentatricopeptide re | 0.980 | 0.604 | 0.628 | 0.0 | |
| 449461160 | 1096 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.980 | 0.604 | 0.626 | 0.0 | |
| 356541109 | 681 | PREDICTED: putative pentatricopeptide re | 0.970 | 0.963 | 0.605 | 0.0 | |
| 297741429 | 553 | unnamed protein product [Vitis vinifera] | 0.813 | 0.994 | 0.674 | 0.0 | |
| 334185448 | 678 | pentatricopeptide repeat-containing prot | 0.985 | 0.982 | 0.549 | 0.0 | |
| 297830544 | 614 | hypothetical protein ARALYDRAFT_479395 [ | 0.896 | 0.986 | 0.570 | 0.0 |
| >gi|359475162|ref|XP_003631603.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/672 (67%), Positives = 540/672 (80%), Gaps = 3/672 (0%)
Query: 1 MRSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWN 60
MRS+ K+ H AIK G+T T T+NQLIH+YSKH L E+ KLFDEMPERNVF+WN
Sbjct: 1 MRSI--KDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWN 58
Query: 61 TIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEH 120
II A IK+ +LKQAR LFDS+P KDLVTYNSML GYIN +GYE +ALKLFIEMQS ++
Sbjct: 59 AIIWAYIKTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDE 118
Query: 121 IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEAC 180
R+DEF++T LNL KL +G+QLH++MVKT+N+ SGFAVSSLIDMYSKC C+ E C
Sbjct: 119 TRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVC 178
Query: 181 RVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDA 240
+VF+GC ++L+SKNAMVAACCREGE+EM + FWR ELND VSWNTLISGYVQNG
Sbjct: 179 QVFDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCE 238
Query: 241 EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGI 300
E+ LKLFV M EN VRWNEHT A LSAC GLR++K KE+H WVLK L NPF+SSG+
Sbjct: 239 EDALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGL 298
Query: 301 VDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWT 360
VDVYCKC NM YAE + G N+FSI+SMIVG+S QGNM EARR FDSLTEK+ ++WT
Sbjct: 299 VDVYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWT 358
Query: 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILR 420
ALF+GYVK+Q CEA+F+LLSEF KE +V DALIL+ +LGACA+QAAL+PGK+IHAY+LR
Sbjct: 359 ALFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLR 418
Query: 421 MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILL 480
+G+++D+KL+S +VDMYSK GN+ YAE IFQ RD V+YN+M A YAHHGHE +AI
Sbjct: 419 IGIELDEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQ 478
Query: 481 FEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540
FEEMLE+G++PDAVTFVA+LSA RHCG VE+GEKYF SMT DY I PE DHYACMIDLYG
Sbjct: 479 FEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMT-DYNILPEIDHYACMIDLYG 537
Query: 541 RANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600
RANQLEKA+ FMK IP E DAVILG+FLN CR+NRN +LA EAEEK+LR+EG+N ARYVQ
Sbjct: 538 RANQLEKAVAFMKRIPIEPDAVILGAFLNACRINRNTKLAREAEEKILRIEGDNGARYVQ 597
Query: 601 LANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSV 660
LANVYAAEG W EMGRIR++MR + +FAGCSWVYVE+ +HIFT GD SH AIYS+
Sbjct: 598 LANVYAAEGKWVEMGRIRRKMRENEIKKFAGCSWVYVENRVHIFTSGDSSHSSAEAIYSI 657
Query: 661 LAIFTGELYEIA 672
L I T EL + A
Sbjct: 658 LLILTAELNDTA 669
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080303|ref|XP_002306089.1| predicted protein [Populus trichocarpa] gi|222849053|gb|EEE86600.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/678 (66%), Positives = 547/678 (80%), Gaps = 5/678 (0%)
Query: 1 MRSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWN 60
MRSL K+ L+ HV++IK+G TL +T+NQL+H+YSKH L+ E++KLFDEMP+RN +SWN
Sbjct: 1 MRSL--KDGLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWN 58
Query: 61 TIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEH 120
TIISA IKS +L QA+S+FDS+ +DLVTYNSML GY++ +GYE +AL+LF+EMQS
Sbjct: 59 TIISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQSIRNE 118
Query: 121 IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEAC 180
I +D+ T+TS +NL KL N +GRQLH++MVKT ND SGF VSSLIDMYSKC C++EAC
Sbjct: 119 IEIDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEAC 178
Query: 181 RVFEGCTEE--VNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNG 238
+VF+GC E +L+SKNAMVAA CREG+MEMAL+ FWR+ ELND+VSWNTLISGYVQNG
Sbjct: 179 QVFKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNG 238
Query: 239 DAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSS 298
E LKLFV MGENGV+WNEHTF S LSAC LRN+K KE+H+W+LKNGL S+ FV S
Sbjct: 239 YPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVES 298
Query: 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVV 358
GIVDVYCKC NM YAES+LL +GVR+SFSI+SMIVG+S QGNM EA R FDSL EKN +V
Sbjct: 299 GIVDVYCKCGNMKYAESLLLTRGVRSSFSITSMIVGFSSQGNMVEACRLFDSLEEKNSIV 358
Query: 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYI 418
W ALFSGYVK + CEA F+LL E++ KE + DALIL+ CA QAAL PGK+IH Y+
Sbjct: 359 WAALFSGYVKLKQCEAFFELLREYIAKEAAIPDALILISAFNVCAFQAALGPGKQIHGYV 418
Query: 419 LRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAI 478
RMG++MD K + ++DMYSKCG++ YAE +F IERDLVLYNVM+A YAHHGHE KAI
Sbjct: 419 FRMGIEMDMKTTTAMIDMYSKCGSIPYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIKAI 478
Query: 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538
LF+EMLE+G+ PDAVTFVA+LSA RH G V++GEK F SMT DY I PETDHYACMIDL
Sbjct: 479 NLFQEMLERGVGPDAVTFVALLSACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDL 538
Query: 539 YGRANQLEKAIEFMKSIPTE-EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597
YGRA+QLEK + FM+ IP E +DA ++G+F N CRLN N ELA EAEEKLL +EG++ AR
Sbjct: 539 YGRASQLEKMVLFMQRIPMEHQDAAVVGAFFNACRLNNNTELAKEAEEKLLNIEGDSGAR 598
Query: 598 YVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAI 657
YVQLANVYAAEGNWAEMGRIR++MRG + +FAGCSWVY+++E+H FT GD +H K +I
Sbjct: 599 YVQLANVYAAEGNWAEMGRIRREMRGKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESI 658
Query: 658 YSVLAIFTGELYEIAGAF 675
YS+L ELYEIAGAF
Sbjct: 659 YSMLEFLMAELYEIAGAF 676
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080297|ref|XP_002306087.1| predicted protein [Populus trichocarpa] gi|222849051|gb|EEE86598.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/678 (66%), Positives = 544/678 (80%), Gaps = 5/678 (0%)
Query: 1 MRSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWN 60
MRSL K+ L+ HV++IK+G TL +T+NQL+H+YSKH L+ E++KLFDEMP+RN +SWN
Sbjct: 1 MRSL--KDGLMRHVRSIKSGFTLPILTSNQLVHLYSKHCLINEAQKLFDEMPQRNTYSWN 58
Query: 61 TIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEH 120
TIISA IKS +L QA+S+FDS+ +DLVTYNSML GY++ +GYE +AL+LF+EMQS
Sbjct: 59 TIISAHIKSQNLAQAKSIFDSASVRDLVTYNSMLSGYVSVDGYERNALELFVEMQSKRNE 118
Query: 121 IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEAC 180
I +D+ T+TS +NL KL N +GRQLH++MVKT ND SGF VSSLIDMYSKC C++EAC
Sbjct: 119 IEIDDLTITSMVNLFSKLCNSCYGRQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCFKEAC 178
Query: 181 RVFEGCTEE--VNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNG 238
+VF+GC E +L+SKNAMVAA CREG+MEMAL+ FWR+ ELND+VSWNTLISGYVQNG
Sbjct: 179 QVFKGCEREGGFDLVSKNAMVAAYCREGDMEMALRLFWRESELNDSVSWNTLISGYVQNG 238
Query: 239 DAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSS 298
E LKLFV MGENGV+WNEHTF S LSAC LRN+K KE+H+W+LKNGL S+ FV S
Sbjct: 239 YPVEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLGSSAFVES 298
Query: 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVV 358
GIVDVYCKC NM YAES+ L +GVR+SFSI+SMIVGYS QGNM EA R FDSL EKN +V
Sbjct: 299 GIVDVYCKCGNMKYAESLHLTRGVRSSFSITSMIVGYSSQGNMVEACRLFDSLEEKNSIV 358
Query: 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYI 418
W ALFSGYVK + CEA F+LL E++ KE + DALIL+ CA QAAL PGK+IH Y+
Sbjct: 359 WAALFSGYVKLKQCEAFFELLREYIAKEAAIPDALILINAFNVCAFQAALGPGKQIHGYV 418
Query: 419 LRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAI 478
RMG++MD K + ++DMYSKCG++ YAE +F IERDLVLYNVM+A YAHHGHE KAI
Sbjct: 419 FRMGIEMDMKTTTAMIDMYSKCGSIPYAEKLFLKVIERDLVLYNVMLAGYAHHGHEIKAI 478
Query: 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538
LF+EMLE+G+ PDAVTFVA+LSA RH G V++GEK F SMT DY I PETDHYACMIDL
Sbjct: 479 NLFQEMLERGVGPDAVTFVALLSACRHRGLVDLGEKTFYSMTEDYHILPETDHYACMIDL 538
Query: 539 YGRANQLEKAIEFMKSIPTE-EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597
YGRA+QLEK + FM+ IP E +DA ++G+F N CRLN N ELA EAEEKLL +EG++ AR
Sbjct: 539 YGRASQLEKMVLFMQRIPVEHQDAAVVGAFFNACRLNNNTELAKEAEEKLLNIEGDSGAR 598
Query: 598 YVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAI 657
YVQLANVYAAEGNWAEMGRI ++MRG + +FAGCSWVY+++E+H FT GD +H K +I
Sbjct: 599 YVQLANVYAAEGNWAEMGRISREMRGKEAKKFAGCSWVYLDNEVHSFTSGDRTHTKAESI 658
Query: 658 YSVLAIFTGELYEIAGAF 675
YS L ELYEIAGAF
Sbjct: 659 YSKLEFLMAELYEIAGAF 676
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103443|ref|XP_002313059.1| predicted protein [Populus trichocarpa] gi|222849467|gb|EEE87014.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/678 (65%), Positives = 534/678 (78%), Gaps = 5/678 (0%)
Query: 1 MRSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWN 60
MRSL + LI HV++IK+G TL +T+NQLIH+YSKH L+ E++KLFDEMP RN++SWN
Sbjct: 1 MRSLRV--GLIHHVRSIKSGFTLPILTSNQLIHLYSKHCLINEAQKLFDEMPRRNIYSWN 58
Query: 61 TIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEH 120
TIISA +KS +L QA+S+FDS+ +DLVTYNSML GY + +GYE +AL+LF+EM S
Sbjct: 59 TIISAHVKSQNLAQAKSIFDSASVRDLVTYNSMLSGYADVDGYERNALELFVEMHSKSND 118
Query: 121 IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEAC 180
I +D+FTVTS + L KL N+ +G QLH++MVKT ND SGF VSSLIDMYSKC CY+EAC
Sbjct: 119 IGVDDFTVTSMVKLFAKLSNLCYGMQLHSYMVKTGNDRSGFVVSSLIDMYSKCGCYKEAC 178
Query: 181 RVFEGCTEE--VNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNG 238
+F G +E ++L+SKNAMVAACCREGEMEMAL FWR+ ELND+VSWNTLISGYVQNG
Sbjct: 179 GIFRGSEKEGGIDLVSKNAMVAACCREGEMEMALGLFWRENELNDSVSWNTLISGYVQNG 238
Query: 239 DAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSS 298
E LKLFV MGENGV+WNEHTF S LSAC LRN+K KE+H+W+LKNGL S+ FV S
Sbjct: 239 YPLEALKLFVCMGENGVKWNEHTFGSVLSACADLRNLKIGKEMHAWILKNGLSSSAFVES 298
Query: 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVV 358
GIVDVYCK NM YAES L G +SFSI+SMIVGYS QGNM EA R FDSL EKN +V
Sbjct: 299 GIVDVYCKGGNMKYAESFHLTSGTGSSFSITSMIVGYSSQGNMVEACRLFDSLEEKNSIV 358
Query: 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYI 418
W ALF GYVK CEA+F+LL ++ KE + DALILV L CA QAAL PGK+IH Y+
Sbjct: 359 WAALFGGYVKLNQCEAIFELLCLYIAKEAAIPDALILVSALSVCAFQAALGPGKQIHGYV 418
Query: 419 LRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAI 478
RMG++MD K+ + ++DMYSKCG++ YAE +F IERDLVLYNVM+A YAHHG+E KAI
Sbjct: 419 YRMGIEMDIKMTTAMIDMYSKCGSIPYAEKMFLKVIERDLVLYNVMVAGYAHHGYEIKAI 478
Query: 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538
LF+EMLE+G+ PDA+TFVA+LSA RH G V++GE+ F SMT DY I PETDHYACMIDL
Sbjct: 479 NLFQEMLERGVGPDAITFVALLSACRHRGLVDLGERTFYSMTEDYLILPETDHYACMIDL 538
Query: 539 YGRANQLEKAIEFMKSIPTE-EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597
YGRA+QLEK + FM+ IP E +DA + G+F N CRLN+N ELA EAEEKLL++EG++ AR
Sbjct: 539 YGRASQLEKMVLFMQRIPIEYQDAAVAGAFFNACRLNKNTELAREAEEKLLKIEGDSGAR 598
Query: 598 YVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAI 657
YVQLAN YAAEGNWAEMGRIRK+MRG + +FAGCSWVY+++ +H F GD +H K I
Sbjct: 599 YVQLANAYAAEGNWAEMGRIRKEMRGKEAKKFAGCSWVYLDNGVHTFISGDRTHSKAVCI 658
Query: 658 YSVLAIFTGELYEIAGAF 675
YS+L T ELYEIAG F
Sbjct: 659 YSMLDFLTSELYEIAGVF 676
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/664 (62%), Positives = 528/664 (79%), Gaps = 1/664 (0%)
Query: 5 NLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIIS 64
+LK L+CH+Q IK+G T T +NQLI Y+KH LL +++KLFDEMPERNVFSWN II+
Sbjct: 426 HLKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIA 485
Query: 65 ACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMD 124
A +KS +L+QAR+LFDS+ KDLVTYNSML GY ++GY+ AL F+EMQ+A + IR+D
Sbjct: 486 AYVKSQNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRID 545
Query: 125 EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFE 184
EFT+ + LNL KL + +G+QLH+FM+KT+ND + FA SSLIDMYSKC ++EACRV+
Sbjct: 546 EFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYY 605
Query: 185 GCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGL 244
GC E V+ +S+NAMVAACCREGE+++AL FW++ E ND V+WNT+ISG+VQNG EE L
Sbjct: 606 GCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESL 665
Query: 245 KLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVY 304
KLFVRM + V WNEHTFAS LSAC LR++K KE+H++VLKN LI+NPF+ SG+VDVY
Sbjct: 666 KLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVY 725
Query: 305 CKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFS 364
CKC NM YAES+ ++N +SI+SMIVGYS QGNM EAR+ FDSL EKN VVWTALF
Sbjct: 726 CKCNNMRYAESVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFF 785
Query: 365 GYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ 424
GYVK Q CEA+F+LLSE+ KE V D LIL+ ++GACA+QAAL PGK+IH+Y+LR G++
Sbjct: 786 GYVKLQQCEAVFELLSEY-RKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIK 844
Query: 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEM 484
+D KL S+LVDMYSKCG++ YAE IF+ ++D ++YN+MIA YAHHG E +A+ LF+EM
Sbjct: 845 LDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEM 904
Query: 485 LEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ 544
++ G KPDA+TFVA+LSA RH G VE+GE +F+SM+ DY I PE DHYACMIDLYGRANQ
Sbjct: 905 VKHGFKPDAITFVALLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQ 964
Query: 545 LEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604
L+KA+EFM+ IP + DAVI G+FLN CR+N NAELA +AE++LL +EG N +RYVQLANV
Sbjct: 965 LDKALEFMRKIPIQLDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRYVQLANV 1024
Query: 605 YAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIF 664
YAAEGNW EMGRIRK+M+G + + AGCSWV+VE + H+F GD H K AIYS LA
Sbjct: 1025 YAAEGNWEEMGRIRKKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIYSTLASL 1084
Query: 665 TGEL 668
T EL
Sbjct: 1085 TDEL 1088
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g18840-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/664 (62%), Positives = 528/664 (79%), Gaps = 1/664 (0%)
Query: 5 NLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIIS 64
+LK L+CH+Q IK+G T T +NQLI Y+KH LL +++KLFDEMPERNVFSWN II+
Sbjct: 426 HLKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIA 485
Query: 65 ACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMD 124
A +KSH+L+QAR+LFDS+ KDLVTYNSML GY ++GY+ AL F+EMQ+A + IR+D
Sbjct: 486 AYVKSHNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRID 545
Query: 125 EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFE 184
EFT+ + LNL KL + +G+QLH+FM+KT+ND + FA SSLIDMYSKC ++EACRV+
Sbjct: 546 EFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYY 605
Query: 185 GCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGL 244
GC E V+ +S+NAMVAACCREGE+++AL FW++ E ND V+WNT+ISG+VQNG EE L
Sbjct: 606 GCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESL 665
Query: 245 KLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVY 304
KLFVRM + V WNEHTFAS LSAC LR++K KE+H++VLKN LI+NPF+ SG+VDVY
Sbjct: 666 KLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVY 725
Query: 305 CKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFS 364
CKC NM YA+S+ ++N +SI+SMIVGYS QGNM EAR+ FDSL EKN VWTALF
Sbjct: 726 CKCNNMRYAKSVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVWTALFF 785
Query: 365 GYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ 424
GYVK Q CEA+F+LLSE+ KE V D LIL+ ++GACA+QAAL PGK+IH+Y+LR G++
Sbjct: 786 GYVKLQQCEAVFELLSEY-RKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIK 844
Query: 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEM 484
+D KL S+LVDMYSKCG++ YAE IF+ ++D ++YN+MIA YAHHG E +A+ LF+EM
Sbjct: 845 LDTKLTSSLVDMYSKCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEM 904
Query: 485 LEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ 544
++ G KPDA+TFVA+LSA RH G VE+GE +F+SM+ DY I PE DHYACMIDLYGRANQ
Sbjct: 905 VKHGFKPDAITFVALLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQ 964
Query: 545 LEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604
L+KA+EFM+ IP + DAVI G+FLN CR+N NAELA +AE++LL +EG N +RYVQLANV
Sbjct: 965 LDKALEFMRKIPIQLDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRYVQLANV 1024
Query: 605 YAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIF 664
YAAEGNW EMGRIRK+M+G + + AGCSWV+VE + H+F GD H K AIYS LA
Sbjct: 1025 YAAEGNWEEMGRIRKKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIYSTLASL 1084
Query: 665 TGEL 668
T EL
Sbjct: 1085 TDEL 1088
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541109|ref|XP_003539025.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/659 (60%), Positives = 506/659 (76%), Gaps = 3/659 (0%)
Query: 13 HVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDL 72
HVQAIK+GL + T NQLIH+YS H LL+E+ KLFDEMP NVFSWN II A IK+H+L
Sbjct: 6 HVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEMPHPNVFSWNAIIMAYIKAHNL 65
Query: 73 KQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTL 132
QAR+LFDS+ H+DLV+YNS+L Y+ ++GYE +AL LF MQSA + I +DE T+T+ L
Sbjct: 66 TQARALFDSASHRDLVSYNSLLSAYVGSDGYETEALDLFTRMQSARDTIGIDEITLTNML 125
Query: 133 NLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNL 192
NL KL + +G+Q+H++MVKT+ND S FA+SSLIDMYSKC C++EAC +F C E V+L
Sbjct: 126 NLAAKLRVLCYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGCFQEACNLFGSCDEMVDL 185
Query: 193 ISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGE 252
+SKNAMVAACCREG+M+MAL FW+ PEL D VSWNTLI+GY QNG E+ L FV M E
Sbjct: 186 VSKNAMVAACCREGKMDMALNVFWKNPELKDTVSWNTLIAGYSQNGYMEKSLTFFVEMIE 245
Query: 253 NGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNY 312
NG+ +NEHT AS L+AC L+ K K +H+WVLK G SN F+SSG+VD Y KC N+ Y
Sbjct: 246 NGIDFNEHTLASVLNACSALKCSKLGKSVHAWVLKKGYSSNQFISSGVVDFYSKCGNIRY 305
Query: 313 AESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNC 372
AE + G+++ F+++S+I YS QGNM EA+R FDSL E+N VVWTAL SGYVK+Q C
Sbjct: 306 AELVYAKIGIKSPFAVASLIAAYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQC 365
Query: 373 EALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLIST 432
EA+F L EF TKE +V DA+I+V +LGACA+QA L GK+IHAYILRM ++DKKL+S+
Sbjct: 366 EAVFKLFREFRTKEALVPDAMIIVSILGACAIQADLSLGKQIHAYILRMRFKVDKKLLSS 425
Query: 433 LVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK 490
LVDMYSKCGN+ YAE +F+ +RD +LYNV+IA YAHHG E KAI LF+EML K +K
Sbjct: 426 LVDMYSKCGNVAYAEKLFRLVTDSDRDAILYNVIIAGYAHHGFENKAIELFQEMLNKSVK 485
Query: 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIE 550
PDAVTFVA+LSA RH G VE+GE++F SM Y + PE HYACM+D+YGRANQLEKA+E
Sbjct: 486 PDAVTFVALLSACRHRGLVELGEQFFMSME-HYNVLPEIYHYACMVDMYGRANQLEKAVE 544
Query: 551 FMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610
FM+ IP + DA I G+FLN C+++ +A L +AEE+LL++E +N +RYVQLAN YAA+G
Sbjct: 545 FMRKIPIKIDATIWGAFLNACQMSSDAALVKQAEEELLKVEADNGSRYVQLANAYAAKGK 604
Query: 611 WAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELY 669
W EMGRIRK+MRG + + AGCSW+YVE+ IH+FT GD SH K A+YS L G+LY
Sbjct: 605 WDEMGRIRKKMRGHEAKKLAGCSWIYVENGIHVFTSGDRSHSKAEAVYSTLTCLNGKLY 663
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741429|emb|CBI32560.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/553 (67%), Positives = 444/553 (80%), Gaps = 3/553 (0%)
Query: 1 MRSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWN 60
MRS+ K+ H AIK G+T T T+NQLIH+YSKH L E+ KLFDEMPERNVF+WN
Sbjct: 1 MRSI--KDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWN 58
Query: 61 TIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEH 120
II A IK+ +LKQAR LFDS+P KDLVTYNSML GYIN +GYE +ALKLFIEMQS ++
Sbjct: 59 AIIWAYIKTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDE 118
Query: 121 IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEAC 180
R+DEF++T LNL KL +G+QLH++MVKT+N+ SGFAVSSLIDMYSKC C+ E C
Sbjct: 119 TRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVC 178
Query: 181 RVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDA 240
+VF+GC ++L+SKNAMVAACCREGE+EM + FWR ELND VSWNTLISGYVQNG
Sbjct: 179 QVFDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCE 238
Query: 241 EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGI 300
E+ LKLFV M EN VRWNEHT A LSAC GLR++K KE+H WVLK L NPF+SSG+
Sbjct: 239 EDALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGL 298
Query: 301 VDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWT 360
VDVYCKC NM YAE + G N+FSI+SMIVG+S QGNM EARR FDSLTEK+ ++WT
Sbjct: 299 VDVYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWT 358
Query: 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILR 420
ALF+GYVK+Q CEA+F+LLSEF KE +V DALIL+ +LGACA+QAAL+PGK+IHAY+LR
Sbjct: 359 ALFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLR 418
Query: 421 MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILL 480
+G+++D+KL+S +VDMYSK GN+ YAE IFQ RD V+YN+M A YAHHGHE +AI
Sbjct: 419 IGIELDEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQ 478
Query: 481 FEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540
FEEMLE+G++PDAVTFVA+LSA RHCG VE+GEKYF SMT DY I PE DHYACMIDLYG
Sbjct: 479 FEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMT-DYNILPEIDHYACMIDLYG 537
Query: 541 RANQLEKAIEFMK 553
RANQLEKA E K
Sbjct: 538 RANQLEKAQERQK 550
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185448|ref|NP_001078182.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273297|sp|Q9LHN5.1|PP242_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g18840 gi|9294693|dbj|BAB03093.1| unnamed protein product [Arabidopsis thaliana] gi|332642633|gb|AEE76154.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/670 (54%), Positives = 490/670 (73%), Gaps = 4/670 (0%)
Query: 6 LKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISA 65
LK+ + H+++IK+G TLT +++NQL+++YSK LLRE+R +FDEM ERNV+SWN +I+A
Sbjct: 4 LKDGFLHHIRSIKSGSTLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAA 63
Query: 66 CIKSHDLKQARSLFDSSP-HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSAD-EHIRM 123
+K +++K+AR LF+S +DL+TYN++L G+ +G E++A+++F EM + + I +
Sbjct: 64 YVKFNNVKEARELFESDNCERDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWI 123
Query: 124 DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVF 183
D+FTVT+ + L KL NV +G QLH +VKT ND + FAVSSLI MYSKC ++E C +F
Sbjct: 124 DDFTVTTMVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIF 183
Query: 184 EG-CTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEE 242
G C E V+ +++NAM+AA CREG+++ AL FWR PELND +SWNTLI+GY QNG EE
Sbjct: 184 NGSCVEFVDSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEE 243
Query: 243 GLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVD 302
LK+ V M ENG++W+EH+F + L+ L+++K KE+H+ VLKNG SN FVSSGIVD
Sbjct: 244 ALKMAVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVD 303
Query: 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTAL 362
VYCKC NM YAES LL G N +S SSMIVGYS QG M EA+R FDSL+EKN+VVWTA+
Sbjct: 304 VYCKCGNMKYAESAHLLYGFGNLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAM 363
Query: 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMG 422
F GY+ + +++ +L F+ E D+L++V +LGAC+LQA + PGKEIH + LR G
Sbjct: 364 FLGYLNLRQPDSVLELARAFIANETNTPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTG 423
Query: 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFE 482
+ MDKKL++ VDMYSKCGN+ YAE IF + ERD V+YN MIA AHHGHE K+ FE
Sbjct: 424 ILMDKKLVTAFVDMYSKCGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFE 483
Query: 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542
+M E G KPD +TF+A+LSA RH G V GEKYF SM Y ISPET HY CMIDLYG+A
Sbjct: 484 DMTEGGFKPDEITFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGKA 543
Query: 543 NQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601
+L+KAIE M+ I E+DAVILG+FLN C N+N EL E EEKLL +EG+N +RY+Q+
Sbjct: 544 YRLDKAIELMEGIDQVEKDAVILGAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQI 603
Query: 602 ANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL 661
AN YA+ G W EM RIR QMRG + F+GCSW ++ + H+FT D+SH +T AIY++L
Sbjct: 604 ANAYASSGRWDEMQRIRHQMRGKELEIFSGCSWANIDKQFHMFTSSDISHYETEAIYAML 663
Query: 662 AIFTGELYEI 671
T +L EI
Sbjct: 664 HFVTKDLSEI 673
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830544|ref|XP_002883154.1| hypothetical protein ARALYDRAFT_479395 [Arabidopsis lyrata subsp. lyrata] gi|297328994|gb|EFH59413.1| hypothetical protein ARALYDRAFT_479395 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/610 (57%), Positives = 455/610 (74%), Gaps = 4/610 (0%)
Query: 6 LKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISA 65
LK+ + H+++IK G TLTTI++NQL+++YSK+ LLRE+R +FDEMPERNV+SWN +I+A
Sbjct: 4 LKDGFLHHIRSIKTGSTLTTISSNQLVNLYSKNGLLREARNVFDEMPERNVYSWNAVIAA 63
Query: 66 CIKSHDLKQARSLFDSSP-HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSAD-EHIRM 123
+K +++K+AR LF +DL+TYN++L G+ +G E++A+K+F EM + + I +
Sbjct: 64 YVKFNNVKEARELFKRDNCERDLITYNTLLSGFAKTDGCESEAIKMFGEMHRKEKDEIWI 123
Query: 124 DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVF 183
D+F+VT+ + L KL NV +G QLH MVKT NDA+ F+VSSLI MYSKC ++E C VF
Sbjct: 124 DDFSVTTMVKLSAKLTNVFYGEQLHGVMVKTGNDATKFSVSSLIHMYSKCGKFKEVCNVF 183
Query: 184 EG-CTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEE 242
G C E V+ +++NAM+AA CREG+++ AL FWR PELND +SWNTLISGY QNG EE
Sbjct: 184 NGSCVEFVDSVARNAMIAAYCREGDIDKALSIFWRNPELNDTISWNTLISGYAQNGYEEE 243
Query: 243 GLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVD 302
LK+ V M E+G++W+EHTFA+ L+ L+++K KE+H+ +LKNG SN FVSSGIVD
Sbjct: 244 ALKIAVSMEESGLKWDEHTFAAVLNVLSSLKSLKIGKEVHARLLKNGSYSNKFVSSGIVD 303
Query: 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTAL 362
VYCKC NM YAES LL G N +S SSMIVGYS QG M EA+R FDSL+EKN+VVWTA+
Sbjct: 304 VYCKCGNMKYAESAHLLYGFGNLYSTSSMIVGYSSQGKMGEAKRLFDSLSEKNLVVWTAM 363
Query: 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMG 422
F GY+ + +++ +L +F+ E V D+L++V +LGAC+LQA + PGKEIH + LR G
Sbjct: 364 FLGYLNLRQPDSVLELARDFIANETNVPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTG 423
Query: 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFE 482
+ MDKKL++ VDMYSKCGN+ YAE IF ERD V+YN MIA YAHHGHE K+ LFE
Sbjct: 424 ILMDKKLVTAFVDMYSKCGNVEYAERIFDISFERDTVMYNTMIAGYAHHGHEAKSFQLFE 483
Query: 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542
+M E G KPD +TF+A+LSA RH G V GEKYF SM Y ISPE HY CMIDLYG+A
Sbjct: 484 DMTEGGFKPDEITFMALLSACRHRGLVLAGEKYFKSMIEAYNISPEAGHYTCMIDLYGKA 543
Query: 543 NQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601
N+L+KAIE M+ I E+DAVILG+FLN C N+N EL E EEKLL +EG+N +RY+QL
Sbjct: 544 NRLDKAIELMEGIDQVEKDAVILGAFLNACSWNKNTELVKEVEEKLLAIEGSNGSRYIQL 603
Query: 602 ANVYAAEGNW 611
AN YA+ G W
Sbjct: 604 ANAYASSGRW 613
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 676 | ||||||
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.957 | 0.823 | 0.334 | 9.4e-98 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.894 | 0.868 | 0.337 | 1.6e-86 | |
| TAIR|locus:2057986 | 625 | AT2G36980 [Arabidopsis thalian | 0.886 | 0.958 | 0.314 | 1.5e-81 | |
| TAIR|locus:2025242 | 695 | AT1G77010 [Arabidopsis thalian | 0.852 | 0.828 | 0.322 | 6.6e-81 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.967 | 0.827 | 0.298 | 1.8e-80 | |
| TAIR|locus:2047017 | 597 | AT2G21090 "AT2G21090" [Arabido | 0.831 | 0.941 | 0.322 | 5.4e-79 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.880 | 0.761 | 0.302 | 9.3e-75 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.695 | 0.552 | 0.312 | 1.8e-72 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.551 | 0.419 | 0.301 | 5.8e-71 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.683 | 0.626 | 0.315 | 9.9e-71 |
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
Identities = 220/657 (33%), Positives = 348/657 (52%)
Query: 9 ALICHVQAIKAGXXXXXXXXXXXXXXYSKHNLLRESRKLFDEMPERNVFSWNTIISACIK 68
A + H + IK+G YSK +RKLFDEMP R FSWNT++SA K
Sbjct: 33 AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92
Query: 69 SHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTV 128
D+ FD P +D V++ +M+ GY N Y A+++ +M E I +FT+
Sbjct: 93 RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHK-AIRVMGDM--VKEGIEPTQFTL 149
Query: 129 TSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE 188
T+ L + G+++H+F+VK + +SL++MY+KC A VF+
Sbjct: 150 TNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVV 209
Query: 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFV 248
++ S NAM+A + G+M++A+ F + E D V+WN++ISG+ Q G L +F
Sbjct: 210 R-DISSWNAMIALHMQVGQMDLAMAQFEQMAE-RDIVTWNSMISGFNQRGYDLRALDIFS 267
Query: 249 RMGENGVRWNEH-TFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKC 307
+M + + + T AS LSAC L + K+IHS ++ G + V + ++ +Y +C
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC 327
Query: 308 ENMNYAESMLLLKGVRNSF--SISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSG 365
+ A ++ +G ++ ++++ GY G+M +A+ F SL +++VV WTA+ G
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVG 387
Query: 366 YVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQM 425
Y + + +L V G ++ L +L + A+L GK+IH ++ G
Sbjct: 388 YEQHGSYGEAINLFRSMVGG-GQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIY 446
Query: 426 DKKLISTLVDMYSKCGNMTYAEIIFQNF-IERDLVLYNVMIACYAHHGHEEKAILLFEEM 484
+ + L+ MY+K GN+T A F ERD V + MI A HGH E+A+ LFE M
Sbjct: 447 SVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506
Query: 485 LEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ 544
L +G++PD +T+V + SA H G V G +YF+ M KI P HYACM+DL+GRA
Sbjct: 507 LMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGL 566
Query: 545 LEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNXXXXXXXXXXXXXXXGNNKARYVQLANV 604
L++A EF++ +P E D V GS L+ CR+++N N Y LAN+
Sbjct: 567 LQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANL 626
Query: 605 YAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL 661
Y+A G W E +IRK M+ + + G SW+ V+H++H+F V D +HP+ N IY +
Sbjct: 627 YSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTM 683
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 210/622 (33%), Positives = 325/622 (52%)
Query: 56 VFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQ 115
+F N +I A K L+ R +FD P +++ T+NS++ G + G+ +A LF M
Sbjct: 55 IFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTG-LTKLGFLDEADSLFRSMP 113
Query: 116 SADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGF-AVSSLIDMYSKCR 174
D+ + + + C + L F++ + AS A S L DM +
Sbjct: 114 ERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQ 173
Query: 175 CYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGY 234
+ + +V + S A+V + G + A + F + N VSWN+LI+ +
Sbjct: 174 VHSLIAK--SPFLSDVYIGS--ALVDMYSKCGNVNDAQRVFDEMGDRN-VVSWNSLITCF 228
Query: 235 VQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNP 294
QNG A E L +F M E+ V +E T AS +SAC L +K +E+H V+KN + N
Sbjct: 229 EQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRND 288
Query: 295 FV-SSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE 353
+ S+ VD+Y KC + A + +RN + +SMI GY++ + + AR F + E
Sbjct: 289 IILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAE 348
Query: 354 KNVVVWTALFSGYVK-AQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK 412
+NVV W AL +GY + +N EAL L + +E V +L ACA A LH G
Sbjct: 349 RNVVSWNALIAGYTQNGENEEALS--LFCLLKRESVCPTHYSFANILKACADLAELHLGM 406
Query: 413 EIHAYILRMGVQM-----DKKLI-STLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIA 466
+ H ++L+ G + D + ++L+DMY KCG + ++F+ +ERD V +N MI
Sbjct: 407 QAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMII 466
Query: 467 CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKIS 526
+A +G+ +A+ LF EMLE G KPD +T + +LSA H G VE G YF+SMT D+ ++
Sbjct: 467 GFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVA 526
Query: 527 PETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNXXXXXXXXXX 586
P DHY CM+DL GRA LE+A ++ +P + D+VI GS L C+++RN
Sbjct: 527 PLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEK 586
Query: 587 XXXXXGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTV 646
+N YV L+N+YA G W ++ +RK MR + GCSW+ ++ H+F V
Sbjct: 587 LLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMV 646
Query: 647 GDVSHPKTNAIYSVLAIFTGEL 668
D SHP+ I+S+L I E+
Sbjct: 647 KDKSHPRKKQIHSLLDILIAEM 668
|
|
| TAIR|locus:2057986 AT2G36980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 193/614 (31%), Positives = 311/614 (50%)
Query: 63 ISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIR 122
I++ KS + AR +FD P D V +N+ML Y G +A+ LF +++ +D +
Sbjct: 11 IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRL-GLHQEAIALFTQLRFSDA--K 67
Query: 123 MDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRV 182
D+++ T+ L+ C L NV FGR++ + ++++ AS +SLIDMY KC A +V
Sbjct: 68 PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127
Query: 183 FEG-CTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAE 241
F C + N ++ +++ A + E AL F P+ A +WN +ISG+ G E
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPK-RVAFAWNIMISGHAHCGKLE 186
Query: 242 EGLKLFVRMGENGVRWNEHTFASALSACCG-LRNVKCAKEIHSWVLKNGLISNPFVSSGI 300
L LF M E+ + + +TF+S ++AC NV + +H+ +LKNG S + +
Sbjct: 187 SCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSV 246
Query: 301 VDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWT 360
+ Y K + + A L V S +S+I G E+A F EKN+V WT
Sbjct: 247 LSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWT 306
Query: 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILR 420
+ +GY + + E E + K GV +D +L AC+ A L GK IH ++
Sbjct: 307 TMITGYGRNGDGEQALRFFVEMM-KSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIH 365
Query: 421 MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILL 480
G Q + + LV++Y+KCG++ A+ F + +DLV +N M+ + HG ++A+ L
Sbjct: 366 CGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKL 425
Query: 481 FEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540
++ M+ GIKPD VTF+ +L+ H G VE G F SM DY+I E DH CMID++G
Sbjct: 426 YDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFG 485
Query: 541 RANQLEKAIEFM---KSIPTEE-DAVILGSFLNVCRLNRNXXXXXXXXXXXXXXXGNNKA 596
R L +A + S+ T+ + + L C + + + +
Sbjct: 486 RGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVSKVLKIAEPSEEM 545
Query: 597 RYVQLANVYAAEGNWAEMGRIRKQM--RGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKT 654
+V L+N+Y + G W E +R++M RGMK + GCSW+ V +++ F VGD SHP+
Sbjct: 546 SFVLLSNLYCSTGRWKEGEDVRREMVERGMK--KTPGCSWIEVGNQVSTFVVGDSSHPRL 603
Query: 655 NAIYSVLAIFTGEL 668
+ L E+
Sbjct: 604 EELSETLNCLQHEM 617
|
|
| TAIR|locus:2025242 AT1G77010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 192/596 (32%), Positives = 320/596 (53%)
Query: 44 SRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGY 103
S + FD MPER+ +SWN ++S K+ +L AR LF++ P KD+VT NS+L GYI GY
Sbjct: 112 SLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYI-LNGY 170
Query: 104 EADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAV 163
+AL+LF E+ + D T+T+ L C +L + G+Q+HA ++ +
Sbjct: 171 AEEALRLFKEL-----NFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMN 225
Query: 164 SSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELND 223
SSL+++Y+KC A + E E + S +A+++ G + + F R+
Sbjct: 226 SSLVNVYAKCGDLRMASYMLEQIREPDDH-SLSALISGYANCGRVNESRGLFDRKSN-RC 283
Query: 224 AVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHS 283
+ WN++ISGY+ N E L LF M N R + T A+ ++AC GL ++ K++H
Sbjct: 284 VILWNSMISGYIANNMKMEALVLFNEM-RNETREDSRTLAAVINACIGLGFLETGKQMHC 342
Query: 284 WVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRN--SFSISSMIVGYSLQGNM 341
K GLI + V+S ++D+Y KC + E+ L V + + ++SMI Y G +
Sbjct: 343 HACKFGLIDDIVVASTLLDMYSKCGSP--MEACKLFSEVESYDTILLNSMIKVYFSCGRI 400
Query: 342 EEARRHFDSLTEKNVVVWTALFSGYVKAQN-CEALFDLLSEF--VTKEGVVTDALILVIL 398
++A+R F+ + K+++ W ++ +G+ +QN C + L F + K + TD + L +
Sbjct: 401 DDAKRVFERIENKSLISWNSMTNGF--SQNGCTV--ETLEYFHQMHKLDLPTDEVSLSSV 456
Query: 399 LGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDL 458
+ ACA ++L G+++ A +G+ D+ + S+L+D+Y KCG + + +F ++ D
Sbjct: 457 ISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDE 516
Query: 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNS 518
V +N MI+ YA +G +AI LF++M GI+P +TF+ +L+A +CG VE G K F S
Sbjct: 517 VPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFES 576
Query: 519 MTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNXX 578
M D+ P+ +H++CM+DL RA +E+AI ++ +P + D + S L C N
Sbjct: 577 MKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGCVANGYKA 636
Query: 579 XXXXXXXXXXXXXGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSW 634
N YVQL+ ++A G+W +RK MR + G SW
Sbjct: 637 MGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPGSSW 692
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
Identities = 200/669 (29%), Positives = 335/669 (50%)
Query: 1 MRSLNLKEALICHVQAIKAGXXXXXXXXXXXXXXYSKHNLLRESRKLFDEMPERNVFSWN 60
+R +L+ A H I G Y K + L +R+LFDE+ E + +
Sbjct: 25 LRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIART 84
Query: 61 TIISACIKSHDLKQARSLFDSSP--HKDLVTYNSMLCGYI-NAEGYEADALKLFIEMQSA 117
T++S S D+ AR +F+ +P +D V YN+M+ G+ N +GY A + LF +M+
Sbjct: 85 TMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSA--INLFCKMKH- 141
Query: 118 DEHIRMDEFTVTSTL-NLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRC- 175
E + D FT S L L + + Q HA +K+ ++L+ +YSKC
Sbjct: 142 -EGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASS 200
Query: 176 ---YEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLIS 232
A +VF+ E+ S M+ + G ++ + + V++N +IS
Sbjct: 201 PSLLHSARKVFDEILEKDER-SWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMIS 259
Query: 233 GYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLIS 292
GYV G +E L++ RM +G+ +E T+ S + AC ++ K++H++VL+ S
Sbjct: 260 GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS 319
Query: 293 NPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT 352
F +S +V +Y KC + A ++ ++ S ++++ GY G++ EA+ F +
Sbjct: 320 FHFDNS-LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK 378
Query: 353 EKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK 412
EKN++ W + SG + E L S + +EG + +CA+ A G+
Sbjct: 379 EKNILSWMIMISGLAENGFGEEGLKLFS-CMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437
Query: 413 EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHG 472
+ HA +L++G + L+ MY+KCG + A +F+ D V +N +IA HG
Sbjct: 438 QYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHG 497
Query: 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHY 532
H +A+ ++EEML+KGI+PD +T + +L+A H G V+ G KYF+SM Y+I P DHY
Sbjct: 498 HGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY 557
Query: 533 ACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNXXXXXXXXXXXXXXXG 592
A +IDL R+ + A ++S+P + A I + L+ CR++ N
Sbjct: 558 ARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIP 617
Query: 593 NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHP 652
+ Y+ L+N++AA G W E+ R+RK MR + CSW+ +E ++H F V D SHP
Sbjct: 618 EHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHP 677
Query: 653 KTNAIYSVL 661
+ A+Y L
Sbjct: 678 EAEAVYIYL 686
|
|
| TAIR|locus:2047017 AT2G21090 "AT2G21090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 184/570 (32%), Positives = 301/570 (52%)
Query: 97 YINAEGYEADALKLFIEMQSADEH-IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTS 155
+++ +A+ + ++S + IR+ + S L C ++ G+ +H + T
Sbjct: 17 FLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITG 76
Query: 156 NDASGFAVSS-LIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKT 214
+S+ LI MY KC +AC+VF+ NL S N MV+ + G + A
Sbjct: 77 FKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR-NLYSWNNMVSGYVKSGMLVRARVV 135
Query: 215 FWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRN 274
F PE D VSWNT++ GY Q+G+ E L + +G+++NE +FA L+AC R
Sbjct: 136 FDSMPE-RDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQ 194
Query: 275 VKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVG 334
++ ++ H VL G +SN +S I+D Y KC M A+ V++ +++I G
Sbjct: 195 LQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISG 254
Query: 335 YSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALI 394
Y+ G+ME A + F + EKN V WTAL +GYV+ + DL + + GV +
Sbjct: 255 YAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIAL-GVKPEQFT 313
Query: 395 LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI 454
L A A A+L GKEIH Y++R V+ + +IS+L+DMYSK G++ +E +F+
Sbjct: 314 FSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICD 373
Query: 455 ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGE 513
++ D V +N MI+ A HG KA+ + ++M++ ++P+ T V IL+A H G VE G
Sbjct: 374 DKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGL 433
Query: 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL 573
++F SMT + I P+ +HYAC+IDL GRA ++ + ++ +P E D I + L VCR+
Sbjct: 434 RWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRI 493
Query: 574 NRNXXXXXXXXXXXXXXXGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCS 633
+ N + A Y+ L+++YA G W + ++R M+ + N+ S
Sbjct: 494 HGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVS 553
Query: 634 WVYVEHEIHIFTVGDVSHP--KTNAIYSVL 661
W+ +E ++ FTV D SH + IY +L
Sbjct: 554 WIEIEKKVEAFTVSDGSHAHARKEEIYFIL 583
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 191/632 (30%), Positives = 321/632 (50%)
Query: 53 ERNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFI 112
+ ++ WN IS+ +++ +A +F P V+YN M+ GY+ +E A KLF
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFEL-ARKLFD 119
Query: 113 EMQSADE---HIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAV------ 163
EM D ++ + + L +L + R + ++ S A V
Sbjct: 120 EMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSV 179
Query: 164 ------------SSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMA 211
++L+ Y + EEAC +F+ E L+S N ++ ++ ++ A
Sbjct: 180 FDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS-RENWALVSWNCLLGGFVKKKKIVEA 238
Query: 212 LKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG 271
+ F+ + D VSWNT+I+GY Q+G +E +LF E+ V+ + T+ + +S
Sbjct: 239 -RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF---DESPVQ-DVFTWTAMVSGYIQ 293
Query: 272 LRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSM 331
R V+ A+E+ + + +S + +G Y + E M A+ + + RN + ++M
Sbjct: 294 NRMVEEARELFDKMPERNEVSWNAMLAG----YVQGERMEMAKELFDVMPCRNVSTWNTM 349
Query: 332 IVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVT--KEGVV 389
I GY+ G + EA+ FD + +++ V W A+ +GY ++ + F+ L FV +EG
Sbjct: 350 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHS---FEALRLFVQMEREGGR 406
Query: 390 TDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEII 449
+ L CA AL GK++H +++ G + + + L+ MY KCG++ A +
Sbjct: 407 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 466
Query: 450 FQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509
F+ +D+V +N MIA Y+ HG E A+ FE M +G+KPD T VA+LSA H G V
Sbjct: 467 FKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLV 526
Query: 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLN 569
+ G +YF +MT DY + P + HYACM+DL GRA LE A MK++P E DA I G+ L
Sbjct: 527 DKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLG 586
Query: 570 VCRLNRNXXXXXXXXXXXXXXXGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRF 629
R++ N N YV L+N+YA+ G W ++G++R +MR +
Sbjct: 587 ASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 646
Query: 630 AGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL 661
G SW+ ++++ H F+VGD HP+ + I++ L
Sbjct: 647 PGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFL 678
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 1.8e-72, Sum P(2) = 1.8e-72
Identities = 152/486 (31%), Positives = 246/486 (50%)
Query: 191 NLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRM 250
N+ N +V + G M+ A T + + D VSWN +++GY Q G E+ ++LF +M
Sbjct: 263 NMFVGNCLVDMYAKCGMMDEA-NTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321
Query: 251 GENGVRWNEHTFASALSACC----GLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDV--- 303
E ++ + T+++A+S G + +++ S +K ++ V SG V
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381
Query: 304 -YCK---CENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT--EKNVV 357
+ K C + Y + + I+ +I Y+ ++ AR FDSL+ E++VV
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441
Query: 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVT-DALILVILLGACALQAALHPGKEIHA 416
WT + GY + + +LLSE ++ +A + L ACA AAL GK+IHA
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA 501
Query: 417 YILRMGVQMDKKLIST-LVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEE 475
Y LR +S L+DMY+KCG+++ A ++F N + ++ V + ++ Y HG+ E
Sbjct: 502 YALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGE 561
Query: 476 KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACM 535
+A+ +F+EM G K D VT + +L A H G ++ G +YFN M + +SP +HYAC+
Sbjct: 562 EALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACL 621
Query: 536 IDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNXXXXXXXXXXXXXXXGNNK 595
+DL GRA +L A+ ++ +P E V+ +FL+ CR++ N+
Sbjct: 622 VDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHD 681
Query: 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTN 655
Y L+N+YA G W ++ RIR MR + GCSWV F VGD +HP
Sbjct: 682 GSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAK 741
Query: 656 AIYSVL 661
IY VL
Sbjct: 742 EIYQVL 747
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 5.8e-71, Sum P(3) = 5.8e-71
Identities = 117/388 (30%), Positives = 210/388 (54%)
Query: 289 GLISNPFVSSGIVDVYCKCENMNYAESM---LLLKGV-RNSFSISSMIVGYSLQGNMEEA 344
GL++N +G+V + + E++ ++ +G+ R+ F ++++ YS G ++ A
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 459
Query: 345 RRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVT----------DALI 394
R F + ++++V W + +GYV +++ E LL + E V+ +++
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519
Query: 395 LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI 454
L+ +L +CA +AL GKEIHAY ++ + D + S LVDMY+KCG + + +F
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579
Query: 455 ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEK 514
+++++ +NV+I Y HG+ ++AI L M+ +G+KP+ VTF+++ +A H G V+ G +
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639
Query: 515 YFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTE-EDAVILGSFLNVCRL 573
F M DY + P +DHYAC++DL GRA ++++A + M +P + A S L R+
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRI 699
Query: 574 NRNXXXXXXXXXXXXXXXGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCS 633
+ N N + YV LAN+Y++ G W + +R+ M+ + GCS
Sbjct: 700 HNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCS 759
Query: 634 WVYVEHEIHIFTVGDVSHPKTNAIYSVL 661
W+ E+H F GD SHP++ + L
Sbjct: 760 WIEHGDEVHKFVAGDSSHPQSEKLSGYL 787
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 148/469 (31%), Positives = 264/469 (56%)
Query: 196 NAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGV 255
N+++ G+++ A K F E D VSWN++I+G+VQ G ++ L+LF +M V
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKE-KDVVSWNSMINGFVQKGSPDKALELFKKMESEDV 228
Query: 256 RWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAES 315
+ + T LSAC +RN++ +++ S++ +N + N +++ ++D+Y KC ++ A+
Sbjct: 229 KASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKR 288
Query: 316 MLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVK-AQNCEA 374
+ +++ + ++M+ GY++ + E AR +S+ +K++V W AL S Y + + EA
Sbjct: 289 LFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEA 348
Query: 375 LFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLV 434
L + E ++ + + + LV L ACA AL G+ IH+YI + G++M+ + S L+
Sbjct: 349 LI-VFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALI 407
Query: 435 DMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV 494
MYSKCG++ + +F + +RD+ +++ MI A HG +A+ +F +M E +KP+ V
Sbjct: 408 HMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGV 467
Query: 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKS 554
TF + A H G V+ E F+ M ++Y I PE HYAC++D+ GR+ LEKA++F+++
Sbjct: 468 TFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEA 527
Query: 555 IPTEEDAVILGSFLNVCRLNRNXXXXXXXXXXXXXXXGNNKARYVQLANVYAAEGNWAEM 614
+P + G+ L C+++ N N +V L+N+YA G W +
Sbjct: 528 MPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENV 587
Query: 615 GRIRKQMR--GMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL 661
+RK MR G+K + GCS + ++ IH F GD +HP + +Y L
Sbjct: 588 SELRKHMRVTGLK--KEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKL 634
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LHN5 | PP242_ARATH | No assigned EC number | 0.5492 | 0.9852 | 0.9823 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 676 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-116 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-89 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-45 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-35 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 367 bits (943), Expect = e-116
Identities = 199/604 (32%), Positives = 308/604 (50%), Gaps = 74/604 (12%)
Query: 60 NTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYI-NAEGYEADALKLFIEMQSAD 118
N +I+ +K D+ AR +FD P +D +++N+M+ GY N E E L+LF M+ +
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG--LELFFTMR--E 281
Query: 119 EHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEE 178
+ D T+TS ++ C L + GR++H ++VKT +SLI MY + E
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 179 ACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNG 238
A +VF E DAVSW +ISGY +NG
Sbjct: 342 AEKVFSRM---------------------------------ETKDAVSWTAMISGYEKNG 368
Query: 239 DAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSS 298
++ L+ + M ++ V +E T AS LSAC L ++ ++H + GLIS V++
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428
Query: 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVV 358
++++Y KC+ + ++A F ++ EK+V+
Sbjct: 429 ALIEMYSKCKCI-------------------------------DKALEVFHNIPEKDVIS 457
Query: 359 WTALFSGYVKAQNC-EALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAY 417
WT++ +G C EAL +T + +++ L+ L ACA AL GKEIHA+
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQMLLT---LKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 418 ILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKA 477
+LR G+ D L + L+D+Y +CG M YA F N E+D+V +N+++ Y HG A
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMA 573
Query: 478 ILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537
+ LF M+E G+ PD VTF+++L A G V G +YF+SM Y I+P HYAC++D
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633
Query: 538 LYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597
L GRA +L +A F+ +P D + G+ LN CR++R+ EL A + + L+ N+
Sbjct: 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY 693
Query: 598 YVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAI 657
Y+ L N+YA G W E+ R+RK MR GCSWV V+ ++H F D SHP+ I
Sbjct: 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI 753
Query: 658 YSVL 661
+VL
Sbjct: 754 NTVL 757
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 9e-89
Identities = 165/580 (28%), Positives = 268/580 (46%), Gaps = 69/580 (11%)
Query: 94 LCGYIN---AEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAF 150
LC I A G +AL+LF E+ A + T + + C+ L ++ + ++
Sbjct: 90 LCSQIEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWH 148
Query: 151 MVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEM 210
+ + + + ++ ++ M+ KC +A R+F+
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE------------------------- 183
Query: 211 ALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACC 270
PE N SW T+I G V G+ E LF M E+G TF L A
Sbjct: 184 -------MPERN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 271 GLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISS 330
GL + + +++H VLK G++ + FVS ++D+Y KC
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC----------------------- 272
Query: 331 MIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVT 390
G++E+AR FD + EK V W ++ +GY E L E + GV
Sbjct: 273 --------GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE-MRDSGVSI 323
Query: 391 DALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIF 450
D I++ + A L K+ HA ++R G +D + LVD+YSK G M A +F
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 451 QNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVE 510
++L+ +N +IA Y +HG KA+ +FE M+ +G+ P+ VTF+A+LSA R+ G E
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 511 MGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNV 570
G + F SM+ +++I P HYACMI+L GR L++A ++ P + + + L
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503
Query: 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFA 630
CR+++N EL A EKL + YV L N+Y + G AE ++ + ++ +
Sbjct: 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
Query: 631 GCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYE 670
C+W+ V+ + H F GD HP++ IY L E+ E
Sbjct: 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (439), Expect = 3e-45
Identities = 132/474 (27%), Positives = 211/474 (44%), Gaps = 85/474 (17%)
Query: 49 DEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADAL 108
P V N ++S ++ +L A +F P +DL ++N ++ GY A GY +AL
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA-GYFDEAL 172
Query: 109 KLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLID 168
L+ M A +R D +T L C + ++ GR++HA +V+ + V++LI
Sbjct: 173 CLYHRMLWAG--VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 169 MYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWN 228
MY KC G++ A F R P D +SWN
Sbjct: 231 MYVKC--------------------------------GDVVSARLVFDRMP-RRDCISWN 257
Query: 229 TLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKN 288
+ISGY +NG+ EGL+LF M E V + T S +SAC L + + +E+H +V+K
Sbjct: 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317
Query: 289 GLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHF 348
G + V V +S+I Y G+ EA + F
Sbjct: 318 GFAVD-------VSVC------------------------NSLIQMYLSLGSWGEAEKVF 346
Query: 349 DSLTEKNVVVWTALFSGYV------KAQNCEALFDLLSEFVTKEGVVTDALILVILLGAC 402
+ K+ V WTA+ SGY KA AL + + V D + + +L AC
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ-------DNVSPDEITIASVLSAC 399
Query: 403 ALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYN 462
A L G ++H R G+ + + L++MYSKC + A +F N E+D++ +
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459
Query: 463 VMIA--CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEK 514
+IA + E A++ F +ML +KP++VT +A LSA G++ G++
Sbjct: 460 SIIAGLRLNNRCFE--ALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKE 510
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-41
Identities = 109/417 (26%), Positives = 189/417 (45%), Gaps = 55/417 (13%)
Query: 174 RCYEEACRVFEGCTEEVNLIS---KNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTL 230
R EE RV + NAM++ R GE+ A F + PE D SWN L
Sbjct: 100 RAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE-RDLFSWNVL 158
Query: 231 ISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGL 290
+ GY + G +E L L+ RM GVR + +TF L C G+ ++ +E+H+ V++ G
Sbjct: 159 VGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218
Query: 291 ISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDS 350
+ V + ++ +Y KC G++ AR FD
Sbjct: 219 ELDVDVVNALITMYVKC-------------------------------GDVVSARLVFDR 247
Query: 351 LTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEG--VVTDALILVILLGACALQAAL 408
+ ++ + W A+ SGY + C +L F T V D + + ++ AC L
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLEL---FFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACY 468
G+E+H Y+++ G +D + ++L+ MY G+ AE +F +D V + MI+ Y
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 469 AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE 528
+G +KA+ + M + + PD +T ++LSA G +++G K ++++
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-------HELAER 417
Query: 529 TDHYA------CMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLN-RNAE 578
+ +I++Y + ++KA+E +IP E+D + S + RLN R E
Sbjct: 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 4e-36
Identities = 137/566 (24%), Positives = 223/566 (39%), Gaps = 157/566 (27%)
Query: 1 MRSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWN 60
++S+ +A+ HV +G N+++ ++ K +L ++R+LFDEMPERN+ SW
Sbjct: 136 LKSIRCVKAVYWHV--ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWG 193
Query: 61 TIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEM--QSAD 118
TII G ++A Y A LF EM +D
Sbjct: 194 TIIG-------------------------------GLVDAGNYRE-AFALFREMWEDGSD 221
Query: 119 EHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEE 178
R L L + G+QLH ++KT F +LIDMYSKC E+
Sbjct: 222 AEPRT----FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277
Query: 179 ACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNG 238
A VF+G M KT V+WN++++GY +G
Sbjct: 278 ARCVFDG------------------------MPEKT---------TVAWNSMLAGYALHG 304
Query: 239 DAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSS 298
+EE L L+ M ++GV ++ TF+ + L ++ AK+ H+ +++ G + ++
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVV 358
+VD+Y K G ME+AR FD + KN++
Sbjct: 365 ALVDLYSK-------------------------------WGRMEDARNVFDRMPRKNLIS 393
Query: 359 WTALFSGYV---KAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIH 415
W AL +GY + +F E + EGV + + + +L AC G EI
Sbjct: 394 WNALIAGYGNHGRGTKAVEMF----ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI- 448
Query: 416 AYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEE 475
S + K M YA MI G +
Sbjct: 449 -------------FQSMSENHRIKPRAMHYA----------------CMIELLGREGLLD 479
Query: 476 KAILLFEEMLEKG-IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTAD--YKISPET-DH 531
+A M+ + KP + A+L+A R ++E+G + A+ Y + PE ++
Sbjct: 480 EAY----AMIRRAPFKPTVNMWAALLTACRIHKNLELGR-----LAAEKLYGMGPEKLNN 530
Query: 532 YACMIDLY---GRANQLEKAIEFMKS 554
Y +++LY GR + K +E +K
Sbjct: 531 YVVLLNLYNSSGRQAEAAKVVETLKR 556
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-35
Identities = 130/556 (23%), Positives = 211/556 (37%), Gaps = 147/556 (26%)
Query: 13 HVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDL 72
H +K G + N LI +Y E+ K+F M ++ SW +IS K
Sbjct: 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK---- 366
Query: 73 KQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTL 132
+ P K L TY M E D + DE T+ S L
Sbjct: 367 -------NGLPDKALETYALM----------EQDNVS-------------PDEITIASVL 396
Query: 133 NLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNL 192
+ C L ++ G +LH + + ++LI+MYSKC+C ++A VF
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH-------- 448
Query: 193 ISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGE 252
PE D +SW ++I+G N E L F +M
Sbjct: 449 ------------------------NIPE-KDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 253 NGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNY 312
++ N T +ALSAC + + C KEIH+ VL+ G+ + F+ + ++D+Y +C MNY
Sbjct: 484 T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 313 AESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNC 372
A N F + EK+VV W L +GYV
Sbjct: 543 A---------WNQF-----------------------NSHEKDVVSWNILLTGYVAHGKG 570
Query: 373 EALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEI-HAYILRMGVQMDKKLIS 431
+L + V + GV D + + LL AC+ + G E H+ + + + K +
Sbjct: 571 SMAVELFNRMV-ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629
Query: 432 TLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP 491
+VD+ + G +T A NFI + I P
Sbjct: 630 CVVDLLGRAGKLTEA----YNFINK------------------------------MPITP 655
Query: 492 DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD---HYACMIDLY---GRANQL 545
D + A+L+A R VE+GE + A + + + +Y + +LY G+ +++
Sbjct: 656 DPAVWGALLNACRIHRHVELGE-----LAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710
Query: 546 EKAIEFMKSIPTEEDA 561
+ + M+ D
Sbjct: 711 ARVRKTMRENGLTVDP 726
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 1e-21
Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 32/285 (11%)
Query: 228 NTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLK 287
N+ + +G E+ LKL M E V +E + + C R V+ + S L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 288 NGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRH 347
S L GVR ++ SM V + G + A
Sbjct: 115 ---------------------------SHPSL-GVRLGNAMLSMFVRF---GELVHAWYV 143
Query: 348 FDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAA 407
F + E+++ W L GY KA + L + GV D +L C
Sbjct: 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPD 202
Query: 408 LHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIAC 467
L G+E+HA+++R G ++D +++ L+ MY KCG++ A ++F RD + +N MI+
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 468 YAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMG 512
Y +G + + LF M E + PD +T +++SA G +G
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 8e-12
Identities = 53/248 (21%), Positives = 99/248 (39%), Gaps = 43/248 (17%)
Query: 329 SSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGV 388
+S + G +E+A + +S+ E V V
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPV------------------------------ 84
Query: 389 VTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEI 448
D V L C + A+ G + + L + +L + ++ M+ + G + +A
Sbjct: 85 --DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142
Query: 449 IFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS 508
+F ERDL +NV++ YA G+ ++A+ L+ ML G++PD TF +L R CG
Sbjct: 143 VFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL---RTCGG 199
Query: 509 V---EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEE----DA 561
+ G + ++ + + D +I +Y + + A +P + +A
Sbjct: 200 IPDLARG-REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258
Query: 562 VILGSFLN 569
+I G F N
Sbjct: 259 MISGYFEN 266
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503
D+V YN +I Y G E+A+ LF EM ++GIKP+ T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-11
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 223 DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACC 270
D V++NTLI GY + G EE LKLF M + G++ N +T++ + C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-07
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA 493
V YN +I G E+A+ LF+EM E+GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 55 NVFSWNTIISACIKSHDLKQARSLFDS------SPHKDLVTYNSMLCGY 97
+V ++NT+I K +++A LF+ P ++ TY+ ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP--NVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 23/191 (12%)
Query: 385 KEGVVTDA-----LILV-------ILLGACALQAALHPGKEIHAYILRMGVQMDKKLIST 432
K+ V +A LI +L+ CA + + + G++ D KL +T
Sbjct: 418 KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTT 477
Query: 433 LVDMYSKCGNMTYAEIIFQNF-------IERDLVLYNVMIACYAHHGHEEKAILLFEEML 485
L+ +K G + + +F+ F +E ++ + +I A G KA + M
Sbjct: 478 LISTCAKSGKV---DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 486 EKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK-ISPETDHYACMIDLYGRANQ 544
K +KPD V F A++SA G+V+ M A+ I P+ ++ A Q
Sbjct: 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 545 LEKAIEFMKSI 555
+++A E + I
Sbjct: 595 VDRAKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGV 255
V++N+LISGY + G EE L+LF M E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 51/244 (20%), Positives = 113/244 (46%), Gaps = 12/244 (4%)
Query: 324 NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNV----VVWTALFSGYVKAQNCEALFDLL 379
N + ++I G + G + +A + + KNV VV+ AL S ++ + FD+L
Sbjct: 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565
Query: 380 SEFVTKEG--VVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMY 437
+E + E + D + + L+ ACA + KE++ I ++ ++ + V+
Sbjct: 566 AE-MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 438 SKCGNMTYAEIIFQNFIER----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA 493
S+ G+ +A I+ + ++ D V ++ ++ H G +KA + ++ ++GIK
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMK 553
V++ +++ A + + + + + + + K+ P +I NQL KA+E +
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 554 SIPT 557
+
Sbjct: 744 EMKR 747
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGI 489
V YN +I+ Y G E+A+ LF+EM EKG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 76/373 (20%), Positives = 132/373 (35%), Gaps = 83/373 (22%)
Query: 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPELN---DAVSWNTLISGYVQNGDAEEGLK 245
E N+ + A++ C R G++ A + N D V +N LIS Q+G +
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 246 LFVRMGENG--VRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDV 303
+ M + + T + + AC V AKE++ + + + P V + V+
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN- 622
Query: 304 YCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALF 363
C S +G+ + A +D + +K V F
Sbjct: 623 SC------------------------------SQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 364 SGYVK----AQNCEALFDLLSEFVTKEGVVTDALILVILLGACA----LQAALHPGKEIH 415
S V A + + F++L + K+G+ + L+GAC+ + AL ++I
Sbjct: 653 SALVDVAGHAGDLDKAFEILQD-ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 416 AYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEE 475
+ LR V LI+ L + GN
Sbjct: 712 SIKLRPTVSTMNALITALCE-----GNQL------------------------------P 736
Query: 476 KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACM 535
KA+ + EM G+ P+ +T+ +L A ++G + D I P C+
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCI 795
Query: 536 IDLYGRANQLEKA 548
L R + EKA
Sbjct: 796 TGLCLR--RFEKA 806
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 4e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP 491
L YN ++ A G + A+ + EEM G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 25 TITTNQLIHIYSKHNLLRESRKLFDEMPER----NVFSWNTIISACIK 68
+T N LI Y K + E+ KLF+EM +R NV++++ +I K
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNE 259
V++NTLI G + G EE L+LF M E G+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 85 KDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLN-LC 135
D+VTYN+++ GY E +ALKLF EM+ I+ + +T + ++ LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVE-EALKLFNEMKKRG--IKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 223 DAVSWNTLISGYVQNGDAEEGLKLFVRM 250
D V++NTLI G + G +E ++L M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 676 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.44 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.23 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.21 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.15 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.03 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.03 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.02 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.98 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.94 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.94 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.9 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.83 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.61 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.6 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.41 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.36 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.26 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.24 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.24 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.23 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.23 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.14 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.07 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.03 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.8 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.7 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.7 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.66 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.64 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.64 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.62 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.51 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.49 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.41 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.38 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.36 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.35 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.34 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.33 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.28 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.21 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.2 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.17 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.16 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.15 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.14 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.09 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.0 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.99 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.96 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.92 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.91 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.86 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.86 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.86 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.81 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.8 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.79 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.77 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.75 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.63 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.6 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.51 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.42 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.2 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.18 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.1 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.01 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.95 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.59 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.47 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.3 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 95.21 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.1 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.09 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.02 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.81 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.7 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.68 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.55 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.41 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.4 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.26 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.21 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.17 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.07 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.95 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.78 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.62 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.58 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.51 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.19 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.18 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.98 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.66 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.64 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.6 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.3 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.21 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.19 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.07 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.95 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.92 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.82 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.66 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.65 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.45 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.26 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.95 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.65 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.17 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.02 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.98 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.77 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.67 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.64 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.34 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.19 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.05 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 88.82 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.77 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.49 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.09 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.92 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.68 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.57 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.51 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.36 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.15 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.04 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.01 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.89 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.82 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.69 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.42 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.38 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.38 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.3 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.85 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.54 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.43 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.76 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.57 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 83.07 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.73 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.44 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 82.32 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 82.12 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.11 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.28 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.04 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.0 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 80.66 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.38 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-94 Score=792.15 Aligned_cols=666 Identities=28% Similarity=0.462 Sum_probs=612.9
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHH
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE----RNVFSWNTIISACIKSHDLKQARS 77 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~ 77 (676)
+.|++++|.++|+.|.+.|++|+..+|..++.+|.+.+.++.+.+++..+.+ +++..+|+++..|++.|+++.|.+
T Consensus 63 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~ 142 (857)
T PLN03077 63 SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142 (857)
T ss_pred hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHH
Confidence 6799999999999999999999999999999999999999999999987653 788899999999999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCC
Q 005802 78 LFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSND 157 (676)
Q Consensus 78 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (676)
+|++|++||..+||++|.+|++.|+++ +|+++|++|.. .|+.||..||+.++++|+..+++..+.+++..+.+.|+.
T Consensus 143 ~f~~m~~~d~~~~n~li~~~~~~g~~~-~A~~~f~~M~~--~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~ 219 (857)
T PLN03077 143 VFGKMPERDLFSWNVLVGGYAKAGYFD-EALCLYHRMLW--AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219 (857)
T ss_pred HHhcCCCCCeeEHHHHHHHHHhCCCHH-HHHHHHHHHHH--cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 99999999999 899999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCC---CCCeeeHHHHHHHH
Q 005802 158 ASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPE---LNDAVSWNTLISGY 234 (676)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~ 234 (676)
|+..+|++|+.+|++.|++++|.++|++|.. ++..+|+++|.+|++.|+.++|+++|.+|.. .||..+|+.+|.++
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 9999999999999999999999999999984 6899999999999999999999999988854 67777777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC-------------------------------CCChHHHHHHHH
Q 005802 235 VQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG-------------------------------LRNVKCAKEIHS 283 (676)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------------------------------~~~~~~a~~~~~ 283 (676)
++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++ .|++++|.++|+
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 7666666666666666666666666655555555554 555555555566
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcC----CCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhH
Q 005802 284 WVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKG----VRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVW 359 (676)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (676)
+|.+.|+.||..+|+.++.+|++.|+++.|.+++..+. .++..++++|+.+|++.|++++|.++|++|.++|..+|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~ 458 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISW 458 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeH
Confidence 66666666666666666666666666666666655443 25677888999999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 005802 360 TALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK 439 (676)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (676)
|++|.+|++.|+.++|+.+|++| .. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.++..++++|+++|++
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m-~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQM-LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 99999999999999999999999 43 69999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 440 CGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
+|++++|.++|+.+ .+|+.+||++|.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|
T Consensus 537 ~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 537 CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 520 TADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 520 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
.+++|+.|+..+|++++++|++.|++++|.+++++|+.+|+..+|.+++.+|..+|+.+.++.+.+++.++.|+++..|.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 87779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005802 600 QLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAGA 674 (676)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (676)
.|+++|...|+|++|.++.+.|++.|++++||+||+++++++|.|.+||++||+..+||..|+.|..+|++.||+
T Consensus 696 ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 696 LLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLA 770 (857)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-77 Score=641.91 Aligned_cols=524 Identities=29% Similarity=0.507 Sum_probs=498.7
Q ss_pred CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchh
Q 005802 84 HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAV 163 (676)
Q Consensus 84 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (676)
.++..+|+.+|.++.+.|++. +|+++|+.|... .+..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~-~Al~~f~~m~~~-~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~--- 158 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHR-EALELFEILEAG-CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ--- 158 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHH-HHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch---
Confidence 456779999999999999999 999999999872 347899999999999999999999999999999999765554
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHH
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEG 243 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (676)
.+++.++++|++.|++++|.++|++|+ .||..+||.+|.+|++.|++++|
T Consensus 159 -----------------------------~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A 208 (697)
T PLN03081 159 -----------------------------YMMNRVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREA 208 (697)
T ss_pred -----------------------------HHHHHHHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHH
Confidence 455566666666666666677777776 78999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 005802 244 LKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR 323 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 323 (676)
+++|++|.+.|+.||..||..++.+|+..|..+.+.+++..+.+.|+.||..+++.|+++|+++|++++|.
T Consensus 209 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~--------- 279 (697)
T PLN03081 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR--------- 279 (697)
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHH
Q 005802 324 NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACA 403 (676)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 403 (676)
++|++|.++|+.+||+++.+|++.|++++|+++|++| ...|+.||..||+.++.+|+
T Consensus 280 ----------------------~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M-~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 280 ----------------------CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred ----------------------HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 88999999999999999999
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEE 483 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 483 (676)
+.|.++.|.+++..|.+.|++|+..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHH
Q 005802 484 MLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVI 563 (676)
Q Consensus 484 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 563 (676)
|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++++++|++.|++++|.+++++|+..|+..+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999999999999988789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEE
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHI 643 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (676)
|++++.+|..+|+++.|..+++++.+..|++...|..|+++|.+.|+|++|.++++.|++.|+++.||+||+++.+++|.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~ 576 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHS 576 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHHhcCCC
Q 005802 644 FTVGDVSHPKTNAIYSVLAIFTGELYEIAGA 674 (676)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (676)
|++||++||+..+|+..+.++..+|++.||+
T Consensus 577 f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 577 FFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred EccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-72 Score=620.98 Aligned_cols=584 Identities=18% Similarity=0.242 Sum_probs=551.6
Q ss_pred CCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHHHhccCC----CCCcccHH
Q 005802 20 GLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE----RNVFSWNTIISACIKSHDLKQARSLFDSSP----HKDLVTYN 91 (676)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 91 (676)
...|+..+++.++.+|++.|++++|..+|+.|.+ |+..+|..++..+.+.+.++.+..++..+. .++...+|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 3467888999999999999999999999999976 788999999999999999999999997654 57888999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhh
Q 005802 92 SMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYS 171 (676)
Q Consensus 92 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (676)
.|+..|++.|+.. .|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|+.|...|+.||..||++++.+++
T Consensus 126 ~li~~~~~~g~~~-~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 126 AMLSMFVRFGELV-HAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHhCCChH-HHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 9999999999999 99999999963 7899999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHhhhhcCC---CCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 005802 172 KCRCYEEACRVFEGCTE---EVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFV 248 (676)
Q Consensus 172 ~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 248 (676)
..+++..+.+++..+.. .|+..++++++.+|++.|++++|.++|++|+ .||..+||++|.+|++.|++++|+++|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999987765 6899999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhH
Q 005802 249 RMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSI 328 (676)
Q Consensus 249 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 328 (676)
+|...|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|+.++.+|+++|+++.|.++|+.+..||..+|
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~ 357 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh
Q 005802 329 SSMIVGYSLQGNMEEARRHFDSLT----EKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL 404 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 404 (676)
++++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.+.|.+++..| ...|+.|+..+++.++..|++
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~-~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA-ERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999985 388999999999999999999999999999 889999999999999999999
Q ss_pred hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHH
Q 005802 405 QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLF 481 (676)
Q Consensus 405 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 481 (676)
.|++++|.++|+.|. .+|..+|+++|.+|++.|+.++|..+|++|. +||..+|+.++.+|++.|..+.+.+++
T Consensus 437 ~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 437 CKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred cCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999885 4678899999999999999999999999986 689999999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CC
Q 005802 482 EEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---TE 558 (676)
Q Consensus 482 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 558 (676)
..|.+.|+.||..+++.|+.+|++.|++++|.++|+.+ .||..+|++++.+|++.|+.++|+++|++|. ..
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999877 4799999999999999999999999999987 68
Q ss_pred CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc--cCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 559 EDAVILGSFLNVCRLNRNAELAGEAEEKLLRL--EGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
||..+|..++.+|.+.|++++|.++|+.|.+. ..++...|..++.+|.+.|++++|.+++++|.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999854 23346789999999999999999999999984
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-67 Score=562.76 Aligned_cols=523 Identities=15% Similarity=0.216 Sum_probs=476.4
Q ss_pred hCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCC-----CcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHH
Q 005802 19 AGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPER-----NVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSM 93 (676)
Q Consensus 19 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 93 (676)
....++...|..++..|++.|++++|.++|++|.++ +...++.++..|.+.|.+++|..+|+.|..||..+|+.+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 345677888999999999999999999999999874 445677788889999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhc
Q 005802 94 LCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKC 173 (676)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (676)
|.+|++.|+.+ .|.++|++|.+ .|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.
T Consensus 444 L~a~~k~g~~e-~A~~lf~~M~~--~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 444 MSVCASSQDID-GALRVLRLVQE--AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHhCcCHH-HHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999 99999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhhhcCC---CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-----CCCeeeHHHHHHHHHhcCChhHHHH
Q 005802 174 RCYEEACRVFEGCTE---EVNLISKNAMVAACCREGEMEMALKTFWRQPE-----LNDAVSWNTLISGYVQNGDAEEGLK 245 (676)
Q Consensus 174 g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~ 245 (676)
|++++|.++|+.|.. .|+..+|+.+|.+|++.|++++|.++|++|.. .||..+|+++|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999976 68999999999999999999999999998852 6899999999999999999999999
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---
Q 005802 246 LFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--- 322 (676)
Q Consensus 246 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--- 322 (676)
+|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..+..
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred -CCchhHHHHHHHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHH
Q 005802 323 -RNSFSISSMIVGYSLQGNMEEARRHFDSLT----EKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVI 397 (676)
Q Consensus 323 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 397 (676)
|+..+|+++|.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++|.++|++| ...|+.||..||+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM-~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-KRLGLCPNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCCHHHHHH
Confidence 789999999999999999999999999995 589999999999999999999999999999 88999999999999
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHH
Q 005802 398 LLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 398 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 477 (676)
++.+|++.|+++.|..++..|.+.|+.||..+|++++.+|.+ .+++|..+.+.+...+. .......+..+.|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~------g~~~~~n~w~~~A 831 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS------GRPQIENKWTSWA 831 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc------cccccccchHHHH
Confidence 999999999999999999999999999999999999976542 45555554433321110 0011112334679
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 478 ILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
+.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|++|++++.+. .++|..++++|.
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 999999999999999999999999888999999999999998665 7888899999999998532 478999999997
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=535.53 Aligned_cols=504 Identities=17% Similarity=0.216 Sum_probs=458.0
Q ss_pred CCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCC-CCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHH
Q 005802 121 IRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSND-ASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMV 199 (676)
Q Consensus 121 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 199 (676)
..++...|..++..+.+.|+++.|.++|+.|.+.|+. ++..+++.++..|.+.|.+++|.++++.|.. |+..+|+.++
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL 444 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLM 444 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 4557778888888999999999999999999998864 5556778888999999999999999998886 8999999999
Q ss_pred HHHHhcCChhHHHHHHhhCCC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChH
Q 005802 200 AACCREGEMEMALKTFWRQPE---LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVK 276 (676)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 276 (676)
.+|++.|+++.|.++|+.|.. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 999999999999999988864 68999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcC------CCCchhHHHHHHHHHhcCCHHHHHHHHhc
Q 005802 277 CAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKG------VRNSFSISSMIVGYSLQGNMEEARRHFDS 350 (676)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (676)
+|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.+++..|. .||..+|++++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998874 47889999999999999999999999999
Q ss_pred cCC----CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCC
Q 005802 351 LTE----KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMD 426 (676)
Q Consensus 351 ~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 426 (676)
|.+ |+..+|+.+|.+|++.|++++|.++|++| ...|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 976 56789999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFI----ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
..+|++||.+|+++|++++|.++|++|. .||..+|++||.+|++.|++++|.++|++|...|+.||..||+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999994 689999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----c-------------------CCHHHHHHHHHhCC---
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----A-------------------NQLEKAIEFMKSIP--- 556 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~--- 556 (676)
|++.|++++|.++++.|.+. |+.||..+|++++..|.+ + +..++|..+|++|.
T Consensus 764 ~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 99999999999999999877 999999999999876432 2 23467999999998
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-cCCCCccHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCcccC
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL-EGNNKARYVQLANVYAAEGNW-AEMGRIRKQMRGMKGNRFA 630 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~ 630 (676)
..|+..+|..++.++...+..+.+..+++.+... .+.+..+|..|++.+ |++ ++|..++++|.+.|+.+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 7899999999998888888899998888877644 566778899999987 443 6899999999999986544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-63 Score=530.32 Aligned_cols=456 Identities=21% Similarity=0.364 Sum_probs=415.1
Q ss_pred CCCChHHHHHHHHHHHHhC-CCCCcccHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHH
Q 005802 2 RSLNLKEALICHVQAIKAG-LTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE----RNVFSWNTIISACIKSHDLKQAR 76 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~ 76 (676)
+.|++++|+++|+.|...+ +.|+..+|+.++.+|++.++++.+.+++..|.+ ||+.+||.++.+|++.|+++.|.
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 5688999999999998764 778999999999999999999999999988863 88899999999999999999999
Q ss_pred HHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 005802 77 SLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSN 156 (676)
Q Consensus 77 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 156 (676)
++|++|++||..+||+++.+|++.|+.+ +|+++|++|.+ .|+.||..+|+.++.+|++.|..+.+.+++..+.+.|.
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~-~A~~lf~~M~~--~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYR-EAFALFREMWE--DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHH-HHHHHHHHHHH--hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999 99999999998 88999999999999999999999999999999999876
Q ss_pred CCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHh
Q 005802 157 DASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQ 236 (676)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~ 236 (676)
.||..+ +++|+++|++.|++++|.++|++|+ .+|+.+||.+|.+|++
T Consensus 256 ~~d~~~--------------------------------~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~ 302 (697)
T PLN03081 256 VGDTFV--------------------------------SCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYAL 302 (697)
T ss_pred Ccccee--------------------------------HHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHh
Confidence 665554 5555555555555555566666666 6799999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 237 NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.|+++|+++|+++.|.
T Consensus 303 ~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~-- 380 (697)
T PLN03081 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR-- 380 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHH
Q 005802 317 LLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILV 396 (676)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 396 (676)
++|++|.++|..+||+||.+|++.|+.++|+++|++| ...|+.||..||+
T Consensus 381 -----------------------------~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~ 430 (697)
T PLN03081 381 -----------------------------NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFL 430 (697)
T ss_pred -----------------------------HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCCHHHHH
Confidence 9999999999999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC-CCCcchHHHHHHHHHHcCCh
Q 005802 397 ILLGACALQAALHPGKEIHAYILR-MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI-ERDLVLYNVMIACYAHHGHE 474 (676)
Q Consensus 397 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 474 (676)
.++.+|++.|.+++|..+|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++++ +|+..+|++|+.+|..+|++
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999986 6999999999999999999999999999999997 78999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC
Q 005802 475 EKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE 528 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 528 (676)
+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.++ |+.+.
T Consensus 511 ~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 511 ELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred HHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 999999999975 5564 679999999999999999999999999877 77543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=342.66 Aligned_cols=574 Identities=12% Similarity=0.042 Sum_probs=282.3
Q ss_pred HHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCCChhHH
Q 005802 34 IYSKHNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDSSPH---KDLVTYNSMLCGYINAEGYEADA 107 (676)
Q Consensus 34 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a 107 (676)
.+...|++++|...|+++.+ .+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|+++ +|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE-KA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHH-HH
Confidence 33344444444444444332 1223334444444445555555554444331 22334444444555555555 55
Q ss_pred HHHHHHhHhccCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhc
Q 005802 108 LKLFIEMQSADEHIRM-DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGC 186 (676)
Q Consensus 108 ~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 186 (676)
.+.|+++.+ ..| +...+..+...+...|+.+.|...++.+.+..... ......++..+.+.|++++|..+++.+
T Consensus 383 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 457 (899)
T TIGR02917 383 AEYLAKATE----LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKL 457 (899)
T ss_pred HHHHHHHHh----cCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555555443 122 22333444444445555555555555544432111 122334444555555555555555544
Q ss_pred CC--CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHH
Q 005802 187 TE--EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTF 262 (676)
Q Consensus 187 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 262 (676)
.. +.+..++..+...+...|++++|.+.|++... +.+...+..+...+...|++++|...|+.+...+ +.+..++
T Consensus 458 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 536 (899)
T TIGR02917 458 EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAI 536 (899)
T ss_pred HHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHH
Confidence 33 22344455555555555555555555544321 2233344444455555555555555555554432 1233444
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcC
Q 005802 263 ASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQG 339 (676)
Q Consensus 263 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~ 339 (676)
..+...+...|+.++|...++.+.+.+ +.+...+..+...|.+.|+++.|...++.+.. .+...|..+...+...|
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 455555555555555555555554443 22334444555555555555555555554432 23344555555555555
Q ss_pred CHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHH
Q 005802 340 NMEEARRHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHA 416 (676)
Q Consensus 340 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 416 (676)
++++|...|+.+.+ .+...+..+...+.+.|++++|...|++++. ..+.+..++..+...+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555432 1333455555555555555555555555421 122234445555555555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 005802 417 YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV 494 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 494 (676)
.+.+.. +.+...+..+...+...|++++|...|+.+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+..
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 555443 3344445555555555555555555555543 2333444455555555555555555555555532 22344
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR 572 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 572 (676)
.+..+...|...|++++|..+|+++.+. .+++...+..+...+...|+ ++|+++++++. .+.++..+..+..++.
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 5555555555555555555555555432 12235555555555555555 55555555544 2334445555555555
Q ss_pred HhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
..|++++|...++++++..|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55566666666666665555555555555666666666666665555553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=335.95 Aligned_cols=610 Identities=14% Similarity=0.074 Sum_probs=434.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHH
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--R-NVFSWNTIISACIKSHDLKQARSL 78 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~ 78 (676)
+.|++++|.+.|+.+.+.. +.++.++..++..+...|++++|...++.+.+ | +...+......+.+.|++++|...
T Consensus 205 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (899)
T TIGR02917 205 SLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET 283 (899)
T ss_pred hcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 4678888888888887765 45667777777777778888888777776643 2 112222222233344555555555
Q ss_pred hccCCC------------------------------------C-CcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCC
Q 005802 79 FDSSPH------------------------------------K-DLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHI 121 (676)
Q Consensus 79 ~~~~~~------------------------------------~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~ 121 (676)
|+.+.+ | +...+..+...+.+.|+.. +|...++.+.+ . .
T Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~--~-~ 359 (899)
T TIGR02917 284 LQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVD-EAIATLSPALG--L-D 359 (899)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHH-HHHHHHHHHHh--c-C
Confidence 544321 1 2333444555555556665 66666665553 1 1
Q ss_pred CCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHH
Q 005802 122 RMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMV 199 (676)
Q Consensus 122 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~ 199 (676)
..+...+..+...+...|+++.|.++++.+.+... .+...+..+...+...|++++|.+.++.... +........++
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence 22444555556666666666666666666655421 1223455555666666666666666655443 12233445556
Q ss_pred HHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHH
Q 005802 200 AACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKC 277 (676)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 277 (676)
..+.+.|++++|..+++.+.. +++..+|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 666777777777777766543 3355667777777777888888888887777632 2234456666677777888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 005802 278 AKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE- 353 (676)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 353 (676)
|...++.+.+.+ +.+..++..+...+.+.|+.++|...+.+... .+...+..+...+...|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 888888777664 34566777777888888888888887776643 2445666777888888888888888887764
Q ss_pred --CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHH
Q 005802 354 --KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLIS 431 (676)
Q Consensus 354 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 431 (676)
.+...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+.. +.+...+.
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345678888888888888888888888874322 3355667777778888888888888888887754 45577788
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS 508 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 508 (676)
.++..+...|++++|.++++.+.. .+...+..+...+...|++++|.+.|+++... .|+..++..+..++...|+
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCC
Confidence 888888888888888888888763 35567777888888999999999999998885 4555777788888999999
Q ss_pred HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 509 VEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
+++|.+.++.+... .+.+...+..+...|.+.|++++|.+.|+++. .++++..+..+...+...|+ ++|+..+++
T Consensus 752 ~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 752 TAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 99999999988764 23458888899999999999999999999987 56678889999999999999 889999999
Q ss_pred HHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 587 LLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 587 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.+..|+++..+..++.+|...|++++|.++++++.+.++.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999987653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-26 Score=261.42 Aligned_cols=603 Identities=11% Similarity=0.024 Sum_probs=446.6
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--CCcchH-----------------HHH
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--RNVFSW-----------------NTI 62 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-----------------~~l 62 (676)
..++.+.|.+.+.++.... +.++.++..++..+...|+.++|.+.+++..+ |+...+ ..+
T Consensus 40 ~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 4678999999999999877 55788999999999999999999999999875 443222 223
Q ss_pred HHHHHhcCChHHHHHHhccCCC--CCcccHH-HHHHH-HHhcCCChhHHHHHHHHhHhccCCCCC-ChhhHHHHHHHHHc
Q 005802 63 ISACIKSHDLKQARSLFDSSPH--KDLVTYN-SMLCG-YINAEGYEADALKLFIEMQSADEHIRM-DEFTVTSTLNLCVK 137 (676)
Q Consensus 63 l~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~ll~~-~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~ 137 (676)
...+.+.|++++|...|+...+ |+..... ..... ....|+.. +|++.|+++.+ ..| +......+...+..
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~-~A~~~L~~ll~----~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP-EAINQLQRLNA----DYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH-HHHHHHHHHHH----hCCCCHHHHHHHHHHHHc
Confidence 4467889999999999998763 3322211 11122 22357888 99999999987 345 45567788888899
Q ss_pred cCCcHHHHHHHHHHHHhcCCC----------------CCc---hhhHHHHHhhhccchHHHHHhhhhcCCC-Cchh-hHH
Q 005802 138 LLNVGFGRQLHAFMVKTSNDA----------------SGF---AVSSLIDMYSKCRCYEEACRVFEGCTEE-VNLI-SKN 196 (676)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~----------------~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~ 196 (676)
.|+.++|.+.++.+.+..... +.. .+...+..+-.....+.|...++..... .++. ...
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 999999999999986642110 000 1112222222233344555555443321 1111 112
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC-CC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHH---------H-
Q 005802 197 AMVAACCREGEMEMALKTFWRQPE-LN-DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTF---------A- 263 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~---------~- 263 (676)
.....+...|++++|+..|++... .| +...+..+...+.+.|++++|+..|++..+..... +...+ .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 334567788999999999987653 33 67788899999999999999999999998743221 11111 1
Q ss_pred --HHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhc
Q 005802 264 --SALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQ 338 (676)
Q Consensus 264 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 338 (676)
.....+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|++... | +...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 12345678999999999999999875 34566778889999999999999999998775 3 3445666666664 5
Q ss_pred CCHHHHHHHHhccCCCC------------chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhc
Q 005802 339 GNMEEARRHFDSLTEKN------------VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQA 406 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 406 (676)
++.++|..+++.+.... ...+..+...+...|++++|+..|++.+... +-+...+..+...+...|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 68899999998876421 1234556778889999999999999974332 334566777888899999
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC----c---------chHHHHHHHHHHcCC
Q 005802 407 ALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD----L---------VLYNVMIACYAHHGH 473 (676)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~ 473 (676)
++++|...++.+.+.. +.++..+..+...+...++.++|...++.+.... . ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988754 4455555566667788999999999999886431 1 112345677889999
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 005802 474 EEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFM 552 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 552 (676)
.++|..+++. .+++...+..+...+.+.|++++|...|+...+. .|+ ...+..++..|...|++++|++.+
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999872 2445566777888999999999999999999853 455 888999999999999999999999
Q ss_pred HhCC-CC-CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc------cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 553 KSIP-TE-EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA------RYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 553 ~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+... .. .+...+..+..++...|++++|.+++++++...|+++. .+..++.++...|++++|+..++....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887 33 45667777888999999999999999999988766543 566779999999999999999999864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-25 Score=252.03 Aligned_cols=584 Identities=11% Similarity=0.007 Sum_probs=429.3
Q ss_pred HHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhccCCC--CCcccH------------
Q 005802 28 TNQLIHIYSKHNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDSSPH--KDLVTY------------ 90 (676)
Q Consensus 28 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~------------ 90 (676)
.-..++.+-..++.+.|.+.++++.. .|+..+..+...+.+.|+.++|.+.++...+ |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 44445666778999999999999865 4667888899999999999999999998763 544332
Q ss_pred -----HHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhh-HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhh
Q 005802 91 -----NSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFT-VTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVS 164 (676)
Q Consensus 91 -----~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (676)
-.+.+.+...|+++ +|+..|+...+ +.+|+... ...........|+.+.|...++.+.+.. +.+...+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~-eA~~~~~~~l~---~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTE-EALASYDKLFN---GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred chhhHHHHHHHHHhCCCHH-HHHHHHHHHcc---CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 22334677889999 99999999985 23333321 1112222335689999999999999883 22334678
Q ss_pred HHHHHhhhccchHHHHHhhhhcCCCCchh-----hH-----------------HHHHHHHHhcCChhHHHHHHhhCCCC-
Q 005802 165 SLIDMYSKCRCYEEACRVFEGCTEEVNLI-----SK-----------------NAMVAACCREGEMEMALKTFWRQPEL- 221 (676)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~- 221 (676)
.+...+...|+.++|+..++++...+... .+ ...+..+-.....+.|...+......
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 89999999999999999999876533211 11 11111111122244455555432211
Q ss_pred CCeee-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc-hhHH-
Q 005802 222 NDAVS-WNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISN-PFVS- 297 (676)
Q Consensus 222 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~- 297 (676)
++... .......+...|++++|+..|++.... .| +...+..+..++.+.|++++|...|+...+...... ...+
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 12211 123345677899999999999999884 35 667888888999999999999999999988654221 1111
Q ss_pred -----------HHHHHHHHhcCChHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHH
Q 005802 298 -----------SGIVDVYCKCENMNYAESMLLLKGVR---NSFSISSMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWT 360 (676)
Q Consensus 298 -----------~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~ 360 (676)
......+.+.|++++|...+++.... +...+..+...+...|++++|++.|+++.+ | +...+.
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 12345677899999999999887653 455677788899999999999999999875 3 344566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC--------CCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHH
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVV--------TDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLIST 432 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 432 (676)
.+...+. .++.++|+.+++.+ ...... .....+..+...+...|++++|...++.+.+.. +.++..+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l-~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASL-SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 6666664 46789999988765 211100 011234455667788999999999999998875 456777888
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh---------HHHHHH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV---------TFVAIL 500 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll 500 (676)
+...|.+.|++++|...++++.+ | +...+..+...+...++.++|+..++++......++.. .+..+.
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 99999999999999999998753 3 44555556666778999999999998865433222221 123455
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
..+...|+.++|..+++. .+++...+..+...+.+.|++++|++.++++. .+.++..+..++.++...|+++
T Consensus 581 ~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 678889999999999872 13346677889999999999999999999988 4557889999999999999999
Q ss_pred HHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 579 LAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+|+..++++.+..|+++..+..++.++...|++++|.++++.+.....+
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 9999999999999999999999999999999999999999999876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-23 Score=221.85 Aligned_cols=590 Identities=11% Similarity=-0.004 Sum_probs=366.4
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHhc
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--RNVFSWNTIISACIKSHDLKQARSLFD 80 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~ 80 (676)
.||+++|...|+...+.. |-++.++..|..+|...|+.++|+..+++..+ |+...|..++..+ ++.++|..+++
T Consensus 57 ~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 489999999999999988 44589999999999999999999999999876 4333343333333 88899999999
Q ss_pred cCC--CCCc-ccHHHHHHH--------HHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHH-HHHHHccCCcHHHHHHH
Q 005802 81 SSP--HKDL-VTYNSMLCG--------YINAEGYEADALKLFIEMQSADEHIRMDEFTVTST-LNLCVKLLNVGFGRQLH 148 (676)
Q Consensus 81 ~~~--~~~~-~~~~~ll~~--------~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 148 (676)
++. .|+. .++..+... |.+. + .|.+.++ ... ....|+..+.... .+.+...++++.+...+
T Consensus 133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---e-qAl~AL~-lr~--~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQL---P-VARAQLN-DAT--FAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHhCCCChhHHHHHHHHhhccchhhhhhH---H-HHHHHHH-Hhh--hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 987 3543 344444443 4444 4 6666666 333 3344455555555 88999999999999999
Q ss_pred HHHHHhcCCCCCchhhHHHHHhhh-ccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCC----CCC
Q 005802 149 AFMVKTSNDASGFAVSSLIDMYSK-CRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPE----LND 223 (676)
Q Consensus 149 ~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~ 223 (676)
..+.+.+... ......|...|.. .++ +++..++.... +.++..+..+.+.+.+.|+.++|.+++.+++. .|.
T Consensus 206 ~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~l-k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 206 NEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGI-FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 9999985433 3336667777877 467 88888866422 35788888999999999999999999988764 233
Q ss_pred eeeHHHH------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHH--hC
Q 005802 224 AVSWNTL------------------------------ISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSAC--CG 271 (676)
Q Consensus 224 ~~~~~~l------------------------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~ 271 (676)
..+|-.+ +..+.+.+.++.+.++. .+.|.... ..++.. ..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~ 354 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVA 354 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccc
Confidence 3232221 23333444444333221 13343332 122222 23
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--Cc---h-hHHHHHHHHHhcCC---HH
Q 005802 272 LRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR--NS---F-SISSMIVGYSLQGN---ME 342 (676)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~---~-~~~~li~~~~~~~~---~~ 342 (676)
.+...++...+..+.+.. +-+....-.+.-...+.|+.++|..++...... +. . ...-++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 355556666666665542 224444444445566777788888877766551 11 1 22244555555544 22
Q ss_pred HHHHHH-------------------------hccCC---C--CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCH
Q 005802 343 EARRHF-------------------------DSLTE---K--NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDA 392 (676)
Q Consensus 343 ~a~~~~-------------------------~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 392 (676)
++..+. ..... + +...|..+..++.. ++..+|+..+.+.... .|+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCch
Confidence 222221 11111 1 33445555555554 6666677766655222 2444
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHH---HHHHHH
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNV---MIACYA 469 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~ 469 (676)
.....+...+...|++++|...++.+... +|+...+..+...+.+.|++++|...++...+.++..... +...+.
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 43333344445677777777777665443 3333444555666667777777777776665433222222 222333
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 548 (676)
..|++++|...+++..+ ..|+...+..+..++.+.|++++|...+++... ..|+ ...+..+..++...|++++|
T Consensus 588 ~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 588 IPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred hCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44777777777777766 345666666666777777777777777777663 3455 56666667777777777777
Q ss_pred HHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 549 IEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 549 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++.+++.. .+.++..+..+..++...|++++|+..++++++..|++..+....+++..+..+++.|.+.+++.-.-++
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 77777665 3445666677777777777777777777777777777777777777777777777777776666554444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-21 Score=208.18 Aligned_cols=577 Identities=9% Similarity=-0.033 Sum_probs=409.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--C-CcchHHHHHHH--------HHhcC
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--R-NVFSWNTIISA--------CIKSH 70 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~--------~~~~g 70 (676)
+.|+.++|+..+++..+.. |+-..|..++..+ ++.++|..+++++.. | +..++..+... |.+.+
T Consensus 90 ~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e 164 (987)
T PRK09782 90 HFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP 164 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH
Confidence 5789999999999999876 3444444444333 899999999999875 4 34555555554 77776
Q ss_pred ChHHHHHHhccCCCC--CcccHHHH-HHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHc-cCCcHHHHH
Q 005802 71 DLKQARSLFDSSPHK--DLVTYNSM-LCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVK-LLNVGFGRQ 146 (676)
Q Consensus 71 ~~~~A~~~~~~~~~~--~~~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~ 146 (676)
....+++ .....| +..+.... .+.|.+.++++ .|++++.++.+ .+ ..+..-...+-.++.. .++ +.+..
T Consensus 165 qAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~-~Ai~lL~~L~k--~~-pl~~~~~~~L~~ay~q~l~~-~~a~a 237 (987)
T PRK09782 165 VARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWS-QADTLYNEARQ--QN-TLSAAERRQWFDVLLAGQLD-DRLLA 237 (987)
T ss_pred HHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHH-HHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHhhCH-HHHHH
Confidence 6666666 222234 34444544 89999999999 99999999997 32 2234445666667766 366 66766
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC----CCchhhHH--------------------------
Q 005802 147 LHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE----EVNLISKN-------------------------- 196 (676)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-------------------------- 196 (676)
+++. .+..+...+..++..|.+.|+.++|.+.+.++.. .|...++-
T Consensus 238 l~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~ 313 (987)
T PRK09782 238 LQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQ 313 (987)
T ss_pred Hhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHH
Confidence 6442 3334566888999999999999999999987765 23333221
Q ss_pred ----HHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 005802 197 ----AMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGY--VQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACC 270 (676)
Q Consensus 197 ----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 270 (676)
.++..+.+.++++-+.++...- |.... ..++.. ...+...++...++.|-... +-+......+--...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 314 YVVGATLPVLLKEGQYDAAQKLLATL---PANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLM 387 (987)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhcCC---CcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 1256677778888777664422 22222 233322 23466777777777776631 224444444455567
Q ss_pred CCCChHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhcCC---hHHHHHH-------------------------HHhc
Q 005802 271 GLRNVKCAKEIHSWVLKN-G-LISNPFVSSGIVDVYCKCEN---MNYAESM-------------------------LLLK 320 (676)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~-------------------------~~~~ 320 (676)
..|+.++|.++++..... + ..++......++..|.+.+. ...+..+ +...
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 889999999999988762 1 23345556678888888766 3333222 1111
Q ss_pred CC---C--CchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCCCCHh
Q 005802 321 GV---R--NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTAL--FSGYVKAQNCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 321 ~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
.. + +...|..+...+.. ++.++|+..+.+.....+..++.+ ...+...|++++|+..|+++ ... +|+..
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka-~~~--~p~~~ 543 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKI-SLH--DMSNE 543 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHH-hcc--CCCcH
Confidence 11 1 34456666666665 889899997777654333344444 44456899999999999986 332 44445
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchHHHHHHHHHHc
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIACYAHH 471 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~ 471 (676)
.+..+...+...|+.+.|...++...+.. +.....+..+.....+.|++++|...+++.. .|+...|..+...+.+.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 56667778889999999999999998865 3333444444445556699999999999887 46777899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHH
Q 005802 472 GHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAI 549 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 549 (676)
|++++|+..+++.... .|+ ...+..+..++...|++++|...+++..+ ..|+ ...+..+..++...|++++|+
T Consensus 623 G~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 623 HNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999985 565 55677777889999999999999999974 3566 888999999999999999999
Q ss_pred HHHHhCC-CCCc-HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCCh
Q 005802 550 EFMKSIP-TEED-AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNW 611 (676)
Q Consensus 550 ~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 611 (676)
..+++.. ..|+ ..+............+++.+.+.+++....+|... +....+.++...+++
T Consensus 698 ~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 698 HYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 9999987 4554 45666777788888899999999999999999876 666667776666655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-21 Score=182.61 Aligned_cols=438 Identities=14% Similarity=0.137 Sum_probs=346.1
Q ss_pred hhHHHHHhhhccchHHHHHhhhhcCCCCchhhHH--HHHHHHHhcCChhHHHHHHhh-CCC-CCCeeeHHHHHHHHHhcC
Q 005802 163 VSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKN--AMVAACCREGEMEMALKTFWR-QPE-LNDAVSWNTLISGYVQNG 238 (676)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~-~~~-~~~~~~~~~li~~~~~~g 238 (676)
...|.+..-+.|++.+|++.....-++.+..+-+ .+-.++....+.+....--.. +.. +.-..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 5566777778888888888776555432222222 222344444455544322211 111 234567888999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCChHHHHHH
Q 005802 239 DAEEGLKLFVRMGENGVRWN-EHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVS-SGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~ 316 (676)
++++|+.+|+.|.+ ++|+ ...|..+..++...|+.+.|.+.|.+.++.+ |+.... +.+.......|+.++|...
T Consensus 131 ~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999998 4564 4678888889999999999999998888754 554433 3444555567889999988
Q ss_pred HHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 005802 317 LLLKGVRN---SFSISSMIVGYSLQGNMEEARRHFDSLTEKN---VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVT 390 (676)
Q Consensus 317 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 390 (676)
+.+....+ ...|+.|.-.+-.+|+...|+..|++...-| ...|-.|...|...+.+++|+..|.+.+ ...|
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl---~lrp 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL---NLRP 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH---hcCC
Confidence 87766533 4678999999999999999999999988643 3478888999999999999999998763 3345
Q ss_pred C-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHH
Q 005802 391 D-ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIA 466 (676)
Q Consensus 391 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 466 (676)
+ ...+..+...|-..|.++.|...+++.++.. +.=+..|+.|..++-..|++.+|...|.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 4566777777888999999999999988764 33367899999999999999999999998763 34567888999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ 544 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 544 (676)
.+...|.+++|..+|....+ +.|. ...++.|...|.+.|++++|+..+++.. .++|+ ...|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999887 5666 5678889999999999999999999887 78999 8899999999999999
Q ss_pred HHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 545 LEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 545 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
.+.|.+.+.++. ..| -......|...|..+|+..+|+..|+.++++.|+.+..|-.|+.++.-..+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999988 444 566888999999999999999999999999999999999999888766666655
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-18 Score=175.51 Aligned_cols=428 Identities=12% Similarity=0.091 Sum_probs=201.3
Q ss_pred ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCC--CchhhHHHHHhhhccchHHHHHhhhhcCC-CCch--hhHHHH
Q 005802 124 DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDAS--GFAVSSLIDMYSKCRCYEEACRVFEGCTE-EVNL--ISKNAM 198 (676)
Q Consensus 124 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~l 198 (676)
++...+.|.+-+.-.|++..+..+...+......-. ...|--+..+|-..|++++|...|.+..+ .++. ..+--+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 344444444555555555555555555444321111 11344455555555555555555543332 2222 122234
Q ss_pred HHHHHhcCChhHHHHHHhhCCC-CC-CeeeHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCC
Q 005802 199 VAACCREGEMEMALKTFWRQPE-LN-DAVSWNTLISGYVQNG----DAEEGLKLFVRMGENGVRWNEHTFASALSACCGL 272 (676)
Q Consensus 199 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 272 (676)
...+.+.|+++.+...|+.+.. .| +..+...|...|...+ ..+.|..++.+....- +-|...|..+...+. .
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~ 426 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-Q 426 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-h
Confidence 4455555555555555544332 12 2223333333333332 2233333333333311 112233333332222 2
Q ss_pred CChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC-------CCc-----h-hHHHHHHHH
Q 005802 273 RNVKCAKEIHSWVL----KNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV-------RNS-----F-SISSMIVGY 335 (676)
Q Consensus 273 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~-----~-~~~~li~~~ 335 (676)
+++..+..++..+. ..+-.+-+.+.|.+...+...|+++.|...|..... ++. . +--.+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 22222233333322 233334445555555555555555555554443221 111 0 111122333
Q ss_pred HhcCCHHHHHHHHhccCCCCc--h-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHH
Q 005802 336 SLQGNMEEARRHFDSLTEKNV--V-VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK 412 (676)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~--~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 412 (676)
-..++.+.|.+.+..+....+ + .|--+.......++..+|..++++.+......|+..++ +-..+.....+..|.
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccc
Confidence 344555556566665554221 1 22222211222345556666666554444444444332 222334444444444
Q ss_pred HHHHHHHHcC-CCCChhHHHHHHHHHHh------------cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhH
Q 005802 413 EIHAYILRMG-VQMDKKLISTLVDMYSK------------CGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEK 476 (676)
Q Consensus 413 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 476 (676)
.-+..+.+.- ..+|+...-+|.+.|.+ .+..++|.++|.++.+. |..+-|-+...++..|++.+
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchH
Confidence 4343333321 12344444444444332 23456677777666532 44455556666777777777
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 477 AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|..+|.+..+... -+..+|..+..+|...|++..|+++|+...+++.-.-+..+...|.+++.+.|++.+|.+.+..+.
T Consensus 665 A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 665 ARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777777776532 234456667777777777777777777776665544557777777777777777777777766555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=175.55 Aligned_cols=424 Identities=13% Similarity=0.082 Sum_probs=344.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHH--HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCC
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPELNDAVSWN--TLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGL 272 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 272 (676)
...|..-..+.|++++|++.-.......+..+-+ .+-..+.+..+.+.....-....+. .+--..+|..+.+.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 5566777788999999998876665322222222 2223455556666554443333332 223457899999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHh
Q 005802 273 RNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF---SISSMIVGYSLQGNMEEARRHFD 349 (676)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~ 349 (676)
|+++.|...++.+++.. +.....|..+..++...|+.+.|...|....+-++. ..+.+...+-..|++.+|...+.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999875 235678889999999999999999999887775443 23345556667899999999888
Q ss_pred ccCC--CC-chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCC
Q 005802 350 SLTE--KN-VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQAALHPGKEIHAYILRMGVQM 425 (676)
Q Consensus 350 ~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 425 (676)
+..+ |. .+.|+.|...+...|+...|+..|++.+ .+.|+ ...|..|-..+...+.++.|...+.+..... +.
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv---kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV---KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhh---cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 7765 33 4689999999999999999999999863 33444 3467888888999999999999998877654 45
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RD-LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILS 501 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 501 (676)
....+..+...|...|.++.|+..|++... |+ ...|+.|..++...|++.+|...|.+... +.|+ ....+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 567788888899999999999999998873 43 45899999999999999999999999988 4555 567888999
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 578 (676)
.+...|.+++|..+|.... .+.|. ...++.|...|-++|++++|+.-++++. +.| -...+..+++.|...|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999887 66788 7789999999999999999999999988 555 5668999999999999999
Q ss_pred HHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCccc
Q 005802 579 LAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRF 629 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 629 (676)
.|++.+.+++..+|.-+..+..|+.+|...|+..+|+.-++...+..+..+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 999999999999999999999999999999999999999999998776544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-18 Score=179.30 Aligned_cols=420 Identities=15% Similarity=0.057 Sum_probs=285.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-HhHHHHHHHHHhCC
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWN-EHTFASALSACCGL 272 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 272 (676)
+......+.+.|++++|+..|++... .|+...|..+..+|.+.|++++|++.++...+. .|+ ...+..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 33455667777888888888866443 566667777777788888888888888887763 343 45666677777888
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccC
Q 005802 273 RNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT 352 (676)
Q Consensus 273 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 352 (676)
|++++|..-+..+...+...+.. ...++..+........+...+.... ++..++..+.. +...........-+....
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 88888877776555443211111 1122221111111222333332221 12222222222 221111111111111111
Q ss_pred CCCc---hhHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCC
Q 005802 353 EKNV---VVWTALFSG---YVKAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQAALHPGKEIHAYILRMGVQM 425 (676)
Q Consensus 353 ~~~~---~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 425 (676)
+.+. ..+..+... ....+++++|+..|++.+......|+ ...+..+...+...|++++|...++...+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 1111 111111111 12347899999999998544334444 4556667777788999999999999988764 34
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILS 501 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 501 (676)
....+..+...+...|++++|...|+.... .+...|..+...+...|++++|+..|++.++. .|+ ...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 466788889999999999999999998753 35678999999999999999999999999985 454 566777888
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc-HHH-------HHHHHHHH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEED-AVI-------LGSFLNVC 571 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~-------~~~l~~~~ 571 (676)
++.+.|++++|...++..... .|+ ...+..+..++...|++++|++.|++.. ..|+ ... ++..+..+
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 899999999999999998753 455 7889999999999999999999999976 3332 111 11122233
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
...|++++|...++++++++|++...+..|+.++.+.|++++|++.+++..+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 446999999999999999999999899999999999999999999999987653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-16 Score=158.72 Aligned_cols=607 Identities=12% Similarity=0.046 Sum_probs=340.0
Q ss_pred HHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC------CCcc-----hHHHHHHHHHhc------
Q 005802 7 KEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE------RNVF-----SWNTIISACIKS------ 69 (676)
Q Consensus 7 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~-----~~~~ll~~~~~~------ 69 (676)
.++-+++..+...+- -..+|..+...|.+.|..++...+++.-.. .|+. .++.+...+...
T Consensus 25 PD~~ev~~IL~~e~a--~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~ 102 (1018)
T KOG2002|consen 25 PDATEVLSILKAEQA--PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKK 102 (1018)
T ss_pred CChHHHHHHHHHhcC--chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666652 356899999999999999999999988762 1221 222222222221
Q ss_pred -----CChHHHHHHhccCCC-----CCcccHHHHHHHHHhcCCC--hhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHc
Q 005802 70 -----HDLKQARSLFDSSPH-----KDLVTYNSMLCGYINAEGY--EADALKLFIEMQSADEHIRMDEFTVTSTLNLCVK 137 (676)
Q Consensus 70 -----g~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~--~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 137 (676)
.-+..|..+|+.... +....+.. ..|...+.. + .|...|.-..+. -+++...+.-=......
T Consensus 103 ~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~--~~~l~~~~~~~~-~A~a~F~~Vl~~---sp~Nil~LlGkA~i~yn 176 (1018)
T KOG2002|consen 103 KDEKDELFDKATLLFDLADKIDMYEDSHLLVQR--GFLLLEGDKSMD-DADAQFHFVLKQ---SPDNILALLGKARIAYN 176 (1018)
T ss_pred cchhHHHHHHHHHHhhHHHHhhccCcchhhhhh--hhhhhcCCccHH-HHHHHHHHHHhh---CCcchHHHHHHHHHHhc
Confidence 113345555544322 22111111 122223333 5 777777777651 22233333222233346
Q ss_pred cCCcHHHHHHHHHHHHh--cCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC-CCchhhHHHHHHHHH----hcCChhH
Q 005802 138 LLNVGFGRQLHAFMVKT--SNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE-EVNLISKNAMVAACC----REGEMEM 210 (676)
Q Consensus 138 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~----~~g~~~~ 210 (676)
.+++..|..+|...... ...||.. -.+-.++.+.|+.+.|+..|+...+ .|+.+.....+..+. ....+..
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 67888888888886554 2333332 3344666778888888888776655 332221111111111 1223444
Q ss_pred HHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CcHhHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005802 211 ALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVR--WNEHTFASALSACCGLRNVKCAKEIHSWVL 286 (676)
Q Consensus 211 A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (676)
+..++...-. ..|++..+.|...|.-.|+++.++.+...+...... .-...|-.+.+++-..|++++|...|.+..
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 5555433221 346666777777777777777777777777653311 123446667777777777777777777766
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CchhHHHHHHHHHhcC----CHHHHHHHHhccCCCC---c
Q 005802 287 KNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR---NSFSISSMIVGYSLQG----NMEEARRHFDSLTEKN---V 356 (676)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~---~ 356 (676)
+.....-...+-.|.++|.+.|+.+.+...|+..... +..+...|...|...+ ..+.|..++.+..++. .
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 6542222333445677777777777777777666542 2233334444444332 3455555555544432 2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc---CCCCCh---
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFV---TKEGVVTDALILVILLGACALQAALHPGKEIHAYILRM---GVQMDK--- 427 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~--- 427 (676)
..|-.+...+-.. +...++..|.... ...+..+.....+.+.......|+++.|...+...... ...++.
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~ 493 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKS 493 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccccc
Confidence 2333333333222 2222233333221 22233344444555555555555555555555444332 011111
Q ss_pred ---hHHHHHHHHHHhcCCH----------------------------------HHHHHHHhhcC---CCCcchHHHHHHH
Q 005802 428 ---KLISTLVDMYSKCGNM----------------------------------TYAEIIFQNFI---ERDLVLYNVMIAC 467 (676)
Q Consensus 428 ---~~~~~l~~~~~~~g~~----------------------------------~~A~~~~~~~~---~~~~~~~~~l~~~ 467 (676)
.+--.+..++-..+++ .+|...+..+. ..++..+..+...
T Consensus 494 ~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 494 TNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred chhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 1112223333333344 44444444433 2344455555556
Q ss_pred HHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHhhc------------cCcHHHHHHHHHHchhhcCCCCCHHHHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKG-IKPDAVTFVAILSAFRH------------CGSVEMGEKYFNSMTADYKISPETDHYAC 534 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 534 (676)
+.....+..|.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.+.... -+.|...-+-
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccc
Confidence 666666666666555544421 12455555555554432 24567788888877642 2334677777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc--cCCCCccHHHHHHHHHhcCC
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL--EGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~ 610 (676)
+.-.++..|++.+|..+|.... ......+|..+..+|...|+|-.|+++|+...+. ..+++.+...|+.++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 8888889999999999998877 3346678889999999999999999999988877 34567788899999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 005802 611 WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 611 ~~~A~~~~~~~~~~~~ 626 (676)
+.+|.+.+.......+
T Consensus 732 ~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999998887776555
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-19 Score=177.44 Aligned_cols=295 Identities=14% Similarity=0.127 Sum_probs=211.2
Q ss_pred hcCCHHHHHHHHhccCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC---HhHHHHHHHHHHhhcChhH
Q 005802 337 LQGNMEEARRHFDSLTEK---NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD---ALILVILLGACALQAALHP 410 (676)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~ 410 (676)
..|++++|...|.++.+. +..++..+...+...|++++|+.+++.+ ...+..++ ...+..+...+...|+++.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNL-LSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 344555555666655432 2335566666666677777777777666 22221111 2345556666666777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC--------cchHHHHHHHHHHcCChhHHHHHHH
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD--------LVLYNVMIACYAHHGHEEKAILLFE 482 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~ 482 (676)
|..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 777776666542 3455667777777777777777777777765321 1134567777888999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC
Q 005802 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE 559 (676)
Q Consensus 483 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 559 (676)
++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ...+..++.+|.+.|++++|...++++. ..|
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 998753 223557777888999999999999999999754 344 4668889999999999999999999987 567
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh---cCChhHHHHHHHHHHhCCCcccCceeEEE
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA---EGNWAEMGRIRKQMRGMKGNRFAGCSWVY 636 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 636 (676)
+...+..++..+...|++++|..+++++.+..|++.. +..+...+.. .|+.++|...+++|.+++++.+|.+....
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~ 359 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRN 359 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCC
Confidence 7777788888999999999999999999999998764 4444444443 56999999999999999988888755443
Q ss_pred Ec
Q 005802 637 VE 638 (676)
Q Consensus 637 ~~ 638 (676)
++
T Consensus 360 cg 361 (389)
T PRK11788 360 CG 361 (389)
T ss_pred CC
Confidence 43
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-17 Score=160.14 Aligned_cols=569 Identities=14% Similarity=0.068 Sum_probs=358.6
Q ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005802 11 ICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE----RNVFSWNTIISACIKSHDLKQARSLFDSSPHKD 86 (676)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 86 (676)
.++..+...|+.|+..||.++|.-||..|+++.|- +|..|.- .+...++.++.++.++++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 9988875 35578999999999999988765 689
Q ss_pred cccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHH-HhcCCCCCchhhH
Q 005802 87 LVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMV-KTSNDASGFAVSS 165 (676)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 165 (676)
..||+.|+.+|.+.|+.. . |+...+ ....+...+...|....-..++..+. ..+..|| -..
T Consensus 83 aDtyt~Ll~ayr~hGDli-~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd---a~n 144 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLI-L----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD---AEN 144 (1088)
T ss_pred hhHHHHHHHHHHhccchH-H----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh---HHH
Confidence 999999999999999887 3 433332 12223334444554444433333221 1122233 345
Q ss_pred HHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhc-CChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHH
Q 005802 166 LIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCRE-GEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGL 244 (676)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 244 (676)
++....-.|-++.+++++..++..........+++-+... ..+++-..........|+..+|.+++.....+|+.+.|.
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 6666777888888888888777621111122234443332 345555555555654689999999999999999999999
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH--------
Q 005802 245 KLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM-------- 316 (676)
Q Consensus 245 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-------- 316 (676)
.++.+|++.|++.+.+.|..|+-+ .++...++.++.-|.+.|+.|+..|+...+-.+..+|....+.+.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 999999999999999999999877 889999999999999999999999998877766664443222111
Q ss_pred ----------------HHhcC---------CC------CchhHHHHHHHHHhcCCHHHHHHHHhccCCC-------Cchh
Q 005802 317 ----------------LLLKG---------VR------NSFSISSMIVGYSLQGNMEEARRHFDSLTEK-------NVVV 358 (676)
Q Consensus 317 ----------------~~~~~---------~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~ 358 (676)
+++-. .+ -+.+.-+++.-...+|+-++.+.+-..+..| ++..
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 00000 00 0011122222233356666666666655543 2334
Q ss_pred HHHHHHHHHHc----------------------CChHHHHHHHHHHHHcCCCCCCH------------------------
Q 005802 359 WTALFSGYVKA----------------------QNCEALFDLLSEFVTKEGVVTDA------------------------ 392 (676)
Q Consensus 359 ~~~li~~~~~~----------------------~~~~~a~~~~~~m~~~~~~~p~~------------------------ 392 (676)
|..++.-|.+. ....+..+..... .||.
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l------rkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL------RKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh------CcchHHHHHhhhhHHHHhcccccchhhh
Confidence 44444433332 1122222222221 2221
Q ss_pred ----hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC------cchHH
Q 005802 393 ----LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD------LVLYN 462 (676)
Q Consensus 393 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~ 462 (676)
..-..++..|++.-+..+++..-+.....-++ ..|..||+.++...+.+.|..+.+++..++ ..-+.
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~ 532 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMT 532 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHH
Confidence 11233444455555555554433333332222 567888999999999999999998887653 44577
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC-CCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGI-KPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 540 (676)
.+.+.+.+.+....+..++.++.+.-. .|+ ..++-.+++.....|+.+...++++-+..- |+.-+ .-++....
T Consensus 533 ~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~et----gPl~~vhL 607 (1088)
T KOG4318|consen 533 SLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSET----GPLWMVHL 607 (1088)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhhc----ccceEEEe
Confidence 888888999999999999999887322 222 445556667777778888777777766433 44332 23445556
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH---------------------HhCCHhHHHHHHHHH--HcccCCC-
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR---------------------LNRNAELAGEAEEKL--LRLEGNN- 594 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~---------------------~~~~~~~a~~~~~~~--~~~~p~~- 594 (676)
+.++...|.+..+... .+|.+.....+...+. +.|++.+|..+.+-- .-..|.|
T Consensus 608 rkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr 687 (1088)
T KOG4318|consen 608 RKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDR 687 (1088)
T ss_pred eccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCcc
Confidence 6677666666654433 3444443333333332 223322222222210 0001111
Q ss_pred -------------------CccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 595 -------------------KARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 595 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
......|...|.+.|+++.|..+|.++.
T Consensus 688 ~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 688 DTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred ccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 1234567889999999999999999987
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-17 Score=174.18 Aligned_cols=401 Identities=8% Similarity=-0.022 Sum_probs=241.8
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHH
Q 005802 191 NLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALS 267 (676)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 267 (676)
++....-.+......|+.++|++++.+... +.+...+..+...+...|++++|..+|++..+. .| +......+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 444445566677778888888888877652 223334777777788888888888888887763 34 3445556666
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhcCCHHHH
Q 005802 268 ACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQGNMEEA 344 (676)
Q Consensus 268 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a 344 (676)
.+...|++++|...++.+.+.. +.+.. +..+..++...|+.+.|...+++... | +...+..+...+...+..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 7777888888888888877763 23444 66677777777777777776666554 2 223344455555556666666
Q ss_pred HHHHhccCCCCch--------hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcCh---hHHHH
Q 005802 345 RRHFDSLTEKNVV--------VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAAL---HPGKE 413 (676)
Q Consensus 345 ~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~ 413 (676)
++.++.... ++. ....++......+. ...+.+ +.|..
T Consensus 170 l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~-------------------------------~~~~r~~~ad~Al~ 217 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTR-------------------------------SEKERYAIADRALA 217 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhccccc-------------------------------ChhHHHHHHHHHHH
Confidence 666665554 111 00011111100000 001111 33444
Q ss_pred HHHHHHHc-CCCCChh-HH-HH---HHHHHHhcCCHHHHHHHHhhcCCCC--cc--hHHHHHHHHHHcCChhHHHHHHHH
Q 005802 414 IHAYILRM-GVQMDKK-LI-ST---LVDMYSKCGNMTYAEIIFQNFIERD--LV--LYNVMIACYAHHGHEEKAILLFEE 483 (676)
Q Consensus 414 ~~~~~~~~-~~~~~~~-~~-~~---l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~A~~~~~~ 483 (676)
.++.+.+. ...|+.. .+ .. .+..+...|++++|...|+.+.+.+ .. .-..+...|...|++++|+..|++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444432 1111111 10 00 0223345566777777777665321 11 112245567777777777777777
Q ss_pred HHHCCCCC---CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC----------CCCC---HHHHHHHHHHHhhcCCHHH
Q 005802 484 MLEKGIKP---DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK----------ISPE---TDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 484 m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~ 547 (676)
+.+..... .......+..++...|++++|..+++.+..... -.|+ ...+..++..+...|++++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 66532111 123344555566777777777777777754310 0122 2344566777788888888
Q ss_pred HHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 548 AIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 548 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
|++.++++. .+.++..+..+...+...|+.++|+..++++++.+|+++..+..++.++...|++++|..+++.+.+..
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 888888876 455667777788888888888888888888888888888888888888888888888888888887655
Q ss_pred Cc
Q 005802 626 GN 627 (676)
Q Consensus 626 ~~ 627 (676)
++
T Consensus 458 Pd 459 (765)
T PRK10049 458 PQ 459 (765)
T ss_pred CC
Confidence 43
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-16 Score=167.31 Aligned_cols=416 Identities=10% Similarity=0.014 Sum_probs=266.5
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCC-CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCCh
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTE-EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDA 240 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 240 (676)
......+.+.|++++|+..|++... .|+...|..+..+|.+.|++++|++.+..... +.+...|..+..++...|++
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 3444555666666666666665443 45556666666667777777777776655442 22445666677777777777
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 005802 241 EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLK 320 (676)
Q Consensus 241 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 320 (676)
++|+.-|......+- .+......++..+.. ..+........+.. +++...+..+.. |...........-+...
T Consensus 211 ~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 211 ADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 777777765544321 111111111111111 11222222222221 111112222211 11111111111111111
Q ss_pred CCCCc---hhHHHHHHH---HHhcCCHHHHHHHHhccCCC------CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005802 321 GVRNS---FSISSMIVG---YSLQGNMEEARRHFDSLTEK------NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGV 388 (676)
Q Consensus 321 ~~~~~---~~~~~li~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 388 (676)
...+. ..+..+... ....+++++|.+.|+...+. ....|+.+...+...|++++|+..|++.+..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--- 360 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--- 360 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 11111 111111111 12346788888888877642 2346778888888999999999999987332
Q ss_pred CCC-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHH
Q 005802 389 VTD-ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVM 464 (676)
Q Consensus 389 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 464 (676)
.|+ ...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++... | +...+..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 343 5577777888889999999999999888764 55678888999999999999999999998763 3 45677788
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH-H-------HHHHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET-D-------HYACM 535 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l 535 (676)
...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|++... +.|+. . .++..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHH
Confidence 89999999999999999999874 34 467888888999999999999999999864 33431 1 12222
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 536 IDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
...+...|++++|.+++++.. ..| +...+..++.++...|++++|+..++++.++.+...
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 233445699999999999876 334 556788899999999999999999999999877643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-16 Score=163.41 Aligned_cols=441 Identities=10% Similarity=0.010 Sum_probs=259.2
Q ss_pred HccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHH--HHHHHhcCChhHHHH
Q 005802 136 VKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAM--VAACCREGEMEMALK 213 (676)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~ 213 (676)
.+.|+++.|...+++..+.........+ .++..+...|+.++|+..+++...+.+...+..+ ...+...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555555554444111111122 4444444445555555555544421122222222 334455566666665
Q ss_pred HHhhCCC-C-CCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005802 214 TFWRQPE-L-NDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 214 ~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
+++++.. . .+...+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|.+.++++.+.. +
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 5555443 2 2334444555566666666666666666655 23444444333333333444444666666666654 3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 005802 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGVR-NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQ 370 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 370 (676)
.+...+..++.++.+.|-...|.++....+.- +...+..+ ..+.|.+..+....++..- -. +--
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~~~----~~---r~~ 265 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTRSE----TE---RFD 265 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccccc----hh---hHH
Confidence 34555566666666666666666555443310 00000000 0011111111111110000 00 001
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhH-----HHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 005802 371 NCEALFDLLSEFVTKEGVVTDALI-----LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTY 445 (676)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (676)
-.+.|+.-++.++...+..|.... ..-.+.++...++..++...++.+...+.+....+...+.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 234555556665444443343222 223345667888888888889888888877777788889999999999999
Q ss_pred HHHHHhhcCCC---------CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-----------CCC--H-hHHHHHHHH
Q 005802 446 AEIIFQNFIER---------DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-----------KPD--A-VTFVAILSA 502 (676)
Q Consensus 446 A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~--~-~~~~~ll~~ 502 (676)
|..+|..+..+ +......|.-++...+++++|..+++++.+.-. .|| - ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 99999887532 222346788889999999999999999987311 122 1 223445667
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 580 (676)
+...|+..+|++.++.+... -+-|......+.+.+...|.+.+|++.++... ..| +..+....+.++...+++.+|
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 88899999999999999643 23348888899999999999999999997766 344 556667777888888999999
Q ss_pred HHHHHHHHcccCCCCcc
Q 005802 581 GEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~ 597 (676)
..+.+.+.+..|+++..
T Consensus 504 ~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 504 ELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHhhCCCchhH
Confidence 99999999999998743
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=167.44 Aligned_cols=290 Identities=13% Similarity=0.154 Sum_probs=145.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcC
Q 005802 232 SGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISN---PFVSSGIVDVYCKCE 308 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 308 (676)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456677777777777777642 12334566666677777777777777777666432221 133455555555666
Q ss_pred ChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005802 309 NMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGV 388 (676)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 388 (676)
+++.|...|.++...+ ..+..+++.++..+.+.|++++|.+.++.+......
T Consensus 122 ~~~~A~~~~~~~l~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 122 LLDRAEELFLQLVDEG----------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred CHHHHHHHHHHHHcCC----------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 6665554444333210 012233444444444444444444444444211111
Q ss_pred CCC---HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--cchH
Q 005802 389 VTD---ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RD--LVLY 461 (676)
Q Consensus 389 ~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~ 461 (676)
.+. ...+..+...+...+++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.. |+ ..++
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 111 0112233334444455555555554444432 22233444455555555555555555555442 21 1234
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh
Q 005802 462 NVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR 541 (676)
Q Consensus 462 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 541 (676)
+.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhh
Confidence 55555566666666666666665553 344444455555566666666666666655432 4555555555554443
Q ss_pred ---cCCHHHHHHHHHhCC
Q 005802 542 ---ANQLEKAIEFMKSIP 556 (676)
Q Consensus 542 ---~g~~~~A~~~~~~~~ 556 (676)
.|+.+++..+++++.
T Consensus 328 ~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 328 EAEEGRAKESLLLLRDLV 345 (389)
T ss_pred ccCCccchhHHHHHHHHH
Confidence 335555555555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-16 Score=167.87 Aligned_cols=402 Identities=8% Similarity=-0.057 Sum_probs=235.1
Q ss_pred hhccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHH
Q 005802 171 SKCRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKL 246 (676)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 246 (676)
...|+.++|++++..... +.....+..+...+...|++++|..+|++... +.+...+..+...+...|++++|+..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 334444444444443332 22233455555666666666666666655321 33444556666677777777777777
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch
Q 005802 247 FVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF 326 (676)
Q Consensus 247 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 326 (676)
+++..+. .|+...+..+..++...|+.+.|...++.+.+... .+...+..+..++...+..+.|...++.... ++.
T Consensus 106 l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 106 AKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 7777664 23322255666666777777777777777777642 2444455566667777777777777765554 211
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCCh---HHHHHHHHHHHHcCCCCCCHh-HHH----HH
Q 005802 327 SISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNC---EALFDLLSEFVTKEGVVTDAL-ILV----IL 398 (676)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~~p~~~-~~~----~l 398 (676)
....+ ..+.+........ .......+++ ++|+..++.++......|+.. .+. ..
T Consensus 182 ~~~~l--------~~~~~~~~~r~~~----------~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 182 EKRDL--------EADAAAELVRLSF----------MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHH--------HHHHHHHHHHhhc----------ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 00000 0000001110000 0001111122 445555555432212222211 110 01
Q ss_pred HHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------cchHHHHHHHHHHc
Q 005802 399 LGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD-------LVLYNVMIACYAHH 471 (676)
Q Consensus 399 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~ 471 (676)
+..+...++.++|...++.+.+.+.+........+..+|...|++++|...|+.+...+ ......+..++...
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 22334445666666666665555421111112224556777777777777777654221 12344555667788
Q ss_pred CChhHHHHHHHHHHHCC-----------CCCCH---hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHH
Q 005802 472 GHEEKAILLFEEMLEKG-----------IKPDA---VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMI 536 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 536 (676)
|++++|.++++++.... -.|+. ..+..+...+...|++++|+..++++... .|+ ...+..++
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA 400 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYA 400 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 88888888888877642 12332 23455667788899999999999999753 454 78888999
Q ss_pred HHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 537 DLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
..+...|++++|++.++++. ..| +...+...+..+...|++++|+.+++++++..|+++.+
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999988 445 56677777778899999999999999999999998754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-16 Score=166.10 Aligned_cols=326 Identities=10% Similarity=0.021 Sum_probs=178.6
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVY 304 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (676)
.....++..+.+.|++++|..+++........+ ...+..++.++...|+++.|...++.+.+.. +.+...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 334556667778888888888888877744322 3344444556666888888888888887764 23455566666677
Q ss_pred HhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhccCC--CCc-hhHHHHHHHHHHcCChHHHHHH
Q 005802 305 CKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQGNMEEARRHFDSLTE--KNV-VVWTALFSGYVKAQNCEALFDL 378 (676)
Q Consensus 305 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~ 378 (676)
...|+++.|...+++... | +...+..+...+...|+.++|...++.+.. |+. ..+..+ ..+...|++++|+..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 777777777755554433 1 223344444444444555554454443321 211 112111 224444555555555
Q ss_pred HHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 005802 379 LSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--- 455 (676)
Q Consensus 379 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 455 (676)
++.+ .+....++......+...+.+.|++++|...+++...
T Consensus 200 ~~~~------------------------------------l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 200 ARAL------------------------------------LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHH------------------------------------HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 5444 3332122222223334445555555555555554431
Q ss_pred CCcchHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-H
Q 005802 456 RDLVLYNVMIACYAHHGHEEK----AILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-T 529 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 529 (676)
.+...+..+...+...|++++ |...|++..+. .|+ ...+..+...+...|++++|...+++.... .|+ .
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~ 318 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH
Confidence 133445555566666666554 56666666653 333 445556666666666666666666666532 344 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHH-HHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVI-LGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
..+..+..++.+.|++++|+..++++. ..|+... +..+..++...|++++|...++++.+..|++
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 455556666666666666666666655 3343322 2233445666666666666666666666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-16 Score=169.12 Aligned_cols=319 Identities=11% Similarity=0.046 Sum_probs=235.1
Q ss_pred HHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHHHcCChHH
Q 005802 301 VDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWTALFSGYVKAQNCEA 374 (676)
Q Consensus 301 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~ 374 (676)
+..+.+.|+++.|..++..... .+...+..++.+....|++++|...++++.. | +...+..+...+...|++++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444443322 1223333444444455666666677776654 2 34567777778888888888
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005802 375 LFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI 454 (676)
Q Consensus 375 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 454 (676)
|+..+++.+.. .+.+...+..+...+...|+.++|...+..+...... +...+..+ ..+.+.|++++|...++.+.
T Consensus 129 Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 129 VADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 88888876332 2334556667777788888888888888777665432 23333333 34788999999999999876
Q ss_pred CC----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH----HHHHHHHchhhcCCC
Q 005802 455 ER----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM----GEKYFNSMTADYKIS 526 (676)
Q Consensus 455 ~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~ 526 (676)
+. +...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++ |...+++... ..
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~ 280 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FN 280 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hC
Confidence 43 23344555678889999999999999999853 2346677778889999999986 8999999874 45
Q ss_pred CC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 527 PE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 527 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
|+ ...+..+...+.+.|++++|+..+++.. .+.++..+..+..++...|++++|+..++++.+..|+++..+..++.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 66 7889999999999999999999999987 44466778888889999999999999999999999998877777899
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCc
Q 005802 604 VYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
++...|++++|...++...+..++
T Consensus 361 al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999999877654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-13 Score=130.03 Aligned_cols=485 Identities=15% Similarity=0.094 Sum_probs=378.1
Q ss_pred HccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCChhHHHH
Q 005802 136 VKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGEMEMALK 213 (676)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 213 (676)
....+.+.|.-++....+. -.+-.-|-.+|.+..-++.|.+++++..+ +-+..+|.+-...--..|+++...+
T Consensus 387 VelE~~~darilL~rAvec-----cp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVEC-----CPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3444555576677666665 12223455566677777888888876665 4466677666666667788877777
Q ss_pred HHhhCCC-------CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhCCCChHHHHHHHHH
Q 005802 214 TFWRQPE-------LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWN--EHTFASALSACCGLRNVKCAKEIHSW 284 (676)
Q Consensus 214 ~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (676)
++++-.. ..+...|-.=...|-..|..-.+..+....+..|+.-. ..|+..-...|.+.+.++.|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 7654221 22444455555667777888888888888888777543 35788888899999999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhccCCC---Cchh
Q 005802 285 VLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQGNMEEARRHFDSLTEK---NVVV 358 (676)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~ 358 (676)
.++.- +.+..+|......--..|..+.-..+|++... | ....|......+-..|++..|..++...-+. +...
T Consensus 542 alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 542 ALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 88763 44666777777777778888888888887765 3 4456777777888899999999999887653 4457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYS 438 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (676)
|-.-+.....+.+++.|..+|.+. ....|+...|.--+..--..+..++|..+++...+. ++.-...|..+.+.+-
T Consensus 621 wlaavKle~en~e~eraR~llaka---r~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKA---RSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHH---hccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 778888888999999999999976 346778888877777777788999999999888775 3555678888899999
Q ss_pred hcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 005802 439 KCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKY 515 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 515 (676)
+.++.+.|...|..-.+ ..+..|..|...--+.|..-.|..++++..-.+ +-+...|...|+.-.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999987664 356688888888889999999999999988765 33678899999999999999999999
Q ss_pred HHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 516 FNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 516 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
..+..++ .+.+-..|..-|.+..+.++-..+.+.+++. ..|+.++..+...+....++++|...|+++.+.+|++.
T Consensus 776 makALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 9988874 3444777888888888888888888888887 46777788888899999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEE
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYV 637 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 637 (676)
.+|..+-..+...|.-++-.+++.+.....+. -|..|+.+
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~--hG~~W~av 891 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPT--HGELWQAV 891 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCcHHHHH
Confidence 99999999999999999999999988776553 34445533
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-13 Score=134.99 Aligned_cols=608 Identities=14% Similarity=0.092 Sum_probs=338.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccC---CCCCcchHHHHHHHHHhcCChHHHHHHh
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEM---PERNVFSWNTIISACIKSHDLKQARSLF 79 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 79 (676)
.|++++|.+++..+++.. +-+...|..|...|-..|+.+++...+-.. ...|...|..+-......|+++.|+-+|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 389999999999999888 667889999999999999999888776443 2356688888888889999999999999
Q ss_pred ccCCCCCcccHHH---HHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhH----HHHHHHHHccCCcHHHHHHHHHHH
Q 005802 80 DSSPHKDLVTYNS---MLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTV----TSTLNLCVKLLNVGFGRQLHAFMV 152 (676)
Q Consensus 80 ~~~~~~~~~~~~~---ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~ 152 (676)
.+..+.++.-|.. -...|-+.|+.. .|++.|.++.+ ...+.|..-+ -.+++.+...++.+.|.+.++...
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~-~Am~~f~~l~~--~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLK-RAMETFLQLLQ--LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHH-HHHHHHHHHHh--hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8877533333333 344677789999 99999999986 2221122222 334555666666688888887776
Q ss_pred HhcC-CCCCchhhHHHHHhhhccchHHHHHhhhhcCC---C----------------------CchhhHH----HHHHHH
Q 005802 153 KTSN-DASGFAVSSLIDMYSKCRCYEEACRVFEGCTE---E----------------------VNLISKN----AMVAAC 202 (676)
Q Consensus 153 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~----------------------~~~~~~~----~l~~~~ 202 (676)
..+. .-+...++.++..|.+...++.|......... . ++..+|. .+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 6322 23334788888888888888888776543222 0 1111111 011111
Q ss_pred --HhcCChhHHHHHHhhCCC---CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHH
Q 005802 203 --CREGEMEMALKTFWRQPE---LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKC 277 (676)
Q Consensus 203 --~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 277 (676)
.+.+...+++.-|..... .-++..|.-+..++...|++.+|+.+|..+.....--+...|..+..++...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 123334444333322211 123445666667777777777777777777665444455566777777777777777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch------------hHHHHHHHHHhcCCHHHHH
Q 005802 278 AKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF------------SISSMIVGYSLQGNMEEAR 345 (676)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~ 345 (676)
|.+.|+.++... +.+...-..|...+-+.|+.++|.+.+..+..||.. ........+...|+.++=+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 777777776653 234445555666677777777777777766555421 1122333455556555533
Q ss_pred HHHhccCCC--------------------------CchhHHHHHHHHHHcCChHHHHHHHHHH-----HHcCCCCCCH--
Q 005802 346 RHFDSLTEK--------------------------NVVVWTALFSGYVKAQNCEALFDLLSEF-----VTKEGVVTDA-- 392 (676)
Q Consensus 346 ~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~~~~~p~~-- 392 (676)
.+...|..+ +.......+.+-.+.++.....+-...- ....+..-+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 333222210 0011111122222222211111000000 0111111111
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCC--CCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----C---cc
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGV--QMDK---KLISTLVDMYSKCGNMTYAEIIFQNFIER-----D---LV 459 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~ 459 (676)
..+.-++.++++.++.++|..+...+..... .++. ..-...+.+.+..+++..|...+..+... + ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1234445556666666666666655554321 1111 12233344455566666666666655422 1 22
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMI 536 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 536 (676)
.||...+.+.+.++-.--..++..... ..|+. ........-....+.+..|+..+-+... ..|+ +.+--++.
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHH
Confidence 455444444444432222222222221 12221 1111111223445777788877766653 3466 33322333
Q ss_pred HHHhh--c--------CCHHHHHHHHHhCC--CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc------
Q 005802 537 DLYGR--A--------NQLEKAIEFMKSIP--TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA------ 596 (676)
Q Consensus 537 ~~~~~--~--------g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------ 596 (676)
.++.. . -..-+++.++.+.. ..+ ...++-.++++|...|-...|..+|+++++..|.+..
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~ 861 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDN 861 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCc
Confidence 33321 1 12345555655444 223 5567778888999999999999999999888654311
Q ss_pred ------cHHHHHHHHHhcCChhHHHHHHHH
Q 005802 597 ------RYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 597 ------~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+-..|.-+|...|+..-|.+++++
T Consensus 862 ~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 862 YDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 234566788899999988888764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-13 Score=144.72 Aligned_cols=445 Identities=9% Similarity=-0.011 Sum_probs=279.9
Q ss_pred HHhcCCChhHHHHHHHHhHhccCCCCCChh-hHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCc-hhhHH--HHHhhh
Q 005802 97 YINAEGYEADALKLFIEMQSADEHIRMDEF-TVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGF-AVSSL--IDMYSK 172 (676)
Q Consensus 97 ~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~ 172 (676)
..+.|+.. .|+..|++..+ ..|+.. ....++..+...|+.+.|..+++... .|+.. .+..+ ...+..
T Consensus 44 ~~r~Gd~~-~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 44 RARAGDTA-PVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHhCCCHH-HHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence 34677777 77777777765 445431 22266666677777777777777766 22222 22222 446667
Q ss_pred ccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCChhHHHHHHHH
Q 005802 173 CRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGDAEEGLKLFVR 249 (676)
Q Consensus 173 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 249 (676)
.|++++|+++++++.. +.++..+..++..+...++.++|++.++++.. .|+...+-.++..+...++..+|+..+++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 7777777777777665 33456666777888888999999888888764 44444443333333345666669999999
Q ss_pred HHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---
Q 005802 250 MGENGVRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNS--- 325 (676)
Q Consensus 250 m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 325 (676)
+.+.. | +...+..+..++.+.|-...|.++...- |+.++-...... ..+.|.+..+....++.
T Consensus 195 ll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 195 AVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccccch
Confidence 98853 5 4566677888888888888888766542 222211111100 01111111111111100
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhc----cCC-CCc-----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHH
Q 005802 326 FSISSMIVGYSLQGNMEEARRHFDS----LTE-KNV-----VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALIL 395 (676)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~----~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 395 (676)
..|. -.+.|..-++. ... |.. ...--.+-++...|++.++++.|+.+ ...+.+....+-
T Consensus 262 ~r~~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l-~~~~~~~P~y~~ 330 (822)
T PRK14574 262 ERFD----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM-EAEGYKMPDYAR 330 (822)
T ss_pred hhHH----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhcCCCCCHHHH
Confidence 0000 01112222222 221 211 11123445667778888888888887 666665555577
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHcC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C------------
Q 005802 396 VILLGACALQAALHPGKEIHAYILRMG-----VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R------------ 456 (676)
Q Consensus 396 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------------ 456 (676)
..+..+|...+.+++|..++..+.... .+++......|..+|...+++++|..+++++.+ |
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 410 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE 410 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence 777888888888888888887776543 122333356778888888888888888887753 1
Q ss_pred -C--c-chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHH
Q 005802 457 -D--L-VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDH 531 (676)
Q Consensus 457 -~--~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 531 (676)
| - ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.++... .+.|+ ..+
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~ 486 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLIL 486 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHH
Confidence 1 1 124456777889999999999999998753 3467788888889999999999999998775 45677 777
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHh
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
....+..+...|++.+|..+.++.. ..|+......+-.....+..++
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r~~~~h~~~~ 534 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDRQRKVHNMYE 534 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhhhHH
Confidence 7788899999999999999988776 4454444444333333333333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-13 Score=125.28 Aligned_cols=322 Identities=12% Similarity=0.159 Sum_probs=183.2
Q ss_pred cccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHH--HccCCcHHHH-HHHHHHHHhcCCCCCchh
Q 005802 87 LVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLC--VKLLNVGFGR-QLHAFMVKTSNDASGFAV 163 (676)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 163 (676)
+.+=|.|+.. ..+|... ++.-+|+.|++ .++..+...-..+++.. .+..++--++ +-|-.|.+.|-
T Consensus 116 V~~E~nL~km-IS~~EvK-Ds~ilY~~m~~--e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E------- 184 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVK-DSCILYERMRS--ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE------- 184 (625)
T ss_pred hcchhHHHHH-Hhhcccc-hhHHHHHHHHh--cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-------
Confidence 4566677765 4677888 88889999998 77777776665555533 2333333221 11222222211
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHH
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEG 243 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (676)
.+..+| +.|.+.+ ++.+.. +.+..+|.+||.++|+--..+.|
T Consensus 185 --------------------------~S~~sW--------K~G~vAd---L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA 226 (625)
T KOG4422|consen 185 --------------------------DSTSSW--------KSGAVAD---LLFETL-PKTDETVSIMIAGLCKFSSLERA 226 (625)
T ss_pred --------------------------cccccc--------ccccHHH---HHHhhc-CCCchhHHHHHHHHHHHHhHHHH
Confidence 112222 3444433 333333 45667788888888888888888
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 005802 244 LKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR 323 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 323 (676)
.++|++-.....+.+..+|+.+|.+-.-..+ .+++.+|......||..|+|+++++..+.|+++.|...+
T Consensus 227 ~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa------ 296 (625)
T KOG4422|consen 227 RELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA------ 296 (625)
T ss_pred HHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH------
Confidence 8888888777777888888888876543333 677788888888888888888888888888887776222
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHHcCChH-HHHHHHHHHHH---cCCC----CCC
Q 005802 324 NSFSISSMIVGYSLQGNMEEARRHFDSLT----EKNVVVWTALFSGYVKAQNCE-ALFDLLSEFVT---KEGV----VTD 391 (676)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~---~~~~----~p~ 391 (676)
.+++.+|+ +|...+|..+|..+++.++.. .+..++.+++. ...+ +.|
T Consensus 297 ---------------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 297 ---------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred ---------------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 23333333 355555666666555555542 34444444421 1111 123
Q ss_pred HhHHHHHHHHHHhhcChhHHHHHHHHHHHcC----CCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCcch
Q 005802 392 ALILVILLGACALQAALHPGKEIHAYILRMG----VQMDK---KLISTLVDMYSKCGNMTYAEIIFQNFIE----RDLVL 460 (676)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 460 (676)
...|...+..|.+..+.+.|..+........ +.|+. .-|..+..+.|+....+.-...|+.|.. |+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 4456666677777777777766665554321 12221 1233344444555555555555555542 23334
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKG 488 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g 488 (676)
...++++....|+++-.-++|..++..|
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 4444455555555555555555555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-14 Score=129.42 Aligned_cols=402 Identities=12% Similarity=0.073 Sum_probs=277.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCC--Cch-HHHHHhccCCC-----------------------CCc
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHN--LLR-ESRKLFDEMPE-----------------------RNV 56 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~-~a~~~~~~~~~-----------------------~~~ 56 (676)
++.+.++.-++++|.+.|.+.+...-..|+..-+..+ ++. .-++.|-.|.. .+.
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~ 207 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTD 207 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCc
Confidence 5778889999999999999999988877776655432 222 22334444431 356
Q ss_pred chHHHHHHHHHhcCChHHHHHHhccCC----CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHH
Q 005802 57 FSWNTIISACIKSHDLKQARSLFDSSP----HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTL 132 (676)
Q Consensus 57 ~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll 132 (676)
.+|..+|.++|+-...+.|.+++.+.. +-+..+||.+|.+-.-. .-.+++.+|.+ ..++||..|+|+++
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-----~~K~Lv~EMis--qkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-----VGKKLVAEMIS--QKMTPNLFTFNALL 280 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-----ccHHHHHHHHH--hhcCCchHhHHHHH
Confidence 799999999999999999999998876 35667888888876433 44789999999 88999999999999
Q ss_pred HHHHccCCcH----HHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHH-HHhhhhcCC-----------CCchhhHH
Q 005802 133 NLCVKLLNVG----FGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEA-CRVFEGCTE-----------EVNLISKN 196 (676)
Q Consensus 133 ~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~-----------~~~~~~~~ 196 (676)
.+.++.|+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+. ..++.++.. +.+...+.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999776 4678999999999999999999999999999988653 333332221 23455667
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC-------CCC---eeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHH
Q 005802 197 AMVAACCREGEMEMALKTFWRQPE-------LND---AVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASAL 266 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 266 (676)
.-++.|.+..+.+-|.++-.-+.. .|+ ..-|..+....++....+...+.|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 778888888888888777644332 122 2235667778888899999999999999887889999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHH
Q 005802 267 SACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF---SISSMIVGYSLQGNMEE 343 (676)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~ 343 (676)
++....+.++-.-+++..++..|........--++..+++.. ..|+.. .+.....-++ ..-.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~ 507 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEA 507 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999999998886555444444444444332 011111 1111111110 001111
Q ss_pred HHHHHhccCC--CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC---HhHHHHHHHHHHhhcChhHHHHHHHHH
Q 005802 344 ARRHFDSLTE--KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD---ALILVILLGACALQAALHPGKEIHAYI 418 (676)
Q Consensus 344 a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~ 418 (676)
....-.++.. -.....+.....+.+.|+..+|.++|..+.....--|- .....-++......++...|..+++.+
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111122222 23445677777778888888888888877433333333 333335555566667777777777777
Q ss_pred HHcCCC
Q 005802 419 LRMGVQ 424 (676)
Q Consensus 419 ~~~~~~ 424 (676)
...+.+
T Consensus 588 ~~~n~~ 593 (625)
T KOG4422|consen 588 SAFNLP 593 (625)
T ss_pred HHcCch
Confidence 655543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-15 Score=135.51 Aligned_cols=438 Identities=12% Similarity=0.045 Sum_probs=285.5
Q ss_pred HHHHHhhhccchHHHHHhhhhcCC---CCchh-hHHHHHHHHHhcCChhHHHHHHhhCCC-CCCe------eeHHHHHHH
Q 005802 165 SLIDMYSKCRCYEEACRVFEGCTE---EVNLI-SKNAMVAACCREGEMEMALKTFWRQPE-LNDA------VSWNTLISG 233 (676)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~~li~~ 233 (676)
.|.+-|.......+|+..++-+.+ -|+.. .-..+-..+.+...+.+|++.++.... .|++ ...+.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 334445555666777777765443 11111 112234556667777888777754432 2221 123334445
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc------------hhHHHHHH
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISN------------PFVSSGIV 301 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~l~ 301 (676)
|++.|+++.|+.-|+...+ ..|+..+-..|+-++...|+.+...+.|..++.....+| ....+.-+
T Consensus 286 fiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 7788899999988888776 458877766666677778888888888888876432222 22222211
Q ss_pred -----HHHHhcCC--hHHHHHHHHhcCC----CCch---hH----------HH--------HHHHHHhcCCHHHHHHHHh
Q 005802 302 -----DVYCKCEN--MNYAESMLLLKGV----RNSF---SI----------SS--------MIVGYSLQGNMEEARRHFD 349 (676)
Q Consensus 302 -----~~~~~~g~--~~~a~~~~~~~~~----~~~~---~~----------~~--------li~~~~~~~~~~~a~~~~~ 349 (676)
.-.-+... .+.+...-.++.. |+-. -| .. -...+.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11111111 1122111112222 2210 00 00 1123678899999999888
Q ss_pred ccCCCCchhHHHHHH-----HHHH-cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCC
Q 005802 350 SLTEKNVVVWTALFS-----GYVK-AQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGV 423 (676)
Q Consensus 350 ~~~~~~~~~~~~li~-----~~~~-~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 423 (676)
-+.++|..+-.+... -|.+ -.++..|..+-+..+.. -+-+......--......|+++.|.+.+++.....-
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 887765544332222 2222 23455555554443111 111222222222223457899999999999887653
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 424 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
.-....|+ +.-.+...|++++|+..|-++. ..++.+...+...|....+..+|++++.+.... ++.|+..+..|.
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 33333333 3345678899999999988764 567778888899999999999999999887663 444677888999
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHH-HHhCCHh
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVC-RLNRNAE 578 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~ 578 (676)
..|-+.|+-..|.+.+-.--. -++-+..+...|...|....-+++|+.+|++.. ..|+..-|..++..| .+.|+++
T Consensus 600 dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999988764422 344458898899999999999999999999987 899999999888865 6889999
Q ss_pred HHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 579 LAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
+|..+|+......|.+......|+.++...|.
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999887774
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-11 Score=120.27 Aligned_cols=572 Identities=12% Similarity=0.035 Sum_probs=408.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHH------------HHHH----
Q 005802 4 LNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE---RNVFSWN------------TIIS---- 64 (676)
Q Consensus 4 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~------------~ll~---- 64 (676)
+|...|..++.++.+.+ |.++..|-.-...=-..|.+.-|..+..+-.+ .+..+|- +++.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 57788899999999888 55666776666666667777777777654322 1122222 2221
Q ss_pred -------HHHhcCChH----HHHHHhccCCC--C-CcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHH
Q 005802 65 -------ACIKSHDLK----QARSLFDSSPH--K-DLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTS 130 (676)
Q Consensus 65 -------~~~~~g~~~----~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ 130 (676)
.++++-+++ .-.++++...+ | ++..|...+ .-...+ .|.-++.+..+ .-|.. ..
T Consensus 344 ~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~-darilL~rAve----ccp~s---~d 411 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPE-DARILLERAVE----CCPQS---MD 411 (913)
T ss_pred hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChH-HHHHHHHHHHH----hccch---HH
Confidence 122222221 12223332221 3 333344333 345666 68888888775 33322 12
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC-------CCchhhHHHHHHHHH
Q 005802 131 TLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE-------EVNLISKNAMVAACC 203 (676)
Q Consensus 131 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~l~~~~~ 203 (676)
|.-++++...++.|..+++...+. ++.+..+|.+-...--..|+.+...+++++-.. ..+..-|-.=...|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344566667788889998888776 555666777777777778888888877764322 223333434444444
Q ss_pred hcCChhHHHHHHhhCCC-----CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHH
Q 005802 204 REGEMEMALKTFWRQPE-----LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKC 277 (676)
Q Consensus 204 ~~g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~ 277 (676)
+.|.+--+..+...... .---.+|+.-...|.+.+.++-|..+|...++ +-| +...|..+...--..|..+.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHH
Confidence 44544444444332211 11235788888889999999999999998887 444 44566666666667889999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 005802 278 AKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR---NSFSISSMIVGYSLQGNMEEARRHFDSLTE- 353 (676)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~- 353 (676)
...++++++..- +-....+-.....+...|++..|..++.+..+- +...|-.-+........++.|..+|.+...
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 999999999875 334556667777888899999999999887653 345677888888999999999999998875
Q ss_pred -CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHH
Q 005802 354 -KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLIST 432 (676)
Q Consensus 354 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 432 (676)
++...|.--+...--.++.++|++++++.+ ...+.-...|..+-..+-+.++.+.|...|..-.+. +|..+..+-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~l--k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEAL--KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH--HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 566677666666667789999999998753 333444556777777888888999988887655443 5677888999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
|...-.+.|.+-+|..+++... .| +...|-..|++-.+.|..+.|..++.+..+. ++.+...|..-|...-+.++-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 9999999999999999999875 33 7789999999999999999999999988875 555677888888888777776
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
..+...+++. .-|+...-.+...+....++++|.+.|.+.. .+....+|.-+...+.++|.-++-.+++.+.
T Consensus 804 Tks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 804 TKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6666666654 3467778888999999999999999999988 4456778888999999999999999999999
Q ss_pred HcccCCCCccHHHHH
Q 005802 588 LRLEGNNKARYVQLA 602 (676)
Q Consensus 588 ~~~~p~~~~~~~~l~ 602 (676)
....|.....|....
T Consensus 878 ~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 878 ETAEPTHGELWQAVS 892 (913)
T ss_pred hccCCCCCcHHHHHh
Confidence 999999887776654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-12 Score=132.04 Aligned_cols=541 Identities=12% Similarity=0.059 Sum_probs=271.4
Q ss_pred CCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhcc---CCCCCcccHHHHHHHHHhcCCChhHHHHHH
Q 005802 38 HNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDS---SPHKDLVTYNSMLCGYINAEGYEADALKLF 111 (676)
Q Consensus 38 ~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 111 (676)
.|++++|.+++.++.+ .+...|.+|...|-..|+.+++...+-. ..+.|..-|..+-.-..+.|++. .|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~-qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN-QARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH-HHHHHH
Confidence 3777777777776654 3445677777777777777776665532 22344556666666666666676 777777
Q ss_pred HHhHhccCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhh----HHHHHhhhccchHHHHHhhhhc
Q 005802 112 IEMQSADEHIRM-DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVS----SLIDMYSKCRCYEEACRVFEGC 186 (676)
Q Consensus 112 ~~m~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~ 186 (676)
.+.++ ..| +...+-.=...|-+.|+...|..-+.++.+...+.|..-.. ..++.+...++-+.|.+.++..
T Consensus 231 ~rAI~----~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 231 SRAIQ----ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHh----cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77665 233 33333444555666677777777776666663322222111 2233444445555555555543
Q ss_pred CC----CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-------------------------CCCeeeHHH----HHHH
Q 005802 187 TE----EVNLISKNAMVAACCREGEMEMALKTFWRQPE-------------------------LNDAVSWNT----LISG 233 (676)
Q Consensus 187 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~~----li~~ 233 (676)
.. ..+...++.++..+.+...++.|......... .++..+|+. ++-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 32 22333445555555555555555444322210 001111110 1112
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC--cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRW--NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMN 311 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 311 (676)
+......+....+.....+..+.| +...|.-+..++...|++..|..++..+.......+..+|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 222222222333333333333222 223444444555555555555555555444433333444555555555555555
Q ss_pred HHHHHHHhcCCCCch---hHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005802 312 YAESMLLLKGVRNSF---SISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGV 388 (676)
Q Consensus 312 ~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 388 (676)
.|.+.+......++. .-.+|...+.+.|+.++|.+.+..+..||... . ...+.
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~-----------------------~-e~~a~ 522 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN-----------------------A-EACAW 522 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc-----------------------h-hhccc
Confidence 555544444432222 22223333444455555555554444333110 0 11122
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc----------------------CCCCChhHHHHHHHHHHhcCCHHHH
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRM----------------------GVQMDKKLISTLVDMYSKCGNMTYA 446 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~g~~~~A 446 (676)
.|+..........+...|+.++-..+...+... +.+-...+...++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 223333333333333444433322222221110 0111222222333333333332222
Q ss_pred HHHHhhc--------CCCCc----chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHh---HH-HHHHHHhhccCcH
Q 005802 447 EIIFQNF--------IERDL----VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAV---TF-VAILSAFRHCGSV 509 (676)
Q Consensus 447 ~~~~~~~--------~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~---~~-~~ll~~~~~~g~~ 509 (676)
..-...- ..-+. ..+.-++.++++.+++++|+.+...+......- +.. .+ ...+.++...+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 2211111 01111 234556778899999999999999888643221 222 22 3345667788999
Q ss_pred HHHHHHHHHchhhcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHH--HHHHHhCCHhHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPE---TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFL--NVCRLNRNAELAGEA 583 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~--~~~~~~~~~~~a~~~ 583 (676)
..|...++.|...++...+ ...|++..+.+.+.++-.--..++.... .+|+......++ ......+.+.-|+..
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHH
Confidence 9999999999876444333 4566666666666666555555555444 333332222222 235677889999999
Q ss_pred HHHHHcccCCCCccHHHHHHHHHh
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
+-++...+|++|-+..+|+-++..
T Consensus 763 y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 763 YMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHH
Confidence 999999999999888888776644
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=144.72 Aligned_cols=256 Identities=16% Similarity=0.119 Sum_probs=115.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHH-HHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 362 LFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVI-LLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
+...+.+.|++++|++++++. .....+|+...|.. +...+...++.+.|...++.+...+. .++..+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~-~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKA-AQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 355666777778888777553 22222344444443 33344567777888888877776653 255566677777 688
Q ss_pred CCHHHHHHHHhhcC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHhhccCcHHHHHHHHH
Q 005802 441 GNMTYAEIIFQNFI--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKG-IKPDAVTFVAILSAFRHCGSVEMGEKYFN 517 (676)
Q Consensus 441 g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 517 (676)
+++++|.+++.... .++...+..++..+.+.++++++..++++..... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999988887664 3456677788888999999999999999987633 34567778888889999999999999999
Q ss_pred HchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 518 SMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 518 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+..+. .|+ ......++..+...|+.+++.++++... .+.++..|..+..++...|++++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99854 576 7888899999999999999888877766 35677889999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 595 KARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.....++.++...|+.++|.++++++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=114.91 Aligned_cols=423 Identities=10% Similarity=0.066 Sum_probs=279.6
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCC---CCCeeeHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHh----HHHHHHHH
Q 005802 197 AMVAACCREGEMEMALKTFWRQPE---LNDAVSWN-TLISGYVQNGDAEEGLKLFVRMGENGVRWNEH----TFASALSA 268 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~ 268 (676)
.|..-|.......+|+..++-+.. -||..... .+-..+.+...+..|+++|+.....-...+.. .++.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345556667778888888766543 33333221 23445778888999999999877632111222 23333345
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC----------------CCchhHHH--
Q 005802 269 CCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV----------------RNSFSISS-- 330 (676)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~-- 330 (676)
+.+.|.++.|...|+...+.. |+..+--.|+-++..-|+-+...+.|.++.. |+....+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 778999999999999988864 7766666666677778898988888887664 11122222
Q ss_pred ---HHHHHHhcC--CHHHHH----HHHhccCCCCch-------------hHHH--------HHHHHHHcCChHHHHHHHH
Q 005802 331 ---MIVGYSLQG--NMEEAR----RHFDSLTEKNVV-------------VWTA--------LFSGYVKAQNCEALFDLLS 380 (676)
Q Consensus 331 ---li~~~~~~~--~~~~a~----~~~~~~~~~~~~-------------~~~~--------li~~~~~~~~~~~a~~~~~ 380 (676)
.+.-.-+.+ +.++++ ++..-...|+.. .+.. -...+.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 222222222 122222 222222223211 0111 1235788999999999998
Q ss_pred HHHHcCCCCCCHhHHHHHHHHHHh--hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc
Q 005802 381 EFVTKEGVVTDALILVILLGACAL--QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDL 458 (676)
Q Consensus 381 ~m~~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 458 (676)
-+ .....+.-+..-+.|-..+.. ..++..|.+.-....... .-++.....-.+.-...|++++|.+.|.+....|.
T Consensus 444 v~-~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 444 VF-EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HH-HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 87 554444333333333222222 334555555554444322 12222222223334567999999999999998887
Q ss_pred chHHHHHH---HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHH
Q 005802 459 VLYNVMIA---CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACM 535 (676)
Q Consensus 459 ~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 535 (676)
.+-.+|.. .+-..|+.++|+..|-++..- +..+...+..+.+.|....+...|++++.+... -++.|+.+...|
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHH
Confidence 76655543 456789999999999887653 334667777888889999999999999988753 334449999999
Q ss_pred HHHHhhcCCHHHHHHHHH-hCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 536 IDLYGRANQLEKAIEFMK-SIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
.+.|-+.|+-..|.+..- ... .+-+..+..-|...|....-+++++.+++++--+.|+....-..++.++.+.|++.+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 999999999999998754 444 555777777677777777788999999999999999876666666778888999999
Q ss_pred HHHHHHHHHhCCC
Q 005802 614 MGRIRKQMRGMKG 626 (676)
Q Consensus 614 A~~~~~~~~~~~~ 626 (676)
|.++++...++-+
T Consensus 679 a~d~yk~~hrkfp 691 (840)
T KOG2003|consen 679 AFDLYKDIHRKFP 691 (840)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999887544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-10 Score=106.92 Aligned_cols=426 Identities=13% Similarity=0.106 Sum_probs=269.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC--CCc-chHHHHHHHHHhcCChHHHHHHh
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE--RNV-FSWNTIISACIKSHDLKQARSLF 79 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~~~~~~g~~~~A~~~~ 79 (676)
++++..|..+|++.+... ..+...|-.-+.+=.+...+..|..++++... |.+ ..|--.+.+--.-|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 467788888888888766 44566777777777888888999999888654 433 35556666667778899999999
Q ss_pred ccCC--CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCC
Q 005802 80 DSSP--HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSND 157 (676)
Q Consensus 80 ~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (676)
+... +|+...|++.|+.=.+.+..+ .|..+|++..- +.|+..+|..-.+.=.+.|.+..+.++++...+.-..
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeie-raR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIE-RARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHH-HHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 8754 789999999999888888888 99999998865 6788888888888888888888898888887765111
Q ss_pred --CCCchhhHHHHHhhhccchHHHHHhhh----hcCCCCchhhHHHHHHHHHhcCChhHHHHHH---hh------CCC-C
Q 005802 158 --ASGFAVSSLIDMYSKCRCYEEACRVFE----GCTEEVNLISKNAMVAACCREGEMEMALKTF---WR------QPE-L 221 (676)
Q Consensus 158 --~~~~~~~~li~~~~~~g~~~~A~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---~~------~~~-~ 221 (676)
.....+.+....-.++..++.|.-+|. .+++......|..+...--+.|+.....+.. ++ +.. +
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 001134444444445566666666653 4444333455555555444555543333222 11 111 2
Q ss_pred CCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHh-------HHHHHHHHH---hCCCChHHHHHHHHHHHHhCCC
Q 005802 222 NDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEH-------TFASALSAC---CGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
-|-.+|-..++.--..|+.+...++|+.... +++|-.. .|.-+=-+| ....+++.+.++++..++. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 2455555566666666777777777777765 3444211 111111111 1345555566666555552 23
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 005802 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQN 371 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (676)
...+++..+--+| ...-.+..+
T Consensus 398 HkkFtFaKiWlmy----------------------------------------------------------A~feIRq~~ 419 (677)
T KOG1915|consen 398 HKKFTFAKIWLMY----------------------------------------------------------AQFEIRQLN 419 (677)
T ss_pred cccchHHHHHHHH----------------------------------------------------------HHHHHHHcc
Confidence 3344444333222 233345556
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 005802 372 CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQ 451 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (676)
...|.+++-. .-|..|-..+|...|..-.+.+.++.+..+++..++.+ |.+..++......-...|+.+.|..+|.
T Consensus 420 l~~ARkiLG~---AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 420 LTGARKILGN---AIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred cHHHHHHHHH---HhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666666663 34667777777777777777777777777777777765 4556667666677777788888888877
Q ss_pred hcC-CC----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 452 NFI-ER----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 452 ~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
-.. +| ....|.+.|+--...|.++.|..+++++++. .+....|..+.
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 554 33 2335666666666778888888888888774 23333444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-10 Score=106.39 Aligned_cols=480 Identities=13% Similarity=0.057 Sum_probs=284.0
Q ss_pred ccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC-CC-chhhHHHHHHHHHhcCChhHHHHH
Q 005802 137 KLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE-EV-NLISKNAMVAACCREGEMEMALKT 214 (676)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~ 214 (676)
..+++..|..+|+..+... ..+...|-..+.+-.++..+..|..+++.... -| -...|-..+-+--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3445555666666655542 12222455555555666666666666665433 12 122344445555556777777777
Q ss_pred Hhh-CCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHh-CC-C
Q 005802 215 FWR-QPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKN-GL-I 291 (676)
Q Consensus 215 ~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~ 291 (676)
|++ |.-.|+..+|++.|..=.+-..++.|..+|+...- +.|+..+|.-..+.-.+.|++..+..+|..+++. |- .
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 754 33367777777777776677777777777777665 4477777666666666677777777777666553 21 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC---chhHHHHHHHHHhcCCHH---HHHHH-----HhccCCCCc--
Q 005802 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGV--RN---SFSISSMIVGYSLQGNME---EARRH-----FDSLTEKNV-- 356 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~~~~~---~a~~~-----~~~~~~~~~-- 356 (676)
.+...+.+....=.++..++.|.-+++-... |. ...|..+..---+-|+.. +++-- ++.+...|+
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 1222333333333345556666655543332 11 122333333222333332 22221 222223333
Q ss_pred -hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh--H---HHHH-HH-HH---HhhcChhHHHHHHHHHHHcCCCC
Q 005802 357 -VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL--I---LVIL-LG-AC---ALQAALHPGKEIHAYILRMGVQM 425 (676)
Q Consensus 357 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~---~~~l-l~-~~---~~~~~~~~a~~~~~~~~~~~~~~ 425 (676)
.+|-..+..--..|+.+...++|+.. -.+++|-.. . |..| |+ +| ....+.+.+.++++..++ -+|.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErA--Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERA--IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHH--HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 34444555555667888888888874 345555321 0 1111 11 11 245677778888887777 3455
Q ss_pred ChhHHHHHHHHH----HhcCCHHHHHHHHhhcCC--CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 005802 426 DKKLISTLVDMY----SKCGNMTYAEIIFQNFIE--RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI 499 (676)
Q Consensus 426 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (676)
...||.-+=-+| .++.++..|.+++...+. |...+|...|..-.+.++++.+..++++.++-+ +-|..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 566665543333 467788888888887763 455677777888888888999999999988853 2256677777
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHH-----H
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCR-----L 573 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-----~ 573 (676)
...-...|+.+.|..+|+...+...+......|.+.|+.-...|.+++|..++++.. ..+...+|.++...-. .
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 777777889999999998887653333335567777777788899999999988887 4555667777766433 2
Q ss_pred hC-----------CHhHHHHHHHHHHcccCC--CCccHHHHHHHH----HhcCChhHHHHHHHHHHh
Q 005802 574 NR-----------NAELAGEAEEKLLRLEGN--NKARYVQLANVY----AAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 574 ~~-----------~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~ 623 (676)
.+ +...|..+|+++.....+ +..--..|..+. ...|.-.+...+-.+|.+
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 33 567888999988766222 222333333333 445766666667666654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.6e-12 Score=124.75 Aligned_cols=274 Identities=9% Similarity=0.064 Sum_probs=167.2
Q ss_pred CCHHHHHHHHhccCCC--Cchh-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHH--HHHHHHHhhcChhHHHH
Q 005802 339 GNMEEARRHFDSLTEK--NVVV-WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILV--ILLGACALQAALHPGKE 413 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 413 (676)
|+++.|.+.+....+. ++.. |-.......+.|+++.|...+.++ .+ ..|+..... .....+...|+++.|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A-~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERA-AE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 5555555555544332 1222 222233335566666666666665 22 233332222 22345556666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-----------chHHHHHHHHHHcCChhHHHHHHH
Q 005802 414 IHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDL-----------VLYNVMIACYAHHGHEEKAILLFE 482 (676)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~ 482 (676)
.++.+.+.. |.++.....+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665554 44555666666677777777777766666653211 123333333334445555556666
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCc
Q 005802 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEED 560 (676)
Q Consensus 483 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 560 (676)
.+-+. .+.+......+..++...|+.++|..+++...+. .|+.... ++.+....++.+++++.+++.. .+.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 55332 2346667777778888888888888888877643 4444322 2333345588888888887776 4446
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 561 AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 561 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+..+..+...|...+++++|...++++.+..|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667788888888888888888888888888875 4467888888888888888888886643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-11 Score=112.20 Aligned_cols=214 Identities=14% Similarity=0.158 Sum_probs=171.3
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILL 480 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 480 (676)
-.|+.-.+..-++..+.....++ ..|--+..+|....+.++....|++.. +.|+.+|..-.+...-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45677788888888887653333 336667778999999999999998775 44778898888888888999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC
Q 005802 481 FEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TE 558 (676)
Q Consensus 481 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 558 (676)
|++.+. +.|+ ...|..+--+..+.+.+++++..|++.+.++ +-.+..|+.....+..++++++|.+.|+... ..
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999987 4564 5566666667778899999999999998753 3338889999999999999999999999877 34
Q ss_pred Cc---------HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 559 ED---------AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 559 ~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
|. +.+-..++.. .=.+++.+|+.+++++++++|.....|..|+.+..+.|+.++|+++|++-..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 43 2222222222 2338999999999999999999999999999999999999999999987643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-12 Score=126.39 Aligned_cols=278 Identities=15% Similarity=0.075 Sum_probs=218.6
Q ss_pred CCHHHHHHHHhccCC--CCc-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCHhHHHHHHHHHHhhcChhHHHHH
Q 005802 339 GNMEEARRHFDSLTE--KNV-VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVV-TDALILVILLGACALQAALHPGKEI 414 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~ 414 (676)
-+..+|...|..+++ +|. .....+..+|...+++++|.++|+......... -+..+|.+.+..+-+. -+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 356778888888654 233 344567788999999999999999874433332 3556777777765432 22233
Q ss_pred HH-HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 005802 415 HA-YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK 490 (676)
Q Consensus 415 ~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 490 (676)
+. .+.+. -+..+.+|.++.++|.-+++.+.|++.|++...-| ..+|+.+..-+.....+|.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 32 22332 36678899999999999999999999999987544 45788788888888999999999998764 23
Q ss_pred CC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 491 PD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 491 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
|. -..|..+...|.+.++++.|.-.|++.. .+.|. ......+...+-+.|+.++|+.+++++. .+.++...-.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 32 3355567778999999999999999887 67787 6677788888999999999999999988 5557777777
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
-+..+...+++++|...+|++.+..|++...|..++.+|.+.|+.+.|+.-+--|.+..+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 777888999999999999999999999999999999999999999999998887766544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-10 Score=114.97 Aligned_cols=536 Identities=11% Similarity=0.006 Sum_probs=297.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHhccCCC----CCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhH
Q 005802 53 ERNVFSWNTIISACIKSHDLKQARSLFDSSPH----KDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTV 128 (676)
Q Consensus 53 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~ 128 (676)
.||..+|.++|..||..|+.+.|- +|..|.- -+...++.++.+..+.++.+ ..-.|.+.||
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~E--------------npkep~aDty 86 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAE--------------NPKEPLADTY 86 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccccc--------------CCCCCchhHH
Confidence 488899999999999999999998 8888873 24456888888877777777 4457888999
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCC-chhhHHHHHHHHHhcCC
Q 005802 129 TSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEV-NLISKNAMVAACCREGE 207 (676)
Q Consensus 129 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 207 (676)
..++.+|...||+..-..+-+.+. .++..+...|--..-..++-.+.-.| ........+......|-
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL 154 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH
Confidence 999999999999877333322222 22333444444444444444322211 12223345666677888
Q ss_pred hhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHH
Q 005802 208 MEMALKTFWRQPELNDAVSWNTLISGYVQNGDA-EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVL 286 (676)
Q Consensus 208 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 286 (676)
++.+++++..++...-...+..+++-+.....+ ++-..+-+...+ .|++.+|..++.+....|+.+.|..++.+|.
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 999999998887522111222234444433332 222222222222 5999999999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHH
Q 005802 287 KNGLISNPFVSSGIVDVYCKCENMNYAESMLLLK----GVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTAL 362 (676)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 362 (676)
+.|++.+.+-|-.|+-+ .++..-++.+++.+ ..|+..|+...+-.+..+|....+.+..+.-..-....+..+
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 99999999887777765 66666666655544 458888988887777775542222221111000011122333
Q ss_pred HHHHHHcCCh-----HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC---CChhHHHHHH
Q 005802 363 FSGYVKAQNC-----EALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ---MDKKLISTLV 434 (676)
Q Consensus 363 i~~~~~~~~~-----~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~ 434 (676)
..+.....+. .-.+..+.+- -..|+......|..... ....|.-++..++...+..-... .+...+..++
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~-fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKL-FLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHH-HHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 3221111111 1122222222 12233222222322222 22356666666665555432111 1222333333
Q ss_pred HHHHhcCCHHHHHHHHh--hcCCC--CcchHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-------CHhHHHHH
Q 005802 435 DMYSKCGNMTYAEIIFQ--NFIER--DLVLYNVMIACYAHHGHEEKAILLFEEMLE----KGIKP-------DAVTFVAI 499 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-------~~~~~~~l 499 (676)
.-|.+.-+..-...++. ..... ++..-..+.....+. +...++.-+..+.. +-..| -...-+.+
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 33322111100000000 00000 000111111111111 11111111111111 00111 11123445
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHh
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTE-----EDAVILGSFLNVCRLN 574 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 574 (676)
+..|++.-+..++...-+..... -+ ...|..|++.+......+.|..+..+...+ -+..-+..+.+...+.
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 55666666666666555554322 22 277888999999999999999888887611 2334456666777788
Q ss_pred CCHhHHHHHHHHHHcc---cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005802 575 RNAELAGEAEEKLLRL---EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNR 628 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 628 (676)
+....+..+++++.+. .|.-..+...+.+.....|+.+.-.+..+-+...|.-.
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8888888888877765 33334556667777777888888888888777766643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-08 Score=97.98 Aligned_cols=539 Identities=13% Similarity=0.115 Sum_probs=281.0
Q ss_pred CCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhccCCC-----CCcccHHHHH
Q 005802 20 GLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPH-----KDLVTYNSML 94 (676)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ll 94 (676)
+..|+...|-.+=+++ +.+.....+|+ ..|-..+..+.++|++..-+..|+.... .-...|...+
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 4445554555444443 33444444443 3555666666677777666666665331 2334566666
Q ss_pred HHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHh------cCCCCCchhhHHHH
Q 005802 95 CGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKT------SNDASGFAVSSLID 168 (676)
Q Consensus 95 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~ 168 (676)
......+-++ -++.+|.+..+ +.|.. -+.-+..+...++.++|.+.+...... ..+.+...|..+.+
T Consensus 146 ~Fv~~~~lPe-ts~rvyrRYLk----~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd 218 (835)
T KOG2047|consen 146 KFVESHGLPE-TSIRVYRRYLK----VAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD 218 (835)
T ss_pred HHHHhCCChH-HHHHHHHHHHh----cCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence 6666666666 77777766654 33333 555566666666666666666555432 11222334555555
Q ss_pred HhhhccchHH---HHHhhhhcCC---CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCC--
Q 005802 169 MYSKCRCYEE---ACRVFEGCTE---EVNLISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGD-- 239 (676)
Q Consensus 169 ~~~~~g~~~~---A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~-- 239 (676)
..++.-+.-. ...++..+.. +.-...|.+|.+-|.+.|.+++|..++++... .-++..|..+.++|++-..
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~ 298 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESC 298 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHH
Confidence 4444322221 1222332222 11234566666777777777777766655331 2233444444444443211
Q ss_pred --------------------hhHHHHHHHHHHhCCC-----------CCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005802 240 --------------------AEEGLKLFVRMGENGV-----------RWNEHTFASALSACCGLRNVKCAKEIHSWVLKN 288 (676)
Q Consensus 240 --------------------~~~a~~~~~~m~~~g~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (676)
++-.+.-|+.+...+. +-+..++..-. -...|+..+....+.++++.
T Consensus 299 ~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~ 376 (835)
T KOG2047|consen 299 VAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT 376 (835)
T ss_pred HHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc
Confidence 1111112222221110 00011111000 01123333333333333332
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CchhHHHHHHHHHhcCCHHHHHHHHhccCCCCch-------hH
Q 005802 289 GLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR--NSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVV-------VW 359 (676)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~ 359 (676)
- .| ...+ -...|..+...|-..|+++.|..+|++..+-+-. +|
T Consensus 377 v-dP---------------------------~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 377 V-DP---------------------------KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred c-Cc---------------------------ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHH
Confidence 0 11 0000 1123444555555555555555666655542222 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC-----------CC------CHhHHHHHHHHHHhhcChhHHHHHHHHHHHcC
Q 005802 360 TALFSGYVKAQNCEALFDLLSEFVTKEGV-----------VT------DALILVILLGACALQAALHPGKEIHAYILRMG 422 (676)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------~p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 422 (676)
-.....=.+..+++.|+++.+.. ..-.- ++ +...+...+..--..|-++....+++.+.+..
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A-~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRA-THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhh-hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 22223333445555565555543 11100 01 12234444444456677888888999998877
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCcc-hHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHh
Q 005802 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE----RDLV-LYNVMIACYAH---HGHEEKAILLFEEMLEKGIKPDAV 494 (676)
Q Consensus 423 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~ 494 (676)
+. ++.+.....-.+-...-++++.+++++-+. |++. .|+..+.-+.+ ....+.|..+|++..+ |++|...
T Consensus 508 ia-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 508 IA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred cC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 53 333333333344556678999999998752 3432 67776665554 3468999999999999 7777655
Q ss_pred HHHHHHHH--hhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHH-
Q 005802 495 TFVAILSA--FRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFL- 568 (676)
Q Consensus 495 ~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~- 568 (676)
-+..|+-+ -.+.|....|+.++++... ++++. ...|+.+|.--...=-...-..+++++. .-|+...-...+
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLR 663 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHH
Confidence 44334322 2356889999999999854 55555 5677777654333222233334444443 234444333333
Q ss_pred --HHHHHhCCHhHHHHHHHHHHcc-cCC-CCccHHHHHHHHHhcCC
Q 005802 569 --NVCRLNRNAELAGEAEEKLLRL-EGN-NKARYVQLANVYAAEGN 610 (676)
Q Consensus 569 --~~~~~~~~~~~a~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~ 610 (676)
..-.+.|..++|..++...-+. +|. +...|.+.-.--.+.||
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 3456889999999999999888 444 45667777777788888
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-12 Score=122.39 Aligned_cols=251 Identities=14% Similarity=0.155 Sum_probs=198.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHH
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGV--QMDKKLISTLVDMYSKCGNMTYAE 447 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 447 (676)
=+..+|+..|.+. .. .+.-+......+-.+|...+++++++.+|+.+.+... --+..+|.+.+--+-+.=.+..--
T Consensus 333 y~~~~A~~~~~kl-p~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKL-PS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhh-HH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 3567899999884 33 2333446777788899999999999999999987641 235567776665543322222222
Q ss_pred HHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCC
Q 005802 448 IIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKIS 526 (676)
Q Consensus 448 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (676)
+-+-++-+..+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ++.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~ 485 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVD 485 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCC
Confidence 222233345778999999999999999999999999998 566 56788877777888899999999999886 555
Q ss_pred CC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 527 PE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 527 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
|+ -..|-.|.-.|.++++++.|+-.|+++. ..| +.+....++..+.+.|+.++|+++++++.-++|.|+-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 55 4455567888999999999999999998 555 56667777788999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCc
Q 005802 604 VYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
++...+++++|+..++++++.-++
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcc
Confidence 999999999999999999986543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-11 Score=118.57 Aligned_cols=209 Identities=15% Similarity=0.106 Sum_probs=139.2
Q ss_pred HHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcC
Q 005802 346 RHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMG 422 (676)
Q Consensus 346 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 422 (676)
..++++.+ .++..+..+...|.+.|++++|.+++..+ .+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l-~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM-AKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHcCCCCHH-HHHHHH-----------------------
Confidence 55444443 24455666777777778888888888777 433322211 111000
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 005802 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI 499 (676)
Q Consensus 423 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (676)
...+..++.......+.+...++++.++ +.++.....+...+...|+.++|.+++++..+. .|+.... +
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 0011112222222334455566666665 236667777888888889999999988888773 4454322 3
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCH
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNA 577 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 577 (676)
+.+....++.+++.+..+...++ .|+ ...+.++...+.+.|++++|.+.|+... ..|+...+..+..++...|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 33444568889999999888754 344 6677788899999999999999998887 678888888888899999999
Q ss_pred hHHHHHHHHHHcc
Q 005802 578 ELAGEAEEKLLRL 590 (676)
Q Consensus 578 ~~a~~~~~~~~~~ 590 (676)
++|..++++...+
T Consensus 378 ~~A~~~~~~~l~~ 390 (398)
T PRK10747 378 EEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-11 Score=120.93 Aligned_cols=278 Identities=11% Similarity=0.088 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHhccCC--CCc-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh--HHHHHHHHHHhhcChhHHH
Q 005802 338 QGNMEEARRHFDSLTE--KNV-VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL--ILVILLGACALQAALHPGK 412 (676)
Q Consensus 338 ~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~ 412 (676)
.|+++.|.+.+.+..+ |++ ..+-....+..+.|+++.|.+.+.+. .+. .|+.. ............|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a-~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEA-AEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3444444455544433 221 12223334455556666666666554 221 12221 2222344445556666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHH----HHHHHHHcCChhHHHHHHHHHH
Q 005802 413 EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNV----MIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
..++.+.+.. |-++.+...+...+.+.|+++.|.+.+..+.+. +...+.. ........+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666655554 344455556666666666666666666655532 1111211 1111122222233333444444
Q ss_pred HCCC---CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHH---HHHHHHHHhhcCCHHHHHHHHHhCC--C
Q 005802 486 EKGI---KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDH---YACMIDLYGRANQLEKAIEFMKSIP--T 557 (676)
Q Consensus 486 ~~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~ 557 (676)
+... +.+...+..+...+...|+.++|.+.+++..++ .|+... ...........++.+.+.+.+++.. .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 125666777777788888888888888877754 344221 1111122233467777777777665 3
Q ss_pred CCcH--HHHHHHHHHHHHhCCHhHHHHHHH--HHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 558 EEDA--VILGSFLNVCRLNRNAELAGEAEE--KLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 558 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.++ ....++++.|.+.|++++|.+.++ .+.+..|++. .+.+|+.++.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455 667788888888888888888888 4666677644 466888999999999999888887543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-10 Score=109.78 Aligned_cols=265 Identities=11% Similarity=0.062 Sum_probs=207.1
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 005802 355 NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLV 434 (676)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 434 (676)
++........-+...+++.+..++..+.+...+..++...+ -|.++...|+...-..+-..+.+. .|..+.+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~--~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPL--HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHH--HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 33444455566778899999999999976665555554444 344666777766665555566654 467788899999
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH
Q 005802 435 DMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM 511 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 511 (676)
-.|...|+.++|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+..+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 99999999999999999876433 458999999999999999999998877662 11122223334556888999999
Q ss_pred HHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCC----cHHHHHHHHHHHHHhCCHhHHH
Q 005802 512 GEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-----TEE----DAVILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 512 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~~l~~~~~~~~~~~~a~ 581 (676)
|.++|.+.. ++.|+ +..++-+.-.....+.+.+|..+|+... ..+ -..+++.|+-+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999886 77777 7788888888888999999999998776 111 3346788888999999999999
Q ss_pred HHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 582 EAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 582 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..+++++.+.|.++.+|..++-+|...|+++.|.+.+.+.....+
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999988875444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-10 Score=105.86 Aligned_cols=317 Identities=13% Similarity=0.095 Sum_probs=181.8
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhH-HHHHHHHHHcCChHHHHHHH
Q 005802 301 VDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVW-TALFSGYVKAQNCEALFDLL 379 (676)
Q Consensus 301 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~ 379 (676)
...+.+.|..+.|+..|......-+..|.+.+....-..+.+.+..+...+...+...- --+..++....+.++++.-.
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444444444444433333333333333333322111110 11223344444555555555
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 005802 380 SEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGV--QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD 457 (676)
Q Consensus 380 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 457 (676)
... ...|++-+...-+....+.-...++++|..+|+.+.+... -.|..+|+.++-.--.+.++.---.....+.+--
T Consensus 251 e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR 329 (559)
T KOG1155|consen 251 ERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYR 329 (559)
T ss_pred HHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCC
Confidence 554 4444444444444444444466677777777777776531 1234455544433322222222222222333334
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHH
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACM 535 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 535 (676)
+.|...+.+-|.-.++.+.|...|++..+. .|. ...|+.+..-|....+...|.+-++... .+.|. -..|-.|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWYGL 404 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWYGL 404 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHhhh
Confidence 455566666666777777777777777763 344 3455556666777777777777777776 34443 6677777
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
..+|.-.+...-|+-+|+++. .+.|+..|.+|+.+|.+.++.++|+..|+++......+..++..|+++|.+.++.++
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 777777777777777777776 444677777777777777777777777777777766666777777777777777777
Q ss_pred HHHHHHHHHh
Q 005802 614 MGRIRKQMRG 623 (676)
Q Consensus 614 A~~~~~~~~~ 623 (676)
|...+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 7777766654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-09 Score=99.85 Aligned_cols=347 Identities=15% Similarity=0.076 Sum_probs=213.6
Q ss_pred HHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeH-HHHHHHHHhcCChhHHHHH
Q 005802 168 DMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSW-NTLISGYVQNGDAEEGLKL 246 (676)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~ 246 (676)
..+-+.|....|...|..... .-+..|.+-+....-..+.+.+..+....+ ..+...- -.+..++-...+.++++.-
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~-~~P~~W~AWleL~~lit~~e~~~~l~~~l~-~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVN-RYPWFWSAWLELSELITDIEILSILVVGLP-SDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHh-cCCcchHHHHHHHHhhchHHHHHHHHhcCc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888877765443 123445554444444455555544443333 1111111 1233455566678888888
Q ss_pred HHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 005802 247 FVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGL--ISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRN 324 (676)
Q Consensus 247 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 324 (676)
.......|++.+...-+....+.....|+++|+.+|+++.+..+ -.|..+|+.++-.-..+....---...-.+.+--
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR 329 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYR 329 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCC
Confidence 88888888855555444445555678899999999999998853 2366677766543332222222122222233334
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH
Q 005802 325 SFSISSMIVGYSLQGNMEEARRHFDSLTEKN---VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGA 401 (676)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 401 (676)
+.|.-.+.+-|...++.++|...|++..+-| ...|+.+.+-|....+...|+.-++..+ .-.+-|-..|-.+-++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv--di~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV--DINPRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH--hcCchhHHHHhhhhHH
Confidence 5566666777777888888888888776533 4567778888888888888888888752 2234466677777777
Q ss_pred HHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHH
Q 005802 402 CALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAI 478 (676)
Q Consensus 402 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 478 (676)
|.-.+...-|.-.+++..... |.|..++.+|.++|.+.++.++|.+.|..... .+...+..|.+.|-+.++..+|.
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 777777777777777777654 56677777777777777777777777776552 23356777777777777777777
Q ss_pred HHHHHHHH----CCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 479 LLFEEMLE----KGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 479 ~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
+.|++.++ .|..-+ ......|..-+.+.+++++|..+....
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 77666554 222222 111222334455666666666655544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-13 Score=128.65 Aligned_cols=227 Identities=15% Similarity=0.160 Sum_probs=106.2
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcC
Q 005802 397 ILLGACALQAALHPGKEIHAYILRMG-VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHG 472 (676)
Q Consensus 397 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 472 (676)
.+...+...|++++|..++....... .+.+...+..+.......++++.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44667788999999999996655444 3556666777778888899999999999998744 44567777777 7899
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFM 552 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 552 (676)
++++|.+++++..+. .++...+..++..+...++++++..+++.+.......++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 356677778888899999999999999998754344567888999999999999999999999
Q ss_pred HhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 553 KSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 553 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+++. .|.++.....+++.+...|+.+++..+++...+..|+++..+..++.+|...|+.++|...+++..+..+
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9998 4556888999999999999999999999999998899999999999999999999999999999987555
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.3e-10 Score=111.61 Aligned_cols=146 Identities=13% Similarity=0.043 Sum_probs=107.7
Q ss_pred HHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH---HHHHHHhhccCcHHHHHHHH
Q 005802 443 MTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTF---VAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 443 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~ 516 (676)
.+...+.+...++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3444555555553 36778888888999999999999999999885 3444321 11222234457888899999
Q ss_pred HHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh--CC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 517 NSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKS--IP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 517 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+...+...-.|+.....++...+.+.|++++|.+.|+. .. ..|++..+..+...+.+.|+.++|.+++++....
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88875432222226677899999999999999999994 33 6788888889999999999999999999998655
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-09 Score=100.14 Aligned_cols=287 Identities=16% Similarity=0.109 Sum_probs=185.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 237 NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
.|+|..|.++..+-.+.+-.| ...|.....+.-..|+.+.+..++.++.+....++..+.-.........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~-- 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR-- 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH--
Confidence 577888888887776665443 34455566667778888888888877777644455555555566666666666665
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhcc---CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh
Q 005802 317 LLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSL---TEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
.-++++ ...++........+|.+.|++.....++.+| .+.+.-.++.
T Consensus 174 -----------------------------~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L-~ka~~l~~~e 223 (400)
T COG3071 174 -----------------------------ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL-RKAGLLSDEE 223 (400)
T ss_pred -----------------------------HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH-HHccCCChHH
Confidence 333333 3346667777888888888888888888888 6665544432
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHH
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAH 470 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 470 (676)
.- .+ ...++..+++-....+..+.-...|++.+ +.++..-.+++.-+.+
T Consensus 224 ~~-----------------~l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 224 AA-----------------RL-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HH-----------------HH-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 11 10 11233334443333444444445666665 3356666677777788
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005802 471 HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIE 550 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 550 (676)
.|+.++|.++.++..+++..|+ . ...-.+.+-++.+.-++..+.....++-.| ..+.+|...|.+.+.+.+|.+
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888888877776665 1 122245666777777777776665544444 666677777777777777777
Q ss_pred HHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 551 FMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 551 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
.|+... ..|+..++.-+..++...|+.+.|.+..+++..+
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777665 6677777777777777777777777777776644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-10 Score=101.97 Aligned_cols=301 Identities=11% Similarity=0.120 Sum_probs=197.3
Q ss_pred CCHHHHHHHHhccCCCCchhH---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh--HHHHHHHHHHhhcChhHHHH
Q 005802 339 GNMEEARRHFDSLTEKNVVVW---TALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL--ILVILLGACALQAALHPGKE 413 (676)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~ 413 (676)
++.++|.++|-+|.+.|+.++ -+|.+.|.+.|..+.|+.+-+.++...+...+.. ....|..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455555566666655444433 3455566666666666666666533333222221 23334455666677777777
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc--------hHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 414 IHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLV--------LYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
+|..+.+.+ ..-......|+..|-...+|++|.++-.++.+.+.. .|.-|...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 776666543 223344556777788888888887776655433222 34445555566788899999999888
Q ss_pred HCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcH
Q 005802 486 EKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDA 561 (676)
Q Consensus 486 ~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 561 (676)
+.+ |+ ...-..+.+.....|+++.|.+.++...+. .|+ ..+...|..+|...|+.++...++.++. ..+..
T Consensus 208 qa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 208 QAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred hhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 754 33 333334557788899999999999998765 344 6778888999999999999999988876 55555
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH--HhcCChhHHHHHHHHHHhCCCcccCceeEEEEcC
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY--AAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEH 639 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (676)
.....+...-....-.+.|...+.+-+...|+--..|..+..-. ...|.+.+....++.|....++..|.+....++-
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF 362 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGF 362 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCC
Confidence 55555555544555566777777777777776444443333222 2356789999999999998888888888888877
Q ss_pred EEEEEE
Q 005802 640 EIHIFT 645 (676)
Q Consensus 640 ~~~~~~ 645 (676)
..+.+.
T Consensus 363 ~a~~l~ 368 (389)
T COG2956 363 TAHTLY 368 (389)
T ss_pred cceeee
Confidence 766554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-09 Score=102.66 Aligned_cols=219 Identities=10% Similarity=0.005 Sum_probs=172.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 005802 366 YVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTY 445 (676)
Q Consensus 366 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (676)
+.-.|+..+|..-|+..+....-.++. |..+...|....+.++....|+...+.+ +.++.+|..-..++.-.++++.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 344688889999998874333222222 6667778889999999999999999877 6677888888888889999999
Q ss_pred HHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhh
Q 005802 446 AEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 446 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
|..-|++.+.- ++..|-.+..+..+.+++++++..|++.+.+ ++--+..|+.....+...++++.|.+.|+....
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 99999988744 5556777777777889999999999999886 455578899999999999999999999998863
Q ss_pred cCCCCC---------HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 523 YKISPE---------TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 523 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
+.|+ +.+...++..-.+ +++..|+.+++++. .+.....+.++...-.+.|+.++|+++|++...+.
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3443 2222233333233 89999999999988 44466788999999999999999999999998774
Q ss_pred C
Q 005802 592 G 592 (676)
Q Consensus 592 p 592 (676)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.8e-10 Score=101.47 Aligned_cols=277 Identities=14% Similarity=0.142 Sum_probs=200.7
Q ss_pred cCCHHHHHHHHhccCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHH
Q 005802 338 QGNMEEARRHFDSLTEK---NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEI 414 (676)
Q Consensus 338 ~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 414 (676)
.|++.+|+++..+..+. ....|..-..+--+.|+.+.+-.++.+. .+..-.++.....+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~ea-ae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEA-AELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 35666666776665442 2234444455666677788888877776 4443344555555566666777777777777
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-----------cchHHHHHHHHHHcCChhHHHHHHHH
Q 005802 415 HAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD-----------LVLYNVMIACYAHHGHEEKAILLFEE 483 (676)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~ 483 (676)
...+.+.+ +-++........+|.+.|++.....++.++.+.. ..+|+.+++-....+..+.-...|++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777765 5556677777888888888888888888776542 23677777777777777776667776
Q ss_pred HHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcH
Q 005802 484 MLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDA 561 (676)
Q Consensus 484 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 561 (676)
.-.. .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+. +..-...+-++.+.-++..++.. .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6553 4556667777888899999999999999998876 666662 12233445666666555555544 45566
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..+.+|+..|.+++.+.+|...++.+++..|+ ...|..+++++.+.|+..+|.+..++..-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88999999999999999999999999988875 68899999999999999999999988763
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-10 Score=108.84 Aligned_cols=197 Identities=16% Similarity=0.104 Sum_probs=160.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 503 (676)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566777888888888888888887652 245577778888999999999999999988753 33456677778888
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 581 (676)
...|++++|...++..............+..+...+...|++++|.+.+++.. .+.+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999987541222235677788899999999999999998877 3445667888888999999999999
Q ss_pred HHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 582 EAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 582 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
..++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888889999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-08 Score=99.79 Aligned_cols=519 Identities=14% Similarity=0.132 Sum_probs=239.0
Q ss_pred hCCCchHHHHHhccCCC-CCc-chHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHh
Q 005802 37 KHNLLRESRKLFDEMPE-RNV-FSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEM 114 (676)
Q Consensus 37 ~~g~~~~a~~~~~~~~~-~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 114 (676)
..|+++.|...++.... |+. ..|..+.......|++--|.++|.. |.-.++.+... +..++-++.
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa------------i~dvak~r~lh-d~~eiadea 522 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA------------IGDVAKARFLH-DILEIADEA 522 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH------------HHHHHHHHHHH-HHHHHHHHH
Confidence 44666666666666543 444 3566666666666666666655532 11112222222 333333333
Q ss_pred HhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhh
Q 005802 115 QSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLIS 194 (676)
Q Consensus 115 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 194 (676)
...-.|--.+-+-...++. .-.+++..|+.+|-+ .......|..|-...+|++|+.+.+....+.-...
T Consensus 523 s~~~ggdgt~fykvra~la--il~kkfk~ae~ifle---------qn~te~aigmy~~lhkwde~i~lae~~~~p~~ekl 591 (1636)
T KOG3616|consen 523 SIEIGGDGTDFYKVRAMLA--ILEKKFKEAEMIFLE---------QNATEEAIGMYQELHKWDEAIALAEAKGHPALEKL 591 (1636)
T ss_pred hHhhCCCCchHHHHHHHHH--HHHhhhhHHHHHHHh---------cccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHH
Confidence 2110111111111112222 222345555555422 11234456667777788888877765544333445
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCC
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRN 274 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 274 (676)
..+.+.++...|+-++|-++-..-+ .+ -+.|..|.+.|.+-.|......=.. +..|......+..++.+..-
T Consensus 592 k~sy~q~l~dt~qd~ka~elk~sdg-----d~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~el 663 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELKESDG-----DG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGEL 663 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhccccC-----cc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHH
Confidence 5677777777888777766532222 12 3456778888888777655432111 23455555555555555555
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhH-HHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 275 VKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSI-SSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
++.|-.+|+++.. +..-+.+|.+..-+.+|.++-+..-...+++. ......+...|+++.|+.-|-+...
T Consensus 664 ydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~ 734 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC 734 (1636)
T ss_pred HHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh
Confidence 5555555544321 11122333333333333333222211111111 1111223333444444444332211
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHH
Q 005802 354 KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTL 433 (676)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (676)
.--.+.+-....+|.+|+.+++.+ +... .-...|..+...|+..|+++.|+++|-+. ..++--
T Consensus 735 -----~~kaieaai~akew~kai~ildni-qdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~da 797 (1636)
T KOG3616|consen 735 -----LIKAIEAAIGAKEWKKAISILDNI-QDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDA 797 (1636)
T ss_pred -----HHHHHHHHhhhhhhhhhHhHHHHh-hhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHH
Confidence 011223333444555555555443 2221 12223444444555555555555544321 123334
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC--CcchHHHHH--------------------------HHHHHcCChhHHHHHHHHHH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIER--DLVLYNVMI--------------------------ACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~--------------------------~~~~~~~~~~~A~~~~~~m~ 485 (676)
|.+|.+.|++++|.++-.+...| ..+.|-+-. .+|-++|..+..+.+.++-
T Consensus 798 i~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~- 876 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH- 876 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh-
Confidence 45555555555555555444433 222333333 3444444444444444332
Q ss_pred HCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----
Q 005802 486 EKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEE---- 559 (676)
Q Consensus 486 ~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 559 (676)
.|+ ..|...+..-+...|+...|...|-+.. -|.+-+.+|...+.|++|..+-+.-....
T Consensus 877 ----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 877 ----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred ----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 122 2334444555555666666665554331 14445566666666666666654433000
Q ss_pred cHHHHH------HHHHHHHHhC-------------CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 560 DAVILG------SFLNVCRLNR-------------NAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 560 ~~~~~~------~l~~~~~~~~-------------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
-...|. ..+..+.++| .++-|..+.+-+.+ ..-+..+..++.-+...|++++|.+.+-+
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyve 1020 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVE 1020 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHH
Confidence 011111 1111222333 33333333333322 23356788888889999999999988887
Q ss_pred HHhCCCcccC
Q 005802 621 MRGMKGNRFA 630 (676)
Q Consensus 621 ~~~~~~~~~~ 630 (676)
..+.+.-...
T Consensus 1021 aiklntynit 1030 (1636)
T KOG3616|consen 1021 AIKLNTYNIT 1030 (1636)
T ss_pred Hhhcccccch
Confidence 7776654433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-08 Score=88.56 Aligned_cols=448 Identities=13% Similarity=0.063 Sum_probs=252.3
Q ss_pred HHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhc
Q 005802 94 LCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKC 173 (676)
Q Consensus 94 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (676)
+.-+....++. .|+.+++--.. .+-.-...+-.-+...+...|++++|..++..+.+. -.+++..+..|..++.-.
T Consensus 29 Ledfls~rDyt-GAislLefk~~--~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYT-GAISLLEFKLN--LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccch-hHHHHHHHhhc--cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHH
Confidence 44455667888 88888876543 111111122223344557899999999999988774 566677788888888889
Q ss_pred cchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 174 RCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGEN 253 (676)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 253 (676)
|.+.+|..+.++.++ ++.....+.....+.|+-++-..+-..+.. . ...--+|....--.-.+++|+++|.+....
T Consensus 105 g~Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD-~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-T-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-h-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999888655 344445556666777887777766666652 1 111222333333344689999999998874
Q ss_pred CCCCcHhHHHHHHH-HHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCChHHHH--HHHHhcCCCCchhH
Q 005802 254 GVRWNEHTFASALS-ACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCK--CENMNYAE--SMLLLKGVRNSFSI 328 (676)
Q Consensus 254 g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~--~~~~~~~~~~~~~~ 328 (676)
+ |+-...+.-+. +|.+..-++-+.+++.--.+. ++.++...|....-..+ .|+..+.+ ++.+.+.+.
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----- 252 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----- 252 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----
Confidence 3 44444444443 455677777777777766654 22333334433333333 23332222 111111110
Q ss_pred HHHHHHHHhc-----CCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHH
Q 005802 329 SSMIVGYSLQ-----GNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACA 403 (676)
Q Consensus 329 ~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 403 (676)
-..+.-+++. .+-+.|.+++-.+.+.-+..--.|+--|.+.+++.+|..+.+++ ....|-......+..+
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~a-- 327 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFA-- 327 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHH--
Confidence 1112222222 23455555555554433334444555677788888888877764 2333333332222221
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcCChhHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER-----DLVLYNVMIACYAHHGHEEKAI 478 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~ 478 (676)
..|+ -......+.-|.+.|+-+-.. ...--.++...+.-..++++.+
T Consensus 328 alGQ----------------------------e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 328 ALGQ----------------------------ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred Hhhh----------------------------hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 1111 111111223333333332211 1223344455555556677777
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHhCCC
Q 005802 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA-CMIDLYGRANQLEKAIEFMKSIPT 557 (676)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 557 (676)
-.++.+..--..-|...| .+.++.+..|.+.+|.++|-++... .+ .|..+|. .|.++|.+.+.++-|++++-++..
T Consensus 380 ~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 380 TYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred HHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 777666654222233333 4667777888888888888777422 22 2344443 566788888888888888877764
Q ss_pred CCcHHHHHHH-HHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 558 EEDAVILGSF-LNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 558 ~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+.+..++..+ .+-|.+.+.+=-|-+.|..+..++|.
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 4444444433 34688888888888888887777775
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-07 Score=90.77 Aligned_cols=521 Identities=11% Similarity=0.079 Sum_probs=266.1
Q ss_pred ccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHH
Q 005802 88 VTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLI 167 (676)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (676)
..|-..+..+..+|+.. .....|+....+ -.+.--...|...++.....+-++.+..+++..++.. +..-...|
T Consensus 103 RIwl~Ylq~l~~Q~~iT-~tR~tfdrALra-LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyi 176 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLIT-RTRRTFDRALRA-LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYI 176 (835)
T ss_pred HHHHHHHHHHHhcchHH-HHHHHHHHHHHh-CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHH
Confidence 34555555566666666 666666665542 2222233355666666666666666666666666552 12245556
Q ss_pred HHhhhccchHHHHHhhhhcCC---------CCchhhHHHHHHHHHhcCCh---hHHHHHHhhCCC-CCC--eeeHHHHHH
Q 005802 168 DMYSKCRCYEEACRVFEGCTE---------EVNLISKNAMVAACCREGEM---EMALKTFWRQPE-LND--AVSWNTLIS 232 (676)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~--~~~~~~li~ 232 (676)
..+++.+++++|.+.+..... +.+...|.-+.+..++.-+. -....+++.+.. -+| ...|.+|.+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 666666666666666655443 12222333333333332111 111222222221 111 123555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHh--cCC
Q 005802 233 GYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVL-KNGLISNPFVSSGIVDVYCK--CEN 309 (676)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--~g~ 309 (676)
.|++.|.++.|.++|++.... ..+..-|..+.++|+.-..-..+..+= ... +.+-.-+.......+..+-. .+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 555555555555555554442 123344444444443322111111100 000 00100011111100000000 000
Q ss_pred hHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC---C----C--chhHHHHHHHHHHcCChHHHHHHHH
Q 005802 310 MNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE---K----N--VVVWTALFSGYVKAQNCEALFDLLS 380 (676)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~----~--~~~~~~li~~~~~~~~~~~a~~~~~ 380 (676)
.-..-.++-+-...++..|..-+ -+..|+..+-...+.+... | + ...|..+...|-..|+.+.|..+|+
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 00000000000011122222221 2234555555555555432 1 1 2357888888999999999999998
Q ss_pred HHHHcCCCCCCH----hHHHHHHHHHHhhcChhHHHHHHHHHHHcC-----------CCC------ChhHHHHHHHHHHh
Q 005802 381 EFVTKEGVVTDA----LILVILLGACALQAALHPGKEIHAYILRMG-----------VQM------DKKLISTLVDMYSK 439 (676)
Q Consensus 381 ~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~ 439 (676)
+. ..-.. +.. .+|......-.+..+++.|..+++.+.-.. .++ +..++...++....
T Consensus 412 ka-~~V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 412 KA-TKVPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred Hh-hcCCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 85 22221 221 233333333445667777777776654321 111 22344555666667
Q ss_pred cCCHHHHHHHHhhcCCCCcchHHHH---HHHHHHcCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHhh---ccCcHHHH
Q 005802 440 CGNMTYAEIIFQNFIERDLVLYNVM---IACYAHHGHEEKAILLFEEMLEKGIKPDA-VTFVAILSAFR---HCGSVEMG 512 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~---~~g~~~~a 512 (676)
.|-++....+++++..--+.|=..+ ...+-.+.-++++.+++++-+..=-.|+. ..|+..+.-+. ....++.|
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 7888888888888874432222222 22334566788999888876664334443 24555554433 23578999
Q ss_pred HHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHH----HHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 513 EKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAV----ILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
..+|++..+ +.+|. ...|-.....=-+.|-...|+++++++...-... .|+.++.-....=-...-..+|++
T Consensus 570 RdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 570 RDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 999999976 77666 3334444444456688899999999987333333 444444422222234566788999
Q ss_pred HHcccCCCCc--cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 587 LLRLEGNNKA--RYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 587 ~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+++.-|++.. .....+..-.+.|..+.|+.++..-.+
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 9988777533 455667777889999999999876544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-07 Score=95.18 Aligned_cols=497 Identities=14% Similarity=0.126 Sum_probs=292.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhh-----HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhh
Q 005802 90 YNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFT-----VTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVS 164 (676)
Q Consensus 90 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~-----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (676)
|..+...|.++|-.. .|++.|.+... +.-.... -.-++ .+...-.++...+.++.|....+..+..+..
T Consensus 609 ra~IAqLCEKAGL~q-raLehytDl~D----IKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~V 682 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQ-RALEHYTDLYD----IKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVV 682 (1666)
T ss_pred HHHHHHHHHhcchHH-HHHHhcccHHH----HHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 556666777777777 77776666543 1111110 01111 2223335667777777777776666666666
Q ss_pred HHHHHhhhccchHHHHHhhhhcCC--------------CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC----------
Q 005802 165 SLIDMYSKCRCYEEACRVFEGCTE--------------EVNLISKNAMVAACCREGEMEMALKTFWRQPE---------- 220 (676)
Q Consensus 165 ~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 220 (676)
.+..-|...=..+.-+++|+.... ..|+...-..|.+.|+.|++.+.+++.++-..
T Consensus 683 Qvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 683 QVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 666666666666666666665443 34555556677888888887777776644321
Q ss_pred --------CC-----CeeeH-HH------------HHHHHHhcCChhHHHHHHHHHHh---------------CCCCCcH
Q 005802 221 --------LN-----DAVSW-NT------------LISGYVQNGDAEEGLKLFVRMGE---------------NGVRWNE 259 (676)
Q Consensus 221 --------~~-----~~~~~-~~------------li~~~~~~g~~~~a~~~~~~m~~---------------~g~~p~~ 259 (676)
.| |...| +. .|..|++.=++...-.+.-.+.+ .|.-|
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~-- 840 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP-- 840 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC--
Confidence 11 11111 11 23333333222222111111111 11111
Q ss_pred hHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH-H--------HHHhcCC-CCc----
Q 005802 260 HTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAE-S--------MLLLKGV-RNS---- 325 (676)
Q Consensus 260 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~--------~~~~~~~-~~~---- 325 (676)
...|..-+.+.+++..-...++..+..|. .|+.++++|...|..+++-.+-. + ...+..+ .|+
T Consensus 841 --~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 841 --VDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred --hHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEE
Confidence 22344556778888888888888888874 67888888888887765533221 0 0011110 111
Q ss_pred -------------------hhHHHHHHHHHhcCCHHHHHHHH-----------hccC-----C-CCchhHHHHHHHHHHc
Q 005802 326 -------------------FSISSMIVGYSLQGNMEEARRHF-----------DSLT-----E-KNVVVWTALFSGYVKA 369 (676)
Q Consensus 326 -------------------~~~~~li~~~~~~~~~~~a~~~~-----------~~~~-----~-~~~~~~~~li~~~~~~ 369 (676)
..|-...+-+.+..+.+-=.+++ ++.. + .|+..-+.-+.++...
T Consensus 918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta 997 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA 997 (1666)
T ss_pred EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc
Confidence 11222333333344433222222 1111 1 3555667778888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcC-----------------------CCCC
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMG-----------------------VQMD 426 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~ 426 (676)
+-..+-++++++.+.....-........++-.-+-..+.....+..+++.... +..+
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n 1077 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMN 1077 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhccc
Confidence 88999999999884443332222333333322222223333333333332221 1112
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHC 506 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 506 (676)
......|++ .-+.+++|.+.-++..+ +..|..+..+-.+.|.+.+|++-|-+. -|+..|..++....+.
T Consensus 1078 ~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1078 VSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred HHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence 222222221 12344444444444443 347999999999999999999877442 3678899999999999
Q ss_pred CcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
|.+++-.+++...+++ .-.|...+ .|+-+|++.++..+-.+++ ..|+......++.-|...|.++.|.-+|..
T Consensus 1147 ~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred CcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 9999999999988776 66666554 7899999999999887776 368888899999999999999999988874
Q ss_pred HHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 587 LLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 587 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+-|..|+..+...|.+..|...-+++..
T Consensus 1220 --------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1220 --------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 35688999999999999888876665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-08 Score=96.35 Aligned_cols=447 Identities=13% Similarity=0.111 Sum_probs=231.8
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHH--HHHHHH--
Q 005802 128 VTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNA--MVAACC-- 203 (676)
Q Consensus 128 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--l~~~~~-- 203 (676)
..+=++-+...+++++|.+....+...+ +-|...+..-+-++++.+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHH
Confidence 3344556667778888888888888775 33334566667778888888888866654321 122222 244554
Q ss_pred hcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHH
Q 005802 204 REGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 204 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
+.+..++|+..++-.. .-+..+...-...+-+.|++++|+++|+.+.+.+..- +...-..++.+... .. -
T Consensus 91 rlnk~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~-~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQ-V 161 (652)
T ss_pred HcccHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hh-H
Confidence 4677777777777433 3333334444455667777888888887776655421 11111111111100 00 0
Q ss_pred HHHHHhCCCCchhHHHHHH---HHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHh-ccCCCC---
Q 005802 283 SWVLKNGLISNPFVSSGIV---DVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFD-SLTEKN--- 355 (676)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~--- 355 (676)
+.+......| ..+|..+. -.+...|++.+|++++.... ++.. .+.+.|
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNE 216 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccch
Confidence 0111111122 11222222 23344555555554443321 0000 001110
Q ss_pred --c-----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH---HHhhcChhH--------------H
Q 005802 356 --V-----VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGA---CALQAALHP--------------G 411 (676)
Q Consensus 356 --~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~---~~~~~~~~~--------------a 411 (676)
+ ..--.|.-.+...|+..+|..+|...+.. .++|........+. .....++-. +
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~ 294 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLA 294 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhH
Confidence 0 01122334455566777777766665222 23333222211111 111111110 0
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-cchHHHHHHHHH--HcCChhHHHHHHHHHHHCC
Q 005802 412 KEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD-LVLYNVMIACYA--HHGHEEKAILLFEEMLEKG 488 (676)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~g 488 (676)
......+.... ......-+.++.+| .+..+.+.++-...+... ...+..++..+. +......+.+++...-+..
T Consensus 295 ~~~l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 295 EFLLSKLSKKQ-KQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 11111111100 11111122333333 345566666666665432 334455554433 2335778888888777643
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHH--------HchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----
Q 005802 489 IKPDAVTFVAILSAFRHCGSVEMGEKYFN--------SMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---- 556 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 556 (676)
..-........++.....|+++.|.+++. .+.+- +.. +.+...++..+.+.++.+-|..++.+..
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 22223444555666788999999999998 44322 333 4556677888888887666655555544
Q ss_pred -CCCcHH----HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 557 -TEEDAV----ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 557 -~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
..+... .|..+...-.++|+-++|..+++++.+.+|++......++.+|.+. +.+.|..+-+.+
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 122222 3333444445779999999999999999999999999999998865 456666655443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-12 Score=83.38 Aligned_cols=50 Identities=40% Similarity=0.694 Sum_probs=46.6
Q ss_pred CCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC
Q 005802 222 NDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG 271 (676)
Q Consensus 222 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 271 (676)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-08 Score=92.46 Aligned_cols=189 Identities=14% Similarity=0.082 Sum_probs=138.1
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--C-CCcchHHHHHHHHHHcCChhHHHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--E-RDLVLYNVMIACYAHHGHEEKAILL 480 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~ 480 (676)
..++++.|..+-++.++.+ +.+...+-.-..++...|+.+.|.-.|+... . -+..+|.-|+.+|...|++.+|.-.
T Consensus 312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 4455555665555555543 2333344444566777888888888887654 3 3677899999999999999999887
Q ss_pred HHHHHHCCCCCCHhHHHHHH-HHhh-ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 481 FEEMLEKGIKPDAVTFVAIL-SAFR-HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
-+..... +..+..+...+. ..|. ...--++|..+++.-. .+.|+ ....+.+...+...|..++++.++++..
T Consensus 391 An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 391 ANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 7665543 344566665552 3333 3344578888888776 66788 7777888889999999999999999887
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
..||....+.|...+...+.+++|...|..++.++|.+..+
T Consensus 467 ~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 467 IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 77888888889999999999999999999999999987543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-09 Score=92.22 Aligned_cols=281 Identities=13% Similarity=0.187 Sum_probs=145.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC-c--hhHHHHHHHHHHhcCChHHH
Q 005802 237 NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLIS-N--PFVSSGIVDVYCKCENMNYA 313 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~a 313 (676)
++++++|+++|-+|.+.. +-+..+-.+|-+.+.+.|.++.|..+++.+.++.--+ + ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888888722 1233445566677778888888888888777652111 1 11223344455555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 005802 314 ESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKN---VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVT 390 (676)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 390 (676)
+ .+|..+.+.+ ......|+..|-...+|++|+++-.+. ...+-.+
T Consensus 127 E-------------------------------~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L-~k~~~q~ 174 (389)
T COG2956 127 E-------------------------------DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL-VKLGGQT 174 (389)
T ss_pred H-------------------------------HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHcCCcc
Confidence 5 5555444421 123344455555555555555555544 2222222
Q ss_pred CH----hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc----hHH
Q 005802 391 DA----LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLV----LYN 462 (676)
Q Consensus 391 ~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~ 462 (676)
.. ..|--+........+.+.|..++.+..+.+ +.....--.+.+.+...|+++.|.+.++.+.+.|.. +..
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 11 112222223333444555555555554433 222333334556666667777777666666654432 445
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 542 (676)
.|..+|.+.|+.++....+.++.+....++ .-..+...-....-.+.|..++.+-..+ +|+...+..+++.....
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhcc
Confidence 566677777777777777777666432232 2233333222333344444444433322 57777776776665432
Q ss_pred ---CCHHHHHHHHHhCC
Q 005802 543 ---NQLEKAIEFMKSIP 556 (676)
Q Consensus 543 ---g~~~~A~~~~~~~~ 556 (676)
|...+.+..+++|.
T Consensus 329 aeeg~~k~sL~~lr~mv 345 (389)
T COG2956 329 AEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccchhhhHHHHHHHH
Confidence 33444555555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-09 Score=108.67 Aligned_cols=231 Identities=18% Similarity=0.250 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHc-----CC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhcC-------CC--
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRM-----GV-QMD-KKLISTLVDMYSKCGNMTYAEIIFQNFI-------ER-- 456 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-- 456 (676)
.+...+...|...|+++.|..+++...+. |. .|. ..+.+.+...|...+++.+|..+|+++. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444555666666666666666555443 10 112 2233346677888888888888877663 11
Q ss_pred --CcchHHHHHHHHHHcCChhHHHHHHHHHHH-----CCC-CCCH-hHHHHHHHHhhccCcHHHHHHHHHHchhhcC--C
Q 005802 457 --DLVLYNVMIACYAHHGHEEKAILLFEEMLE-----KGI-KPDA-VTFVAILSAFRHCGSVEMGEKYFNSMTADYK--I 525 (676)
Q Consensus 457 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 525 (676)
-..+++.|...|.+.|++++|...+++..+ .|. .|.. .-++.+...|...+++++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 134677788889999999888888777553 121 1222 2355566678889999999998887655433 2
Q ss_pred CC---C-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------C--CC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-
Q 005802 526 SP---E-TDHYACMIDLYGRANQLEKAIEFMKSIP-------T--EE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRL- 590 (676)
Q Consensus 526 ~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 590 (676)
.+ + ..+++.|...|.+.|++++|.++++++. . .+ ....++.+...|.+.++++.|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2 5689999999999999999999999887 1 11 2457788888999999999999999988766
Q ss_pred ---cCCC---CccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 591 ---EGNN---KARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 591 ---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.|++ ...|..|+.+|.+.|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4444 44688999999999999999999988764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.2e-10 Score=94.20 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMID 537 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 537 (676)
+...|.-.|...|+...|.+-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++.. .+.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 3455667788888888888888888875 344 5677778888888888888888888887 44666 778888888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 538 LYGRANQLEKAIEFMKSIPTEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
.+|..|++++|...|+++...| ...+|..++.+..+.|+.+.|...+++.++.+|+.+.....++......|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888888899988888887444 455788888888888899999999999998888888888888888888999999
Q ss_pred HHHHHHHHHhCCC
Q 005802 614 MGRIRKQMRGMKG 626 (676)
Q Consensus 614 A~~~~~~~~~~~~ 626 (676)
|..+++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9888888876654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-06 Score=86.48 Aligned_cols=555 Identities=12% Similarity=0.083 Sum_probs=272.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC---------------CCcchHHHHHHHHHhc
Q 005802 5 NLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE---------------RNVFSWNTIISACIKS 69 (676)
Q Consensus 5 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~ll~~~~~~ 69 (676)
.++++++++..|...+++.+..+.-.+..-|+..=..+...++|+.... .|+.+.-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 5788999999999999999998888888888888778888888888753 5677777889999999
Q ss_pred CChHHHHHHhccCC---------------C----C-----CcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCC--
Q 005802 70 HDLKQARSLFDSSP---------------H----K-----DLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRM-- 123 (676)
Q Consensus 70 g~~~~A~~~~~~~~---------------~----~-----~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-- 123 (676)
|.+.+.+++.++-. - | |-..+-.=+-.|.-.++.. .-+++|-+=.. .+-.|
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~-kyIE~yVQkvN--ps~~p~V 814 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQ-KYIEIYVQKVN--PSRTPQV 814 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHH-HHHHHHHhhcC--Ccccchh
Confidence 99998888775432 0 1 1111111111111111222 22222211110 00000
Q ss_pred ---------Chhh-------------HHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHH-HH
Q 005802 124 ---------DEFT-------------VTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEE-AC 180 (676)
Q Consensus 124 ---------~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~ 180 (676)
+... ...+..-+-+..+...-...++.....|.+ |..++++|...|..+++-.+ -+
T Consensus 815 vG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fL 893 (1666)
T KOG0985|consen 815 VGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFL 893 (1666)
T ss_pred hhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhc
Confidence 1111 112222233344455555556666666543 45678888887775543222 11
Q ss_pred H------------------------hhhhcCC-------CCchhhHHHHHHHHHhcCChhHHHHHHhh------------
Q 005802 181 R------------------------VFEGCTE-------EVNLISKNAMVAACCREGEMEMALKTFWR------------ 217 (676)
Q Consensus 181 ~------------------------~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------ 217 (676)
+ .+++-.- ......+....+-+.+..+.+-=.+++.+
T Consensus 894 keN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqV 973 (1666)
T KOG0985|consen 894 KENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQV 973 (1666)
T ss_pred ccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHH
Confidence 1 1110000 00111112222223333333322222211
Q ss_pred ----CCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005802 218 ----QPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW--NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 218 ----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
+++..|+..-+.-+.++...+-+.+-++++++..-.+-.- +...-+.|+-... .-+...+.+..+.+-.-+ .
T Consensus 974 v~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a 1051 (1666)
T KOG0985|consen 974 VQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-A 1051 (1666)
T ss_pred HHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-c
Confidence 1113344445555666666666777777776664321111 1111122222222 223334444444332221 1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 005802 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQN 371 (676)
Q Consensus 292 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 371 (676)
|+ +.......+-+++|..+|+.... +..+.+.|+ -.-+++|.|.++-++..+| ..|..+..+-.+.|.
T Consensus 1052 ~~------ia~iai~~~LyEEAF~ifkkf~~-n~~A~~VLi---e~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1052 PD------IAEIAIENQLYEEAFAIFKKFDM-NVSAIQVLI---ENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGL 1119 (1666)
T ss_pred hh------HHHHHhhhhHHHHHHHHHHHhcc-cHHHHHHHH---HHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCc
Confidence 11 22233334445555555544322 111111121 1234555555555555433 356667777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 005802 372 CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQ 451 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (676)
..+|++-|-+. .|+..|.-++..+.+.|.+++-..++..+.+..-.|... +.|+-+|++.+++.+.++++
T Consensus 1120 v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred hHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-
Confidence 77776666542 355666777777777777777666666666655444433 45666777776666655543
Q ss_pred hcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHH
Q 005802 452 NFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDH 531 (676)
Q Consensus 452 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 531 (676)
..||+.....+.+-|...|.++.|.-+|.. ...|..|...+...|++..|...-++. .+..+
T Consensus 1190 --~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~kt 1251 (1666)
T KOG0985|consen 1190 --AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKT 1251 (1666)
T ss_pred --cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhH
Confidence 244555555555555555555555544432 233444555555555555555444333 13445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
|..+-.+|...+.+.-|.-. -...--...-+..++..|...|-+++-+.+++..+.+...+...|.-|+..|.+
T Consensus 1252 WK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 55555555444443322110 000111223344445555555555555555555555544444455555444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-08 Score=93.58 Aligned_cols=282 Identities=14% Similarity=0.052 Sum_probs=162.0
Q ss_pred CCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHH
Q 005802 255 VRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSM 331 (676)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l 331 (676)
..-+......-..-|....++....++.+.+.+.. ++...++..-|.++...|+...-..+-.++.. ....+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 33344445555556666777777777777776654 34555555666677777766655544444443 244566666
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcCh
Q 005802 332 IVGYSLQGNMEEARRHFDSLTEKN---VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAAL 408 (676)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 408 (676)
.--|...|+..+|++.|.+...-| ...|-.+...|.-.|..+.|+..|... . +-++-....+.-+---|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA-a-rl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA-A-RLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH-H-HhccCCcchHHHHHHHHHHhccH
Confidence 666666677777777777665432 346777777777777777777777653 1 11121222222222234445555
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH--
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLE-- 486 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-- 486 (676)
+.|..++.++.... |.|+.+ .+-+.......+.+.+|..+|+..+.
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv-------------------------------~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLV-------------------------------LHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchh-------------------------------hhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 55555554444332 333444 44444333444455555555544431
Q ss_pred --CC-CC-CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcH
Q 005802 487 --KG-IK-PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDA 561 (676)
Q Consensus 487 --~g-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 561 (676)
.+ -. --..+++.|..+|.+.+.+++|+..+++... -.+.+..++.++.-.|...|+++.|.+.|.+.. ..|+.
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 00 01 1234566677777777777777777777653 223346777777777777777777777777766 66666
Q ss_pred HHHHHHHHHHHH
Q 005802 562 VILGSFLNVCRL 573 (676)
Q Consensus 562 ~~~~~l~~~~~~ 573 (676)
.+...++..+..
T Consensus 523 ~~~~~lL~~aie 534 (611)
T KOG1173|consen 523 IFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-11 Score=79.58 Aligned_cols=50 Identities=38% Similarity=0.697 Sum_probs=44.1
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 005802 456 RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH 505 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 505 (676)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999988864
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-10 Score=99.58 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=162.5
Q ss_pred HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCChhH
Q 005802 400 GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGHEEK 476 (676)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 476 (676)
.+|.+.|.+..|+..++...+. .|-+.+|..|-..|.+..+++.|+.+|.+... | |+....-+.+.+-..++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 3444444444444444443333 34445555666666666666666666665542 2 33333445666777788888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 477 AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|.++|+...+.. ..+......+...|.-.++++-|+.+++++.+- |+ .++..|..+.-+|.-.++++-++.-|+++.
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 888888887742 334556666677788888899999999888765 54 357778888888888888888888888776
Q ss_pred ---CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 557 ---TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 557 ---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..| -..+|-.+.......||+..|.+.|+-++..+|++...++.|+-+-.+.|+.++|..++...+...+
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 223 3458888888889999999999999999999999999999999999999999999999998887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-06 Score=85.01 Aligned_cols=436 Identities=14% Similarity=0.080 Sum_probs=248.2
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHhc
Q 005802 4 LNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERN---VFSWNTIISACIKSHDLKQARSLFD 80 (676)
Q Consensus 4 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~ 80 (676)
+.+...++..+.+.. +++-+..+.....-.+...|+-++|.+....-.+.| .+.|..+--.+-...++++|.++|.
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 445566666677776 556667776666666777788888888877766533 3456555445555567888888887
Q ss_pred cCC--CC-CcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCCh-hhHHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 005802 81 SSP--HK-DLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDE-FTVTSTLNLCVKLLNVGFGRQLHAFMVKTSN 156 (676)
Q Consensus 81 ~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 156 (676)
... +| |...|.-+----++.|++. .....-....+ ..|+. ..|.....+..-.|+...|..+++...+...
T Consensus 100 nAl~~~~dN~qilrDlslLQ~QmRd~~-~~~~tr~~LLq----l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 100 NALKIEKDNLQILRDLSLLQIQMRDYE-GYLETRNQLLQ----LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhh-hHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 654 33 3444554443444566666 66666666655 44433 3566666677777888888888888777642
Q ss_pred -CCCCchhhHH------HHHhhhccchHHHHHhhhhcCCC-Cchh-hHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeee
Q 005802 157 -DASGFAVSSL------IDMYSKCRCYEEACRVFEGCTEE-VNLI-SKNAMVAACCREGEMEMALKTFWRQPE-LNDAVS 226 (676)
Q Consensus 157 -~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 226 (676)
.|+...|... .....+.|.+++|++-+.....+ .+.. .--.-...+.+.+++++|..++..+.. .||...
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 3444433322 23445667777777776654431 1222 223345667777888888888876653 455555
Q ss_pred HHHHHH-HHHhcCChhHHH-HHHHHHHhCCCCCcHhHH-HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 005802 227 WNTLIS-GYVQNGDAEEGL-KLFVRMGENGVRWNEHTF-ASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDV 303 (676)
Q Consensus 227 ~~~li~-~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (676)
|+..+. ++.+--+.-+++ .+|....+. . |....- ..=+.......-.+....++....+.|+++ ++..+...
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SL 329 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSL 329 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHH
Confidence 544433 333222222333 445444331 1 111110 001111111223344555666666666544 23333333
Q ss_pred HHhcCChHHHHHHH---Hh-c--------------CCCCch--hHHHHHHHHHhcCCHHHHHHHHhccCCCCchh---HH
Q 005802 304 YCKCENMNYAESML---LL-K--------------GVRNSF--SISSMIVGYSLQGNMEEARRHFDSLTEKNVVV---WT 360 (676)
Q Consensus 304 ~~~~g~~~~a~~~~---~~-~--------------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 360 (676)
|-.-...+-.+++. .. + ..|... ++--++..+-..|+++.|..+++...+..+.. |.
T Consensus 330 yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~ 409 (700)
T KOG1156|consen 330 YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYL 409 (700)
T ss_pred HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHH
Confidence 32221111111111 11 1 012222 34456777888999999999999888755443 34
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChh--------HHHH
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKK--------LIST 432 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~ 432 (676)
.-...+...|+.+.|..++.+. ..--.||...-.--..-..+.+..++|..+.....+.|. +.. +|-.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea--~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEA--QELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHH--HhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHh
Confidence 4457788889999999999885 333345554444555556678888999988888887764 211 1111
Q ss_pred --HHHHHHhcCCHHHHHHHHhhcC
Q 005802 433 --LVDMYSKCGNMTYAEIIFQNFI 454 (676)
Q Consensus 433 --l~~~~~~~g~~~~A~~~~~~~~ 454 (676)
=..+|.+.|++..|++-|..+.
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHH
Confidence 1356777777777777666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-06 Score=87.68 Aligned_cols=515 Identities=12% Similarity=0.064 Sum_probs=285.1
Q ss_pred CCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhccCCCCCcc-cHHHHHHHHHhcCCChhHHHHHHHHhHh
Q 005802 38 HNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLV-TYNSMLCGYINAEGYEADALKLFIEMQS 116 (676)
Q Consensus 38 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 116 (676)
..++.+|..+|-.-. .-...|..|....++++|..+-+....|... .-++.++++...|+.+ .|-++- .
T Consensus 544 ~kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~-ka~elk----~ 613 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDE-KAAELK----E 613 (1636)
T ss_pred HhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchh-hhhhhc----c
Confidence 346777777763311 1234566777777888887776655544322 2234445555555555 443321 1
Q ss_pred ccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCc-------------hhhHHHHHhhhccchHHHHHhh
Q 005802 117 ADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGF-------------AVSSLIDMYSKCRCYEEACRVF 183 (676)
Q Consensus 117 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~~ 183 (676)
+...-.+.|..|.+.|.+.+|......-.. +..|.. .|...-+.|-+..++++|++.|
T Consensus 614 -------sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~f 684 (1636)
T KOG3616|consen 614 -------SDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECF 684 (1636)
T ss_pred -------ccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHH
Confidence 111112344555555555544432211000 011111 2222233333344445555544
Q ss_pred hhcCC------------CCchhh-HHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 184 EGCTE------------EVNLIS-KNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRM 250 (676)
Q Consensus 184 ~~~~~------------~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 250 (676)
.+-.. +..++. -...-..+...|+++.|..-|-+.. ..--.|.+......|..|+.+++.+
T Consensus 685 kkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------~~~kaieaai~akew~kai~ildni 758 (1636)
T KOG3616|consen 685 KKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------CLIKAIEAAIGAKEWKKAISILDNI 758 (1636)
T ss_pred HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------hHHHHHHHHhhhhhhhhhHhHHHHh
Confidence 32111 001110 0112233445566666666654432 1223355667788899999999988
Q ss_pred HhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC--chhH
Q 005802 251 GENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRN--SFSI 328 (676)
Q Consensus 251 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~ 328 (676)
..... ....|..+...|+..|+++.|+++|.+. ..++.-|.+|.+.|+++.|.++-.....|. ...|
T Consensus 759 qdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y 827 (1636)
T KOG3616|consen 759 QDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY 827 (1636)
T ss_pred hhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence 77543 3456778889999999999999998642 235677899999999999999887766654 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcCh
Q 005802 329 SSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAAL 408 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 408 (676)
-+-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..+++..+- .| ..-..|...+..-+...|++
T Consensus 828 iakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~---h~-d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH---HG-DHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred HHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh---Ch-hhhhHHHHHHHHHHHhccCh
Confidence 6666678899999999999999988874 467888999999999988764 11 11234555666777788999
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCc-----chHHH------HHHHH---------
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDL-----VLYNV------MIACY--------- 468 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~------l~~~~--------- 468 (676)
..|+.-|-+.. -|.+-+++|..++-+++|.++-..--..|. ..|.. -+..+
T Consensus 899 kaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~ 969 (1636)
T KOG3616|consen 899 KAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAA 969 (1636)
T ss_pred hHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHH
Confidence 98887765443 255677888888888888887654332211 11211 11122
Q ss_pred ----HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHH----------
Q 005802 469 ----AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYAC---------- 534 (676)
Q Consensus 469 ----~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~---------- 534 (676)
+..+-++-|..+-+-..+. -.|.. ...+..-+...|++++|-+.+-+..+- ..-..+|..
T Consensus 970 id~a~d~~afd~afdlari~~k~-k~~~v--hlk~a~~ledegk~edaskhyveaikl---ntynitwcqavpsrfd~e~ 1043 (1636)
T KOG3616|consen 970 IDFAADNCAFDFAFDLARIAAKD-KMGEV--HLKLAMFLEDEGKFEDASKHYVEAIKL---NTYNITWCQAVPSRFDAEF 1043 (1636)
T ss_pred hhhhhcccchhhHHHHHHHhhhc-cCccc--hhHHhhhhhhccchhhhhHhhHHHhhc---ccccchhhhcccchhhHHH
Confidence 3333344444333322221 11221 222333456778888886666554322 100111111
Q ss_pred ---------HHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 535 ---------MIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 535 ---------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
-+.++.+.++|..|..+-+.--...-+.++..-.+.....|++.+|+.++-++. .|+ ...+-|
T Consensus 1044 ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran--kp~------i~l~yf 1115 (1636)
T KOG3616|consen 1044 IRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN--KPD------IALNYF 1115 (1636)
T ss_pred HHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC--CCc------hHHHHH
Confidence 123344444444444444332211122334444445566778877777754443 232 223456
Q ss_pred HhcCChhHHHHHHHH
Q 005802 606 AAEGNWAEMGRIRKQ 620 (676)
Q Consensus 606 ~~~g~~~~A~~~~~~ 620 (676)
...+.|.+|+++-+.
T Consensus 1116 ~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1116 IEAELWPDALRIAKD 1130 (1636)
T ss_pred HHhccChHHHHHHHh
Confidence 667777777766543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-07 Score=91.29 Aligned_cols=419 Identities=13% Similarity=0.067 Sum_probs=234.1
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHH-HH
Q 005802 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFA-SA 265 (676)
Q Consensus 189 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~l 265 (676)
..+...|..+.-++.+.|+++.+.+.|++... ......|+.+-..+...|.-..|+.+++.-....-.|+..+-. ..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 45777788888888889999998888887652 2234457888888888888888888888766544335443333 33
Q ss_pred HHHHh-CCCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhcC----C-------hHHHHHHHHhcCC---CCch
Q 005802 266 LSACC-GLRNVKCAKEIHSWVLKN--GL--ISNPFVSSGIVDVYCKCE----N-------MNYAESMLLLKGV---RNSF 326 (676)
Q Consensus 266 l~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~---~~~~ 326 (676)
-..|. +.+.++++..+-.++... +. ...+..+..+.-+|...- . -.++.+.+++..+ .|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 33333 556677777666666552 11 122333444433443211 0 1122222333221 2333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCC----CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHH
Q 005802 327 SISSMIVGYSLQGNMEEARRHFDSLTE----KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGAC 402 (676)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 402 (676)
+.-.+.--|+..++++.|.+...+..+ .+...|..|.-.+...+++.+|+.+.+..+...|....- ...-+..-
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--MDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--chhhhhhh
Confidence 333333344555555555555544332 244455555555555555666655555543332221111 01111111
Q ss_pred HhhcChhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CC-C-cchHHHHHHHHHHcCChh
Q 005802 403 ALQAALHPGKEIHAYILRMG-VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI----ER-D-LVLYNVMIACYAHHGHEE 475 (676)
Q Consensus 403 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~-~~~~~~l~~~~~~~~~~~ 475 (676)
...++.+++......+...= -.+. ....++-....+....+. ++ + ..++..+.......+ .
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~ 625 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--K 625 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--h
Confidence 12333333333332222100 0000 000111111222222221 11 1 223322222221111 1
Q ss_pred HHHHHHHHHHHCCCCC--C------HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHH
Q 005802 476 KAILLFEEMLEKGIKP--D------AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLE 546 (676)
Q Consensus 476 ~A~~~~~~m~~~g~~p--~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 546 (676)
.+..-.. |...-+.| + ...|......+...+..++|...+.+.. ++.|- ...|......+...|+.+
T Consensus 626 ~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 626 SAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhH
Confidence 1110000 11111222 2 1234455566788889999988887775 44454 777877888899999999
Q ss_pred HHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH--HHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 547 KAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE--AEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 547 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+|.+.|.... .+.++....++...+.+.|+-..|.. ++..+.+.+|.++.+|..|+.++.+.|+.++|.+.|....
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9999998887 44466788899999999998888888 9999999999999999999999999999999999999887
Q ss_pred hCC
Q 005802 623 GMK 625 (676)
Q Consensus 623 ~~~ 625 (676)
+..
T Consensus 782 qLe 784 (799)
T KOG4162|consen 782 QLE 784 (799)
T ss_pred hhc
Confidence 653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-08 Score=107.51 Aligned_cols=244 Identities=13% Similarity=0.056 Sum_probs=170.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHH---------hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 371 NCEALFDLLSEFVTKEGVVTD-ALILVILLGACA---------LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
..++|+..|++.+. ..|+ ...+..+..++. ..++.++|...++.+.+.. +.+...+..+...+...
T Consensus 276 ~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 34677777776532 2333 233333333322 2234678888888888765 55677788888888999
Q ss_pred CCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHH
Q 005802 441 GNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 441 g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
|++++|...|++.. .| +...+..+...+...|++++|...+++..+. .|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999876 33 4557888889999999999999999999984 45532 3333444566689999999999
Q ss_pred HHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHH-HHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 517 NSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAV-ILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 517 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+++... ..|+ +..+..+..++...|+.++|...++++. ..|+.. .+..+...+...| +.|...++++.+..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 988653 2354 5567788889999999999999999876 444433 4445555566666 4888888887766333
Q ss_pred CCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 594 NKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 594 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.+.....+..+|.-.|+.+.+... +++.+.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 333334477778888888888777 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=95.56 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSA 502 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 502 (676)
...+..+...+...|++++|.+.+++.. ..+...+..+...+...|++++|.+.+++..+....| ....+..+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 3344445555555555555555555443 1233455556666667777777777777766532222 23345556666
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
+...|++++|...+++.... .|+ ...+..+...+...|++++|...+++.. .++++..+..+...+...|+.+.
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 77777777777777777643 333 5566677777777788888777777665 23455566666667777778888
Q ss_pred HHHHHHHHHccc
Q 005802 580 AGEAEEKLLRLE 591 (676)
Q Consensus 580 a~~~~~~~~~~~ 591 (676)
|..+.+.+....
T Consensus 222 a~~~~~~~~~~~ 233 (234)
T TIGR02521 222 AQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHhhC
Confidence 877777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-06 Score=81.03 Aligned_cols=264 Identities=9% Similarity=-0.006 Sum_probs=184.0
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHH-HHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHH
Q 005802 355 NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALIL-VILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTL 433 (676)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (676)
|+.....+...+...|+.++|+..|++. . -+.|+..+- ....-.+.+.|+.+....+...+.... ..+...+-.-
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~-~--~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSST-L--CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHH-h--hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 5556666777777777777777777764 2 223332221 111112335566666555554444322 1222233333
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 509 (676)
........+++.|+.+-++.+.. ++..|-.-...+...|+.++|.-.|+.... +.| +..+|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 44455667899999988887754 444555555778899999999999998876 555 578999999999999999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHH-HHHh-hcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMI-DLYG-RANQLEKAIEFMKSIP-TEED-AVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
.+|..+-+.... -+..+..+...+. ..+. .----++|.+++++.. ..|+ ......+...|...|.++.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999888776654 2334466655552 3333 2334588999999887 5564 4466777788999999999999999
Q ss_pred HHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 586 KLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 586 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.+...|+ ...+..|++++...+.+.+|.+.|....+.+++
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99998886 578999999999999999999999998876654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-07 Score=89.21 Aligned_cols=358 Identities=15% Similarity=0.105 Sum_probs=156.6
Q ss_pred cCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHHHH
Q 005802 205 EGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAKEI 281 (676)
Q Consensus 205 ~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~ 281 (676)
..++++|++.+..... +.|...|.-+--.-++.|+++...+.-....+ ..|+. ..|..+..+..-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555543321 22334444443344455555555555555544 22333 2334444444555666666666
Q ss_pred HHHHHHhCC-CCchhHHHHHH------HHHHhcCChHHHHHHHHhcCCC--Cchh-HHHHHHHHHhcCCHHHHHHHHhcc
Q 005802 282 HSWVLKNGL-ISNPFVSSGIV------DVYCKCENMNYAESMLLLKGVR--NSFS-ISSMIVGYSLQGNMEEARRHFDSL 351 (676)
Q Consensus 282 ~~~~~~~~~-~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~~ 351 (676)
++...+... .|+...+.... ....+.|..+.|.+.+...... |... -..-...+.+.+++++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 666555432 34444333221 2234455566665555443321 2222 223344566677777777777777
Q ss_pred CCC--CchhHHHH-HHHHHHcCChHHHH-HHHHHHHHcCCCCCCHhHHHHH-HHHHHhhcChhHHHHHHHHHHHcCCCCC
Q 005802 352 TEK--NVVVWTAL-FSGYVKAQNCEALF-DLLSEFVTKEGVVTDALILVIL-LGACALQAALHPGKEIHAYILRMGVQMD 426 (676)
Q Consensus 352 ~~~--~~~~~~~l-i~~~~~~~~~~~a~-~~~~~m~~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 426 (676)
..+ |-..|... ..++.+-.+..++. .+|... ... .|....-..+ +.......-.+....++....+.|+++-
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l-s~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL-SEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 653 33333333 33333333333333 444442 111 1111111110 1111112222333445555666665543
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhh
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFR 504 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~ 504 (676)
... +...|-.-...+ +++ .++..|...-....+....+.-. --+|.. .|+..+...+-
T Consensus 323 f~d---l~SLyk~p~k~~----~le-----------~Lvt~y~~~L~~~~~f~~~D~~~--~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 323 FKD---LRSLYKDPEKVA----FLE-----------KLVTSYQHSLSGTGMFNFLDDGK--QEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred hhh---hHHHHhchhHhH----HHH-----------HHHHHHHhhcccccCCCcccccc--cCCchHHHHHHHHHHHHHH
Confidence 322 222221111100 111 11111111000000000000000 013332 23444555566
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHH
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 581 (676)
..|+++.|..+++... +..|+ +..|-.-.+.+..+|++++|..++++.. ..+|...-.-...-..+.++.++|.
T Consensus 383 ~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence 6666666666666665 44566 5555555666666666666666666665 3344433334444455666666666
Q ss_pred HHHHHHHcc
Q 005802 582 EAEEKLLRL 590 (676)
Q Consensus 582 ~~~~~~~~~ 590 (676)
.++.+..+-
T Consensus 460 ~~~skFTr~ 468 (700)
T KOG1156|consen 460 EVLSKFTRE 468 (700)
T ss_pred HHHHHhhhc
Confidence 666655543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-09 Score=110.23 Aligned_cols=211 Identities=13% Similarity=0.046 Sum_probs=164.1
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCC
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK---------CGNMTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGH 473 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 473 (676)
++.++|..++++..+.. |.+...+..+..+|.. .+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34578888888888764 3345556555555442 3458899999998763 3 56678888888999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHH
Q 005802 474 EEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
+++|...|++..+. .|+ ...+..+..++...|++++|...+++..+ +.|+ ...+..++..+...|++++|+..
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 455 56777888899999999999999999974 4565 33334455567778999999999
Q ss_pred HHhCC--CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 552 MKSIP--TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 552 ~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+++.. .+| ++..+..+..++...|++++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98876 234 45557777888889999999999999998888888888888888888888 4888888887664
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.3e-09 Score=100.04 Aligned_cols=190 Identities=18% Similarity=0.128 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhc
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRH 505 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 505 (676)
+..+...|.+.|+.+.|...|++..+ .+...|+.+...+...|++++|...|++..+ +.|+ ...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 34444445555555555555554431 2344555555555666666666666666555 2343 3444445555555
Q ss_pred cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
.|++++|.+.++...+. .|+..........+...++.++|...+++.....++..|. ........|+...+ ..++
T Consensus 145 ~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~ 219 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLME 219 (296)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHH
Confidence 56666666666655432 3332111111122233455666666654433111111121 11122223333222 1222
Q ss_pred HHH-------cccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 586 KLL-------RLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 586 ~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.+. +..|..+..|..|+.++.+.|++++|...+++..+.++
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 222 22334445566666666666666666666666655443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.7e-07 Score=83.85 Aligned_cols=147 Identities=12% Similarity=0.029 Sum_probs=65.8
Q ss_pred CChhHHHHHHhhCCC-CCCeeeHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHHHHH
Q 005802 206 GEMEMALKTFWRQPE-LNDAVSWNTLI-SGYVQNGDAEEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 206 g~~~~A~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
-.+.+|++++.+... .|.-...|.-+ -+|.+..-++-+.++++-..+. + ||+ ...+.......+.=+-..|+.-.
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~-pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-F-PDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-C-CCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 345566666655432 33333444333 3455666666666766666552 2 332 22222222222222222233333
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHh-----cCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCch
Q 005802 283 SWVLKNGLISNPFVSSGIVDVYCK-----CENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVV 357 (676)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (676)
..+...+-..- ..+.-+++ ...-+.|.+++-.+...-+..-..|+--|.+.+++.+|..+.+.+...++.
T Consensus 243 k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~ 317 (557)
T KOG3785|consen 243 KELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPY 317 (557)
T ss_pred HHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChH
Confidence 33332221110 01111111 122234444443333322333344556678888888888998888654444
Q ss_pred hH
Q 005802 358 VW 359 (676)
Q Consensus 358 ~~ 359 (676)
-|
T Consensus 318 Ey 319 (557)
T KOG3785|consen 318 EY 319 (557)
T ss_pred HH
Confidence 33
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-09 Score=96.64 Aligned_cols=234 Identities=8% Similarity=0.009 Sum_probs=178.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 005802 360 TALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK 439 (676)
Q Consensus 360 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (676)
+.+..+|.+.|.+.+|.+.|+.-+ ...|-+.||..|-.+|.+..++..|..++..-.+. ++.+.....-....+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL---~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL---TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh---hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 456666777777777777776542 22455566777777777777777777777666654 34555555566777778
Q ss_pred cCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHH
Q 005802 440 CGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
.++.++|.++++...+. ++.....+...|.-.++.+-|+..|+++.+.|+. +...|+.+.-+|...++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888877643 5556666777788889999999999999999864 6677888888899999999999988
Q ss_pred HHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 517 NSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 517 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
++.... .-.|+ .++|-.+.......|++.-|.+.|+-.. .+.+...++.|.-.-.+.|+.++|..++..+....|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 888665 44465 6788888888889999999999998887 444667888888888999999999999999999988
Q ss_pred CCCccHH
Q 005802 593 NNKARYV 599 (676)
Q Consensus 593 ~~~~~~~ 599 (676)
+-.....
T Consensus 461 ~m~E~~~ 467 (478)
T KOG1129|consen 461 DMAEVTT 467 (478)
T ss_pred ccccccc
Confidence 7554433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-06 Score=84.72 Aligned_cols=460 Identities=14% Similarity=0.101 Sum_probs=224.1
Q ss_pred CCCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHH--HhcCChHHHHHHh
Q 005802 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISAC--IKSHDLKQARSLF 79 (676)
Q Consensus 2 r~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~ 79 (676)
.++++++|.+.-+++++.+ +-+..++.+-+-++.+.+.+++|..+.+.-........-.+=.+| .+.++.++|...+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 4688999999999999877 777888888888999999999999776655432221111123444 4788999999988
Q ss_pred ccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCC
Q 005802 80 DSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRM-DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDA 158 (676)
Q Consensus 80 ~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (676)
+...+-+..+-..-...+.+.+++. +|+++|+.+.+ .+..- +...-..++.+-. +..+ +.+......|
T Consensus 103 ~~~~~~~~~ll~L~AQvlYrl~~yd-ealdiY~~L~k--n~~dd~d~~~r~nl~a~~a-------~l~~-~~~q~v~~v~ 171 (652)
T KOG2376|consen 103 KGLDRLDDKLLELRAQVLYRLERYD-EALDIYQHLAK--NNSDDQDEERRANLLAVAA-------ALQV-QLLQSVPEVP 171 (652)
T ss_pred hcccccchHHHHHHHHHHHHHhhHH-HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH-------hhhH-HHHHhccCCC
Confidence 8555555556666667778888998 99999999875 22211 1111112221111 1111 1222222223
Q ss_pred CCchhhH---HHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChh--HHHHHHhhCCCCCCeeeHHHHHHH
Q 005802 159 SGFAVSS---LIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEME--MALKTFWRQPELNDAVSWNTLISG 233 (676)
Q Consensus 159 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~li~~ 233 (676)
+ .+|.. ....++..|++.+|+++++....- -...+. .++.. +-..-+ + ..--.|.-+
T Consensus 172 e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~--------~~e~l~-~~d~~eEeie~el-------~-~IrvQlayV 233 (652)
T KOG2376|consen 172 E-DSYELLYNTACILIENGKYNQAIELLEKALRI--------CREKLE-DEDTNEEEIEEEL-------N-PIRVQLAYV 233 (652)
T ss_pred c-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--------HHHhhc-ccccchhhHHHHH-------H-HHHHHHHHH
Confidence 2 22332 334455667777777776643110 000000 00000 000000 0 011223445
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHH---HHhCCCChHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRWNEHTFASALS---ACCGLRNVKC--AKEIHSWVLKNGLISNPFVSSGIVDVYCKCE 308 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 308 (676)
+...|+.++|..+|........ +|........+ +.....++.. ++..++..... ..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~---l~--------------- 294 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFK---LA--------------- 294 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHH---hH---------------
Confidence 6667888888888888877543 44433222222 2211111111 11111111000 00
Q ss_pred ChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCC-chhHHHHHHHHHH--cCChHHHHHHHHHHHHc
Q 005802 309 NMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKN-VVVWTALFSGYVK--AQNCEALFDLLSEFVTK 385 (676)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~ 385 (676)
+.....+..-... ..+........-.+..+.+.++...++... ...+.+++..+.+ ...+..+..++... ..
T Consensus 295 --~~~l~~Ls~~qk~--~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~-~~ 369 (652)
T KOG2376|consen 295 --EFLLSKLSKKQKQ--AIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF-AD 369 (652)
T ss_pred --HHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hc
Confidence 0000000000000 000001111112234444555555554432 1223333333222 22355566666553 22
Q ss_pred CCCCCCHhHHHHHHHHHHhhcChhHHHHHHH--------HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 005802 386 EGVVTDALILVILLGACALQAALHPGKEIHA--------YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-- 455 (676)
Q Consensus 386 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 455 (676)
....-........+......|+++.|..++. .+.+.+. .+.+...+...|.+.++-+.|..++.....
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 1111123334444455556666666666666 3333333 334445566666666665555555554331
Q ss_pred ----CCc----chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 456 ----RDL----VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 456 ----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
+.. .++.-+...-.++|+.++|..+++++.+.. ++|..+...++.+|++. +++.|..+-+.+
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 111 123333334455677777777777777642 45666677777777664 566666655544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-06 Score=90.83 Aligned_cols=344 Identities=13% Similarity=-0.004 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 277 CAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
.|..-+...++.. ..+..+|+.|.-. ...|.+.-+...|-+-.. ....+|..+...+.+..+++.|...|.....
T Consensus 801 ~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 4555555554432 2344555655444 445667767666644332 3556777777788888899999999888876
Q ss_pred C---CchhHHHHHHHHHHcCChHHHHHHHHHH---HHcCCCCCCHhHHHHHHHHHHhhcChhHHHHH----------HHH
Q 005802 354 K---NVVVWTALFSGYVKAQNCEALFDLLSEF---VTKEGVVTDALILVILLGACALQAALHPGKEI----------HAY 417 (676)
Q Consensus 354 ~---~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~----------~~~ 417 (676)
- |...|--.....-..|+.-++..+|..- -...|-.|+...+..........|+.+.-... ++.
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 3 3344443333444557777777777651 12233344444444333334444444332221 222
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCCcchHHHH----HHHHHHcCChhHHHHHHHHHHHCC
Q 005802 418 ILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI-----ERDLVLYNVM----IACYAHHGHEEKAILLFEEMLEKG 488 (676)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~m~~~g 488 (676)
... +.+.....|.+.....-+.+.+..|.+...+.+ +-+...|+.. .+.++..|.++.|..-+...-.
T Consensus 959 yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~-- 1035 (1238)
T KOG1127|consen 959 YFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM-- 1035 (1238)
T ss_pred HHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch--
Confidence 221 445566677777777777777777777766653 2355555542 3344455666655433221110
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHH
Q 005802 489 IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILG 565 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 565 (676)
..+......-+.. .-.|+++++.+.|++...-..-..+ +.....++......+..+.|...+-+.. .+|+....-
T Consensus 1036 -evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll 1113 (1238)
T KOG1127|consen 1036 -EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLL 1113 (1238)
T ss_pred -hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHH
Confidence 1111111111111 3357888888888887643232333 3445555666667777777777665554 556666655
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcc---cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRL---EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
.+...+.-..+......+.++.... .--.-......-.+|...|+-.-..+.+++..--.+.
T Consensus 1114 ~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~ 1178 (1238)
T KOG1127|consen 1114 PLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPG 1178 (1238)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCC
Confidence 5555554444444444444444333 1111222334445667777777777777766554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.9e-06 Score=86.78 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDL 538 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 538 (676)
.|......+.+.+..++|...+.+.... .......|......+...|..++|.+.|.... -+.|+ +.+..++..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 4556667788889999998888777663 23346667777677888999999999998876 67888 8889999999
Q ss_pred HhhcCCHHHHHH--HHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 539 YGRANQLEKAIE--FMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 539 ~~~~g~~~~A~~--~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
+.+.|+..-|.+ ++.++. .+.++..|-.++..+...|+.++|.+.|..+.++.+.+|.
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999998777777 888877 5668999999999999999999999999999999776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.3e-08 Score=91.87 Aligned_cols=227 Identities=11% Similarity=0.000 Sum_probs=153.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH--hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDA--LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAE 447 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 447 (676)
+..+.++.-+.+++......|+. ..+..+...+...|+.+.|...+....+.. +.+...++.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35566666666664433333332 345555566777888888888888777765 456788889999999999999999
Q ss_pred HHHhhcCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC
Q 005802 448 IIFQNFIE--R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK 524 (676)
Q Consensus 448 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 524 (676)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...+++++|...+++... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99998753 3 4567888888899999999999999999884 46544222222234567889999999976543 3
Q ss_pred CCCCHHHHHHHHHHHhhcCCH--HHHHHHHHhCC-C-----CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-C
Q 005802 525 ISPETDHYACMIDLYGRANQL--EKAIEFMKSIP-T-----EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-K 595 (676)
Q Consensus 525 ~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~ 595 (676)
..|+...+ .+...+ .|+. +++.+.+.+.. . +.....|..++..+...|++++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 233333 4444 33343333322 1 1234578899999999999999999999999998754 3
Q ss_pred ccHHHHHHH
Q 005802 596 ARYVQLANV 604 (676)
Q Consensus 596 ~~~~~l~~~ 604 (676)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333334443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-07 Score=92.84 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=53.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhc-----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----C----CC
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADY-----KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-----T----EE 559 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~----~~ 559 (676)
+++.|...|...|++++|.++++...... +..+. -..++.|...|.+.+++.+|.++|.+.. . +.
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 45555555666666666666555543321 11111 3345556666666666666666655543 1 12
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
...++..|..+|...|+++.|+++.+++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23466777777777788877777777766
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.9e-06 Score=85.12 Aligned_cols=430 Identities=15% Similarity=0.102 Sum_probs=202.9
Q ss_pred HHHhhhccchHHHHHhhhhcCC-CCc-hhhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHH-HHHHHHHhc-----
Q 005802 167 IDMYSKCRCYEEACRVFEGCTE-EVN-LISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWN-TLISGYVQN----- 237 (676)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~li~~~~~~----- 237 (676)
...+...|++++|++.+++... -.| ..........+.+.|+.++|...+..+.. .|+...|- .+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3455666777777777765443 122 33344555666666676666666665543 34333333 333333111
Q ss_pred CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 238 GDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNV-KCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 238 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
...+....+|+++...- |.......+.-.+..-..+ ..+...+..+...|+++ +++.|-..|....+.....++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 23455566666665532 4333332222222211112 23444444555555422 344444444433333333322
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccC-CCCch--hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh
Q 005802 317 LLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT-EKNVV--VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
+...... +...+.+.... ..-. .|... ++.-+.+.|...|++++|++++++.+... +..+.
T Consensus 166 ~~~~~~~-----------l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~e 229 (517)
T PF12569_consen 166 VEEYVNS-----------LESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVE 229 (517)
T ss_pred HHHHHHh-----------hcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHH
Confidence 2211100 00000000000 0000 01111 23444555666677777777777652221 22234
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcc----------hH--
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLV----------LY-- 461 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~-- 461 (676)
.|..-.+.+-+.|++.+|...++...... ..|..+-+-.+..+.++|+.++|.+++....+++.. .|
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 45555566667777777777776666654 345555566667777777777777777766544321 12
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC--CCC-------------CCHhHHHHHHHHhhcc---Cc----HHHHHHHHHHc
Q 005802 462 NVMIACYAHHGHEEKAILLFEEMLEK--GIK-------------PDAVTFVAILSAFRHC---GS----VEMGEKYFNSM 519 (676)
Q Consensus 462 ~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~-------------p~~~~~~~ll~~~~~~---g~----~~~a~~~~~~~ 519 (676)
.....+|.+.|++..|++-|....+. .+. .+..+|..+++..-+. .. ...|.+++-.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l 388 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLEL 388 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 22356677778877777766555431 111 1222333333322111 11 22344444444
Q ss_pred hhhcCCCC-----------CHHHHHHHHHHH---hhcCCHHHHHHHH-Hh----------CC----CCCcHHHHHHHHHH
Q 005802 520 TADYKISP-----------ETDHYACMIDLY---GRANQLEKAIEFM-KS----------IP----TEEDAVILGSFLNV 570 (676)
Q Consensus 520 ~~~~~~~p-----------~~~~~~~l~~~~---~~~g~~~~A~~~~-~~----------~~----~~~~~~~~~~l~~~ 570 (676)
........ +..--..+..-. .+...-+++...- ++ .. .+.|+.....-+
T Consensus 389 ~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL-- 466 (517)
T PF12569_consen 389 HDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL-- 466 (517)
T ss_pred hcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHHHH--
Confidence 32200000 000001111100 1111111111110 00 00 112222221111
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
.....-.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 467 ~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 467 LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 12334578999999999999999999999999999999999999887764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-05 Score=78.44 Aligned_cols=153 Identities=11% Similarity=0.017 Sum_probs=90.3
Q ss_pred CCcchHHHHHH--HHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhcc-------CCCCCC
Q 005802 54 RNVFSWNTIIS--ACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSAD-------EHIRMD 124 (676)
Q Consensus 54 ~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-------~~~~p~ 124 (676)
.|..+-.++++ .|.--|+.+.|.+-...+ .+...|..|.+.|.+.++.+ -|.-.+-.|.... ..-.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLD-VAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLD-VAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhcccc-HHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 34555555544 244556666665543332 23445666777676666666 5555555543210 011121
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHh
Q 005802 125 EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCR 204 (676)
Q Consensus 125 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (676)
.+=..+.......|.+++|+.++++.++. ..|=..|-..|.|++|.++.+.-..-.-..+|.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22223333446778888888888887664 33445667788999998888754432234566666666777
Q ss_pred cCChhHHHHHHhhCC
Q 005802 205 EGEMEMALKTFWRQP 219 (676)
Q Consensus 205 ~g~~~~A~~~~~~~~ 219 (676)
.++.+.|++.|++..
T Consensus 871 r~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAG 885 (1416)
T ss_pred hccHHHHHHHHHhcC
Confidence 788888888887765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-07 Score=81.66 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=140.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhcc
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHC 506 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 506 (676)
..|.-.|...|++..|..-+++..+.| ..+|..+...|.+.|..+.|.+-|++..+ +.|+ ....|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 345566777888888888887776443 34677777778888888888888888777 3443 45566666667777
Q ss_pred CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
|.+++|...|++.... ..-|. ..+|..+..+..++|+.+.|.+.|++.. .+..+.....+.......|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 8888888888887765 22233 6778888888888888888888888776 444666777777888888888888888
Q ss_pred HHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+++.....+.........+.+-...|+.+.|.++=..+.+.-
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888877766666777777777777888888877766666543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-08 Score=94.76 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCCh-hHHHHHHHH
Q 005802 544 QLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNW-AEMGRIRKQ 620 (676)
Q Consensus 544 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 620 (676)
.+.+|..+|+++. .++++.+++.+..++...|++++|+.+++++.+.+|.++.+...++-+....|+. +.+.+++..
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3444444444443 2233344444444444445555555555555444555554444444444444444 334444444
Q ss_pred HH
Q 005802 621 MR 622 (676)
Q Consensus 621 ~~ 622 (676)
++
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 44
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.2e-06 Score=84.07 Aligned_cols=221 Identities=13% Similarity=0.079 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC-------------CCcchHHHHHHHHHhcC
Q 005802 4 LNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE-------------RNVFSWNTIISACIKSH 70 (676)
Q Consensus 4 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~~~ll~~~~~~g 70 (676)
|+.+.|.+-...+. +-.+|..+.+.|.+..+++=|.-.+-.|.. ++ ..-..+.-....-|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 56666666555554 234677777777777777777666655542 21 11112222234556
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHH
Q 005802 71 DLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAF 150 (676)
Q Consensus 71 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 150 (676)
.+++|..++++-.+ |..|=+.|-..|.+. +|+++-+.=-+ +. =..||..-..-+-..+|.+.|++.++.
T Consensus 815 MlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~-eA~eiAE~~DR----iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR-----YDLLNKLYQSQGMWS-EAFEIAETKDR----IH-LRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHhcccHH-HHHHHHhhccc----ee-hhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 67777776655332 334444455566666 66666544322 11 122444444444455566666555543
Q ss_pred HHHhcC-------------------CCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHH
Q 005802 151 MVKTSN-------------------DASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMA 211 (676)
Q Consensus 151 ~~~~~~-------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 211 (676)
.-.... ..|...|.=....+-..|+.|.|+.++..... |-++++..|-.|++++|
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------YFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------hhhheeeEeeccCchHH
Confidence 211100 01111222233333445666666666654332 44566667777777777
Q ss_pred HHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 212 LKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMG 251 (676)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (676)
-++-++-+ |..+...+.+.|-..|++.+|+.+|.+..
T Consensus 958 a~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 958 ARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77766644 55666677777777888888888877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-06 Score=74.56 Aligned_cols=382 Identities=11% Similarity=0.034 Sum_probs=198.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHH
Q 005802 227 WNTLISGYVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSG-IVDVY 304 (676)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 304 (676)
+.+.+..+++..++.+|++++....+.. | +....+.+..+|....++..|...++++...- |...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 3344444445555555555555444432 2 33344444444455555555555555444331 22222211 12334
Q ss_pred HhcCChHHHHHHHHhcCCC-CchhHHHHHH--HHHhcCCHHHHHHHHhccCC-CCchhHHHHHHHHHHcCChHHHHHHHH
Q 005802 305 CKCENMNYAESMLLLKGVR-NSFSISSMIV--GYSLQGNMEEARRHFDSLTE-KNVVVWTALFSGYVKAQNCEALFDLLS 380 (676)
Q Consensus 305 ~~~g~~~~a~~~~~~~~~~-~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 380 (676)
.+.+.+..|.++...+... +...-..-+. .....+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 4445555555555555442 1111111111 22345666666677777763 444455555555667777788887777
Q ss_pred HHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChh----------------------------HHHH
Q 005802 381 EFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKK----------------------------LIST 432 (676)
Q Consensus 381 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------~~~~ 432 (676)
..++-.|..|- ..|+..+. ..+.++.+.|.....++++.|+...+. .+|.
T Consensus 169 aAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 169 AALQVSGYQPL-LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 77555555553 34444433 335567777777777777665432111 2222
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIER-----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG 507 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 507 (676)
-...+.+.|+++.|.+.+-+|+.+ |++|...+.-.-. .+++.+...-+.-+...+. ....||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 333457889999999999999854 7777766543322 3445555555555555432 34578888988999998
Q ss_pred cHHHHHHHHHHchhhcCC-CCCHHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCcHHHHHHHHHH--HHHhCC---HhHH
Q 005802 508 SVEMGEKYFNSMTADYKI-SPETDHYACMIDLYGRA-NQLEKAIEFMKSIPTEEDAVILGSFLNV--CRLNRN---AELA 580 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~~~---~~~a 580 (676)
-++-|-.++-+-..- .. -.+...|+ |++++..+ -..++|.+-+......--.......+.. -...++ ...+
T Consensus 325 yf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 325 YFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 888888877543210 00 01222332 44555443 4667777665554311000011111111 111111 1223
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
++-++..+++. .......+++|.+..++.-+.++|+.-
T Consensus 403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 33334444331 123566778888999999999988754
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-06 Score=84.48 Aligned_cols=215 Identities=14% Similarity=0.111 Sum_probs=109.6
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHH-------HHHH
Q 005802 397 ILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERD---LVLYN-------VMIA 466 (676)
Q Consensus 397 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-------~l~~ 466 (676)
.+.++..+..++..+.+-+....+.. .++.-++....+|...|.+..+...-.+..+.. ..-|+ .+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444455555666666665555544 444445555566666666555544443332211 11122 2233
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHhhcCCH
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET-DHYACMIDLYGRANQL 545 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 545 (676)
+|.+.++++.|+..|++.......|+.. .+....+++....+... -+.|.. .-...-...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCH
Confidence 4555667777777777765543333322 12223333333333221 223331 1111224445556666
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 546 EKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 546 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+|++.+.+++ .+.|...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.+++..+
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666555 3335555555555666666666666666666666666666666666666666666666666665554
Q ss_pred CC
Q 005802 624 MK 625 (676)
Q Consensus 624 ~~ 625 (676)
..
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 43
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-07 Score=91.83 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhc-------------CCCCCHH--HHHHHHHHHh
Q 005802 476 KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADY-------------KISPETD--HYACMIDLYG 540 (676)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~l~~~~~ 540 (676)
.+...+..+...|+++ +|..|-..|.......-...++....... .-.|+.. ++.-+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4445566677777553 34444444554444444444444432211 1123333 3455677788
Q ss_pred hcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 541 RANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
..|++++|++++++.. ..| .+..+..-...+.+.|++++|...++.+.++++.|--+....+..+.+.|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999999999887 555 46677788889999999999999999999999998888888889999999999999999
Q ss_pred HHHHhCCC
Q 005802 619 KQMRGMKG 626 (676)
Q Consensus 619 ~~~~~~~~ 626 (676)
....+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-06 Score=76.99 Aligned_cols=121 Identities=19% Similarity=0.099 Sum_probs=77.4
Q ss_pred hhccchHHHHHhhhhcCCCCchhhHHHHHHH--HHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHH
Q 005802 171 SKCRCYEEACRVFEGCTEEVNLISKNAMVAA--CCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFV 248 (676)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 248 (676)
-+.+.+.+|+++...|...++...-..-+.+ ....+++..+..++++.+...+..+.+.......+.|+++.|++-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 3445555555555555443222222222222 23467778888888887755566666666666678899999999998
Q ss_pred HHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCC
Q 005802 249 RMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLIS 292 (676)
Q Consensus 249 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 292 (676)
...+-|---....|+..+.. .+.++...|.+...++++.|+..
T Consensus 169 aAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhc
Confidence 88775433345667766644 46788899999999998888643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-06 Score=75.85 Aligned_cols=301 Identities=12% Similarity=0.099 Sum_probs=162.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHH---HHHhcCCHHHHHHHHhccCCCCchhHHHH---HHHHHHcCCh
Q 005802 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIV---GYSLQGNMEEARRHFDSLTEKNVVVWTAL---FSGYVKAQNC 372 (676)
Q Consensus 299 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~~~~ 372 (676)
.+...+...|++..|+.-+....+.|+..|.++.+ .|...|+...|+.-+.+..+--+..+.+- ...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 34445555666666666666666666666555543 45556666555555555543222222222 2345667777
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 005802 373 EALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQN 452 (676)
Q Consensus 373 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (676)
+.|..-|+..+... |+..+- ..+..+....++- ......+..+...|+...|+..+..
T Consensus 123 e~A~~DF~~vl~~~---~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE---PSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHhcC---CCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 77777777653221 111100 0000000000000 0111122233445666666666665
Q ss_pred cC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH
Q 005802 453 FI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET 529 (676)
Q Consensus 453 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 529 (676)
+. ..+...|..-..+|...|++..|+.-+....+.. .-+..++..+-..+...|+.+.++...++.. .+.||.
T Consensus 181 llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdH 256 (504)
T KOG0624|consen 181 LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDH 256 (504)
T ss_pred HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcch
Confidence 54 2355566666667777777777766555544421 1233444445555566677766666666554 455652
Q ss_pred -HH---HHHH---------HHHHhhcCCHHHHHHHHHhCC-CCCcH--H---HHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 530 -DH---YACM---------IDLYGRANQLEKAIEFMKSIP-TEEDA--V---ILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 530 -~~---~~~l---------~~~~~~~g~~~~A~~~~~~~~-~~~~~--~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
.. |..| +......++|.++++-.++.. ..|.. . .+..+..++...+++.+|++...++++.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 12 2211 112334556666666655544 33331 1 2334444566777888888888888888
Q ss_pred cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 591 EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 591 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+|+|..++-.-+.+|.-...|++|+.-++...+-+
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888776643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9e-06 Score=84.32 Aligned_cols=592 Identities=14% Similarity=0.006 Sum_probs=299.5
Q ss_pred hHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHhccC
Q 005802 6 LKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE---RNVFSWNTIISACIKSHDLKQARSLFDSS 82 (676)
Q Consensus 6 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 82 (676)
...|...|=+..+.... -...|..|.+.|+..-+...|...|++.-+ .+...+......|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 34444444444444322 134677777777777777778888777655 45567777777788888888777764322
Q ss_pred CCCC-----cccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCC-ChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcC
Q 005802 83 PHKD-----LVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRM-DEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSN 156 (676)
Q Consensus 83 ~~~~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 156 (676)
.+.+ ...|.-.--.|...++.. .++.-|+...+ +.| |...|..+..+|...|++..|.++|......
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h-~aV~~fQsALR----~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLH-GAVCEFQSALR----TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchh-hHHHHHHHHhc----CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 2211 111222333445566666 77777777654 445 5567777777777777777777777666554
Q ss_pred CCCCchhhH--HHHHhhhccchHHHHHhhhhcCCC-C--------chhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCee
Q 005802 157 DASGFAVSS--LIDMYSKCRCYEEACRVFEGCTEE-V--------NLISKNAMVAACCREGEMEMALKTFWRQPELNDAV 225 (676)
Q Consensus 157 ~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~-~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 225 (676)
.|+. .|.. .....+..|++.+|+..+..+... . -..++-.+...+.-.|-..+|...++... .
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi-----e 699 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI-----E 699 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-----H
Confidence 2322 2222 223345567777777766654431 0 11111111222222222222222222211 1
Q ss_pred eH-HHHHHHHHhcC-C---hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCCh---HH---HHHHHHHHHHhCCCCch
Q 005802 226 SW-NTLISGYVQNG-D---AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNV---KC---AKEIHSWVLKNGLISNP 294 (676)
Q Consensus 226 ~~-~~li~~~~~~g-~---~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~---a~~~~~~~~~~~~~~~~ 294 (676)
.+ +.++...+... . ...|..+|-... .+ .|+.+...++..-.-..+.. +- +.+.+-.-. ....++
T Consensus 700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~ 775 (1238)
T KOG1127|consen 700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHM 775 (1238)
T ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhcc
Confidence 11 11111100000 0 112223333222 11 23433333333323222222 10 111110000 111223
Q ss_pred hHHHHHHHHHHh----cC----ChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC---CCchhHH
Q 005802 295 FVSSGIVDVYCK----CE----NMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE---KNVVVWT 360 (676)
Q Consensus 295 ~~~~~l~~~~~~----~g----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 360 (676)
..|..|...|.+ .| +...|...+.+... .+...|+.|... ...|++.-|.-.|-+-.. ....+|.
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 333333333332 22 22355566655443 456667766555 555677766666654432 3455677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHH--HH--cCCCCChhHHHHHHHH
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYI--LR--MGVQMDKKLISTLVDM 436 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~~~~l~~~ 436 (676)
.+.-.+.+..+++.|...|... ..-.+.|...+..........|+.-+...++..- .. .|--++..-+-+-...
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~--qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSV--QSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhh--hhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 7777778888888888888864 2222334444444444444556666666666542 22 1223344344444444
Q ss_pred HHhcCCHHHHHHHHhhcC-------------CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHhHHHH----
Q 005802 437 YSKCGNMTYAEIIFQNFI-------------ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK-GIKPDAVTFVA---- 498 (676)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~---- 498 (676)
....|+.++-...-+++. ......|.+.....-+.+.+..|.++..+.+.- -.+-+..+|+.
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 555666655554444432 123456666666666677777777766664420 01234444443
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCcH-HHHHHHHHHHHH
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP----TEEDA-VILGSFLNVCRL 573 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~l~~~~~~ 573 (676)
+.+.++..|.++.|..-+..... ..+..+...-+.. .=.++++++.+.|+++. ...+. ..+..++.+...
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~----evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWM----EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccch----hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhh
Confidence 23345556777766554433211 1111111111111 23578888888888877 22232 234445555667
Q ss_pred hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 574 NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+..+.|...+-+.....|.+......|..++.-..+-..-..+.+++.+
T Consensus 1088 ~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~k 1137 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEK 1137 (1238)
T ss_pred cccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 77888888888888888777777777777777666655555555555543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=88.39 Aligned_cols=225 Identities=11% Similarity=0.061 Sum_probs=146.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ-MDKKLISTLVDMY 437 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 437 (676)
..-+.+++...|+++.++.-+ .. +..|.......+...+....+-+.+..-+......... .+..........+
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei----~~-~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEI----KK-SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-----T-TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHh----cc-CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 344556677777766544322 22 22555555544444333323333333222222212222 2333333344566
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc----cCcHHHHH
Q 005802 438 SKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH----CGSVEMGE 513 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~ 513 (676)
...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. ...+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 7789999999988876 45666777889999999999999999999874 333 444445554432 34699999
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCH-hHHHHHHHHHHcc
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNA-ELAGEAEEKLLRL 590 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 590 (676)
.+|+++.. ...+++.+.+.+..++...|++++|.+++++.. .+.++.++..++-+....|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999965 446788999999999999999999999999877 455777888888888888887 7788899999988
Q ss_pred cCCCC
Q 005802 591 EGNNK 595 (676)
Q Consensus 591 ~p~~~ 595 (676)
+|.++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 88854
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=91.97 Aligned_cols=216 Identities=13% Similarity=0.151 Sum_probs=168.8
Q ss_pred HhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHH
Q 005802 403 ALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAIL 479 (676)
Q Consensus 403 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 479 (676)
.+.|++.+|.-.|+...+.. |-+...|.-|.......++-..|+.-+.+..+ .|.....+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 35666777776776666654 55677777788888888888888888877653 356677788888999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHH-----------HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 005802 480 LFEEMLEKGIKPDAVTFVAIL-----------SAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 548 (676)
.++.-+... |. |..+. ..+.......+..++|-.+....+..+|+.+...|.-.|.-.|++++|
T Consensus 375 ~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 998876632 11 11111 122333345566666666655546668889999999999999999999
Q ss_pred HHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 549 IEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 549 ~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
++.|+.+. .+| |...|+.|+..+....+.++|+..|.+++++.|.-......|+..|...|.|++|.+.+=.+...
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999988 444 77899999999999999999999999999999999999999999999999999999988777654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-07 Score=85.28 Aligned_cols=181 Identities=10% Similarity=-0.042 Sum_probs=114.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-c---chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh----
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RD-L---VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV---- 494 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---- 494 (676)
.....+..+...+...|+++.|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3445556666677777777777777776652 21 1 24556667777777777777777777763 23221
Q ss_pred HHHHHHHHhhcc--------CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHH
Q 005802 495 TFVAILSAFRHC--------GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILG 565 (676)
Q Consensus 495 ~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 565 (676)
++..+..++... |+++.|.+.++.+... .|+ ...+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 334444444433 5667777777777643 343 222222111100 00000 00112
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCC---ccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNK---ARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.+...+...|++++|+..++++++..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455678899999999999999999977654 678999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-05 Score=77.63 Aligned_cols=248 Identities=15% Similarity=0.065 Sum_probs=159.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCC------hhHHHH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMD------KKLIST 432 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 432 (676)
+..+.++..+..++..|++-+...+.. .-+..-++..-.++...+....+...-....+.|...- ...+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445666666777777777777765322 23334444455556666665555544444444332110 111222
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEM 511 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 511 (676)
+..+|.+.++++.+...|++...+... -....+....++++...+...- +.|... -...=...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 445777788899999999885432111 1122333445666665555544 334431 12223566888999999
Q ss_pred HHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 512 GEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 512 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
|+..|.+++.+ .|+ ...|....-+|.+.|.+..|++-.+... .++....|..-+.++....+|+.|.+.|.+++
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 465 8899999999999999999998877766 34444556555667788889999999999999
Q ss_pred cccCCCCccHHHHHHHHHhcCChhHHHHHHH
Q 005802 589 RLEGNNKARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 589 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
+.+|.+......+..++......+...++.+
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 9999998887777777765433333334433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-07 Score=81.83 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=112.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcC
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRAN 543 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 543 (676)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..... .|+ ...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~---~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCC
Confidence 3456777887776544433221 11 0122366777888777777643 444 888999999999999
Q ss_pred CHHHHHHHHHhCC--CCCcHHHHHHHHHHH-HHhCC--HhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 544 QLEKAIEFMKSIP--TEEDAVILGSFLNVC-RLNRN--AELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 544 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
++++|...+++.. .+.+...+..+..++ ...|+ .++|.++++++++.+|+++..+..|+..+.+.|++++|...|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999887 445777777777764 66676 599999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 005802 619 KQMRGMKG 626 (676)
Q Consensus 619 ~~~~~~~~ 626 (676)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99987655
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-07 Score=77.60 Aligned_cols=95 Identities=7% Similarity=-0.149 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
+..+...+...|++++|...|+... .+.+...|..+..++...|++++|+..|+++.+.+|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 4445666666777777777776665 34456666667677777777777777777777777777777777777777777
Q ss_pred ChhHHHHHHHHHHhCCC
Q 005802 610 NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~~ 626 (676)
++++|...++...+..+
T Consensus 107 ~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 107 EPGLAREAFQTAIKMSY 123 (144)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 77777777776665443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-05 Score=79.38 Aligned_cols=258 Identities=12% Similarity=-0.020 Sum_probs=150.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 005802 364 SGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK 439 (676)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (676)
..+...|++++|...+++.+.. .+.+...+.. ...+.. .+....+...+.. .....+........+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 3455677888888888776333 2223323221 112222 2333334443333 111112223344455667888
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH--hHHHHHHHHhhccCcHHHHH
Q 005802 440 CGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPDA--VTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~ 513 (676)
.|++++|...+++... .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999888887752 3456777888888899999999999988876422 1222 23456777788899999999
Q ss_pred HHHHHchhhcCCCCCHHHH-H--HHHHHHhhcCCHHHHHHH--H-HhCC-CCC---cHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 514 KYFNSMTADYKISPETDHY-A--CMIDLYGRANQLEKAIEF--M-KSIP-TEE---DAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
.++++........+..... + .++.-+...|....+..+ + .... ..| ..........++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875321111222111 1 223333334433222222 1 1111 101 111222455577888899999999
Q ss_pred HHHHHcccCC---------CCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 584 EEKLLRLEGN---------NKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 584 ~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
++.+...... ........+.++...|++++|.+.+.......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888764211 23445677788899999999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00012 Score=66.89 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=126.8
Q ss_pred HHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHH
Q 005802 401 ACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 401 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 477 (676)
.+...|+...+......+++.. +.+...+..-..+|...|++..|+.-+.... ..+....--+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3344555666666666655543 5566666666777777777777765554433 33555555566666777777777
Q ss_pred HHHHHHHHHCCCCCCHhH----HHHH---H------HHhhccCcHHHHHHHHHHchhhcCCCCC-----HHHHHHHHHHH
Q 005802 478 ILLFEEMLEKGIKPDAVT----FVAI---L------SAFRHCGSVEMGEKYFNSMTADYKISPE-----TDHYACMIDLY 539 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~----~~~l---l------~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~ 539 (676)
+...++..+ +.||... |..| . ......++|.++.+..+...+. .|. ...+..+-.++
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence 777777766 4565432 1111 1 1233457777887777777643 344 23455666777
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 540 GRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
...|++-+|+....++. ..| |..++..-..+|....+|+.|+.-|+++.+.++++..+
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 88899999999988887 444 46677777788999999999999999999999887544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.4e-07 Score=76.75 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=102.2
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 479 LLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 479 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
.++++..+ +.|+. +..+..++...|++++|...|+... ...|+ ...|..+..++.+.|++++|...|+++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45556555 34553 5556778889999999999999987 44565 8889999999999999999999999988
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 557 -TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 557 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+.++..+..++.++...|++++|+..++++++..|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 556888999999999999999999999999999999999999888777653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00039 Score=67.75 Aligned_cols=175 Identities=14% Similarity=0.143 Sum_probs=124.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 005802 371 NCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQM-DKKLISTLVDMYSKCGNMTYAEII 449 (676)
Q Consensus 371 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 449 (676)
..+.....+++.+....+.|+ .+|...++...+..-+..|+.+|.++.+.+..+ +..+.++++..|| .++.+-|.++
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 356666777776444455555 456667777778888889999999999887766 7778888888777 4778888888
Q ss_pred HhhcCC--CCcch-HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcC
Q 005802 450 FQNFIE--RDLVL-YNVMIACYAHHGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYK 524 (676)
Q Consensus 450 ~~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 524 (676)
|+--.+ +|... -...+.-+...++-..+..+|++....++.|+ ...|..++.--+.-|+...+.++-+++...+.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 886553 34443 35567777888888999999999988876766 46788899888888999998888887765443
Q ss_pred --CCCCHHHHHHHHHHHhhcCCHHH
Q 005802 525 --ISPETDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 525 --~~p~~~~~~~l~~~~~~~g~~~~ 547 (676)
..|....-..+++-|.=.+....
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccc
Confidence 33333333445555555554433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-06 Score=92.45 Aligned_cols=199 Identities=13% Similarity=0.122 Sum_probs=170.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhH
Q 005802 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER--------DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVT 495 (676)
Q Consensus 424 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 495 (676)
|.+...|-..|......++.++|+++.++..+. -...|.++++.....|.-+...++|++..+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 555667888888889999999999999877532 3457999998888889889999999999873 223456
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---cHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE---DAVILGSFLNVC 571 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 571 (676)
|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.++.+-++|..++.++. .-| .......++..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999998766 567889999999999999999999998877 223 455666777788
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.+.||.+++..+|+..+...|.-...|..+++.-.+.|+.+.++.+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999999999999988765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-06 Score=89.43 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=78.4
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHH
Q 005802 490 KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGS 566 (676)
Q Consensus 490 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ 566 (676)
..+...+..|.....+.|.+++|..+++... .+.|+ ......++..+.+.+++++|+..+++.. ..| +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3345555555666666666666666666665 34555 4555556666666666666666666655 223 3444455
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+..++...|++++|..+|+++...+|+++..+..++.++...|+.++|...|+...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666666666666666666666666666666666666666666666543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=71.56 Aligned_cols=96 Identities=9% Similarity=-0.044 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
....-.+...+...|++++|.++|+-.. .+-+...|..|..+|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5555667788889999999999999877 45578889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|+.+.|++.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988753
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00011 Score=73.39 Aligned_cols=266 Identities=11% Similarity=0.026 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHH-HHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHH---
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVI-LLGACALQAALHPGKEIHAYILRMGVQMDKKLIST--- 432 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 432 (676)
..|..+...+...|+.+.+...+..........++...... ....+...|+++.|..+++...+.. |.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 35566666677778888877777665333333334322222 2334567889999999999888764 444434331
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCc---chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIERDL---VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
........+..+.+.+.+......+. .....+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 22222234566666666665332222 233455667889999999999999999853 23456677788889999999
Q ss_pred HHHHHHHHHchhhcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHH------HHHHHHHHhCCHhHH
Q 005802 510 EMGEKYFNSMTADYKISPET--DHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILG------SFLNVCRLNRNAELA 580 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~------~l~~~~~~~~~~~~a 580 (676)
++|..+++.........|+. ..|..+...+...|++++|..++++.. ..|....+. .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999887542222332 346678899999999999999999975 223111111 223333444543333
Q ss_pred HHH---HHHHHcccCCCC--ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 581 GEA---EEKLLRLEGNNK--ARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 581 ~~~---~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.+. ........|... ....+.+.++...|+.++|...++.+...
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 333 122111112211 22236777888999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00011 Score=83.69 Aligned_cols=321 Identities=11% Similarity=0.012 Sum_probs=177.5
Q ss_pred HHhcCChHHHHHHHHhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHhccCC----CC---c-----hhHHHHHHHHH
Q 005802 304 YCKCENMNYAESMLLLKGV----RNSFSISSMIVGYSLQGNMEEARRHFDSLTE----KN---V-----VVWTALFSGYV 367 (676)
Q Consensus 304 ~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~li~~~~ 367 (676)
....|+.+.+...+..+.. .++.........+...|+++++..++..... .+ . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445566666555555421 1222223334445566777777776654421 11 1 11122233455
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCH----hHHHHHHHHHHhhcChhHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 005802 368 KAQNCEALFDLLSEFVTKEGVVTDA----LILVILLGACALQAALHPGKEIHAYILRMGV---QM--DKKLISTLVDMYS 438 (676)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 438 (676)
..|++++|...+++.+..... .+. .....+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 678888888888776332111 111 2233444455667888888777766654211 11 1223445566677
Q ss_pred hcCCHHHHHHHHhhcCC-------CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC--HhHHHHHHHHh
Q 005802 439 KCGNMTYAEIIFQNFIE-------RD----LVLYNVMIACYAHHGHEEKAILLFEEMLEK--GIKPD--AVTFVAILSAF 503 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~ 503 (676)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 78888888777665431 11 112334455566678888888888776542 11122 22333445566
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCCHHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CcHH----HHHHHHHHHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPETDHY-----ACMIDLYGRANQLEKAIEFMKSIPTE--EDAV----ILGSFLNVCR 572 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~l~~~~~ 572 (676)
...|+++.|.+.++....-.........+ ...+..+...|+.+.|.+++...... .... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77888888888877764321111110101 11123345578888888887665511 1111 1345555677
Q ss_pred HhCCHhHHHHHHHHHHcccCC------CCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 573 LNRNAELAGEAEEKLLRLEGN------NKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
..|++++|...++++.+.... ....+..++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 788888888888888765211 12356677788888888888888888877643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-05 Score=67.30 Aligned_cols=176 Identities=10% Similarity=0.028 Sum_probs=121.4
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005802 413 EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD 492 (676)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 492 (676)
.+.+.+.......+......-...|+..|++++|.+..+... +......=+..+.+..+.+-|.+.+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 345555555444444444444566788888888888887733 3333333345567777888888888888862 35
Q ss_pred HhHHHHHHHHhhc----cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 493 AVTFVAILSAFRH----CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 493 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
..|.+.|.+++.+ .+.+.+|.-+|++|.+ +..|+..+.+-..-++...|++++|..++++.. ...++.++..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 6777767666543 4568888889998864 467888888888888888889999988888887 4456777776
Q ss_pred HHHHHHHhC-CHhHHHHHHHHHHcccCCCC
Q 005802 567 FLNVCRLNR-NAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 567 l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~ 595 (676)
++-+....| +.+--.+...++....|.++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 666555555 44566677777777777754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-06 Score=73.77 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=81.1
Q ss_pred CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHH
Q 005802 525 ISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 525 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
..|+ ......+...+...|++++|.+.++... .+.++..+..+...+...|++++|...++++.+..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3454 4556677777888888888888888775 445677788888888888888899888888888888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 005802 602 ANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+.+|...|++++|...++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999888877653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-05 Score=80.38 Aligned_cols=189 Identities=16% Similarity=0.111 Sum_probs=133.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 422 GVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
+.+|-...-..+...+...|-...|..+|+++. .|.-.+.+|+..|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 345555556667778888888888888888754 667778888888888888888777776 3677778887777
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
......-+++|.++.+....+ .-..+.....+.++++++.+.++... .+-...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777777777777755332 11122233334677777777776654 33456677777777777777777
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
|...|.....+.|++...|+.+..+|.+.|+..+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777776654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=8e-08 Score=56.75 Aligned_cols=33 Identities=39% Similarity=0.504 Sum_probs=25.5
Q ss_pred CCCCCcccHHHHHHHHHhCCCchHHHHHhccCC
Q 005802 20 GLTLTTITTNQLIHIYSKHNLLRESRKLFDEMP 52 (676)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 52 (676)
|++||..+|+.||.+||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777788888877777777777777777764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.1e-06 Score=72.52 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=117.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 513 (676)
+..|...|+++.+....+.+..+. . .+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877655544332221 0 1123567788888888877753 446778888999999999999999
Q ss_pred HHHHHchhhcCCCCC-HHHHHHHHHHH-hhcCC--HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 514 KYFNSMTADYKISPE-TDHYACMIDLY-GRANQ--LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
..|++.. .+.|+ ...+..+..++ .+.|+ .++|.+++++.. .+.+...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999887 44565 88888888864 67777 599999999988 4557788888989999999999999999999
Q ss_pred HcccCCCCccHH
Q 005802 588 LRLEGNNKARYV 599 (676)
Q Consensus 588 ~~~~p~~~~~~~ 599 (676)
.+..|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999888765443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-05 Score=73.86 Aligned_cols=212 Identities=7% Similarity=0.039 Sum_probs=136.7
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCC--hhHHHH
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCG-NMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGH--EEKAIL 479 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~A~~ 479 (676)
+..+.|..+...+++.. +-+..+++....++...| ++++++..++++.+ .+..+|+.....+.+.|+ .++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34444444444444433 223334443444444445 46777777776653 244456554444455554 267788
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc---CC----HHHHHHHH
Q 005802 480 LFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA---NQ----LEKAIEFM 552 (676)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~ 552 (676)
+++++++.. +-|...|.....++...|+++++++.++++.+. . .-+...|+....++.+. |. .++++++.
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 888888743 235677887777888888899999999988754 2 22366666666555444 22 24667777
Q ss_pred HhCC--CCCcHHHHHHHHHHHHHh----CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC-----------------
Q 005802 553 KSIP--TEEDAVILGSFLNVCRLN----RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG----------------- 609 (676)
Q Consensus 553 ~~~~--~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 609 (676)
.++. .+.+...|+.+...+... +...+|...+.++.+..|.++.....|+++|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 5555 455778888888888773 34567889999988889999889999999998642
Q ss_pred -ChhHHHHHHHHH
Q 005802 610 -NWAEMGRIRKQM 621 (676)
Q Consensus 610 -~~~~A~~~~~~~ 621 (676)
..++|.++++.+
T Consensus 287 ~~~~~a~~~~~~l 299 (320)
T PLN02789 287 SDSTLAQAVCSEL 299 (320)
T ss_pred ccHHHHHHHHHHH
Confidence 236677777777
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-06 Score=84.24 Aligned_cols=219 Identities=11% Similarity=0.018 Sum_probs=156.9
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchHHHHHH
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIA 466 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~ 466 (676)
+|-...-..+...+...|-...|..+++.+. .+...+.+|+..|+..+|..+...-. +|+...|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3333344444555566666677777666543 34567778888888888877766544 456677777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCH
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQL 545 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 545 (676)
.....--++.|.++.+..... .-..+.....+.++++++.+.|+.-.+ +.|- ..+|-.+.-+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhh
Confidence 766666677777777654432 111122223346888888888887653 3443 77788888888888999
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 546 EKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 546 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.|.+.|.... .+.+...|+++-.+|.+.++-.+|...+.++.+-+-.+..+|.....+...-|.|++|.+.+.++..
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 99998888877 4446678999999999999999999999999988888888888888888899999999999888876
Q ss_pred CCC
Q 005802 624 MKG 626 (676)
Q Consensus 624 ~~~ 626 (676)
...
T Consensus 616 ~~~ 618 (777)
T KOG1128|consen 616 LRK 618 (777)
T ss_pred hhh
Confidence 544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00048 Score=78.37 Aligned_cols=259 Identities=10% Similarity=0.004 Sum_probs=159.3
Q ss_pred HHHhcCCHHHHHHHHhccCC----CCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----CCCHhHHHHHHHH
Q 005802 334 GYSLQGNMEEARRHFDSLTE----KNV----VVWTALFSGYVKAQNCEALFDLLSEFVTKEGV----VTDALILVILLGA 401 (676)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~p~~~~~~~ll~~ 401 (676)
.+...|++++|...+++... .+. ...+.+...+...|++++|...+.+......- .+...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 34566777777777665432 111 23455556677788888888888776322111 1112334455556
Q ss_pred HHhhcChhHHHHHHHHHHHc----CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC------C--CcchHHHHHH
Q 005802 402 CALQAALHPGKEIHAYILRM----GVQM---DKKLISTLVDMYSKCGNMTYAEIIFQNFIE------R--DLVLYNVMIA 466 (676)
Q Consensus 402 ~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~ 466 (676)
+...|+++.|...+...... +... ....+..+...+...|++++|...+.+... + ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 77788888888877665542 2211 122344556667778999999888876531 1 1223444566
Q ss_pred HHHHcCChhHHHHHHHHHHHCC--CCCCHh--HH--HHHHHHhhccCcHHHHHHHHHHchhhcCCCCC---HHHHHHHHH
Q 005802 467 CYAHHGHEEKAILLFEEMLEKG--IKPDAV--TF--VAILSAFRHCGSVEMGEKYFNSMTADYKISPE---TDHYACMID 537 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 537 (676)
.+...|+.++|...+++..... ...... .. ...+..+...|+.+.|..++...... ..... ...+..+..
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHH
Confidence 7788999999999988875421 111110 10 11123345578999999998776432 11111 112346777
Q ss_pred HHhhcCCHHHHHHHHHhCC-------CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 538 LYGRANQLEKAIEFMKSIP-------TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
++...|+.++|...+++.. ... ...+...+..++...|+.++|...+.++.+....
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 8889999999999988875 111 1224555666888999999999999999988543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-07 Score=54.76 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005802 524 KISPETDHYACMIDLYGRANQLEKAIEFMKSI 555 (676)
Q Consensus 524 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 555 (676)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-05 Score=69.56 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh
Q 005802 462 NVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR 541 (676)
Q Consensus 462 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 541 (676)
..+-..+...|+-+....+..+.... ..-|......++....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33444555556666666555554331 122333444455666666777777766666643 334446666666666777
Q ss_pred cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHH
Q 005802 542 ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
.|+.++|..-|.+.. .+.++...+.+...+.-.|+.+.|..++..+....+.+..+-..|+-+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777776666665554 344566666666666677777777777776666666666666666666667777776666553
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.3e-06 Score=72.65 Aligned_cols=136 Identities=10% Similarity=0.050 Sum_probs=116.2
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 489 IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
..|+......+-..+...|+-+....+...... ...-+......++....+.|++.+|+..+++.. .++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 356544335566777888988888888887643 233346677779999999999999999999988 7789999999
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+..+|-+.|+++.|...|.+++++.|.++.+...|+..|.-.|++++|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999887655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=74.98 Aligned_cols=182 Identities=13% Similarity=0.028 Sum_probs=126.2
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ccc---
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDK---KLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLV--- 459 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~--- 459 (676)
......+..+...+...|+++.|...++.+.... +.++ ..+..+..++.+.|+++.|...++++.+ | +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3345667777788889999999999999988764 2222 4667788999999999999999998863 3 222
Q ss_pred hHHHHHHHHHHc--------CChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHH
Q 005802 460 LYNVMIACYAHH--------GHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD 530 (676)
Q Consensus 460 ~~~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 530 (676)
++..+..++... |+.++|.+.|+++... .|+.. ....+.... . .. ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~------~~~---------~~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LR------NRL---------AG 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HH------HHH---------HH
Confidence 455555666554 7789999999999874 45432 222111110 0 00 000 01
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
....+...+.+.|++++|+..+++.. ..| .+..+..++.++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12256677888999999999888876 222 346788888899999999999998888877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.6e-05 Score=81.46 Aligned_cols=220 Identities=15% Similarity=0.138 Sum_probs=169.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--------CchhHHHHHHHHHhcCCHHHHHHHHhccCCC-C-chhHH
Q 005802 291 ISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR--------NSFSISSMIVGYSLQGNMEEARRHFDSLTEK-N-VVVWT 360 (676)
Q Consensus 291 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 360 (676)
+.+...|-..|......++.+.|+++.++.... -...|.++++.....|.-+...++|+++.+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 345567777788888888888888877665531 2357888888888888888889999998763 3 35688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC-CChhHHHHHHHHHHh
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ-MDKKLISTLVDMYSK 439 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 439 (676)
.|...|.+.+.+++|.++|+.|+.+-+ -....|...+..+.+.++-+.|..++.++.+.-.. -......-.+.+-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999976665 55667888888888888889999999888876422 234555666778888
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCcHHHH
Q 005802 440 CGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGSVEMG 512 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a 512 (676)
.|+.+++..+|+.... .-...|+..++.-.++|+.+.+..+|++.+..++.|-. ..|...+..-.+.|+-..+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 9999999999998763 25668999999999999999999999999998887753 4566666655555654433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-05 Score=68.39 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=52.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005802 471 HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIE 550 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 550 (676)
.|++++|+++++.+.+.. +.|..++..=+...-..|+.-+|++-+....+ .+.-|...|..+...|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 445555555555555443 22333343333333334444444444444433 223344555555555555555555555
Q ss_pred HHHhCC-CCC-cHHHHHHHHHHHHHhC---CHhHHHHHHHHHHcccC
Q 005802 551 FMKSIP-TEE-DAVILGSFLNVCRLNR---NAELAGEAEEKLLRLEG 592 (676)
Q Consensus 551 ~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p 592 (676)
.++++. ..| ++..+..+...+...| +.+.+..+|+++++++|
T Consensus 176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 555544 222 3333334443332222 34445555555555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.5e-05 Score=72.95 Aligned_cols=190 Identities=8% Similarity=0.052 Sum_probs=142.5
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc-
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHG-HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS- 508 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~- 508 (676)
-..+...+..++|..+..++++. +..+|+....++...| ++++++..++++.+... -+..+|+.-...+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 33445567888999999888744 3445665566666777 57999999999998542 244556655555555565
Q ss_pred -HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh---CC----H
Q 005802 509 -VEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN---RN----A 577 (676)
Q Consensus 509 -~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~----~ 577 (676)
.+++..+++.+.+. .|. ...|.....++.+.|+++++++.++++. .+.+...|+....++... |. .
T Consensus 123 ~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 36788899888743 454 8889999999999999999999999998 455777888777766554 22 3
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHHHHhc----CChhHHHHHHHHHHhCCCc
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANVYAAE----GNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~ 627 (676)
+.++....++++.+|+|.++|..+..++... ++..+|.++..+..+.+++
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 5788888899999999999999999999883 4567788888887765554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00013 Score=70.40 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=73.6
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEED-AVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~ 579 (676)
+...|++++|+..++.+... .|+ +..+....+.+.+.++.++|.+.++++. ..|+ +..+..+..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34556777777777776642 344 5555566677777777777777777766 3443 5566666667777777777
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
|+..++.....+|+++..|..|+.+|...|+..+|....
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 777777777777777777777777766665544444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-06 Score=80.49 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=102.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRL 573 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 573 (676)
...|+..+...++++.|..+++++.+. .|+. ...++..+...++-.+|++++.+.. .+.+...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566677788899999999998754 3553 4457888888888899999988877 33466677777778999
Q ss_pred hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 574 NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.++++.|+.+.+++.+..|.+...|..|+.+|.+.|++++|+-.+..+.-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999999999999999999999999999999988863
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00011 Score=77.96 Aligned_cols=137 Identities=9% Similarity=0.079 Sum_probs=99.6
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYAC 534 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 534 (676)
++..+..|.....+.|++++|..+++...+ +.|+ ......+...+.+.+++++|...+++... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 455666777777788888888888888877 5666 34555666777888888888888887763 3555 666777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
+..++.+.|++++|..+|+++. .+.++..+..+..++...|+.++|...|+++++...+....|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 7778888888888888888877 233466777777788888888888888888887755444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00014 Score=70.28 Aligned_cols=145 Identities=12% Similarity=0.032 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMID 537 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 537 (676)
.+.-....+...|++++|+..++.++.. .|+ ..........+...++..+|.+.++.+.. ..|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 3334444556779999999999998875 455 44455556788999999999999999984 4677 566667899
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHH
Q 005802 538 LYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMG 615 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 615 (676)
+|.+.|++.+|+.++++.. .+.|+..|..|..+|...|+..++... .+..|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 9999999999999999887 666899999999999999998776655 355677889999999
Q ss_pred HHHHHHHhCCC
Q 005802 616 RIRKQMRGMKG 626 (676)
Q Consensus 616 ~~~~~~~~~~~ 626 (676)
..+...+++.-
T Consensus 446 ~~l~~A~~~~~ 456 (484)
T COG4783 446 IFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHhcc
Confidence 99999887653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-05 Score=74.27 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=134.9
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------------CcchHH
Q 005802 395 LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER------------DLVLYN 462 (676)
Q Consensus 395 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~ 462 (676)
|..|-......++-..|...+.+..+.. +.+......|.-.|...|.-..|...+++-+.. +...-+
T Consensus 322 W~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~ 400 (579)
T KOG1125|consen 322 WQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFEN 400 (579)
T ss_pred HHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccC
Confidence 3333333333333344444444444433 334444555555555566555666555544210 000000
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHh
Q 005802 463 VMIACYAHHGHEEKAILLFEEML-EKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYG 540 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 540 (676)
. ..+..........++|-++. ..+..+|......|.-.|.-.|++++|...|+..+ .++|+ ...|+.|.-.++
T Consensus 401 ~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 401 T--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLA 475 (579)
T ss_pred C--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhc
Confidence 0 11111122334444554444 45544667777777777888899999999999887 45777 788999999999
Q ss_pred hcCCHHHHHHHHHhCC-CCCcH-HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC----------CccHHHHHHHHHhc
Q 005802 541 RANQLEKAIEFMKSIP-TEEDA-VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN----------KARYVQLANVYAAE 608 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~ 608 (676)
...+.++|+..|.++. ..|.. .++-.+.-+|...|.|++|...|-.++.+.+.+ ..+|..|=.++.-.
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 9999999999999988 56654 477788889999999999999999998885441 13566666666666
Q ss_pred CChhHHHHH
Q 005802 609 GNWAEMGRI 617 (676)
Q Consensus 609 g~~~~A~~~ 617 (676)
++.|-+.+.
T Consensus 556 ~~~D~l~~a 564 (579)
T KOG1125|consen 556 NRSDLLQEA 564 (579)
T ss_pred CCchHHHHh
Confidence 666644443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.01 Score=61.98 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHcCChh---HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEE---KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMI 536 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 536 (676)
+-+.|++.+-+.++.. +|+-+++.-.... +.|..+=..+|..|+-.|-+..|.++|+.+--+ .+.-|...|. +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 4567788888888755 4555555554431 234455566788999999999999999999766 6666644443 34
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC----CccHHHHHHHHHhcCC
Q 005802 537 DLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN----KARYVQLANVYAAEGN 610 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~ 610 (676)
..+...|++..+...+.... ...+..-..-++....+.|.+.+-.+...--..+.... ...-......+...++
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55566778877777766654 11111122223334456677776666554333332211 1223455566777888
Q ss_pred hhHHHHHHHHHH
Q 005802 611 WAEMGRIRKQMR 622 (676)
Q Consensus 611 ~~~A~~~~~~~~ 622 (676)
.++-...++.|+
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 888888888876
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00017 Score=77.11 Aligned_cols=148 Identities=12% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH 505 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 505 (676)
.+..+..+|-+.|+.++|...|+++.+ .|+.+.|.+.-.|... +.++|.+++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555566666666666655542 2444555555555555 555555555554432 333
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAE 584 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 584 (676)
.+++..+.++|..+.. ..|+ ...+..+.......-. ...-..++.-+...|...+++++++.++
T Consensus 182 ~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~------------~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHRE------------FTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhc------------cchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4455555555555542 1222 2222222222211111 1122334444556777888899999999
Q ss_pred HHHHcccCCCCccHHHHHHHHHh
Q 005802 585 EKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 585 ~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
+.+++.+|.|.....-++..|..
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHHH
Confidence 99999999988888888888763
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-05 Score=65.10 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcH----HHHHHHHHHHHHhCCHhH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDA----VILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~ 579 (676)
.++...+...++.+...++-.|- ....-.+...+...|++++|...|+.+. ..|++ .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 56666666666666554322211 2233334555666677777776666665 22332 233445556667777777
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
|+..++.. ...+-.+..+..++++|.+.|++++|+..|+..
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77776552 223334556667777777777777777777653
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0002 Score=63.29 Aligned_cols=244 Identities=13% Similarity=0.098 Sum_probs=159.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 005802 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGN 442 (676)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (676)
++-+.-.|++..++..-... . +.+.+...-..+.++|...|...... ..+.... .|....+..+......-++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~-~--~~~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKF-S--SSKTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhh-c--cccchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcch
Confidence 34455668888877766654 2 22244445555566666666654322 2222222 3333333334443333444
Q ss_pred HHHHH-HHHhhcCCC----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHH
Q 005802 443 MTYAE-IIFQNFIER----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFN 517 (676)
Q Consensus 443 ~~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 517 (676)
.++-. ++.+.+..+ +......-...|+..|++++|++..+... +......=+..+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 333333332 22222333456889999999999887621 22223333445667788999999999
Q ss_pred HchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 518 SMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 518 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
.|.+- -+..+.+.|..++.+ .+...+|.-+|+++. .+|.+.+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 99642 346677777776654 457899999999998 57888899999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCChhHHH-HHHHHHHh
Q 005802 592 GNNKARYVQLANVYAAEGNWAEMG-RIRKQMRG 623 (676)
Q Consensus 592 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 623 (676)
+.+|.+...++-+-...|+-.++. +.+..++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999998888888888876654 45555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.014 Score=61.09 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=89.3
Q ss_pred HHHHHHHHHhhcChhH---HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCcchHHHHHHH
Q 005802 395 LVILLGACALQAALHP---GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI----ERDLVLYNVMIAC 467 (676)
Q Consensus 395 ~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~ 467 (676)
.+.++..+-+.++... |.-+++...... +.|..+-..+|..|+-.|-+..|.++|..+. +.|...|. +...
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 3455666777776553 333444433332 4555666678888988899999999998775 23433332 3344
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHH---HHchhhcCCCCCHHHHHHHHHHHhhcC
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYF---NSMTADYKISPETDHYACMIDLYGRAN 543 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~---~~~~~~~~~~p~~~~~~~l~~~~~~~g 543 (676)
+...|++..+...++....- +..+ ..+-..+..+| +.|.+++..++. +++... ...--..+-+..++.+...+
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC
Confidence 55667777777777665431 0111 12222333344 345555544433 222211 00111334456677788888
Q ss_pred CHHHHHHHHHhCCCCC
Q 005802 544 QLEKAIEFMKSIPTEE 559 (676)
Q Consensus 544 ~~~~A~~~~~~~~~~~ 559 (676)
+.++-...+..|..+|
T Consensus 594 ~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 594 RGTQLLKLLESMKLPP 609 (932)
T ss_pred cHHHHHHHHhccccCc
Confidence 8888888888777333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.7e-05 Score=64.73 Aligned_cols=186 Identities=14% Similarity=0.174 Sum_probs=147.9
Q ss_pred hcCCHHHHHHHHhhcCC--------CCc-chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH-HHHhhccCc
Q 005802 439 KCGNMTYAEIIFQNFIE--------RDL-VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI-LSAFRHCGS 508 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~ 508 (676)
...+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++.++ + |...-...+ ..-+...|.
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 34578888888887751 222 24556666777889999999999999886 3 543322222 223566799
Q ss_pred HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 509 VEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
+++|.++++.+.++ .|+ ..++..-+-..-..|+.-+|++-+.+.. +..|...|..+...|...|++++|.-.++
T Consensus 102 ~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999999875 354 7777777777788898889998888777 67899999999999999999999999999
Q ss_pred HHHcccCCCCccHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCccc
Q 005802 586 KLLRLEGNNKARYVQLANVYAAEG---NWAEMGRIRKQMRGMKGNRF 629 (676)
Q Consensus 586 ~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~ 629 (676)
+++-..|.++-.+..|+.++.-.| +..-|++++.+..+...+..
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 999999999999999999987766 67788999999988776443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.9e-05 Score=64.08 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 005802 480 LFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-- 556 (676)
Q Consensus 480 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 556 (676)
.+++... ..|+ ......+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455554 3443 344556667788889999999999988653 12347888888999999999999999988875
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.+.++..+..+..++...|++++|...++++.+..|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 45567788888889999999999999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=60.99 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
+..+...+...|++++|...++++. .+.+...+..+...+...+++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556777788888999988888776 33345677777788888899999999999999998888888999999999999
Q ss_pred ChhHHHHHHHHHHhCC
Q 005802 610 NWAEMGRIRKQMRGMK 625 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~ 625 (676)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00025 Score=75.95 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=89.5
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 548 (676)
...++.-...+...|.+. .-+...+..+..+|.+.|+.++|..+|+++.+- .|+ +...+.+...|... ++++|
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA---DRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHh-hHHHH
Confidence 333443333344444442 223345666667777777777777777777632 344 67777777777777 77777
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH--------------------HHHHHHHhc
Q 005802 549 IEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV--------------------QLANVYAAE 608 (676)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~~~ 608 (676)
++++.++. ..+...+++..+..+++++.+.+|++...+. -|-..|...
T Consensus 169 ~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 169 ITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 77776653 2355556677777777777777666644432 233556667
Q ss_pred CChhHHHHHHHHHHhCCCccc
Q 005802 609 GNWAEMGRIRKQMRGMKGNRF 629 (676)
Q Consensus 609 g~~~~A~~~~~~~~~~~~~~~ 629 (676)
++|+++..+++.+.+...+..
T Consensus 237 ~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred hhhhHHHHHHHHHHhcCCcch
Confidence 899999999999998766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-05 Score=71.90 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=73.9
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 579 (676)
..+.+++.+|+..|.+.+ .+.|+ ...|..-..+|.+.|.++.|++-.+... ..| ...+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 557788888888888887 55666 6666677888888888888888888777 344 44578888888888888888
Q ss_pred HHHHHHHHHcccCCCCccHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l 601 (676)
|++.|+++++++|++......|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888887544444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.7e-06 Score=50.26 Aligned_cols=35 Identities=43% Similarity=0.665 Sum_probs=30.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNE 259 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 259 (676)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-05 Score=75.26 Aligned_cols=101 Identities=11% Similarity=0.005 Sum_probs=68.1
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNA 577 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 577 (676)
..+...|++++|...|+++.. ..|+ ...|..+..+|.+.|++++|+..++++. .+.+...+..++.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 445566777777777777764 2444 6666677777777777777777777766 334556666677777777777
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
+.|+..++++++++|+++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777776655555444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.3e-06 Score=64.29 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHhCC-CCC---cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHH
Q 005802 542 ANQLEKAIEFMKSIP-TEE---DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRI 617 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 617 (676)
.|++++|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 466777777777666 222 445556677777888888888888877 666666666777778888888888888888
Q ss_pred HHH
Q 005802 618 RKQ 620 (676)
Q Consensus 618 ~~~ 620 (676)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0001 Score=72.02 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS 508 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 508 (676)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+.. +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344556666677888889999998887777777778888888888889999998888642 2345555555666888899
Q ss_pred HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 509 VEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
++.|..+.+++. ...|+ ..+|..|+.+|.+.|+++.|+-.++.++
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999887 55677 7789999999999999999999998887
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.6e-05 Score=62.04 Aligned_cols=96 Identities=10% Similarity=-0.051 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC---CccHHHHH
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN---KARYVQLA 602 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 602 (676)
++..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++++....|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34455556666666666666666654 2222 2344556666677777777777777777666654 34566677
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC
Q 005802 603 NVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.++.+.|++++|.+.++.+.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 777777777777777777766544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.5e-06 Score=58.79 Aligned_cols=65 Identities=22% Similarity=0.154 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG-NWAEMGRIRKQMRGM 624 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 624 (676)
++..|..++..+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999988754
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00025 Score=59.84 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPD---AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACM 535 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 535 (676)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... ...|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33444444 4677777777788887753 112 122333445677788888888888888765 32232 2234456
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
...+...|++++|+..++... ....+..+...+.++...|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777888888888888887765 2234556666777888888888888888775
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.4e-06 Score=48.91 Aligned_cols=35 Identities=49% Similarity=0.815 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA 493 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 493 (676)
.+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888999999999999999999999998888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.3e-06 Score=48.96 Aligned_cols=33 Identities=33% Similarity=0.606 Sum_probs=26.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRW 257 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 257 (676)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=59.74 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=84.6
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
|++++ ....-....-+...|++++|..+|+-+. ..-++..|..|..+|...+++++|+..|..+..+.++||..+.+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55544 3333345556678999999999998766 45577788889999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+.+|...|+.+.|+..|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=57.11 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=52.3
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+...+...|++++|+..++++++..|.++..+..++.++...|++++|...++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788899999999999999999999999999999999999999999999998876554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=47.56 Aligned_cols=33 Identities=39% Similarity=0.738 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP 491 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 491 (676)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.5e-05 Score=69.31 Aligned_cols=106 Identities=13% Similarity=0.103 Sum_probs=91.7
Q ss_pred CCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh---CCHhHHHHHHHHHHcccCCCCccHH
Q 005802 526 SPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN---RNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 526 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
.|+ ...|..|...|...|+...|..-|.+.. .++++..+..+..++..+ .+..++..+++++++.+|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 354 8999999999999999999999999887 667888888888865443 2567999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcccCc
Q 005802 600 QLANVYAAEGNWAEMGRIRKQMRGMKGNRFAG 631 (676)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 631 (676)
.|+..+...|++.+|...|+.|.+..+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999887755444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=58.52 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=64.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc----HHHHHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEED----AVILGSFL 568 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 568 (676)
++..+...+.+.|++++|...|+.+...+.-.|. ...+..+..++.+.|++++|.+.++++. ..|+ +..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555566667777777777776544211111 3345556777777777777777777665 2222 34566666
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.++...|+.++|...++++++..|+++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 77777888888888888888877776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.5e-05 Score=66.79 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=81.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcC
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRAN 543 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 543 (676)
.-+.+.+++.+|+..|.+.++ +.|+ .+-|..=..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 446788999999999999998 5665 5556666778999999999999998887 56777 889999999999999
Q ss_pred CHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 005802 544 QLEKAIEFMKSIP-TEEDAVILGSFLN 569 (676)
Q Consensus 544 ~~~~A~~~~~~~~-~~~~~~~~~~l~~ 569 (676)
++++|++.|++.. ..|+..+|..=+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999988 6776665544433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.9e-05 Score=54.83 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=45.1
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
...|++++|+..++++.+.+|+++..+..|+.+|.+.|++++|.++++.+....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4678888999999999888898888888899999999999999988887765433
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00022 Score=70.09 Aligned_cols=102 Identities=9% Similarity=0.022 Sum_probs=81.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA 542 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 542 (676)
....+...|++++|++.|++.++.. +-+...|..+..+|...|++++|+..++++.. +.|+ ...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999853 23466777888899999999999999999974 4565 77888999999999
Q ss_pred CCHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 005802 543 NQLEKAIEFMKSIP-TEEDAVILGSFLN 569 (676)
Q Consensus 543 g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 569 (676)
|++++|+..|+++. ..|+...+...+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999987 5555444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=62.35 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP-TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
...+..+...+...|++++|...+++.. ..|+ ...+..+..++...|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4455666666777777777777777665 2221 3466777778888888888888888888888888888888888
Q ss_pred HHHhcCC--------------hhHHHHHHHHHHhCCC
Q 005802 604 VYAAEGN--------------WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 604 ~~~~~g~--------------~~~A~~~~~~~~~~~~ 626 (676)
+|...|+ +++|.+++++..+.++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 8887776 4666666666665443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.061 Score=53.19 Aligned_cols=208 Identities=11% Similarity=0.047 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcC----CCCcchHHHHHHHHHHcCChhHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCG---NMTYAEIIFQNFI----ERDLVLYNVMIACYAHHGHEEKAILLF 481 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 481 (676)
+++..+++.....-...+..+|..+.+.--..- ..+.....++++. ..-..+|..+++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 344455555544333334444444433221111 2444444555443 223457888888888888899999999
Q ss_pred HHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC---
Q 005802 482 EEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPT--- 557 (676)
Q Consensus 482 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 557 (676)
.+..+.+..+ +....++++..+|. ++.+-|.++|+.=..++|-. +.--...++.+...++-..|..+|++...
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988888 66777888886665 78999999999877765433 44455778888999999999999999872
Q ss_pred CC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC----ccHHHHHHHHHhcCChhHHHHHHH
Q 005802 558 EE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK----ARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 558 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
+| ....|..++.--..-|+...+..+-++.....|.+. ..-..+++-|.-.+.+.--..-++
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 33 346899999999999999999999999988877331 233455566666666554444333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00032 Score=61.01 Aligned_cols=93 Identities=13% Similarity=-0.093 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
...|..++..+...|++++|+..+++.. ..| ...++..+..++...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5667777888888899999999888875 222 23478888889999999999999999999999998888888888
Q ss_pred HHH-------hcCChhHHHHHHHHH
Q 005802 604 VYA-------AEGNWAEMGRIRKQM 621 (676)
Q Consensus 604 ~~~-------~~g~~~~A~~~~~~~ 621 (676)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788887665555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.70 E-value=8e-05 Score=52.57 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
+...+.+.|++++|.+.|+++. .+.++..+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566778888888888888877 334667888888888889999999999999988888764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00011 Score=53.40 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=52.7
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..|...++++.|..+++++++.+|+++..+..++.+|...|++++|.+.++...+..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 5678899999999999999999999999999999999999999999999999887655
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.4e-05 Score=43.94 Aligned_cols=31 Identities=48% Similarity=0.854 Sum_probs=23.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGV 255 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 255 (676)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.064 Score=51.90 Aligned_cols=124 Identities=17% Similarity=0.218 Sum_probs=78.4
Q ss_pred hcCC-HHHHHHHHhhcCC---CCcchHHHHH----HHHHH---cCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHH-
Q 005802 439 KCGN-MTYAEIIFQNFIE---RDLVLYNVMI----ACYAH---HGHEEKAILLFEEMLEKGIKPDAV----TFVAILSA- 502 (676)
Q Consensus 439 ~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~- 502 (676)
+.|. -++|.++++.+.+ .|..+-|... ..|.+ ...+.+-+.+-+-+.+.|+.|-.. .-+.|..|
T Consensus 391 ~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 3444 6777777776652 2433333322 12221 223444444445555678877533 33334333
Q ss_pred -hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHH
Q 005802 503 -FRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSF 567 (676)
Q Consensus 503 -~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 567 (676)
+...|++.++.-+-.-+. .+.|++.+|..+.-++....++++|..++.+.+ |+...+++-
T Consensus 471 yLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 456799999887776665 678999999999999999999999999999985 566555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00054 Score=52.85 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=46.4
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR 575 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 575 (676)
+...+...|++++|...++...+. .|+ ...+..+...+...|++++|.+.+++.. .+.+...+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 333444455555555555554421 222 2444445555555555555555555543 2223345555555566666
Q ss_pred CHhHHHHHHHHHHcccC
Q 005802 576 NAELAGEAEEKLLRLEG 592 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p 592 (676)
+++.|...++++.+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666655544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=54.06 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=40.1
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005802 471 HGHEEKAILLFEEMLEKGIK-PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 548 (676)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. ...|+ ......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666653221 12333334555666666666666666551 22222 23333445556666666666
Q ss_pred HHHHHh
Q 005802 549 IEFMKS 554 (676)
Q Consensus 549 ~~~~~~ 554 (676)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 665543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=8e-05 Score=43.20 Aligned_cols=31 Identities=45% Similarity=0.768 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGI 489 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 489 (676)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=7e-05 Score=53.52 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
+.|++++|+++|+++. .+.+...+..+..+|...|++++|..+++++....|+++..+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 3444455555544444 2334444444555555555555555555555555555433333
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=66.97 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
++..+..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++.....+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 445555555555566777777777777777777 4667777777777777777777777777665553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=61.62 Aligned_cols=134 Identities=12% Similarity=0.146 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH-hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA-FRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
.+|..++...-+.+..+.|.++|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 367888888888888999999999998543 2234444444433 333577788999999998754 445778889999
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCc---HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 538 LYGRANQLEKAIEFMKSIP--TEED---AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.+.+.|+.+.|..+|++.. .+++ ...|..++..-...|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999988 2222 35899999999999999999999999999988743
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=56.94 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=85.9
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYA 533 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 533 (676)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+...|++++|...+++... ..|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566777777888888888888888876433322 34666777778888888888888887764 3444 55666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
.+..++...|+...+..-++... ..+++|.+.++++.+.+|++ +..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66777777776665554333221 13678888899988888876 5455555544443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0026 Score=65.42 Aligned_cols=140 Identities=14% Similarity=0.030 Sum_probs=95.6
Q ss_pred CCcchHHHHHHHHHH--c---CChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHhhcc--------CcHHHHHHHHHHchh
Q 005802 456 RDLVLYNVMIACYAH--H---GHEEKAILLFEEMLEKGIKPDA-VTFVAILSAFRHC--------GSVEMGEKYFNSMTA 521 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 521 (676)
.+...|...+.+... . +....|..+|++.++ ..|+- ..+..+..++... ++...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 355566666655433 2 236688888888887 45663 3333333322111 223444555554332
Q ss_pred hcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 522 DYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 522 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
......+...|..+.-.+...|++++|...++++. ..|+...|..++..+...|+.++|.+.++++..++|.++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 21123346778888777778899999999999988 67788889999999999999999999999999999998853
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=50.36 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCcHhHHHHHHHHHhCCC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 005802 228 NTLISGYVQNGDAEEGLKLFVRMGENGV-RWNEHTFASALSACCGLR--------NVKCAKEIHSWVLKNGLISNPFVSS 298 (676)
Q Consensus 228 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (676)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .....+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 999999999999887543 2456788999999999999999999
Q ss_pred HHHHHHHhc
Q 005802 299 GIVDVYCKC 307 (676)
Q Consensus 299 ~l~~~~~~~ 307 (676)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999887653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.022 Score=54.26 Aligned_cols=128 Identities=18% Similarity=0.238 Sum_probs=71.0
Q ss_pred HHHHHhc-CCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----Hh-HHH
Q 005802 434 VDMYSKC-GNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-----AV-TFV 497 (676)
Q Consensus 434 ~~~~~~~-g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~-~~~ 497 (676)
...|... |+++.|.+.|++... .. ..++..+...+.+.|++++|.++|++....-...+ .. .|.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3344444 566666665554431 11 22455677788888999999999988876433222 11 223
Q ss_pred HHHHHhhccCcHHHHHHHHHHchhhc-CCCCC--HHHHHHHHHHHhhc--CCHHHHHHHHHhCCCCCcHH
Q 005802 498 AILSAFRHCGSVEMGEKYFNSMTADY-KISPE--TDHYACMIDLYGRA--NQLEKAIEFMKSIPTEEDAV 562 (676)
Q Consensus 498 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~ 562 (676)
..+-++...||+..|...++...... ++..+ -.....|+.++-.. ..+++|+.-|+.+. +.|+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 33345666788889988888876331 22222 34455666766543 46777777777775 33433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00029 Score=50.45 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHcccC
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR-NAELAGEAEEKLLRLEG 592 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 592 (676)
+...|..+...+...|++++|+..|++.. .+.++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35677788888888888888888888877 5557778888888888888 78999999999888877
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.17 Score=52.37 Aligned_cols=336 Identities=12% Similarity=0.110 Sum_probs=191.0
Q ss_pred hCCCCCcHhHHHH-----HHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHHhcCC-
Q 005802 252 ENGVRWNEHTFAS-----ALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCEN---MNYAESMLLLKGV- 322 (676)
Q Consensus 252 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~- 322 (676)
..|++.+..-|.. +++-+...+.+..|.++-..+...-... ..++.....-+.+..+ .+.+..+-.++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466665555443 4555666777777777766654322222 4566666666666532 2233333344444
Q ss_pred -CCchhHHHHHHHHHhcCCHHHHHHHHhccCCC--------CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh
Q 005802 323 -RNSFSISSMIVGYSLQGNMEEARRHFDSLTEK--------NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 323 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
.+..+|..........|+.+-|..+++.=+.. +..-+...+.-+...|+.+-...++-++ ..+ .+..
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhl-k~~---~~~s 579 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHL-KNK---LNRS 579 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHH-HHH---HHHH
Confidence 45667888888888888888888887754431 2223455566666777777777766665 221 0111
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH-HHhhc-----CCCCcchHHHHHHH
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEI-IFQNF-----IERDLVLYNVMIAC 467 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~-----~~~~~~~~~~l~~~ 467 (676)
.|.. ...+...|..+|....+.. +. ..+-+.|-...+...+-. .++.. ..+-..........
T Consensus 580 ~l~~------~l~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFM------TLRNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHH------HHHhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 1111 1112223333443333211 00 011122222222222111 11110 01111122223333
Q ss_pred HHHcCChh----------HHHHHHHHHHH-CCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 005802 468 YAHHGHEE----------KAILLFEEMLE-KGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMI 536 (676)
Q Consensus 468 ~~~~~~~~----------~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 536 (676)
+.+..... .-+++.+.+.. .|......+.+--+.-+...|+..+|.++-++.+ -||...|..-+
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKL 722 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHH
Confidence 44333211 11222222222 2333444556666667778899999999888774 48999999999
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 537 DLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
.+++..+++++-+++-++.. .|.-|.-++.+|.+.|+.++|..++-+.... .-.+.+|.+.|++.+|.+
T Consensus 723 ~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHH
Confidence 99999999999999988875 3677778889999999999999987665322 257889999999999988
Q ss_pred HHHH
Q 005802 617 IRKQ 620 (676)
Q Consensus 617 ~~~~ 620 (676)
.--+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 7543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.1 Score=50.03 Aligned_cols=102 Identities=14% Similarity=0.210 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 513 (676)
+.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++... +-++.-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44444455555555555555555555555555555555555544443211 112244555555555555555555
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFM 552 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 552 (676)
.++.++. + ..-+..|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-------~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-------D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-------h----HHHHHHHHHCCCHHHHHHHH
Confidence 5555431 1 22344555555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0019 Score=56.16 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=50.3
Q ss_pred HHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH-
Q 005802 497 VAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR- 572 (676)
Q Consensus 497 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~- 572 (676)
..+...+...|++++|...|+.......-.++ ..++..+..++...|++++|++.+++.. .+.....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 33344444445555555555544322100011 2344445555555555555555555544 1222333333333333
Q ss_pred ------HhCCHh-------HHHHHHHHHHcccCCCCccHHHHHHHHHhcCCh
Q 005802 573 ------LNRNAE-------LAGEAEEKLLRLEGNNKARYVQLANVYAAEGNW 611 (676)
Q Consensus 573 ------~~~~~~-------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 611 (676)
..|+++ +|..+++++...+|++ +......+...|++
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 445544 5556666666666653 23333444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=61.17 Aligned_cols=85 Identities=8% Similarity=-0.013 Sum_probs=45.6
Q ss_pred hhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC---CccHHHHHHHHHhcCCh
Q 005802 540 GRANQLEKAIEFMKSIP-TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN---KARYVQLANVYAAEGNW 611 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 611 (676)
.+.|++++|...|+... .-|+ +..+--++.+|...|+++.|...|+++++..|++ +..+..++.+|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 44455555555555544 1222 1244445555666666666666666666655554 33344445566666666
Q ss_pred hHHHHHHHHHHhC
Q 005802 612 AEMGRIRKQMRGM 624 (676)
Q Consensus 612 ~~A~~~~~~~~~~ 624 (676)
++|.++++.+.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.024 Score=47.63 Aligned_cols=132 Identities=10% Similarity=0.014 Sum_probs=94.3
Q ss_pred CCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---cHHHH
Q 005802 489 IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE---DAVIL 564 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~ 564 (676)
..|+...-..|..+....|+..+|...|++...- -+.-|....-.+..+....++...|...+++.- .+| .+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666677777888888888888888877552 334456777777777888888888887777655 222 33445
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
..+...+...|.+.+|+..|+.++...|. +......+..+.++|+.++|..-+..+-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 55677888888888888888888888775 5556666778888888887776555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=52.24 Aligned_cols=87 Identities=17% Similarity=-0.048 Sum_probs=56.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CC---C-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC---CCccHHHHHHHHH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP-TE---E-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN---NKARYVQLANVYA 606 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~-~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 606 (676)
+..++-..|+.++|+.++++.. .. + -...+..+..++...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4555666677777777776655 11 1 1224455666777777777777777777777666 5555666677777
Q ss_pred hcCChhHHHHHHHHH
Q 005802 607 AEGNWAEMGRIRKQM 621 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~ 621 (676)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=62.10 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEE
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIH 642 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (676)
++..+..++.+.+++..|+...++.++++|+|....+.-+.+|...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~------------------ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL------------------ 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh------------------
Confidence 45566667778888888888888888888888888888888888888888888888877642
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 005802 643 IFTVGDVSHPKTNAIYSVLAIFTGELYE 670 (676)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (676)
+|.+..+..+|..+.+++++
T Consensus 321 --------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 --------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred --------CCCcHHHHHHHHHHHHHHHH
Confidence 67777777777777777654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0079 Score=57.07 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=88.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH--HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHH--------
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS--AFRHCGSVEMGEKYFNSMTADYKISPETDHYACM-------- 535 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------- 535 (676)
.++.-.|++++|.+.-...++.. ++ ..+..+++ ++...++.+.|...|++.. .+.|+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 44555677777776655554421 11 11222222 2344566677777776665 444552221111
Q ss_pred -----HHHHhhcCCHHHHHHHHHhCC-CCC-----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 536 -----IDLYGRANQLEKAIEFMKSIP-TEE-----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 536 -----~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
..-..+.|++.+|.+.+.+.+ ..| +...|.....+..+.|+..+|+.-.+.+.+++|.-...+..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 222456677777777777766 333 333444444455677777777777777777777766677777777
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 005802 605 YAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 605 ~~~~g~~~~A~~~~~~~~~ 623 (676)
+...++|++|.+.++...+
T Consensus 331 ~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777777777777766644
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0026 Score=62.66 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhh
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
|..++++.|...|..+.++.++..=...|+-||..|++.|+..+.+.|++..|.++...|..+
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 344555555566666666665555555566666666666666666666666665555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0057 Score=51.19 Aligned_cols=107 Identities=13% Similarity=0.136 Sum_probs=94.1
Q ss_pred hhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC--CC
Q 005802 521 ADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN--NK 595 (676)
Q Consensus 521 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~ 595 (676)
+.....|+...-..|..++.+.|+..||...|++.. ...|+..+..+.++....++...|...++++.+.+|. +|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 333567888888899999999999999999999987 5568889999999999999999999999999999876 67
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
.....++.+|...|++.+|...++-...-.++
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 78889999999999999999999988775543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0027 Score=48.43 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHhhcc--------CcHHHHHHHHHHchhhcCCCCCHHHH
Q 005802 462 NVMIACYAHHGHEEKAILLFEEMLEKGI-KPDAVTFVAILSAFRHC--------GSVEMGEKYFNSMTADYKISPETDHY 532 (676)
Q Consensus 462 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~~~ 532 (676)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+..+. +++...+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666777999999999999999999 89999999999876653 2455678889999877 899999999
Q ss_pred HHHHHHHhh
Q 005802 533 ACMIDLYGR 541 (676)
Q Consensus 533 ~~l~~~~~~ 541 (676)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00013 Score=42.97 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=30.8
Q ss_pred HHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
++++++++|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.24 Score=50.68 Aligned_cols=202 Identities=11% Similarity=0.056 Sum_probs=116.4
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHhccCCC-CCcchHHHHHHHH----------HhcCChHHHHHHhccCCCCCcccH
Q 005802 22 TLTTITTNQLIHIYSKHNLLRESRKLFDEMPE-RNVFSWNTIISAC----------IKSHDLKQARSLFDSSPHKDLVTY 90 (676)
Q Consensus 22 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~----------~~~g~~~~A~~~~~~~~~~~~~~~ 90 (676)
.|++..|..|...-.+.-.++.|...|-+... +.+.....|-..+ +--|++++|++++-.|.+.|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA-- 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA-- 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh--
Confidence 47777888887776666677777777766543 2222222221111 1237788888877766655432
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCC----hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHH
Q 005802 91 NSMLCGYINAEGYEADALKLFIEMQSADEHIRMD----EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSL 166 (676)
Q Consensus 91 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (676)
+..+.+.|++. .+.+++.. .|-..| ...++.+-..++....++.|.+.+.... -....
T Consensus 767 ---ielr~klgDwf-rV~qL~r~-----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~ 828 (1189)
T KOG2041|consen 767 ---IELRKKLGDWF-RVYQLIRN-----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG---------DTENQ 828 (1189)
T ss_pred ---HHHHHhhhhHH-HHHHHHHc-----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------chHhH
Confidence 33333444444 44443322 111111 1245556666666666666666655422 22345
Q ss_pred HHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHH
Q 005802 167 IDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKL 246 (676)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 246 (676)
+.+|.+...+++-..+...+++ +....-.+.+++...|.-++|.+.+-+.. .| ...+..|...++|.+|.++
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe--~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~p-----kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE--DSELLPVMADMFTSVGMCDQAVEAYLRRS-LP-----KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc--ccchHHHHHHHHHhhchHHHHHHHHHhcc-Cc-----HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666544 45555667788888888888887776655 33 3455667777778888777
Q ss_pred HHHHH
Q 005802 247 FVRMG 251 (676)
Q Consensus 247 ~~~m~ 251 (676)
-+...
T Consensus 901 aq~~~ 905 (1189)
T KOG2041|consen 901 AQRFQ 905 (1189)
T ss_pred HHhcc
Confidence 66543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.17 Score=48.68 Aligned_cols=112 Identities=10% Similarity=0.084 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHc
Q 005802 392 ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHH 471 (676)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 471 (676)
..+.+..+.-|...|....|..+-... . -|+...|-..+.+++..++|++-.++-.. +.+++-|...+..|.+.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKY 250 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHC
Confidence 345566667777778877777765443 3 47888888899999999999988887654 56788999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 472 GHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
|+..+|..++.+ ++ +..-+..|.+.|++.+|.+.--+.
T Consensus 251 ~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 251 GNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999988876 12 244566678889998888775544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0023 Score=63.00 Aligned_cols=117 Identities=12% Similarity=0.133 Sum_probs=86.4
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHhhCCCCC-----CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHH
Q 005802 191 NLISKNAMVAACCREGEMEMALKTFWRQPELN-----DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASA 265 (676)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 265 (676)
+......+++.+....+++.+..++-+....| -..+..++|+.|.+.|..+.++.+++.=...|+=||..|++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 33444555556666666666666665444332 2345678999999999999999999988888999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 005802 266 LSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKC 307 (676)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (676)
|..+.+.|++..|.++..+|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999998888877766666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.28 Score=50.20 Aligned_cols=186 Identities=14% Similarity=0.063 Sum_probs=88.6
Q ss_pred CCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHH----------HHHHHhcCChhHHHHHHhhCCCCCCeee
Q 005802 157 DASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAM----------VAACCREGEMEMALKTFWRQPELNDAVS 226 (676)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 226 (676)
.|.+..|..|.......-.++.|...|-++..-+.......| ...-+-.|++++|.+++-.+. ..|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~d-rrDL-- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDAD-RRDL-- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccc-hhhh--
Confidence 455566666666666666666666666555442222111111 112223467777777776665 3332
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----HhHHHHHHHHHhCCCChHHHHHHHHH------------------
Q 005802 227 WNTLISGYVQNGDAEEGLKLFVRMGENGVRWN----EHTFASALSACCGLRNVKCAKEIHSW------------------ 284 (676)
Q Consensus 227 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~------------------ 284 (676)
.|....+.|+|-.+.++++.= |-.-| ...++.+...++....++.|.+.|..
T Consensus 766 ---Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 766 ---AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFG 839 (1189)
T ss_pred ---hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhh
Confidence 234444555555554444321 11011 12233333333333333333333322
Q ss_pred -HH--HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 005802 285 -VL--KNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNV 356 (676)
Q Consensus 285 -~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 356 (676)
+. ...++.+....-.+.+++.+.|.-++|.+.+-+-..|. .-+..|...++|.+|.++-++..-|.+
T Consensus 840 ~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 840 ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 11 11234455555566666666666666665554444432 233445556666666666665554433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.003 Score=59.87 Aligned_cols=129 Identities=11% Similarity=0.115 Sum_probs=102.1
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR-ANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
.+|..+++...+.+..+.|..+|.+.++. -..+..+|...+..-.+ .++.+.|.++|+... .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888889999999999999743 22345666666666444 566777999999988 67788899999999
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCC---ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNK---ARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+...++.+.|..+|++++...|.+. .+|..++.--.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999866644 57888888889999999999999988774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0061 Score=57.63 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=68.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHc---hhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCcHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSM---TADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--------TEEDAV 562 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~ 562 (676)
.|..|.+.|.-.|+++.|+...+.- .+++|-... ...+..|..+++-.|+++.|.+.++... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444555555556666665543321 122232222 4455556666666666666666655432 112233
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc------cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL------EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.--+|.++|....++++|+.+..+=+.+ .-.....+..|+.+|...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4445566666666666666666554433 112344566677777777777777666655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=63.83 Aligned_cols=67 Identities=13% Similarity=-0.113 Sum_probs=47.9
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR---YVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+.++..+..+..+|...|++++|+..++++++++|+++.. |..++.+|...|+.++|+..++++.+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455667777777777777777777777777777776643 777777777777777777777777664
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.15 Score=48.84 Aligned_cols=87 Identities=16% Similarity=0.046 Sum_probs=58.2
Q ss_pred HHHHcCChhHHHHHHHHHHH---CCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc
Q 005802 467 CYAHHGHEEKAILLFEEMLE---KGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA 542 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 542 (676)
-..+.|++..|.+.|.+.+. .+.+|+...|.....+..+.|+..+|+.-.+... .+.|. ...|..-..++.-.
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHH
Confidence 34667888888888887775 2344455556666666777888888888777765 44444 44444445566667
Q ss_pred CCHHHHHHHHHhCC
Q 005802 543 NQLEKAIEFMKSIP 556 (676)
Q Consensus 543 g~~~~A~~~~~~~~ 556 (676)
++|++|++-+++..
T Consensus 335 e~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888777665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=48.08 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=51.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
-..|.+.+++++|++.++.+. .+.++..|.....++...|++++|...++++.+..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888887 45567777788888899999999999999999988877655443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0045 Score=51.17 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=53.3
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCC
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRN 576 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 576 (676)
..-+...|++++|..+|+.+. .+.|. ..-|-.|.-++-..|++++|++.+..+. .+.++..+-.+..++...|+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 333455666666666666665 33444 4455566666666666666666666655 34455566666666666666
Q ss_pred HhHHHHHHHHHHcc
Q 005802 577 AELAGEAEEKLLRL 590 (676)
Q Consensus 577 ~~~a~~~~~~~~~~ 590 (676)
.+.|...|+.++..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666655
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.032 Score=53.16 Aligned_cols=111 Identities=15% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHc-CChhHHHHHHHHHHH----CCCCCC--HhHHHHHHHHhhcc
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHH-GHEEKAILLFEEMLE----KGIKPD--AVTFVAILSAFRHC 506 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~ 506 (676)
+..|...|++..|-..+. .+...|... |++++|++.|++..+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 344555555555544433 344455555 666666666666543 22 111 22344455556666
Q ss_pred CcHHHHHHHHHHchhhcC----CCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 507 GSVEMGEKYFNSMTADYK----ISPET-DHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~----~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|++++|.++|++.....- .+++. ..+...+-++...|+...|.+.+++..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666543210 01111 122233444555566666666666543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.28 Score=47.70 Aligned_cols=190 Identities=9% Similarity=0.062 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcc-------hHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHh
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLV-------LYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAV 494 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-------~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~ 494 (676)
.++..++....+.++...|.+.+.-+. .|+.. +-..+-+..+. .-+...=+.+|+......+.-. .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-Q 377 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-Q 377 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-H
Confidence 355666666677777777776665443 33222 11112222221 1223334455655555432211 1
Q ss_pred HHHHHHHH---hhccCc-HHHHHHHHHHchhhcCCCCC-HHHHHHHH----HHHhh---cCCHHH---HHHHHHhCCCCC
Q 005802 495 TFVAILSA---FRHCGS-VEMGEKYFNSMTADYKISPE-TDHYACMI----DLYGR---ANQLEK---AIEFMKSIPTEE 559 (676)
Q Consensus 495 ~~~~ll~~---~~~~g~-~~~a~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~---~g~~~~---A~~~~~~~~~~~ 559 (676)
....|+.+ +-+.|. -++|+++++...+ +.|. ...-+.+. ..|.. ...+.+ -+.++++...+|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 12223322 333444 7888888888863 3333 33333222 12221 122222 233344544444
Q ss_pred ----cHHHHHHHHHH--HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 560 ----DAVILGSFLNV--CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 560 ----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+...-+.+..+ +..+|++.++.-...-+.+..| ++.+|..+|-++....++++|..++..+.
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34455556554 5789999999999999999999 79999999999999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0051 Score=57.13 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=71.9
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSF 567 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l 567 (676)
..|...+....+.|++++|...|+.+...+.-.+- ...+-.+..+|...|++++|...|+.+. ..| .+..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555454445668888888888888765322111 3466677888888888888888888876 222 34455566
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
+.++...|+.+.|...++++++..|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6778888999999999999999888864
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.078 Score=48.95 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=46.7
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCc---cHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKA---RYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+...|.+.|.+..|..-++.+++..|+.+. ....++.+|...|..++|..+.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 344678899999999999999999887544 56788899999999999999887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.11 Score=52.49 Aligned_cols=84 Identities=13% Similarity=0.089 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHH--------
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVM-------- 464 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-------- 464 (676)
.+...+...+-+...+..|.++|..|-+. .++++.+...+++++|..+-+..++--...|...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 34444444445556666777777665442 3567778888888888888888775322222222
Q ss_pred -----HHHHHHcCChhHHHHHHHHHH
Q 005802 465 -----IACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 465 -----~~~~~~~~~~~~A~~~~~~m~ 485 (676)
-++|.+.|+-.+|..+++++-
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 234455555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00088 Score=42.52 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHH
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLAN 603 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 603 (676)
.++..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788889999999999999999999999999988887764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.34 Score=46.10 Aligned_cols=241 Identities=15% Similarity=0.080 Sum_probs=155.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCCHhH----HHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 005802 368 KAQNCEALFDLLSEFVTKEGVVTDALI----LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNM 443 (676)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (676)
-.|+++.|.+-|+.|+. |..| +..|.-...+.|+.+.|..+-+...... +.-.....+.+...|..|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35777777777777721 2222 2223333346667777666665555443 33345667788888999999
Q ss_pred HHHHHHHhhcC-----CCCcc--hHHHHHHHHH---HcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHH
Q 005802 444 TYAEIIFQNFI-----ERDLV--LYNVMIACYA---HHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMG 512 (676)
Q Consensus 444 ~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 512 (676)
+.|+++.+.-. ++++. .-..|+.+-. -.-+...|...-.+..+ +.||.. .-.....++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99998887543 34432 1122222211 12245555555444444 667743 333445778999999999
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHH----HHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 513 EKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAI----EFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
-.+++.+-+. .|.+.++..++ +.+.|+..... +-++.|. +.+......+..+....|++..|..--+.+.
T Consensus 283 ~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 9999999744 56655543333 34555543221 2234443 5567778888889999999999999999999
Q ss_pred cccCCCCccHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 005802 589 RLEGNNKARYVQLANVYAAE-GNWAEMGRIRKQMRGM 624 (676)
Q Consensus 589 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 624 (676)
...|. .++|..|+++-... |+-.++...+-+..+.
T Consensus 357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 98887 57899999998766 9999999998877654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.39 Score=46.65 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=89.9
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHH-HHHH
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKG-IKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDH-YACM 535 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l 535 (676)
..+|..++..-.+..-.+.|..+|-+..+.| +.++...+++++..++. |++.-|..+|+.=... -||... -...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3456667777677777777888888888777 55667777777775544 6777788887765443 244333 3355
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+..+.+-++-+.|..+|+... ... -...|..++.--..-|+...+..+-+++.+..|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 666777788888888887654 122 24567777777777788888887777777777753
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.36 Score=45.98 Aligned_cols=254 Identities=15% Similarity=0.123 Sum_probs=165.7
Q ss_pred hHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH--HHhhcChhHHHHHHHHHHHcCCCCChhH--HH
Q 005802 358 VWTALFSGYVK--AQNCEALFDLLSEFVTKEGVVTDALILVILLGA--CALQAALHPGKEIHAYILRMGVQMDKKL--IS 431 (676)
Q Consensus 358 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 431 (676)
.|.+|-.++.. .|+-..|.+.-.+ ...-+..|...+..++.+ -.-.|+.+.|.+-|+.|.+. |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~--~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTAR--ASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHH--HHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 45566666554 4666777666655 233455566566666654 34679999999999999762 22222 22
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHh--HHHHHHHHhh-
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKG-IKPDAV--TFVAILSAFR- 504 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~- 504 (676)
.|.-.--+.|..+.|...-+..-. | -.-.+.+.+...|..|+++.|+++++.-++.. +.++.. .-..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333344568889988888776642 2 34477889999999999999999999877632 445533 2223333221
Q ss_pred --ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhH-
Q 005802 505 --HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAEL- 579 (676)
Q Consensus 505 --~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~- 579 (676)
-..+...|...-.+.. ++.|+ ...-..-..+|.+.|+..++-.+++.+= ..|.+.++..... .+.|+...
T Consensus 239 s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~d 313 (531)
T COG3898 239 SLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALD 313 (531)
T ss_pred HHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHH
Confidence 1235666666555443 67788 3334445688999999999999999876 6788877754332 34454322
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
-.+-.+++..+.|++......++.+-...|++..|..--+..
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 123334455668999999999999998999888776544443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.032 Score=44.49 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=66.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHh
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYG 540 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 540 (676)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778999999999999998886655 34566677788889999999999998876532111 1222233455777
Q ss_pred hcCCHHHHHHHHHhCC
Q 005802 541 RANQLEKAIEFMKSIP 556 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~ 556 (676)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999988875543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.085 Score=51.07 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=99.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC-------CcchHHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNFIER-------DLVLYNVMIACYAH---HGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
..++-.|....+++...++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677777777777777777643 11122233445556 788999999988866666677788887777
Q ss_pred HHhhc---------cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC-HH---HHHHHH---HhCC-------C
Q 005802 501 SAFRH---------CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ-LE---KAIEFM---KSIP-------T 557 (676)
Q Consensus 501 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-------~ 557 (676)
+.|-. ....++|...|.+.- .+.|+..+=-.++..+.-.|. .+ +..++- .... .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 234677888887554 555663322222333333332 21 222222 1111 2
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
..+-..+.+++.++.-.|++++|.+.++++.++.|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2345566788999999999999999999999987664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=57.48 Aligned_cols=66 Identities=15% Similarity=-0.017 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 559 EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.|+.....++.+....++++.|...++++..++|+.+..|...+.+..-.|+.++|.+.+++..+.
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 344444444444444444555555555555555555555555555555555555555555554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0012 Score=48.53 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc---cC-C---CCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL---EG-N---NKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
++..+..+|...|++++|+..+++++++ .+ + -..++..++.+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555666666666666666666544 11 1 13456677777777777777777777654
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.038 Score=49.57 Aligned_cols=50 Identities=12% Similarity=-0.023 Sum_probs=38.3
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCc---cHHHHHHHHHhcCChhHHHH
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKA---RYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 616 (676)
+...|.+.|.+..|..-++.+++..|+.+. ....|+.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345678899999999999999999998644 46778888999998885543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.076 Score=47.40 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhc----CCCCCHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADY----KISPETDHYACM 535 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 535 (676)
..+.++..+.-.|.+.-.+..+++.++...+.++.....|.+.-.+.||.+.|..+|+...+.. ++.-........
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456667777788888888889998887656677778888888889999999999999775442 222222333334
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
...|.-++++.+|...+.+++ .+.++...++-.-+..-.|+...|++..+.+.+..|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 455667788888888888887 344556666555555667888999999999998888743
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0094 Score=51.81 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=71.8
Q ss_pred CCCeeeHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCC----------------CChHHHH
Q 005802 221 LNDAVSWNTLISGYVQN-----GDAEEGLKLFVRMGENGVRWNEHTFASALSACCGL----------------RNVKCAK 279 (676)
Q Consensus 221 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 279 (676)
..+-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+. .+-+.|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 55667777777777654 55666677788888999999999999999887652 2346799
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 005802 280 EIHSWVLKNGLISNPFVSSGIVDVYCKCEN 309 (676)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 309 (676)
+++++|...|+.||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999988765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.11 Score=52.45 Aligned_cols=226 Identities=10% Similarity=0.069 Sum_probs=109.4
Q ss_pred hHHHHHHHHHccCCcHHHH--HHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCC-chhhHHH-----H
Q 005802 127 TVTSTLNLCVKLLNVGFGR--QLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEV-NLISKNA-----M 198 (676)
Q Consensus 127 ~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~-----l 198 (676)
.++..=++|.+.++..-.+ .-++.+++.|-.|+.. .+...++-.|++.+|.++|.+..... -...|+- +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~ 676 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDY 676 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHH
Confidence 3444455666666554333 3355677777777765 45667778899999999987765421 1122221 1
Q ss_pred HHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCChhHHHHHHHH------HHhCCCC---CcHhHHHHHHHH
Q 005802 199 VAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGDAEEGLKLFVR------MGENGVR---WNEHTFASALSA 268 (676)
Q Consensus 199 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~g~~---p~~~~~~~ll~~ 268 (676)
..-+...|.-++-..+.++-.. ..|+.--.+....+..+|+.++|.++.-+ +.+.+-+ .+..+...+...
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATY 756 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 1222333333332222221110 11111122333344455655555544211 1111111 122333334444
Q ss_pred HhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 005802 269 CCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHF 348 (676)
Q Consensus 269 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 348 (676)
+.+...+..|.++|..|-.. ..+++.....+++++|..+-++.++--...|....+-++...++++|.+
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk-- 825 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK-- 825 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH--
Confidence 44455555566665554221 2345555566666666655555554333334444444444444444443
Q ss_pred hccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 349 DSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 349 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
+|.+.|+..+|.++++++
T Consensus 826 ----------------AfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 826 ----------------AFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred ----------------HHHHhcchHHHHHHHHHh
Confidence 455667777777777775
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.047 Score=48.64 Aligned_cols=133 Identities=9% Similarity=0.038 Sum_probs=105.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-----CcHHHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---TE-----EDAVILGS 566 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-----~~~~~~~~ 566 (676)
..+.++..+.-.|.+.-...++++++++ ..+.++.....|.+.-.+.|+.+.|...|++.. .. ....+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4456777777788898899999999875 434457777888888899999999999999654 11 22223334
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNR 628 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 628 (676)
....+..++++..|...+.+....+|.++...+.-+-++.-.|+..+|++.++.|++.-+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 44456778899999999999999999999998888888888999999999999999876644
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.75 Score=47.83 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChH
Q 005802 294 PFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCE 373 (676)
Q Consensus 294 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 373 (676)
..+.+..+.-+...|+..+|.++-.+..-||...|-.-+.++...++|++-.++-+.... +.-|..++.+|.+.|+.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKD 761 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHH
Confidence 334444455555556666666555555555555555555555555555554444443332 344445555555555555
Q ss_pred HHHHHHH
Q 005802 374 ALFDLLS 380 (676)
Q Consensus 374 ~a~~~~~ 380 (676)
+|.+++.
T Consensus 762 EA~KYip 768 (829)
T KOG2280|consen 762 EAKKYIP 768 (829)
T ss_pred HHhhhhh
Confidence 5555444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=50.67 Aligned_cols=89 Identities=18% Similarity=0.372 Sum_probs=70.2
Q ss_pred CCCcchHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc----------------CcHHHHH
Q 005802 455 ERDLVLYNVMIACYAH-----HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHC----------------GSVEMGE 513 (676)
Q Consensus 455 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------g~~~~a~ 513 (676)
..+-.+|..+++.|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4466667777777664 466777777888999999999999999999877542 3456789
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCC
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQ 544 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 544 (676)
+++++| +.+|+.||..++..|++.+++.+.
T Consensus 124 ~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 999999 455999999999999999987764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.031 Score=45.46 Aligned_cols=93 Identities=14% Similarity=0.018 Sum_probs=63.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CC--C-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc---HHHHHHHH
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIP--TE--E-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR---YVQLANVY 605 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~--~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~ 605 (676)
.-.....+.|++++|.+.|+.+. .+ | ....-..++.++...++++.|...+++.++++|.++.+ +...|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 33455567788888888887776 11 1 34455667778899999999999999999998887664 33444444
Q ss_pred HhcCC---------------hhHHHHHHHHHHhCCC
Q 005802 606 AAEGN---------------WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 606 ~~~g~---------------~~~A~~~~~~~~~~~~ 626 (676)
..... ..+|...|+.+.+.-+
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 44443 5667777777665544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.57 Score=45.54 Aligned_cols=124 Identities=17% Similarity=0.228 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcChhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchH-HHHHHHHHH
Q 005802 395 LVILLGACALQAALHPGKEIHAYILRMG-VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLY-NVMIACYAH 470 (676)
Q Consensus 395 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~-~~l~~~~~~ 470 (676)
|...++...+..-++.|+.+|-+..+.+ +.++..++++++..++ .|+...|..+|+--. -+|...| +..+.-+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3344444445555566666666666655 4455555566555544 345555555555332 2333332 223444455
Q ss_pred cCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHch
Q 005802 471 HGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMT 520 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 520 (676)
.++-+.|..+|+..+.+ +..+ ...|..+|..-..-|+...+..+=+++.
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 55555555555543332 1112 2345555555555555555555555554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=49.97 Aligned_cols=91 Identities=13% Similarity=0.029 Sum_probs=71.1
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCcH-----HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 537 DLYGRANQLEKAIEFMKSIP--TEEDA-----VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~--~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
.-+.+.|++++|..-|.++. .++-+ ..|..-..+..+.+.++.|+.-..++++++|........-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44566778888877777665 33322 233333446778899999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHHHhCCCc
Q 005802 610 NWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~~~ 627 (676)
++++|++-++++.+..+.
T Consensus 183 k~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPS 200 (271)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 999999999999876554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=56.37 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
..++..|.-++.+.+++.+|++...+.. .+++.-.+-.=..+|...|+++.|+..|+++++..|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4457778889999999999999998887 56778788888889999999999999999999999999999999988888
Q ss_pred hcCChhHH-HHHHHHHHhC
Q 005802 607 AEGNWAEM-GRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A-~~~~~~~~~~ 624 (676)
+...+++. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 87776655 7889888764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.06 Score=49.55 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=81.0
Q ss_pred CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc---CCHHHHHHHHHhCC--CCCcHHH
Q 005802 490 KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA---NQLEKAIEFMKSIP--TEEDAVI 563 (676)
Q Consensus 490 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~--~~~~~~~ 563 (676)
+-|...|..|..+|...|+.+.|...|....+ +.|+ +..+..+..++..+ ....++..+|+++. .+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 34678899999999999999999999998864 3343 67777777766543 35678889999888 4446667
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
...|...+...|++.+|...++.+.+..|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 777777899999999999999999999777644
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0022 Score=47.15 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCC---c-HHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP-----TEE---D-AVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
..+++.+...|...|++++|++.+++.. ..+ + ..++..+..++...|++++|++.++++.++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777777777777776654 221 1 345667777788888888888888887654
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.68 Score=42.78 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMK 553 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 553 (676)
.-|.+.|.+..|..-++.+.+.+.-.|. ......++.+|.+.|..++|.++..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3455556666666666666555433333 4444555566666666666555443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=53.21 Aligned_cols=61 Identities=11% Similarity=-0.042 Sum_probs=41.8
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCC---CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNN---KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
|+.++...|+++.|...|..+.+..|++ |..+..|+.+..+.|+.++|..+|+.+.++-++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 5556667777777777777777665554 345667777777777777777777777766554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.16 Score=45.56 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=74.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKPD--AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 540 (676)
.....+...|++.+|.+.|+++........ ......++.++.+.|+++.|...++.....+.-.|.. .+.....+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHH
Confidence 344555667777777777777776421111 2334455666777777777777777776665444432 1112222211
Q ss_pred hcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc-----------------cHHHHHH
Q 005802 541 RANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA-----------------RYVQLAN 603 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~ 603 (676)
......... ......+...+|...++.+++..|+++- .-..++.
T Consensus 89 ~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111100 0011223345566666666666666533 2245678
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC
Q 005802 604 VYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.|.+.|++..|..-++.+.+.-+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHST
T ss_pred HHHHcccHHHHHHHHHHHHHHCC
Confidence 89999999999999999887533
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.33 Score=38.45 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=83.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 547 (676)
+.-.|.+++..++..+.... .+..-++-++--....-+-+-..+.++..-+-+.+.|- .....++.+|.+.|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence 34467888888888877753 23344444444333444445556666665332222211 112234444444443
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 548 AIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 548 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+...++..+.....+|.-++-.+++..+.+-+..+|.....++.+|.+.|+..+|.++++++-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445556677888999999999999988766667899999999999999999999999999998875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=2 Score=45.61 Aligned_cols=181 Identities=14% Similarity=0.106 Sum_probs=106.4
Q ss_pred hhhHHHHHhhhccchHHHHHhhhhcCCCCc--hhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCC
Q 005802 162 AVSSLIDMYSKCRCYEEACRVFEGCTEEVN--LISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGD 239 (676)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (676)
....-++.+.+...++-|..+...-..+++ ........+-+.+.|++++|..-+-+-...- --..+|.-|....+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l---e~s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL---EPSEVIKKFLDAQR 412 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC---ChHHHHHHhcCHHH
Confidence 344556666777777777777665433221 1223334455667788888877775433111 12456667777777
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 005802 240 AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 240 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 319 (676)
...-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+... .|.. .+-....+..+.+.+-.+.|..+-..
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 77788888888888875 44445678888888888887766665433 2211 11123345555555656666544333
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 320 KGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
... +...... .+-..+++++|.+.+..++-
T Consensus 489 ~~~-he~vl~i---lle~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 489 FKK-HEWVLDI---LLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred hcc-CHHHHHH---HHHHhcCHHHHHHHHhcCCH
Confidence 322 2222222 23446788888888888764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.037 Score=43.43 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=67.5
Q ss_pred HHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-cCCCC---ccHHHHHHHHHhcCC
Q 005802 537 DLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL-EGNNK---ARYVQLANVYAAEGN 610 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~---~~~~~l~~~~~~~g~ 610 (676)
-++...|+++.|++.|.... .+..+..|+.-..++.-+|+.++|+.-+++++++ .|... ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45667788888888887766 4557778888888888888888888888888887 33322 246677778888888
Q ss_pred hhHHHHHHHHHHhCCC
Q 005802 611 WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 611 ~~~A~~~~~~~~~~~~ 626 (676)
-+.|+.-|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888887776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0088 Score=56.59 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc------cCCCC
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--------TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL------EGNNK 595 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~ 595 (676)
..|..|...|.-.|+++.|+..-+.-. .......+..+.+++.-.|+++.|.+.|++...+ ....+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 445666666667789999987754322 1123446778889999999999999999987654 22346
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
.....|+++|.-...+++|+.+..+=.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999998876543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.18 E-value=1.8 Score=44.18 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=122.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
+...|...++.-.+.|+.+.+.-+|+...-|- ...|-..+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45567777788888999999999999887552 234555555555568888888777666553222222222222223
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHH---HHHHhCC-CCCcHHHHHHHH----H-HHH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAI---EFMKSIP-TEEDAVILGSFL----N-VCR 572 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~----~-~~~ 572 (676)
+...|++..|..+++...++ . |+ ...-..-+....+.|..+.+. +++.... ...+......+. + .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999875 3 66 333334456667888888888 5555544 222333332222 2 355
Q ss_pred HhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
..++.+.|..++.++.+..|++...|..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999988877766
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.28 Score=50.35 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCH-----hHHHHHHHHhh----ccCcHHHHHHHHHHchhhcCCCCCHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKG-IKPDA-----VTFVAILSAFR----HCGSVEMGEKYFNSMTADYKISPETD 530 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 530 (676)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++ .....+.|.++++.+..+ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555566677777777776655421 22111 12333333332 256788899999999865 47755
Q ss_pred HHH-HHHHHHhhcCCHHHHHHHHHhCCC------CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH-HHH
Q 005802 531 HYA-CMIDLYGRANQLEKAIEFMKSIPT------EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV-QLA 602 (676)
Q Consensus 531 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 602 (676)
.|. --.+.+...|+.++|++.|+++.. +-....+-.+.+.+....++++|...+.++.+.+.-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 554 335667788999999999997661 113345566777888999999999999999998777666655 444
Q ss_pred HHHHhcCCh-------hHHHHHHHHHHhC
Q 005802 603 NVYAAEGNW-------AEMGRIRKQMRGM 624 (676)
Q Consensus 603 ~~~~~~g~~-------~~A~~~~~~~~~~ 624 (676)
.++...|+. ++|.+++++....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 556778888 8888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=48.35 Aligned_cols=61 Identities=23% Similarity=0.206 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+..++..+...|+++.|...+++++..+|-+...|..+..+|...|+..+|.++++.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555666788899999999999999999999999999999999999999999999998865
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.49 Score=46.79 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=98.0
Q ss_pred ChhHHHHHHHHHHH-CCCCCC-HhHHHHHHHHhhc---------cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHh
Q 005802 473 HEEKAILLFEEMLE-KGIKPD-AVTFVAILSAFRH---------CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYG 540 (676)
Q Consensus 473 ~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 540 (676)
..+.|+.+|.+... +.+.|+ ...|..+..++.. ..+..+|.++.++.. .+.|+ ......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 35677888888872 224565 3344433333221 334566777777665 33444 777777888888
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH--HHHHHHHhcCChhHHHH
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV--QLANVYAAEGNWAEMGR 616 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 616 (676)
-.|+.+.|..+|++.. .+....+|......+.-.|+.++|.+.++++++++|.-...-. ..++.|+. ...++|++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 8888999999999988 4446668888888889999999999999999999998654433 33334554 45677777
Q ss_pred HHH
Q 005802 617 IRK 619 (676)
Q Consensus 617 ~~~ 619 (676)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 663
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.08 Score=42.72 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=38.1
Q ss_pred CCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 488 GIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 488 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
...|+..+..+++.+|+..|++..|.++++...+.|+++-+...|..|+.=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456777777888888888888888888888887777776667777766653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=3 Score=44.75 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=54.1
Q ss_pred CcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
.+.+.|..++.......++.+. ...+..++......+..++|...+.... ...+...+.--+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 3445566666555333233332 2223333333333322445555555543 112333333333333455566655555
Q ss_pred HHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
+..+-......+....-++.++...|+.++|..+++.+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55544333334445556666655566666666666655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.56 Score=43.21 Aligned_cols=120 Identities=8% Similarity=0.078 Sum_probs=79.7
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHH---HHHHHHHHhCCH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILG---SFLNVCRLNRNA 577 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~ 577 (676)
.....|++.+|..+|+..... .|. ...-..|+.+|...|+.+.|..++..++..-....+. .-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 355678888888888877643 233 5566677888888888888888888887332222222 233344444444
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.+...+-.+ ...+|+|...-..|+..|...|+.++|.+.+=.+.++.
T Consensus 220 ~~~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 444443333 33588888888889999999999999888776666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.7 Score=40.01 Aligned_cols=196 Identities=18% Similarity=0.142 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC-----CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFI-----ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
..........+...+.+..+...+.... ......+......+...+++..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455555666666677776666665543 22334555555666666777777777777766433321 12222222
Q ss_pred -HhhccCcHHHHHHHHHHchhhcCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC-cHHHHHHHHHHHHH
Q 005802 502 -AFRHCGSVEMGEKYFNSMTADYKISP----ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEE-DAVILGSFLNVCRL 573 (676)
Q Consensus 502 -~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~~l~~~~~~ 573 (676)
.+...|+++.|...++.... ..| ....+......+...++.++|...+.+.. .+. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 57777888888888877743 222 23334444444666778888888877766 223 35666777777777
Q ss_pred hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 574 NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.++++.+...+..+....|.....+..++..+...|+++++...++.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77888888888888888777556666777777766778888887777765443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.70 E-value=3.6 Score=43.76 Aligned_cols=179 Identities=12% Similarity=0.066 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCCccc---HHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHH
Q 005802 58 SWNTIISACIKSHDLKQARSLFDSSPHKDLVT---YNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNL 134 (676)
Q Consensus 58 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~ 134 (676)
....-|..+.+...++-|..+-..-..+.... ..-..+.+.+.|+++ +|..-|-+.+. -+.|. .++.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~-~A~~qYI~tI~---~le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFD-EATDQYIETIG---FLEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHcc---cCChH-----HHHHH
Confidence 45566777788888888888776544222222 223334556788999 99888877763 23333 34445
Q ss_pred HHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 005802 135 CVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKT 214 (676)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 214 (676)
+....+...--.+++.+.+.|+..... -+.|+.+|.+.++.++-.++.+......-..-....+..+.+.+-.++|.-+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 555555566667778888887654443 5788999999999999988888766311122245567777777777777766
Q ss_pred HhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 215 FWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMG 251 (676)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (676)
-.... . +....+.+ +-..+++++|+..+..|.
T Consensus 486 A~k~~-~-he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 486 ATKFK-K-HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhc-c-CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 65554 1 22223333 345678888888887654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.065 Score=52.64 Aligned_cols=62 Identities=6% Similarity=-0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcH----HHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDA----VILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
...+..+..+|.+.|++++|+..|++.. ..|+. .+|.++..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555555555666666666655544 33332 23555555566666666666666666554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.085 Score=47.93 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=46.7
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHHhCCHh
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-----TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
+.|++..|...|....+.|.-.+- ...+-.|..++...|++++|...|..+. .+.-+..+--+..+....|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 334555555555555543211100 2233345555555555555555554443 1223444555555556666666
Q ss_pred HHHHHHHHHHcccCCCC
Q 005802 579 LAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~ 595 (676)
+|...++++.+..|..+
T Consensus 233 ~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHCCCCH
Confidence 66666666666666544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.21 Score=46.97 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=65.3
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCC--CC--CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCcHH-----
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKI--SP--ETDHYACMIDLYGRANQLEKAIEFMKSIP-------TEEDAV----- 562 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~----- 562 (676)
+..++...+.++++++.|+....-..- .| ...++..|...|.+..++++|.-+..++. ...-..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 445555556666666666654321111 11 13456666677777777766655443332 111111
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc--cCCC----CccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL--EGNN----KARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
..-.+.-++...|....|.+..+++.++ ...| ......++++|...|+.|.|..-++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1222333566667777777777776665 2222 233456667777777766666655554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.38 Score=39.29 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=60.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKP--DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 542 (676)
.....+.|++++|.+.|+.+..+-... ....-..++.+|.+.|+++.|...+++.++-+.-.|+ .-|.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 344456677777777777766541111 1334455666677777777777777776654333333 2344444444433
Q ss_pred CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 543 NQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 543 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
...+..+.-+-. ..- ..+....|...|+++++..|++.
T Consensus 96 ~~~~~~~~~~~~--~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFFR--SDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhcc--ccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 332222211110 011 11235688888888888899864
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.7 Score=39.87 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=14.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHH
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
.+-.++.+|...|.-++-...+..
T Consensus 333 ~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 333 LHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHhccchhHHHHHHHH
Confidence 455677788777766654444433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.29 Score=38.98 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHHHHhC---CHhHHHHHHHHHHc-ccCCC-CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCce
Q 005802 558 EEDAVILGSFLNVCRLNR---NAELAGEAEEKLLR-LEGNN-KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGC 632 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 632 (676)
.+...+-..+.+++.++. +..+.+.+++.+.+ ..|.. -.....|+-.+.+.|+|+.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-------- 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-------- 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--------
Confidence 344445555666665554 34566667776665 33332 233445666677777777777777776643
Q ss_pred eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 633 SWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
+|.+.|....-+.++++|+|.|+
T Consensus 101 ------------------e~~n~Qa~~Lk~~ied~itkegl 123 (149)
T KOG3364|consen 101 ------------------EPNNRQALELKETIEDKITKEGL 123 (149)
T ss_pred ------------------CCCcHHHHHHHHHHHHHHhhcce
Confidence 55556666666667777777765
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.094 Score=34.45 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
...++-++.+.|++++|.+..+.+.+. +|...|.......++.+|.+.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 467888999999999999999999853 89999999999999999999883
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.054 Score=31.76 Aligned_cols=32 Identities=31% Similarity=0.040 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
.|..+..++...|++++|+..++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45555666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.19 Score=42.30 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHch----hhcCCCCCHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMT----ADYKISPETDH 531 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 531 (676)
+...++..+...|++++|..+++++.... +.|...|..++.+|...|+...|.++|+.+. ++.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445566667777777777777777642 3356677777778888888777777776653 23467776554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.09 E-value=2.4 Score=39.28 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=100.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
......|++.+|..+|....+..-. +...-..+..+|...|+.+.|..++..+-.+ .-.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3456778899999999888875322 3445566778888999999999999887543 1111122223345666666666
Q ss_pred HHHHHHHHhCCCCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc--CCCCccHHHHHHHHHhcCChhHHH
Q 005802 546 EKAIEFMKSIPTEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLE--GNNKARYVQLANVYAAEGNWAEMG 615 (676)
Q Consensus 546 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 615 (676)
.+...+-++.-..| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..|..++.-.|.-+.+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 66666666655344 66677778888889999999988888777663 335667777888887777555433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.4 Score=36.74 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH 505 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 505 (676)
.++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444555555555554443 2333444444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.7 Score=38.21 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGI--KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET 529 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 529 (676)
.+-.-+..-.+.|++++|...|+.+..+.. +-...+...++.++.+.++++.|...+++....++-.||.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 444445556778999999999999886421 1134566677778888999999999999988877777774
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.29 Score=39.54 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCcHHHHHHHHHH
Q 005802 524 KISPETDHYACMIDLYGRANQLEKAIEFMKSIP----TEEDAVILGSFLNV 570 (676)
Q Consensus 524 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~ 570 (676)
...|+..+..+++.+|+..|++..|+++++... .+-+..+|..|+.=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567888888888888888888888888876654 34456777777763
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.057 Score=31.72 Aligned_cols=31 Identities=19% Similarity=0.010 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+|..++.++...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4556666666667777777777777666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.3 Score=45.41 Aligned_cols=160 Identities=10% Similarity=-0.011 Sum_probs=116.9
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH----HHHHHHhhcCC
Q 005802 469 AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA----CMIDLYGRANQ 544 (676)
Q Consensus 469 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 544 (676)
-..|+..+|...++++.+. .+.|...+...=.+|...|+...-...++++..+ -.|+...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888999999999885 5667778888888999999999999889888753 345543333 44556678999
Q ss_pred HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC----CccHHHHHHHHHhcCChhHHHHHH
Q 005802 545 LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN----KARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 545 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
+++|++.-++.. .+.|.-...+..-.+.-.+++.++.+...+-...-..+ ..-|-+.+-.+...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999999887 33455555666667778889999998887766552221 223556666778889999999999
Q ss_pred HHHHhCCCcccCc
Q 005802 619 KQMRGMKGNRFAG 631 (676)
Q Consensus 619 ~~~~~~~~~~~~~ 631 (676)
+.=.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765544555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.89 Score=46.03 Aligned_cols=154 Identities=8% Similarity=0.014 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHH-HHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhcc
Q 005802 3 SLNLKEALICHVQ-AIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDS 81 (676)
Q Consensus 3 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 81 (676)
++|++++.+..+. -.-..+| ....+.++..+-+.|.++.|+++... -..-.....+.|+++.|.++..+
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHHCCC
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHHHHHHHh
Confidence 4566666655541 1111222 45578888888888999988887432 24556677888999999888877
Q ss_pred CCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCc
Q 005802 82 SPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGF 161 (676)
Q Consensus 82 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (676)
.. +...|..|.....++|+.+ -|.+.|++... +..|+=.+...|+.+...++.+.....|
T Consensus 344 ~~--~~~~W~~Lg~~AL~~g~~~-lAe~c~~k~~d-----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------ 403 (443)
T PF04053_consen 344 LD--DPEKWKQLGDEALRQGNIE-LAEECYQKAKD-----------FSGLLLLYSSTGDREKLSKLAKIAEERG------ 403 (443)
T ss_dssp CS--THHHHHHHHHHHHHTTBHH-HHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred cC--cHHHHHHHHHHHHHcCCHH-HHHHHHHhhcC-----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------
Confidence 65 5568999999999999999 99999888764 5566667777888888777777766652
Q ss_pred hhhHHHHHhhhccchHHHHHhhhhc
Q 005802 162 AVSSLIDMYSKCRCYEEACRVFEGC 186 (676)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~ 186 (676)
-++....++.-.|++++..+++.+.
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2555556666667777666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=4.1 Score=38.58 Aligned_cols=238 Identities=11% Similarity=-0.026 Sum_probs=113.2
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCCh---hHHHHHHHHhHhccCCCCCChhh
Q 005802 51 MPERNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYE---ADALKLFIEMQSADEHIRMDEFT 127 (676)
Q Consensus 51 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~a~~~~~~m~~~~~~~~p~~~~ 127 (676)
+..+|..+....+.++...|..+-...+..-...+|...-..-+.++..-|... ..+...+..+.. -.|+...
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~----~D~d~~V 107 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL----EDKSACV 107 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh----cCCCHHH
Confidence 344555555566666666554333222222223455555555555666655432 145666655532 2345555
Q ss_pred HHHHHHHHHccCCcHH--HHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhc
Q 005802 128 VTSTLNLCVKLLNVGF--GRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCRE 205 (676)
Q Consensus 128 ~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (676)
-...+.+++..+.... -....+.+...-..++..+-...+.++.+.|+ +++...+-.+..+++..+...-+.++++.
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 5555555554432111 11222222222222344455555556655554 34555554444455555555555555554
Q ss_pred C-ChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHH
Q 005802 206 G-EMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSW 284 (676)
Q Consensus 206 g-~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 284 (676)
+ ..+.+...+..+...++..+-...+.++.+.|+ ..|+..+-...+.+. ....++.++...|+. .+...+..
T Consensus 187 ~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 187 KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 2 133344444333335555566666666666665 345555555444322 123455666666664 45555555
Q ss_pred HHHhCCCCchhHHHHHHH
Q 005802 285 VLKNGLISNPFVSSGIVD 302 (676)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~ 302 (676)
+.+.. +|..+-...+.
T Consensus 260 l~~~~--~d~~v~~~a~~ 275 (280)
T PRK09687 260 LLYKF--DDNEIITKAID 275 (280)
T ss_pred HHhhC--CChhHHHHHHH
Confidence 55432 34444443333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.57 Score=39.27 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=66.5
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
-+...|++++|..+|+-+..- .| +..-+..|..++-..+++++|+..|.... ...|+...-....++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 345679999999999988642 33 35667778888888899999999987655 4456666666778888999999
Q ss_pred HHHHHHHHHHc
Q 005802 579 LAGEAEEKLLR 589 (676)
Q Consensus 579 ~a~~~~~~~~~ 589 (676)
.|+..|+.+++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999887
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.41 E-value=8.8 Score=41.39 Aligned_cols=84 Identities=11% Similarity=-0.020 Sum_probs=46.8
Q ss_pred cCChhHHHHHHHHHHhCC---CCCcHhHHHHHHHHHh--CCCChHHHHHHHHHHHHhCC---------CCchhHHHHHHH
Q 005802 237 NGDAEEGLKLFVRMGENG---VRWNEHTFASALSACC--GLRNVKCAKEIHSWVLKNGL---------ISNPFVSSGIVD 302 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~ 302 (676)
.+++..|++.++.....- ..|-...+..++.+.. +.+..+.+.+.++.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 368888888887775532 2344445555555543 45556666666666633221 234445555555
Q ss_pred H--HHhcCChHHHHHHHHhc
Q 005802 303 V--YCKCENMNYAESMLLLK 320 (676)
Q Consensus 303 ~--~~~~g~~~~a~~~~~~~ 320 (676)
. +...|+++.+...++.+
T Consensus 232 l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 4 34466666666555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.39 Score=43.60 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=75.2
Q ss_pred HHHHhhcC--CCCcchHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC------------
Q 005802 447 EIIFQNFI--ERDLVLYNVMIACYAHH-----GHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG------------ 507 (676)
Q Consensus 447 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------------ 507 (676)
+..|.... +.|-.+|.+.+..+... +.++-....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 55667777777777543 456666677889999999999999999999876532
Q ss_pred ----cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 508 ----SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 508 ----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
+-+-++.++++| +.+|+.||..+-..|+.++++.+-.
T Consensus 134 HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 334578999999 5569999999999999999998854
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=4 Score=37.38 Aligned_cols=197 Identities=19% Similarity=0.155 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCc-chHHHHHH-H
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRM-GVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RDL-VLYNVMIA-C 467 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~ 467 (676)
..+......+...+....+...+...... ........+......+...+++..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444444555555555444444332 2233444555555666666667777777776653 221 22333333 6
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC----CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhc
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKP----DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRA 542 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 542 (676)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7888999999999998865 333 2333444444466788999999999988743 222 367788888888999
Q ss_pred CCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 543 NQLEKAIEFMKSIP-TEED-AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 543 g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+++++|...+.... ..|+ ...+......+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999998887 3343 455555556556777899999999999998886
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.26 E-value=4 Score=39.94 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=21.8
Q ss_pred CCHhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 491 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
.+-..+..++.++.-.|++++|.+..+.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 3455566677777777788888887777763
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.8 Score=34.86 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=10.5
Q ss_pred HHHHHhhccCcHHHHHHHHHHc
Q 005802 498 AILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 498 ~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
.++..|.+.+.++++..++.++
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhh
Confidence 3444444445555555554444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.17 E-value=5.2 Score=39.73 Aligned_cols=149 Identities=9% Similarity=-0.038 Sum_probs=78.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP---DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDH 531 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 531 (676)
...+|..++..+.+.|+++.|...+.++...+..+ .......-....-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34467777888888888888888888877643211 2222333344455667778888877777652 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCcHHHHHHHHHHHHHh------CCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 532 YACMIDLYGRANQLEKAIEF-MKSIPTEEDAVILGSFLNVCRLN------RNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|.++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000111222333333333 788999999999999999988888888877
Q ss_pred HHhc
Q 005802 605 YAAE 608 (676)
Q Consensus 605 ~~~~ 608 (676)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6553
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.07 E-value=4.3 Score=36.44 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCCcH-HHHHHHHHHHHHhCCHhHHHHHHHHHHcc----cCCCCccHH
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-------TEEDA-VILGSFLNVCRLNRNAELAGEAEEKLLRL----EGNNKARYV 599 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~ 599 (676)
+..+...|.+...+++|-..+.+-. .-|+. ..+...+-.+....|+..|+..++...+. .|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3344455555556655554444332 11111 12333333444555666776666665444 344444555
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 005802 600 QLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~ 618 (676)
.|+..| ..|+.+++.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 555444 345556555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.45 Score=43.21 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCCeeeHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCC----------------ChHHHH
Q 005802 221 LNDAVSWNTLISGYVQN-----GDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLR----------------NVKCAK 279 (676)
Q Consensus 221 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 279 (676)
..|-.+|-..+..|... +..+=....++.|.+.|+.-|..+|..||+.+-+.. .-+.+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44556666666666433 445556667788999999999999999998876533 235689
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHH
Q 005802 280 EIHSWVLKNGLISNPFVSSGIVDVYCKCENM-NYAESML 317 (676)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~ 317 (676)
+++++|..+|+.||..+-..+++++.+.+-. .+..+++
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHH
Confidence 9999999999999999999999999987763 3334333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=2 Score=40.25 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=108.7
Q ss_pred HhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH----HHHhhccCcHH
Q 005802 438 SKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI----LSAFRHCGSVE 510 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~g~~~ 510 (676)
...|++.+|-..++++. +.|..++...=.+|...|+.+.-...++++... ..||...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34677778877777776 347778888888999999999999999998865 45666555433 33456789999
Q ss_pred HHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCc------HHHHHHHHHHHHHhCCHhHHHHH
Q 005802 511 MGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEED------AVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
+|.+.-++.. .+.|. .-...++...+.-.|+..++.+++.+-...-+ ...|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999988876 44443 55556778888889999999999988761111 11122222344566899999999
Q ss_pred HHHHH--cccCCCCc
Q 005802 584 EEKLL--RLEGNNKA 596 (676)
Q Consensus 584 ~~~~~--~~~p~~~~ 596 (676)
|.+-+ +...+|+.
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 98644 23555553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.2 Score=46.68 Aligned_cols=90 Identities=14% Similarity=0.055 Sum_probs=43.3
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
-|.+.|.+++|+..|..-. .+.| ++.++..-..+|.+...+..|..-...+. ...-...|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3556666666666665554 3344 45555555556666666555554444333 0001111222222222334555
Q ss_pred HHHHHHHHHHcccCCC
Q 005802 579 LAGEAEEKLLRLEGNN 594 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~ 594 (676)
+|.+-++.++++.|.+
T Consensus 183 EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHhHHHHHhhCccc
Confidence 5555566666665553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=5.1 Score=36.46 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIER------DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
...|+. +..-.+.|++++|.+.|+.+... ...+.-.++-++.+.+++++|+..+++....-......-|...|
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334443 44456789999999999998733 22345556777889999999999999988843222233455555
Q ss_pred HHhhc-------cCcHH---HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005802 501 SAFRH-------CGSVE---MGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNV 570 (676)
Q Consensus 501 ~~~~~-------~g~~~---~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 570 (676)
.+++. ..|.. .|..-|+.+..++ ||.. -...|..-+..+. ..-...=..+.+-
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~-d~LA~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN-DALAGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 55442 12333 3333344444332 3311 1111111111110 0000011235567
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCc---cHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKA---RYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
|.+.|.+..|..-++++++..|+.+. .+..|..+|...|..++|.+.-+-+...
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88999999999999999998666544 4566778899999999999887766543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.93 Score=36.06 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=75.6
Q ss_pred HccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHH
Q 005802 136 VKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTF 215 (676)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 215 (676)
.-.|.++++.++.....++. +..-++=+|.-....-+-+...+.++.+.+-.|.. .+|++......+
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHH
Confidence 34566777777777666651 11234444444444455555555555554422221 233444444433
Q ss_pred hhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 005802 216 WRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGL 290 (676)
Q Consensus 216 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 290 (676)
-.+. .+....+..+..+...|+-+.-.+++.++.. +-.|++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 80 ~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 80 AKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3332 2334456667778888888888888888765 3457777777888888888888888888888888875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.67 E-value=6.6 Score=37.31 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEK 487 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 487 (676)
++..-+..+.+.++.+.+.+.+.+|+..
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3333444444455666666666666653
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.12 Score=30.92 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+..|+.+|.+.|+|++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6778899999999999999988854
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.58 E-value=1.9 Score=43.81 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHh
Q 005802 125 EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCR 204 (676)
Q Consensus 125 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (676)
..-.+.+++.+-+.|..+.|+++...-..+ .+...+.|+++.|.++.++.. +...|..|.+...+
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKELD---DPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHH
Confidence 344667777777777777777665543322 344556677777777766533 45577777777777
Q ss_pred cCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHH
Q 005802 205 EGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 205 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
.|+++-|.+.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++
T Consensus 360 ~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 360 QGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776665 356666666666766665555555554442 333334444445555554444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.3 Score=37.18 Aligned_cols=128 Identities=10% Similarity=0.105 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHH-HHHHH--
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD-HYACM-- 535 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l-- 535 (676)
.|.+-++ +++.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|+++-.. ...|... -...|
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHH
Confidence 3444333 356778888888888888766543221 1112223456778888888888888544 3333321 11122
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCC--C-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHc
Q 005802 536 IDLYGRANQLEKAIEFMKSIPTE--E-DAVILGSFLNVCRLNRNAELAGEAEEKLLR 589 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 589 (676)
..++...|.+++....++.+..+ | -...-..|.-+-.+.|++..|...|..+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23455677787777777766522 2 223445566667777888888888777765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.11 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=29.0
Q ss_pred CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 595 KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
|..+..|+.+|.+.|++++|.+.++++.+..++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 356889999999999999999999999987554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.19 E-value=2.9 Score=43.14 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-Cc---------chHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIER-DL---------VLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFV 497 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~---------~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~ 497 (676)
.++...+=.|+-+.+.+.+....+. +. ..|+..+..++. ....+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 3444444455555555555544321 11 134444444433 34577788888888774 56655554
Q ss_pred HHH-HHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHH-
Q 005802 498 AIL-SAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVC- 571 (676)
Q Consensus 498 ~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~- 571 (676)
..- +.+...|++++|.+.|+.....-.--|. ...+--+...+.-.+++++|.+.|..+. ..-...+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 333 4556678888888888865421011112 3344456677777888888888888877 223444444444433
Q ss_pred HHhCCH-------hHHHHHHHHHHcc
Q 005802 572 RLNRNA-------ELAGEAEEKLLRL 590 (676)
Q Consensus 572 ~~~~~~-------~~a~~~~~~~~~~ 590 (676)
...++. ++|..+++++-..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 445555 6777777766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.18 E-value=17 Score=40.67 Aligned_cols=143 Identities=12% Similarity=0.113 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
+.-.++.--+.|.+.+|..++..-.+.-...|.+...-+...+.+++|.-.|+..-+ ....+.+|..+|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 333444444555666666555443333334555556666677788888777765422 23456778888999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
.+|+.+..++.. +-.--..+-..|+.-+..+++.-+|-++..+....|... +..+++...+++|.++.....
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhcc
Confidence 999888887742 111112223567777888888888888888877444332 223445556666666665554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.06 E-value=5 Score=34.14 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILR 420 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 420 (676)
.+..++..+...|++-+|+++.+.. .. .+......++.+....++...-..+++...+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~-~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY-HK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc-CC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777788888888777653 11 1111223445555555555544445544444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.98 E-value=8.5 Score=36.57 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHH---HHcCChhHHHHHHHHHHHCCCCCCH
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACY---AHHGHEEKAILLFEEMLEKGIKPDA 493 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~---~~~~~~~~A~~~~~~m~~~g~~p~~ 493 (676)
.++..-+..+.+.++.+.+.+.+..|... ....+...+..+ .. .....|...+..+....+.|..
T Consensus 122 ~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 122 EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33333444444455666666666555421 122333333333 22 2345566666666655455544
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.66 E-value=5.4 Score=35.06 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=87.1
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+..||-|.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+-..-+...-.|=...|-.++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3467777777778888888888888877633111111222222 234567888777766655433122222222222221
Q ss_pred HHhhcCCHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-------CccHHHHHHHHHhcC
Q 005802 538 LYGRANQLEKAIEFM-KSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-------KARYVQLANVYAAEG 609 (676)
Q Consensus 538 ~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 609 (676)
+.-++.+|..-+ ++.. ..+..-|...+-.+.-..- ..+.+++++.+...++ ..+|+-|+.-|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgki--S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKI--SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhc--cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 233556665443 3333 3444555444433322111 1122333333332222 347888999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 005802 610 NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~~ 626 (676)
+.++|..+++.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999998876544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.33 Score=38.32 Aligned_cols=57 Identities=14% Similarity=-0.021 Sum_probs=53.1
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
-+....|+.+.|++.|-+++.+.|..++.|+.-+.++.-+|+.++|++-+++..+..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 367889999999999999999999999999999999999999999999999988753
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.64 E-value=5.8 Score=33.77 Aligned_cols=131 Identities=10% Similarity=0.066 Sum_probs=85.9
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChHHHHHHHHhcC
Q 005802 244 LKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCE--NMNYAESMLLLKG 321 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~ 321 (676)
+++++.+.+.|++|+...+..+++.+.+.|.+... ..++..++-+|.......+-.+.... -.+.|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 46667777788999999999999999998886644 44455566666555544443333221 1445556665554
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 322 VRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 322 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
..+..++..+...|++-+|.++.+....-+......++.+-.+.++..--..+|+-.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 245667778889999999999998875554455566677776776655544444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.13 Score=30.11 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..+..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4688999999999999999999999876543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=10 Score=36.03 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=14.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLN 569 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 569 (676)
..+.+++..|.. +|+..+..+. ..||..+....+.
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHH
Confidence 344444444443 3444444443 2334444333333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.30 E-value=4.8 Score=33.77 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=39.2
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVC 571 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 571 (676)
...++.+++..++..+. -+.|. ...-..-...+.+.|++.+|+.+|+++. ..|....-..|+..|
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 45667778888877775 45566 2222233555677888888888888876 333333334444434
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.97 Score=42.16 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEE
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHI 643 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (676)
.+.+-.+|.+.++++.|.++.+.++...|+++.-+...|-+|.+.|.+..|..-++...+.-++
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---------------- 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---------------- 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----------------
Confidence 3455567889999999999999999999999999999999999999999999999888765442
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHH
Q 005802 644 FTVGDVSHPKTNAIYSVLAIFTGEL 668 (676)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (676)
+|.+..|...+..|..+.
T Consensus 248 -------dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 248 -------DPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred -------chhHHHHHHHHHHHhhcC
Confidence 677777777777776553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.19 E-value=3.7 Score=36.79 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCC-------CCCe-eeHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHhHHH
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPE-------LNDA-VSWNTLISGYVQNGDAEEGLKLFVRMGENG---VRWNEHTFA 263 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~ 263 (676)
+...-+.+.+...+++|-..|.+-.. .++. ..|-..|-.+.-..++..|...++.--+.+ -.-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 34444555666666665444433221 1111 124444555566667777777777644432 122445666
Q ss_pred HHHHHHhCCCChHHHHHHH
Q 005802 264 SALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 264 ~ll~~~~~~~~~~~a~~~~ 282 (676)
.||.+| ..|+.+.+.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666665 456666665554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.29 Score=28.56 Aligned_cols=31 Identities=23% Similarity=0.042 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455556666667777777777776666663
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.9 Score=37.21 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHhCC-CCCcHHHHH-HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 542 ANQLEKAIEFMKSIP-TEEDAVILG-SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
.++.+++..++..+. ..|+..-.. .-.+.+...|++.+|.++++.+.+..+..+-.-..++.++...|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 455555555555444 233222221 222344455555555555555554444333333344444444444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.27 Score=29.29 Aligned_cols=28 Identities=29% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+|..+..+|...|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888885544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.03 E-value=7.6 Score=33.69 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHH--HHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH-----HHHHHHhhcCCHHHH
Q 005802 476 KAILLFEEMLEKGIKPDAVTFVA--ILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA-----CMIDLYGRANQLEKA 548 (676)
Q Consensus 476 ~A~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A 548 (676)
+.....+++....-+....++.. +...+...|++++|...++..... |.-..+. .|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555666665422222222222 334567788889888888876532 2222222 355667788889999
Q ss_pred HHHHHhCCCCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 549 IEFMKSIPTEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 549 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+..++....+. .+.....-+.++...|+.++|...|+++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 98888776221 2223444455788888888888888888887643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.84 Score=38.14 Aligned_cols=74 Identities=12% Similarity=-0.102 Sum_probs=49.5
Q ss_pred HhhcCCHHHHHHHHHhCC-CCCcHHHHH-HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChh
Q 005802 539 YGRANQLEKAIEFMKSIP-TEEDAVILG-SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWA 612 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 612 (676)
-.+.++.+++..++..+. ..|...... .-.+.+...|++.+|+.+++.+.+..|..+..-..++.++...|+.+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 346677888888877776 455444333 33446678888888888888877777766666666666666666654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.92 E-value=6 Score=42.48 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=42.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHh---c
Q 005802 232 SGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNG-LISNPFVSSGIVDVYCK---C 307 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 307 (676)
..+.-.|+++.|++++-. ..+...+.+.+.+.+..+.-.+-.+... ..+.... -.|.+.-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445568999999999877 3345567788888777665433222221 2222111 01122457778888877 3
Q ss_pred CChHHHHHHHHhcCC
Q 005802 308 ENMNYAESMLLLKGV 322 (676)
Q Consensus 308 g~~~~a~~~~~~~~~ 322 (676)
.+...|.+.+-.+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 567778777766554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.82 E-value=20 Score=38.17 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=54.4
Q ss_pred HHHhhhccchHHHHHhhhhcCCC-C---chhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhH
Q 005802 167 IDMYSKCRCYEEACRVFEGCTEE-V---NLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEE 242 (676)
Q Consensus 167 i~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 242 (676)
|+-+.+.+.+++|+.+.+..... + ....+..+++.+...|++++|-...-.|- ..+..-|..-+..+...++...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-GNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-cchHHHHHHHHHHhccccccch
Confidence 44566667777777777654441 1 23455667777777777777766665555 4445555555555555554433
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHhC
Q 005802 243 GLKLFVRMGENGVRWNEHTFASALSACCG 271 (676)
Q Consensus 243 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 271 (676)
...++ ....-..+...|..+|..+..
T Consensus 442 Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 IAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhccC---CCCCcccCchHHHHHHHHHHH
Confidence 22221 111111244456666655544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.66 E-value=3.6 Score=41.19 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCC--CCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGN--NKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
..+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+.+.++..++.+--
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34444555555556666666555555443 23345555555555666666655555543
|
The molecular function of this protein is uncertain. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.19 Score=29.36 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
..|..++.+|...|++++|+..+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999887544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.45 E-value=4.3 Score=34.26 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=77.3
Q ss_pred HhcCCHHHHHHHHhhcCCCCcchHHHHH-----HHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHH--HHhhccCcH
Q 005802 438 SKCGNMTYAEIIFQNFIERDLVLYNVMI-----ACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAIL--SAFRHCGSV 509 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll--~~~~~~g~~ 509 (676)
.+.+..++|+.-|..+.+.+...|..|. ......|+...|...|++.-...-.|-.. -...|- ..+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3456667777777777666555555443 33567788888888888887654444332 112222 235678888
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
++.....+-+... +-+.....-..|.-+-.+.|++.+|.++|..+.
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 8888888877543 333335555677777788999999999988776
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.26 E-value=20 Score=37.01 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=54.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHhccCCC--CCcc-cHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHH
Q 005802 55 NVFSWNTIISACIKSHDLKQARSLFDSSPH--KDLV-TYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTST 131 (676)
Q Consensus 55 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~l 131 (676)
+-..|+.+|.--....+++.++.+++.+.. |... -|.-....=.+.|... .+..+|++.. .+++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~-~s~~Vfergv---~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAE-NSVKVFERGV---QAIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH---HhhhhHHHHHHHH
Confidence 445666666555555555666666666552 3332 1333334444566677 7888888877 3455566666555
Q ss_pred HHHHH-ccCCcHHHHHHHHHHHHh
Q 005802 132 LNLCV-KLLNVGFGRQLHAFMVKT 154 (676)
Q Consensus 132 l~~~~-~~~~~~~a~~~~~~~~~~ 154 (676)
+..+. ..|+.+.....|+..+..
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~ 143 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSY 143 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHh
Confidence 55443 455666666666666554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.95 E-value=12 Score=34.06 Aligned_cols=238 Identities=12% Similarity=0.144 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc--CC--CCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc-----CCCCChh
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTK--EG--VVTDALILVILLGACALQAALHPGKEIHAYILRM-----GVQMDKK 428 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 428 (676)
+...++....+.+++++.+..|.+|+.- .. -.-+..+.+.++.-.+...+.+....+++.-.+. +-..-..
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 4445666777777777777777766311 11 1223445666666655555555555554432221 1122233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---------------CcchHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCC
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIER---------------DLVLYNVMIACYAHHGHEEKAILLFEEMLE-KGIKPD 492 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~ 492 (676)
+-+.|...|...|++.+..+++.++... -...|..=|+.|...++-..-..++++... ..--|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 4456777788888888887777766311 123577778889888888888888888765 223455
Q ss_pred HhHHHHHHHHh-----hccCcHHHHHHHHHHchhhcCC--CCCH-H--HHHHHHHHHhhcC----CHHHHHHHHHhCCCC
Q 005802 493 AVTFVAILSAF-----RHCGSVEMGEKYFNSMTADYKI--SPET-D--HYACMIDLYGRAN----QLEKAIEFMKSIPTE 558 (676)
Q Consensus 493 ~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~~-~--~~~~l~~~~~~~g----~~~~A~~~~~~~~~~ 558 (676)
+.... +++-| .+.|.+++|..-|=+..+.+.- .|.. . -|..|...+.+.| +..+|. -....
T Consensus 227 PlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 227 PLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred hHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 54443 34433 4578888875433333232221 2332 2 2455666666665 222221 11134
Q ss_pred CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHH
Q 005802 559 EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
|.......++.+|.. ++..+-+++++.-....-++|.+..++
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHHHHHH
Confidence 455566777777654 455555555554444333444444333
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.65 E-value=21 Score=36.12 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcccCCCC
Q 005802 579 LAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~ 595 (676)
.|.+.+.++.+.+|.-+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 46677788887777654
|
The molecular function of this protein is uncertain. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.7 Score=38.69 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=23.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHH
Q 005802 231 ISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 231 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
|..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 4444444455555555555554433333444444455555444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.02 E-value=8.3 Score=36.79 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCC-------CCcchHHHHHHHHHHcCC----hhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCc-
Q 005802 443 MTYAEIIFQNFIE-------RDLVLYNVMIACYAHHGH----EEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGS- 508 (676)
Q Consensus 443 ~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~----~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~- 508 (676)
..+|..+|+.|.+ ++-.++..++.. ..++ .+.+..+|+.+.+.|+..+. .....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3445566666642 233344444433 2222 45667778888887877653 334444433332222
Q ss_pred -HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH
Q 005802 509 -VEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL 545 (676)
Q Consensus 509 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 545 (676)
..++.++++.+.+. ++++....|..+.-.-.-.+..
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHHHhcCCch
Confidence 45788888888776 8888877777665544333333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.63 Score=26.77 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..++.+|.+.|++++|.+.++++.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444445555555555544443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.87 E-value=4.2 Score=35.22 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=59.1
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhC
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-----TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNR 575 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 575 (676)
+...|++++|..-|...+.. ++|. ...|..-..++.+.+.++.|++-..+.. ..| ....+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44566667666666666532 1111 2234444556667777777777666665 222 2222223334677778
Q ss_pred CHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 576 NAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
.++.|+.-|+++.+.+|.....-...+.+
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 88999999999998888765444444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.77 E-value=22 Score=35.16 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=39.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFIER-------DLVLYNVMIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
...++..+...+.+.|.++.|...+..+... .+.....-+..+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666677777777777777777666532 233444455666677888888887777766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.31 Score=40.82 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHhccC
Q 005802 3 SLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTIISACIKSHDLKQARSLFDSS 82 (676)
Q Consensus 3 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 82 (676)
++.+......++.+...+...++...+.++..|++.++.+...++++.... .-...++..+.+.|.+++|.-++..+
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHHHc
Confidence 456777778888888877777899999999999999888999998884433 33344555555555555555555544
Q ss_pred C
Q 005802 83 P 83 (676)
Q Consensus 83 ~ 83 (676)
.
T Consensus 97 ~ 97 (143)
T PF00637_consen 97 G 97 (143)
T ss_dssp T
T ss_pred c
Confidence 3
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.35 Score=27.87 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+-.+..++...|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456778889999999999999999999974
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.34 E-value=26 Score=35.39 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=93.7
Q ss_pred CCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHH
Q 005802 388 VVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVM 464 (676)
Q Consensus 388 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 464 (676)
...|.....+++..+.......-.+.+-.++...| -+...+..++.+|... ..+.-..+|+++.+- |++.-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 34455555666666666555555555666665544 3444555666666655 445555555544432 33333334
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCC------HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPD------AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
...|-+ ++.+.+...|.+...+ +-|. ...|..+... -..+.+....+...+..+.|...-...+..+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 444443 6666666666666543 2221 1233333321 1345666666666665554544445555556666
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHH
Q 005802 539 YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVC 571 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 571 (676)
|....++++|++++..+. ...|......++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 777777777777777665 333444444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.19 E-value=9.3 Score=33.25 Aligned_cols=97 Identities=11% Similarity=0.090 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH--HH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA--CM 535 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l 535 (676)
.+..+..-|++.|+.+.|++.|.++.+....|.. ..+..+++.....+++..+...+.+.........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4455666666677777777777776665433332 2344555666666677666666665533211111111111 11
Q ss_pred H--HHHhhcCCHHHHHHHHHhCC
Q 005802 536 I--DLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 536 ~--~~~~~~g~~~~A~~~~~~~~ 556 (676)
. -.+...+++.+|-+.|-+..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 1 12334667777777776665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.05 E-value=37 Score=36.65 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCC
Q 005802 229 TLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGL 272 (676)
Q Consensus 229 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 272 (676)
.+|-.|.+.|++++|.++..+... +.......|...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 345566777777777777754443 3444556666667766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.52 Score=25.54 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHH
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345678888888888888888775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.7 Score=26.87 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988764
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.49 E-value=3.5 Score=38.42 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHhHHHHHH
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLE-----KGIKPDAVTFVAIL 500 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 500 (676)
++..++..+..+|+++.+.+.++.+... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4556677777777777777777766532 556777777777777777777777777654 56666666555544
Q ss_pred HH
Q 005802 501 SA 502 (676)
Q Consensus 501 ~~ 502 (676)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.8 Score=38.90 Aligned_cols=59 Identities=17% Similarity=0.002 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHhC-----------CHhHHHHHHHHHHcccCCCCccHHHHHHHHHh-cCChhHHHHHHHHHHhCCC
Q 005802 560 DAVILGSFLNVCRLNR-----------NAELAGEAEEKLLRLEGNNKARYVQLANVYAA-EGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 626 (676)
...++..+++++...+ .+++|...|+++.+.+|.+ .+|.+ ..-.++|=++..++.+.+.
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQGL 138 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4456666666665443 2455666666666666665 24433 2333455555555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.92 E-value=16 Score=31.77 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=75.1
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHH-----HHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHH-----HHHHHHHhCCHhHH
Q 005802 511 MGEKYFNSMTADYKISPETDHYAC-----MIDLYGRANQLEKAIEFMKSIPTEEDAVILGS-----FLNVCRLNRNAELA 580 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a 580 (676)
+.....+.+... +...+|.. +...+..+|++++|...++.....|....+.. |.......|.++.|
T Consensus 70 ~~~~~~ekf~~~----n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQA----NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhh----ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444445555443 22334443 35567889999999999997774454444443 44467788999999
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
...++...+..= .+.....-++++...|+-++|+.-|+...+.+
T Consensus 146 L~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 146 LKTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 998876543210 12335677899999999999999999998765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.3 Score=39.61 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLR 589 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 589 (676)
..++..++..+...|+.+.+...+++.. .+-+...|..++.+|...|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445555555555555555555555554 233555555555555555555555555555554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.57 E-value=4.1 Score=35.64 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=54.0
Q ss_pred cCCHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc----CCCCccHHHHHHHHHhcCChhHHH
Q 005802 542 ANQLEKAIEFMKSIPTEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLE----GNNKARYVQLANVYAAEGNWAEMG 615 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~ 615 (676)
.-.-++|...|-.+...| +...+-..+..|....|.++++.++-+++++. .-|+.++..|+.+|.+.|+++.|-
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 334466777776666333 33444555566777889999999999999882 236888999999999999998874
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.80 E-value=4.2 Score=30.45 Aligned_cols=63 Identities=10% Similarity=0.204 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++..+.+-+ .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666777777788899999999999999999999999999998865422 24456666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.9 Score=40.45 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=64.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA 542 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 542 (676)
..-|.+.|.+++|+..|.+-+. +.| |.+++..-..+|.+...+..|..-......- .-. ...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence 4568999999999999998887 456 8888888888999999998888777766532 111 33344444444445
Q ss_pred CCHHHHHHHHHhCC-CCCcHH
Q 005802 543 NQLEKAIEFMKSIP-TEEDAV 562 (676)
Q Consensus 543 g~~~~A~~~~~~~~-~~~~~~ 562 (676)
|+..+|.+-++... ..|...
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccH
Confidence 66667766666655 556543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.51 E-value=40 Score=34.22 Aligned_cols=175 Identities=13% Similarity=0.202 Sum_probs=115.8
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 423 VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 423 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
.+.|....-+++..++..-+..-.+.+-.+|. ..+-..|..++++|... ..++-..+|+++.+..+. |.+.-..|.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 35556666778888887777777777777775 34667888899999988 667888899998885432 333334455
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC------HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCcHHHHHHHHHH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE------TDHYACMIDLYGRANQLEKAIEFMKSIP----TEEDAVILGSFLNV 570 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~ 570 (676)
..|.+ ++.+.+..+|.....+ +-|. ...|..|.... ..+.+..+.+..++. ...-...+..+..-
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 55544 8888888888887653 2331 23455444422 345666666666655 22234455555567
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
|....++.+|++++..+++.+..|-.+...++.-
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 8888999999999998888876665544444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.36 E-value=65 Score=36.55 Aligned_cols=110 Identities=12% Similarity=0.046 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHh--HHHHHHHHHHh
Q 005802 327 SISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDAL--ILVILLGACAL 404 (676)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~ 404 (676)
.|.+....+...+.+++|.-.|+...+ ..-.+.+|..+|+|++|+.+-.++ .. .-+.. +-..|...+..
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql-~~---~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQL-SE---GKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhh-cC---CHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555554432 122345566667777777776654 11 11111 11334444445
Q ss_pred hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005802 405 QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNF 453 (676)
Q Consensus 405 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 453 (676)
.++.-+|-.+..+.... ....+..|++...+++|.++-...
T Consensus 1012 ~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred cccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 55555555444333221 122344555556666666554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.15 E-value=6.2 Score=34.35 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
.+..+..-|.+.|+.+.|.+.|.++... ...|. ...+-.++....-.|++..+...+.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666667777777777777776543 44444 4445556666666666666666655554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.04 E-value=0.64 Score=43.63 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=65.0
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
..|.+++|++.+...+ .++....+..-..++.+.+....|++-+..+++++|+...-|-.-+.+-...|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4566777777776666 33344444444556777778888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCccc
Q 005802 619 KQMRGMKGNRF 629 (676)
Q Consensus 619 ~~~~~~~~~~~ 629 (676)
....+.+.+..
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88887766543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.9 Score=38.47 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=22.3
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
.+.++++.+..-..+++++.|+.......|+..+.....+++|+..+.+.
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.89 E-value=1.5 Score=27.46 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468999999999999999999988644
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.2 Score=27.26 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 596 ARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.++..|+.+|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35778899999999999999999888653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.69 E-value=0.83 Score=26.75 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=21.4
Q ss_pred HHHHHHhCCCCCcccHHHHHHHHHhCCCchHHH
Q 005802 13 HVQAIKAGLTLTTITTNQLIHIYSKHNLLRESR 45 (676)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 45 (676)
|.+.++.. |-++.+|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555 556777777777777777777765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.42 E-value=6.1 Score=29.97 Aligned_cols=61 Identities=10% Similarity=0.204 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 475 EKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+-+ +....|..++.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35566677777778899999999999999999999999999999876533 33336776665
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.38 E-value=1.6 Score=26.72 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+++.+...|...|++++|+.+++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555666666666666666666666544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.38 E-value=28 Score=31.36 Aligned_cols=92 Identities=15% Similarity=0.145 Sum_probs=43.8
Q ss_pred HHHHHhhc-CCHHHHHHHHHhCC--C---CCcHHHHHHHH---HHHHHhCCHhHHHHHHHHHHcccCCCCc------cHH
Q 005802 535 MIDLYGRA-NQLEKAIEFMKSIP--T---EEDAVILGSFL---NVCRLNRNAELAGEAEEKLLRLEGNNKA------RYV 599 (676)
Q Consensus 535 l~~~~~~~-g~~~~A~~~~~~~~--~---~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~ 599 (676)
+...|-.. .++++|+..++... . ..+...-..++ ......+++.+|+.+|++.....-+++- -|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44444433 45566666555544 1 11111122222 2335667788888888877665333321 122
Q ss_pred HHHH-HHHhcCChhHHHHHHHHHHhCCC
Q 005802 600 QLAN-VYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 600 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.-+. ++.-.++.=.+...+++..+..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 2222 22223555556666666555443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.30 E-value=8.5 Score=33.92 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=64.1
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 580 (676)
-+.|-+.-|.--|.+.. .+.|+ +..||.|.--+...|+++.|.+.|+... ..| ...+...-.-++.--|+++.|
T Consensus 76 DSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 33455555555555554 55677 7777777777778888888888887766 222 222222222244455778888
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcC--ChhHHHHH
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEG--NWAEMGRI 617 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~ 617 (676)
.+-+-+.-+.+|.|| |..| +.|.... +..+|..-
T Consensus 153 q~d~~~fYQ~D~~DP--fR~L-WLYl~E~k~dP~~A~tn 188 (297)
T COG4785 153 QDDLLAFYQDDPNDP--FRSL-WLYLNEQKLDPKQAKTN 188 (297)
T ss_pred HHHHHHHHhcCCCCh--HHHH-HHHHHHhhCCHHHHHHH
Confidence 887777777777765 3332 4454433 44455543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.85 E-value=18 Score=37.30 Aligned_cols=148 Identities=17% Similarity=0.117 Sum_probs=89.3
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHH
Q 005802 439 KCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFN 517 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 517 (676)
-.|+++.|..++-.++++ .-+.++.-+.+.|-.++|+++ .+|.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 356666666666555532 234455555666766666653 33322 2222 236678888877766
Q ss_pred HchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 518 SMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 518 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
+.. +..-|..|.++..+.|++..|.+.|.+.. .|..|+-.+...|+.+.-..+-..+.+....|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 552 45667888888888888888888887764 45566666667777665555555554443332
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
.--.+|...|++++..+++..
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 222356667777777776654
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.54 E-value=2.2 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+..++.++...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.43 E-value=20 Score=33.65 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=46.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005802 237 NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNG 289 (676)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 289 (676)
.-++++++.++..=++-|+-||.++++.+|+.+.+.+++..|.++.-.|+...
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34678999999888899999999999999999999999999999988887664
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.76 E-value=31 Score=30.67 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACM 535 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 535 (676)
|.+..++.+.+.+...+|+...++-++.. +.|..+-..+++.++-.|++++|..-++..- .+.|+ ...|..+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 34556677888899999999888777652 3345566678888999999999988877663 33443 5566666
Q ss_pred HHHHhhcCCHHHHH-HHHHhCC-----CCCcHHHHHHHHHHH--HHhCCHhHHHHHHHHHHcccCCC
Q 005802 536 IDLYGRANQLEKAI-EFMKSIP-----TEEDAVILGSFLNVC--RLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 536 ~~~~~~~g~~~~A~-~~~~~~~-----~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+++ +.+. ++|.--. ..|.+.-...+..+. ...|..+.+..+-+.+.+..|..
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 654 2222 2333222 123343334444433 33345555666777777776654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.57 E-value=69 Score=34.49 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=63.2
Q ss_pred HHHHHhCCCchHHHHHhccCCC--C---CcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhH
Q 005802 32 IHIYSKHNLLRESRKLFDEMPE--R---NVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEAD 106 (676)
Q Consensus 32 ~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 106 (676)
++.+.+.+.+++|+++-+.... + -...+...|..+.-.|++++|-.+.-.|...+...|-.-+..+...++.. .
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~-~ 441 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT-D 441 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc-h
Confidence 4566677777888777766654 2 23466777777778888888877777777667677776666666665555 2
Q ss_pred HHHHHHHhHhccCCCCCChhhHHHHHHHHHc
Q 005802 107 ALKLFIEMQSADEHIRMDEFTVTSTLNLCVK 137 (676)
Q Consensus 107 a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 137 (676)
++.-+.. ...+.+...|..++..+..
T Consensus 442 ---Ia~~lPt--~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 442 ---IAPYLPT--GPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ---hhccCCC--CCcccCchHHHHHHHHHHH
Confidence 2223332 2223455667777766655
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=83.07 E-value=3 Score=31.36 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=21.0
Q ss_pred HHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 584 EEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+++..+.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444445555555555555555555555555555555444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.73 E-value=13 Score=34.81 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=72.0
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CC-----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh
Q 005802 421 MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-RD-----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV 494 (676)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 494 (676)
.|.+....+...++..-....+++++...+-++.. |+ ..+-.+.++.+. .-+.++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 35555666666667666667788888887777652 21 112222333333 346678888888888999999999
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhh
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
+++.++..+.+.+++.+|.++...|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988887776544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.44 E-value=19 Score=37.12 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=40.4
Q ss_pred HhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHH
Q 005802 203 CREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIH 282 (676)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 282 (676)
.+.|+.+.|.++..+.. +..-|..|-++..+.|++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 648 l~lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN---SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhcCcHHHHHHHHHhhc---chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 44566666655554432 445566666666666666666666655443 233444445555555444444
Q ss_pred HHHHHhC
Q 005802 283 SWVLKNG 289 (676)
Q Consensus 283 ~~~~~~~ 289 (676)
....+.|
T Consensus 716 ~~~~~~g 722 (794)
T KOG0276|consen 716 SLAKKQG 722 (794)
T ss_pred HHHHhhc
Confidence 4444444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=82.32 E-value=6.1 Score=33.82 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHhH---HHHHHHHhhccCcHHHHHHHHHHchhhc----CCCCC-HHHHHHHHHHHhhcC
Q 005802 474 EEKAILLFEEMLEKGIKPDAVT---FVAILSAFRHCGSVEMGEKYFNSMTADY----KISPE-TDHYACMIDLYGRAN 543 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g 543 (676)
++.|.+.++.-...+ +.|... |...+.-+++.....++..+++....++ .+.|+ ...+.++..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 344555555433322 223332 3333333444455566666666654433 45677 566777777666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.12 E-value=11 Score=34.02 Aligned_cols=59 Identities=19% Similarity=0.055 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+...++...|++-++++.....+...|.+..+|+.-+.+....=+.++|..-+....+.
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34445567889999999999999999999999999999988888889999888887754
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.11 E-value=5.5 Score=35.07 Aligned_cols=64 Identities=16% Similarity=0.013 Sum_probs=52.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-C-CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-T-EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.+.-++.+.+.+.+.+|+...+.-. . +.+......++..++..|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445677888999999999887655 3 44777888899999999999999999999999988753
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.28 E-value=91 Score=34.27 Aligned_cols=220 Identities=15% Similarity=0.056 Sum_probs=113.2
Q ss_pred HHHhhcChhHHHHHHHHHHHcCCCCChh-------HHHHHH-HHHHhcCCHHHHHHHHhhcC--------CCCcchHHHH
Q 005802 401 ACALQAALHPGKEIHAYILRMGVQMDKK-------LISTLV-DMYSKCGNMTYAEIIFQNFI--------ERDLVLYNVM 464 (676)
Q Consensus 401 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l 464 (676)
......++.+|..+..++...-..|+.. .++.|- ......|+++.|.++-+... .+..+.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445667777777776665533222211 222221 12234677788776655432 2356677778
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHH---HHHH--HHhhccCcHH--HHHHHHHHchhhcCCC-----CCHHHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPDAVTF---VAIL--SAFRHCGSVE--MGEKYFNSMTADYKIS-----PETDHY 532 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---~~ll--~~~~~~g~~~--~a~~~~~~~~~~~~~~-----p~~~~~ 532 (676)
..+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +....+......+... +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 88888889999998887766553222232222 2222 2355566332 2333333332221111 123445
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHhCC-CCCcHH--H--HHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-Cc-cHHHH---
Q 005802 533 ACMIDLYGRA-NQLEKAIEFMKSIP-TEEDAV--I--LGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-KA-RYVQL--- 601 (676)
Q Consensus 533 ~~l~~~~~~~-g~~~~A~~~~~~~~-~~~~~~--~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~-~~~~l--- 601 (676)
..+..++.+. +...+|..-++--. ..|.+. . +..+.......|+.++|...+.++......+ +. .|...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 5555555551 12222222222211 233222 1 1255667788999999999999888773322 22 12111
Q ss_pred --HHHHHhcCChhHHHHHHHH
Q 005802 602 --ANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 602 --~~~~~~~g~~~~A~~~~~~ 620 (676)
.......|+.++|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 1223457888888777655
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.04 E-value=2.6 Score=23.38 Aligned_cols=31 Identities=26% Similarity=0.030 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
..+..+...+...++++.|...++++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567778889999999999999999998766
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.00 E-value=13 Score=30.68 Aligned_cols=109 Identities=8% Similarity=0.073 Sum_probs=67.7
Q ss_pred CHhHHHHHHHH---hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-cHHHHHH
Q 005802 492 DAVTFVAILSA---FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEE-DAVILGS 566 (676)
Q Consensus 492 ~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 566 (676)
+....+.|+.. -...++.+++..++..|. -+.|+ ...-..-...+...|++.+|+.+|++....+ ....-..
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 33445555543 345789999999999997 55676 3333334566789999999999999998333 3222223
Q ss_pred HHHHHH-HhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 567 FLNVCR-LNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 567 l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
|...|. -.|| ..|...+......|.-.+|..+.+.+.
T Consensus 83 L~A~CL~al~D-------------------p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 83 LLALCLNAKGD-------------------AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHhcCC-------------------hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 333332 2222 235555555556666667777777666
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.66 E-value=60 Score=31.78 Aligned_cols=195 Identities=13% Similarity=0.161 Sum_probs=114.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHH-HH-HHHCCCCCCHhHHHHHHH
Q 005802 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLF-EE-MLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 424 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~-m~~~g~~p~~~~~~~ll~ 501 (676)
..+..++..++..|...++|+.--+.+. ...-++|+...|.... ++ |.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 4455566667777777777665433322 1224567777776532 22 222223456555555554
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--------cHHHHHHHHHH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP---ETDHYACMIDLYGRANQLEKAIEFMKSIPTEE--------DAVILGSFLNV 570 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~l~~~ 570 (676)
.+.. ..+- .+-. ....-..|...+-.+|+.++|..++.+.+... -.....--++.
T Consensus 115 tLr~-------------Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 115 TLRT-------------VTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRL 180 (439)
T ss_pred HHHH-------------hhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH
Confidence 3321 1110 1111 12233356677778899999988888876221 11122334567
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCC-------CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEE
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNN-------KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHI 643 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (676)
|...+||-.|.-+-+++....=+. ...|..++....+.+.|=++-+.++..-..|..+...--|.++...+..
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~ 260 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVS 260 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhee
Confidence 888999999999998887662222 2357888888888899999999999888877655533345555444333
Q ss_pred EEe
Q 005802 644 FTV 646 (676)
Q Consensus 644 ~~~ 646 (676)
|..
T Consensus 261 f~~ 263 (439)
T KOG1498|consen 261 FCV 263 (439)
T ss_pred EEe
Confidence 433
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.38 E-value=4.8 Score=28.88 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=29.2
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHH
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
.....++|+..|+...++..-.|+ ..++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777776665333333 45566667777777777766655
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 6e-14
Identities = 27/215 (12%), Positives = 66/215 (30%), Gaps = 9/215 (4%)
Query: 395 LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI 454
L LL + +L + + + ++ + + A +
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 455 ER-------DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF-RHC 506
+ L +YN ++ +A G ++ + + + + G+ PD +++ A L R
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 507 GSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGS 566
E+ M+ + + A ++ RA L+ + + +
Sbjct: 215 QDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
Query: 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601
+ R + + L L+ QL
Sbjct: 274 TSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.9 bits (138), Expect = 9e-09
Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 196 NAMVAACCREGEMEMALKTF------WRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVR 249
A C ++ +A ++ +L +N ++ G+ + G +E + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 250 MGENGVRWNEHTFASALSACC 270
+ + G+ + ++A+AL
Sbjct: 191 VKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 6e-05
Identities = 15/130 (11%), Positives = 33/130 (25%), Gaps = 11/130 (8%)
Query: 2 RSLNLKEALICHVQAIKAGLTLTTITTNQLIHIYSK-------HNLLRESRKLFDEMPER 54
L+L Q +A L+ H+LL +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 55 NVFSWNTIISACIKSHDLKQARSLFDSSPHK----DLVTYNSMLCGYINAEGYEADALKL 110
+ +N ++ + K+ + DL++Y + L + +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 111 FIEMQSADEH 120
+M
Sbjct: 224 LEQMSQEGLK 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 7e-13
Identities = 84/684 (12%), Positives = 197/684 (28%), Gaps = 221/684 (32%)
Query: 5 NLKEALIC-HVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERNVFSWNTII 63
+ C VQ + + ++ ++ HI + + + +LF
Sbjct: 28 AFVDNFDCKDVQ----DMPKSILSKEEIDHIIMSKDAVSGTLRLFW-------------- 69
Query: 64 SACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGY--------INAEGYEADALKLFIEMQ 115
+ S + + + + Y ++ + Y +L+ + Q
Sbjct: 70 --TLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 116 S-ADEHI-RMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKC 173
A ++ R+ + L + L + ++ G + + C
Sbjct: 125 VFAKYNVSRLQPYL---KLRQALLELRPAKNVLIDG-VL-------GSGKTWVA--LDVC 171
Query: 174 RCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISG 233
Y+ C+ + ++ ++ + C + L+ Q + N
Sbjct: 172 LSYKVQCK-MDF---KIFWLN----LKNCNSPETVLEMLQKLLYQIDPN----------- 212
Query: 234 YVQNGDAEEGLKLFVRMGENGVR--WNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLI 291
+ D +KL + + +R + + L L NV+ ++
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNVQ-----NAKAWN---- 260
Query: 292 SNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSL 351
F ++ CK +LL R + + +++ H +L
Sbjct: 261 --AF------NLSCK---------ILLT--TRFKQVTDFLSAATTTHISLDH---HSMTL 298
Query: 352 TEKNVVVWTALFSGYVKAQNC-------EA------LFDLLSEFVTKEGVVT-------- 390
T V +L Y+ +C E +++E + ++G+ T
Sbjct: 299 TPDEVK---SLLLKYL---DCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVN 351
Query: 391 -DALILVILLGACALQAALHPGKEIHAY----ILRMGVQMDKKLISTL---------VDM 436
D L +I + L P + + + + L+S + + +
Sbjct: 352 CDKLTTII--ESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 437 YSKCGN----------MTYAEI--IFQNF---IERDLVLYNVMIACY------------- 468
+K T I I+ +E + L+ ++ Y
Sbjct: 408 VNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 469 -----------AHH----GHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGE 513
HH H E+ + LF + + F + RH +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPER-MTLFRMVF--------LDFRFLEQKIRHDSTAWNAS 517
Query: 514 KYFNSMTAD---YK--ISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFL 568
+ YK I Y +++ ++F +P E+ +I +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAI---------LDF---LPKIEENLICSKYT 565
Query: 569 NVCRL---NRNAELAGEAEEKLLR 589
++ R+ + + EA +++ R
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQR 589
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 47/305 (15%), Positives = 92/305 (30%), Gaps = 31/305 (10%)
Query: 222 NDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEI 281
+ L Y GD L + N + L+A C ++
Sbjct: 115 GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY----NRSSACRYLAAFCLVKLYD----- 165
Query: 282 HSWVLKNGLISNPFVSSG--IVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQG 339
L +NPF + + + SM L+G Y+
Sbjct: 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ-----------VYTNLS 214
Query: 340 NMEEARRHFD---SLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILV 396
N + A+ + + K + L S ++ + E L + T L +
Sbjct: 215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274
Query: 397 ILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER 456
+L + G++ L+ D I +E
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
Query: 457 D---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMG 512
D L +Y + +A G + K L+ ++++ P+ AVT++A+ + +
Sbjct: 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEA 392
Query: 513 EKYFN 517
+YF+
Sbjct: 393 RRYFS 397
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 676 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.47 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.31 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.31 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.21 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.18 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.12 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.11 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.1 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.08 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.9 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.81 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.78 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.71 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.61 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.61 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.59 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.5 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.47 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.45 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.44 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.42 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.36 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.27 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.23 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.22 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.21 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.2 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.19 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.19 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.15 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.09 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.06 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.04 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.0 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.98 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.97 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.94 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.89 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.87 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.72 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.62 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.52 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.43 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.27 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.23 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.04 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.02 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.0 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.97 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.9 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.75 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.74 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.6 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.25 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.77 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.64 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.48 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.47 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.41 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.22 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.13 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.13 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.02 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.41 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.19 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.76 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.09 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 89.7 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.62 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.97 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.76 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.34 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.3 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.79 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.47 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 85.91 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 84.84 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.36 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.32 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.57 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.78 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=349.85 Aligned_cols=501 Identities=9% Similarity=-0.055 Sum_probs=269.1
Q ss_pred HHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHH
Q 005802 66 CIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGR 145 (676)
Q Consensus 66 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 145 (676)
..+.|.+..+...+..++.++...|+.++..+.+.|++. +|+.+|++|.. ..|+..++..+..+|...|+++.|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYK-CAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCch-HHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 455677777777787777778888888888888888888 88888888875 5677778888888888888888888
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCee
Q 005802 146 QLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAV 225 (676)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 225 (676)
.+++.+... .++..+++.++.+|.+.|++++|.++|+++...... ...+.+.+..+ . ...++..
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~-------~-~~~~~~~ 201 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD------EKNANKLLMQD-------G-GIKLEAS 201 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------------CCC-------S-SCCHHHH
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc------ccccccccccc-------c-ccchhHH
Confidence 888776543 344456666666666666666666666643221100 00000000000 0 0023567
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHH--HH-HHHHHHhCCCCchhHHHHHH
Q 005802 226 SWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAK--EI-HSWVLKNGLISNPFVSSGIV 301 (676)
Q Consensus 226 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~ 301 (676)
+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..+...+...+..+.+. .+ +..+...+..+...+++.++
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 78888888888888888888888887743 433 33443433333222221111 11 22222223233333444445
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC--CCchhHHHHHHHHHHcCChHHHHHHH
Q 005802 302 DVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE--KNVVVWTALFSGYVKAQNCEALFDLL 379 (676)
Q Consensus 302 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 379 (676)
..|.+.|++++|. ++|+++.+ ++..+|+.++..|.+.|++++|+.+|
T Consensus 280 ~~~~~~g~~~~A~-------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 280 NKTSHEDELRRAE-------------------------------DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp CTTTTHHHHHHHH-------------------------------HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCcchHHHHH-------------------------------HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555555555555 55555444 44455555555555555555555555
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CC
Q 005802 380 SEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ER 456 (676)
Q Consensus 380 ~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~ 456 (676)
++++... +.+..++..++.++...|+.++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++. ..
T Consensus 329 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 329 TKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp HHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 5552211 2244445555555555555555555555554332 3445555555555555555555555555543 22
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMI 536 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 536 (676)
+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..++
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 482 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELG 482 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 34455556666666666666666666555532 224455555555566666666666666655432 122355555666
Q ss_pred HHHhhcCCHHHHHHHHHhCC-------CCCc--HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 537 DLYGRANQLEKAIEFMKSIP-------TEED--AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|...|++++|+..++++.+..|+++..|..++.+|.+
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 66666666666666555553 1343 44555566666666666666666666665556555566666666666
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 005802 608 EGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 608 ~g~~~~A~~~~~~~~~~~~ 626 (676)
.|++++|.+.++++.+..+
T Consensus 563 ~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAISP 581 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCT
T ss_pred hCCHHHHHHHHHHHHhcCC
Confidence 6666666666665555433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=330.53 Aligned_cols=449 Identities=10% Similarity=0.003 Sum_probs=358.3
Q ss_pred CChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC-CCchhhHHHHHHH
Q 005802 123 MDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE-EVNLISKNAMVAA 201 (676)
Q Consensus 123 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 201 (676)
++...|+.++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+.. +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 57788999999999999999999999999865 45667888888999999999999999887754 5677888888888
Q ss_pred HHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHH
Q 005802 202 CCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEI 281 (676)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 281 (676)
|.+.|++++|+++|+++. +.+.. ..++.+.+. ...|.+++..++..++.++.+.|++++|.++
T Consensus 160 ~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETN-PFRKD-----EKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp HHHTTCHHHHHHHHCSSC-TTC---------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHhccC-Ccccc-----ccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888543 11110 011111111 1235666788999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHH-HhccCC----CCc
Q 005802 282 HSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRH-FDSLTE----KNV 356 (676)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~----~~~ 356 (676)
|+++.+.+. .+...+..+...+...+..+.+. .. .+ +..+.. ...
T Consensus 223 ~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~--~~---------------------------~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 223 YKEALMVDA-KCYEAFDQLVSNHLLTADEEWDL--VL---------------------------KLNYSTYSKEDAAFLR 272 (597)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHH--HH---------------------------HSCTHHHHGGGHHHHH
T ss_pred HHHHHHhCc-hhhHHHHHHHHhhcccchhHHHH--HH---------------------------hcCCcccccchHHHHH
Confidence 999988752 24445555554443332222111 00 00 111111 123
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDM 436 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 436 (676)
..|+.++..|.+.|++++|..+|+++ ... +++..++..++..+.+.|++++|..+++.+.+.+ +.+..++..++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 348 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSI-NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLAS 348 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTS-TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHh-hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHH
Confidence 45666788888999999999999998 332 6899999999999999999999999999999876 5578889999999
Q ss_pred HHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHH
Q 005802 437 YSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 437 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 513 (676)
|.+.|++++|..+++.+. ..+..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999875 3467899999999999999999999999998842 335779999999999999999999
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL- 590 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 590 (676)
++|+++.+. .+++..+|..++.+|.+.|++++|.++|+++. .+.++.+|..++.+|...|++++|+..++++.+.
T Consensus 428 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 999999753 23468899999999999999999999999987 5668899999999999999999999999999988
Q ss_pred -----cCCC-CccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 591 -----EGNN-KARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 591 -----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
.|++ ...|..++.+|.+.|++++|.+.++++.+.++.
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4443 568999999999999999999999999887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-25 Score=222.98 Aligned_cols=368 Identities=13% Similarity=0.065 Sum_probs=253.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 005802 233 GYVQNGDAEEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMN 311 (676)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 311 (676)
.+.+.|++++|...++.+... .|+. ..+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 345556666666666655542 2332 333344444555666666666665555543 334555666666666666666
Q ss_pred HHHHHHHhcCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005802 312 YAESMLLLKGV--R-NSFSISSMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWTALFSGYVKAQNCEALFDLLSEFVTK 385 (676)
Q Consensus 312 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 385 (676)
+|...|++... | +..+|..+...+...|++++|.+.|+++.+ | +...+..+...+...|++++|...|++++..
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66655554432 2 233455555556666666666666666543 3 3345666677777778888888888776433
Q ss_pred CCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHH
Q 005802 386 EGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYN 462 (676)
Q Consensus 386 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 462 (676)
.+.+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|++.. +.+..++.
T Consensus 165 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 165 --QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 23345667777777777788888887777777764 4456677777888888888888888887654 23566788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR 541 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 541 (676)
.+...+...|++++|.+.|+++.+. .| +..++..+..++.+.|++++|...++++.+. .+++..++..+...+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 8888888888888888888888874 34 4567788888888888888888888888753 23447788888888888
Q ss_pred cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 542 ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
.|++++|.+.++++. .+.+..++..++.++...|++++|...++++++..|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 888888888888877 344667788888888888888888888888888888888888888888877663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-25 Score=220.44 Aligned_cols=350 Identities=15% Similarity=0.093 Sum_probs=305.3
Q ss_pred HHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHH
Q 005802 266 LSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNME 342 (676)
Q Consensus 266 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 342 (676)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|+++.|...+..... .+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455677899999999999998875 34566777888899999999999998876554 45678999999999999999
Q ss_pred HHHHHHhccCC--C-CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhcChhHHHHHHHHH
Q 005802 343 EARRHFDSLTE--K-NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQAALHPGKEIHAYI 418 (676)
Q Consensus 343 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 418 (676)
+|++.|+++.. | +..+|..+..++.+.|++++|+..|++++.. .|+ ...+..+...+...|++++|...+..+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999998864 4 4557999999999999999999999998543 344 445666777788899999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHh
Q 005802 419 LRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAV 494 (676)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ 494 (676)
.+.. +.+..++..+...+.+.|++++|...|+++. .| +...|..+...+...|++++|...+++.... .| +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 8875 5567889999999999999999999999886 33 5668889999999999999999999999884 45 477
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVC 571 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 571 (676)
++..+..++...|++++|...++++.+. .|+ ...|..++.++.+.|++++|.+.++++. .+++..++..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 8889999999999999999999999753 455 7889999999999999999999999987 667888999999999
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
...|++++|...++++.+..|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=236.70 Aligned_cols=214 Identities=11% Similarity=0.117 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHhCCCCCcH-hHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 005802 241 EEGLKLFVRMGENGVRWNE-HTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 241 ~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 319 (676)
..+..+.+.+.++++.+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~----- 81 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS----- 81 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS-----
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh-----
Confidence 3455566777777765543 4578888999999999999999999999999999988888888887765443221
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHH
Q 005802 320 KGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILL 399 (676)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 399 (676)
+.+..+.|.++|++| ...|+.||..||+.+|
T Consensus 82 ------------------------------------------------~~~~l~~A~~lf~~M-~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 82 ------------------------------------------------PNPGLSRGFDIFKQM-IVDKVVPNEATFTNGA 112 (501)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHH-HHTTCCCCHHHHHHHH
T ss_pred ------------------------------------------------hcchHHHHHHHHHHH-HHhCCCCCHHHHHHHH
Confidence 234467888899999 8889999999999999
Q ss_pred HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHH
Q 005802 400 GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAIL 479 (676)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 479 (676)
.+|++.|++++|..+++.|.+.|+.||..+|+++|.+|++. |++++|.+
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~-------------------------------g~~~~A~~ 161 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK-------------------------------GDADKAYE 161 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-------------------------------TCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC-------------------------------CCHHHHHH
Confidence 99999999999999999999988888777666665555554 44455555
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh
Q 005802 480 LFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540 (676)
Q Consensus 480 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 540 (676)
+|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+. +..|+..||+.++..+.
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555444 55555555555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=233.01 Aligned_cols=184 Identities=11% Similarity=0.165 Sum_probs=165.8
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCC---------hHHHHHHHHHHHHhCCCCchh
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRN---------VKCAKEIHSWVLKNGLISNPF 295 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 295 (676)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccC----CCCchhHHHHHHHHHHcCC
Q 005802 296 VSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLT----EKNVVVWTALFSGYVKAQN 371 (676)
Q Consensus 296 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~ 371 (676)
+|+.+|.+|++.|+++.|. ++|++|. .||..+||++|.+|++.|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~-------------------------------~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAF-------------------------------DMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHH-------------------------------HHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCHHHHH-------------------------------HHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 9999999999988888888 5555554 4788999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 372 CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
+++|.++|++| ...|+.||..||+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 156 ~~~A~~l~~~M-~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 156 ADKAYEVDAHM-VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999 888999999999999999999999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=210.59 Aligned_cols=427 Identities=11% Similarity=-0.003 Sum_probs=299.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC
Q 005802 193 ISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG 271 (676)
Q Consensus 193 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 271 (676)
..+......+.+.|++++|+..|+++.. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 3455566677777777777777766543 4566677777777777777777777777776643 2244566677777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCchhHHHH---HHHHHhcCCHHHH
Q 005802 272 LRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV----RNSFSISSM---IVGYSLQGNMEEA 344 (676)
Q Consensus 272 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l---i~~~~~~~~~~~a 344 (676)
.|++++|...++.+.+.+. ++......++..+.+......+.+.+..+.. ++...+... .............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 7777777777777776653 3333333444433333222222222211100 000000000 0000001111111
Q ss_pred HHHHhccCC---------C-CchhHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCCC-------CCCHhHHHHHH
Q 005802 345 RRHFDSLTE---------K-NVVVWTALFSGYVK---AQNCEALFDLLSEFVT-----KEGV-------VTDALILVILL 399 (676)
Q Consensus 345 ~~~~~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~-------~p~~~~~~~ll 399 (676)
...+..... | +...+......+.. .|++++|+..|++++. .... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 122222211 1 13334444444444 8999999999999854 2111 22345677778
Q ss_pred HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhH
Q 005802 400 GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEK 476 (676)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 476 (676)
..+...|+++.|...++.+.+.... ...+..+...|...|++++|...++.+.+ .+...|..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999887644 88888999999999999999999998753 366788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 477 AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|...+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.+.|++++|.+.++++.
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999853 2356788889999999999999999999997641 2247788899999999999999999999876
Q ss_pred ----CCCc----HHHHHHHHHHHHH---hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 557 ----TEED----AVILGSFLNVCRL---NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 557 ----~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
..++ ...+..++.++.. .|++++|...++++.+..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 1222 3388889999999 9999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 005802 626 G 626 (676)
Q Consensus 626 ~ 626 (676)
+
T Consensus 480 ~ 480 (514)
T 2gw1_A 480 R 480 (514)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-22 Score=209.71 Aligned_cols=241 Identities=7% Similarity=-0.062 Sum_probs=199.3
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005802 356 VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVD 435 (676)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (676)
...+..+...+...|++++|+..|++++... |+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 3467778888888999999999999874432 337777888888889999999999998887764 456778888999
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHH
Q 005802 436 MYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMG 512 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 512 (676)
.|...|++++|...|+... ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998764 3356788889999999999999999999998752 33567788888999999999999
Q ss_pred HHHHHHchhhcCCCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 513 EKYFNSMTADYKISPE----TDHYACMIDLYGR---ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
...++.+.....-.|+ ...+..+...+.. .|++++|.+.++++. .+.+...+..+..++...|++++|...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998754222232 3488899999999 999999999999887 555778889999999999999999999
Q ss_pred HHHHHcccCCCCccHHHH
Q 005802 584 EEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 584 ~~~~~~~~p~~~~~~~~l 601 (676)
++++.+..|+++..+..+
T Consensus 472 ~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 472 FEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHhccccHHHHHHH
Confidence 999999999988776665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=204.88 Aligned_cols=422 Identities=13% Similarity=0.039 Sum_probs=291.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 005802 193 ISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACC 270 (676)
Q Consensus 193 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 270 (676)
..+..+...+.+.|++++|+..|++... +.+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4455566667777777777777765432 3456667777777777777777777777777643 224556666777777
Q ss_pred CCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCC------CchhHHHHHHHHHhcCCHHHH
Q 005802 271 GLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVR------NSFSISSMIVGYSLQGNMEEA 344 (676)
Q Consensus 271 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a 344 (676)
..|++++|...++ .... .|+. ....+..+...+....|...++..... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 7777777777775 2222 1221 112233444444556666666665442 122334455556666777777
Q ss_pred HHHHhccCCCCch---hHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCC-----HhHHHHHHHHHHhhcCh
Q 005802 345 RRHFDSLTEKNVV---VWTALFSGYVK--------AQNCEALFDLLSEFVTKEGVVTD-----ALILVILLGACALQAAL 408 (676)
Q Consensus 345 ~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~ 408 (676)
...+......+.. ....+...+.. .|++++|+.++++++....-.++ ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 7777666654433 22333322222 24788888888887332211111 22455566677788899
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
+.|...+..+.+.. |+...+..+...+...|++++|...|+++. ..+..+|..+...+...|++++|...+++..
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999998888865 447788888889999999999999998775 3456788889999999999999999999998
Q ss_pred HCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----
Q 005802 486 EKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE---- 559 (676)
Q Consensus 486 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---- 559 (676)
+.. +.+...+..+...+...|++++|...++++... .|+ ...+..+...+...|++++|.+.++++. ..|
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 853 224667888888999999999999999998764 344 7788889999999999999999998876 111
Q ss_pred ---cHHHHHHHHHHHHHh----------CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 560 ---DAVILGSFLNVCRLN----------RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 560 ---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
....+.....++... |++++|+..++++.+..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 112244455667777 9999999999999999999999999999999999999999999999887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=194.55 Aligned_cols=335 Identities=13% Similarity=0.068 Sum_probs=231.3
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005802 223 DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVD 302 (676)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (676)
+...+..+...+.+.|++++|+.+|+.+.... +.+..++..+..++...|+++.|...++.+.+.+. .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 44556666666777777777777777666532 23455566666666666666666666666665531 22333333333
Q ss_pred HHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCC---c---hhHHHHHHHHHHcCChHHHH
Q 005802 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKN---V---VVWTALFSGYVKAQNCEALF 376 (676)
Q Consensus 303 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~li~~~~~~~~~~~a~ 376 (676)
+|.+.|+++. |.+.|+++.+.+ . ..+..++..+...
T Consensus 103 ~~~~~g~~~~-------------------------------A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 144 (450)
T 2y4t_A 103 LLLKQGKLDE-------------------------------AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ------- 144 (450)
T ss_dssp HHHHTTCHHH-------------------------------HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHcCCHHH-------------------------------HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------
Confidence 3333333333 336665554322 1 3344443331110
Q ss_pred HHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 005802 377 DLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI-- 454 (676)
Q Consensus 377 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 454 (676)
.+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++.
T Consensus 145 -----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 145 -----------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp -----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11122333556667777777777666654 4566777778888888888888888888765
Q ss_pred -CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-hHHHHH------------HHHhhccCcHHHHHHHHHHch
Q 005802 455 -ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA-VTFVAI------------LSAFRHCGSVEMGEKYFNSMT 520 (676)
Q Consensus 455 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l------------l~~~~~~g~~~~a~~~~~~~~ 520 (676)
+.+..+|..+...+...|++++|+..|+++... .|+. ..+..+ ...|...|++++|...|+.+.
T Consensus 207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346778888889999999999999999998874 4543 334333 778899999999999999998
Q ss_pred hhcCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 521 ADYKISPE-----TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 521 ~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
.. .|+ ...+..++.++.+.|++++|++.++++. .+.+...|..++.+|...|++++|...++++++..|+
T Consensus 285 ~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 285 KT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred hc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 64 344 4578889999999999999999999987 5567889999999999999999999999999999999
Q ss_pred CCccHHHHHHH------------HHhcC-----ChhHHHHHHHH
Q 005802 594 NKARYVQLANV------------YAAEG-----NWAEMGRIRKQ 620 (676)
Q Consensus 594 ~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 620 (676)
++..+..++.+ |...| +.+++.+.+++
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999844 55555 55677777775
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-20 Score=188.77 Aligned_cols=377 Identities=11% Similarity=0.042 Sum_probs=240.8
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC--CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHH
Q 005802 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPE--LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASAL 266 (676)
Q Consensus 189 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 266 (676)
+.+...+..+...+.+.|++++|+..|+++.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45677889999999999999999999987653 4577889999999999999999999999998854 23567888899
Q ss_pred HHHhCCCChHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 005802 267 SACCGLRNVKCAKEIHSWVLKNGLISNP---FVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEE 343 (676)
Q Consensus 267 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (676)
..+...|++++|...++.+.+... .+. ..+..+...+...+ +..+...+...|++++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHH
Confidence 999999999999999999987642 233 45555555443321 2223334555566666
Q ss_pred HHHHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 005802 344 ARRHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILR 420 (676)
Q Consensus 344 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 420 (676)
|...|+++.+ .+...+..+...|.+.|++++|+..|++++.. .+.+..++..+...+...|++++|...++.+.+
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665555432 23444555555555555555555555554222 122334444444444444444444444444443
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----HhH
Q 005802 421 MGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-----AVT 495 (676)
Q Consensus 421 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~ 495 (676)
.. +.+...+..+.... ....+..+...+...|++++|...|+++.+. .|+ ...
T Consensus 240 ~~-p~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~ 297 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVK-------------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRS 297 (450)
T ss_dssp HC-TTCHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred hC-CChHHHHHHHHHHH-------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHH
Confidence 22 11111111110000 0001122367788888888888888888873 454 336
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHH--
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNV-- 570 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-- 570 (676)
+..+..++.+.|++++|...++.+... .| +...|..+..+|...|++++|.+.++++. ..| ++..+..+..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 677778888888888888888887643 34 47888888888888888888888888876 334 45555555532
Q ss_pred ----------HHHhC-----CHhHHHHHHHH-HHcccCCCCc----------cHHHHHHHHHhcCChhH
Q 005802 571 ----------CRLNR-----NAELAGEAEEK-LLRLEGNNKA----------RYVQLANVYAAEGNWAE 613 (676)
Q Consensus 571 ----------~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 613 (676)
|...| +.+++.+.+++ +.+..|++.. .+..++.+|...|+.++
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22333 56777888886 6667776432 34455555555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-20 Score=196.29 Aligned_cols=428 Identities=10% Similarity=-0.019 Sum_probs=287.5
Q ss_pred hhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHHHHH
Q 005802 125 EFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMVAAC 202 (676)
Q Consensus 125 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 202 (676)
...+..+...+.+.|+++.|...++.+.+.. +.+...+..+..+|.+.|++++|.+.++++.. +.+...+..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3456777777788888888888888887763 12334566677777777777777777765544 33445555566666
Q ss_pred HhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCcHhHHHHHHHHHhCCCChH
Q 005802 203 CREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGEN------GVRWNEHTFASALSACCGLRNVK 276 (676)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~ 276 (676)
...|++++|+..|+.+...|+ ..+..+..+...+....|...++.+... ...|+...
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~--------------- 166 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS--------------- 166 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH---------------
T ss_pred HHcCCHHHHHHHHHHHhcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH---------------
Confidence 666666666666643332222 1122233333444445555555555432 11122222
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCch---hHHHHHHHHH--------hcCCHHHHH
Q 005802 277 CAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSF---SISSMIVGYS--------LQGNMEEAR 345 (676)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~--------~~~~~~~a~ 345 (676)
+..+....+.+.+...+......+.. ....+...+. ..|++++|.
T Consensus 167 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 167 ------------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ------------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 22222333333333333322222211 1111111111 125677888
Q ss_pred HHHhccCCCCc----------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHH
Q 005802 346 RHFDSLTEKNV----------VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIH 415 (676)
Q Consensus 346 ~~~~~~~~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 415 (676)
.+++++.+.++ .++..+...+...|++++|+..|++.+.. .|+...+..+...+...|+++.|...+
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 88887765322 24666677888899999999999998443 455777888888888999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005802 416 AYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD 492 (676)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 492 (676)
..+.+.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+...|++++|...++++.+.. +.+
T Consensus 300 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 377 (537)
T 3fp2_A 300 QKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTL 377 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9988875 5567889999999999999999999999875 3356789999999999999999999999999853 334
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC----CHHHHHHHHHHHhhc----------CCHHHHHHHHHhCC--
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP----ETDHYACMIDLYGRA----------NQLEKAIEFMKSIP-- 556 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~-- 556 (676)
...+..+...+...|++++|...++++.....-.+ ....+..+..++.+. |++++|...++++.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 66888889999999999999999999865421111 123345556777788 99999999999987
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
.+.+...+..+..++...|++++|...++++.+..|.++....
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 5567888999999999999999999999999999998766544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-16 Score=172.08 Aligned_cols=564 Identities=12% Similarity=0.090 Sum_probs=375.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCcccHHHHHHHHHhCCCchHHHHHhccCCC---------------CCcchHHHHHHHHHhc
Q 005802 5 NLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPE---------------RNVFSWNTIISACIKS 69 (676)
Q Consensus 5 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~ll~~~~~~ 69 (676)
+.+.+++++..|.+.+++.+....-.+...|...=..+...++|++... .|+.+....|.+.++.
T Consensus 659 ~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~ 738 (1630)
T 1xi4_A 659 SVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKT 738 (1630)
T ss_pred CHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHh
Confidence 4678888999999877776665555555555555456666666666542 5788899999999999
Q ss_pred CChHHHHHHhccCC---------------CCCc---------ccH-HHHHHHHHhcCCChhHHHHHHHHhHhccCCCC--
Q 005802 70 HDLKQARSLFDSSP---------------HKDL---------VTY-NSMLCGYINAEGYEADALKLFIEMQSADEHIR-- 122 (676)
Q Consensus 70 g~~~~A~~~~~~~~---------------~~~~---------~~~-~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~-- 122 (676)
|.+.+.+++.++-. -||. ..| .-|+.-+.++ +.. .-+++|-.=.. ..-.
T Consensus 739 ~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n-~~~-~~ie~yv~~vn--p~~~p~ 814 (1630)
T 1xi4_A 739 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRN-NLQ-KYIEIYVQKVN--PSRLPV 814 (1630)
T ss_pred CCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhc-Cch-hHHHHHHhccC--Ccccch
Confidence 99999888886543 0221 111 1222222222 222 22333311111 1111
Q ss_pred ---------CChhhHHHHHHHH-------------HccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHH-
Q 005802 123 ---------MDEFTVTSTLNLC-------------VKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEA- 179 (676)
Q Consensus 123 ---------p~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A- 179 (676)
-+......++..- -+.+++...+..++.-...| ..+..++++|...|...++-.+.
T Consensus 815 Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~f 893 (1630)
T 1xi4_A 815 VIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERF 893 (1630)
T ss_pred hhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHH
Confidence 1222233333322 22222222233333333333 44566899999999865543322
Q ss_pred ------------HHhhhhcCCCCch--hhH------HHHHHHHHhcCChhHHHH-HHhh---------------------
Q 005802 180 ------------CRVFEGCTEEVNL--ISK------NAMVAACCREGEMEMALK-TFWR--------------------- 217 (676)
Q Consensus 180 ------------~~~~~~~~~~~~~--~~~------~~l~~~~~~~g~~~~A~~-~~~~--------------------- 217 (676)
-+..++- +|.. ..| .-|++.+-+.|.+...-+ +.++
T Consensus 894 L~~n~~yd~~~vgkyce~r--Dp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Li 971 (1630)
T 1xi4_A 894 LRENPYYDSRVVGKYCEKR--DPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLI 971 (1630)
T ss_pred hhccCcccHHHHHHHHHhc--CcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHH
Confidence 1222221 1111 011 224444444433332211 1111
Q ss_pred -------CCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 005802 218 -------QPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGV--RWNEHTFASALSACCGLRNVKCAKEIHSWVLKN 288 (676)
Q Consensus 218 -------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 288 (676)
+++..++.--...+.+|...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +..+..++......
T Consensus 972 dqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~- 1049 (1630)
T 1xi4_A 972 DQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN- 1049 (1630)
T ss_pred HHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-
Confidence 11122333345567788899999999999999874321 01223444455555555 55666666555431
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 005802 289 GLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVK 368 (676)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 368 (676)
.....+...+...|.+++|..+|++... .....+.+ +...+++++|.++.++.. +..+|..+..++..
T Consensus 1050 ------~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1050 ------YDAPDIANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred ------ccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 1234477788889999999999999752 22222333 237889999999999875 46688999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 005802 369 AQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEI 448 (676)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 448 (676)
.|++++|+..|.+. -|...|..++.+|.+.|+++++.+++....+.. +++...+.++.+|++.+++++...
T Consensus 1118 ~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred CCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 99999999999762 577888899999999999999999999888765 444445569999999999996555
Q ss_pred HHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC
Q 005802 449 IFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE 528 (676)
Q Consensus 449 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 528 (676)
.. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +
T Consensus 1189 fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n 1249 (1630)
T 1xi4_A 1189 FI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------S 1249 (1630)
T ss_pred HH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------C
Confidence 43 4556677888999999999999999999985 479999999999999999999998773 5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 608 (676)
..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++.++.++|.+...|.-|+.+|.+.
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 688999999999999999999987764 456667778999999999999999999999999999999998888888764
Q ss_pred --CChhHHHHHHH
Q 005802 609 --GNWAEMGRIRK 619 (676)
Q Consensus 609 --g~~~~A~~~~~ 619 (676)
++..++.+.+.
T Consensus 1328 ~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1328 KPQKMREHLELFW 1340 (1630)
T ss_pred CHHHHHHHHHHHH
Confidence 34555555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-16 Score=167.38 Aligned_cols=200 Identities=13% Similarity=0.002 Sum_probs=96.0
Q ss_pred chhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCC
Q 005802 161 FAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGD 239 (676)
Q Consensus 161 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 239 (676)
.+|..+..++...|++++|+..|.+. .+...|..++..+.+.|++++|.+.+..... .+++...+.++.+|++.++
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 34555555555555555555555442 2444444455555555555555555533221 1222222335555555555
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 005802 240 AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLL 319 (676)
Q Consensus 240 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 319 (676)
+++...+. . .|+...+..+...|...|+++.|..+|..+ ..|..+..+|.+.|+++.|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44322221 1 133344444555555555555555555542 2455555555555555555555544
Q ss_pred cCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 320 KGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
. .+..+|..+..+|...|++..|......+ .-++..+..++..|.+.|.+++|+.+++..
T Consensus 1247 A--~n~~aWkev~~acve~~Ef~LA~~cgl~I-iv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1247 A--NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred h--CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 23345555555555555555555544431 123334445555566666666666666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.2e-18 Score=168.37 Aligned_cols=301 Identities=12% Similarity=0.023 Sum_probs=199.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHH
Q 005802 294 PFVSSGIVDVYCKCENMNYAESMLLLKGV---RNSFSISSMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWTALFSGYV 367 (676)
Q Consensus 294 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~ 367 (676)
+..+..+...+...|+++.|...+..... .+...+..+...+...|++++|...|+++.+ | +...|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34455566666666666666666554432 2234444555555555555555555554432 1 3334455555555
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC---C-HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 005802 368 KAQNCEALFDLLSEFVTKEGVVT---D-ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNM 443 (676)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (676)
..|++++|+..|++.+ . ..| + ...+..+..... ...+..+...+...|++
T Consensus 83 ~~~~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVL-K--SNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHH-T--SCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHH-h--cCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 5555555555555541 1 122 1 111111100000 00112235677888888
Q ss_pred HHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHch
Q 005802 444 TYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMT 520 (676)
Q Consensus 444 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 520 (676)
++|...++++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888765 3356678888888889999999999999888753 3356778888888888999999999998887
Q ss_pred hhcCCCCC-HHHHH------------HHHHHHhhcCCHHHHHHHHHhCC--CCCcHH----HHHHHHHHHHHhCCHhHHH
Q 005802 521 ADYKISPE-TDHYA------------CMIDLYGRANQLEKAIEFMKSIP--TEEDAV----ILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 521 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~a~ 581 (676)
+. .|+ ...+. .+...+.+.|++++|.+.++++. .+.++. .+..+..++...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 54 344 33332 23667889999999999998877 333332 3445677889999999999
Q ss_pred HHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 582 EAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 582 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
..++++.+..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-17 Score=164.00 Aligned_cols=321 Identities=13% Similarity=0.050 Sum_probs=217.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005802 225 VSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVY 304 (676)
Q Consensus 225 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (676)
..+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~------ 75 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARL------ 75 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHH------
Confidence 345556666667777777777777766532 1234555666666666666666666666666553 12333444
Q ss_pred HhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCc------hhHHHHHHHHHHcCChHHHHHH
Q 005802 305 CKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNV------VVWTALFSGYVKAQNCEALFDL 378 (676)
Q Consensus 305 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~ 378 (676)
.+...+...|++++|...|+++.+.++ ..+..+.... .
T Consensus 76 -------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~---- 119 (359)
T 3ieg_A 76 -------------------------QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E---- 119 (359)
T ss_dssp -------------------------HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----
T ss_pred -------------------------HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----
Confidence 444445555555555588887765333 2232221100 0
Q ss_pred HHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 005802 379 LSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--- 455 (676)
Q Consensus 379 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 455 (676)
...+..+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 120 -------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 120 -------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred -------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 0112223344555566666666666655543 44566677777888888888888888877653
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHH------------HHHHHhhccCcHHHHHHHHHHchhh
Q 005802 456 RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFV------------AILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
.+...+..+...+...|++++|...+++..+. .|+ ...+. .+...+...|++++|...++.+...
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35667888888888889999999988888874 343 23222 2355688899999999999999865
Q ss_pred cCCCCC-H----HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 523 YKISPE-T----DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 523 ~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.|+ . ..+..+..++.+.|++++|++.++++. .+.++..+..+..++...|++++|...++++++.+|+++
T Consensus 264 ---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 264 ---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred ---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 344 2 335568889999999999999999887 555788999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhc
Q 005802 596 ARYVQLANVYAAE 608 (676)
Q Consensus 596 ~~~~~l~~~~~~~ 608 (676)
..+..|..++...
T Consensus 341 ~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 341 QIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-17 Score=159.61 Aligned_cols=275 Identities=10% Similarity=0.032 Sum_probs=168.2
Q ss_pred HHHHhcCCHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhc-Ch
Q 005802 333 VGYSLQGNMEEARRHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQA-AL 408 (676)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~ 408 (676)
..+...|++++|.++|+++.+ .+...+..++..+...|++++|...+++++... +.+...+..+...+...| ++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhH
Confidence 333333444444455444432 233344555555566666666666666653321 223344555555555555 56
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
++|...++.+.+.. +.+...+..+...+...|++++|...|++.. +.+...+..+...+...|++++|.+.+++..
T Consensus 108 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 108 EHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665555443 3345556666666777777777776666654 2234556667777777777777777777777
Q ss_pred HCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC-------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 005802 486 EKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK-------ISPETDHYACMIDLYGRANQLEKAIEFMKSIP-- 556 (676)
Q Consensus 486 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 556 (676)
+.. +.+...+..+...+...|++++|...++++..... .+.....+..+..++.+.|++++|.+.++++.
T Consensus 187 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 187 SIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 642 23456666677777777777777777777654311 02225677777777777777777777777765
Q ss_pred CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH-HhcCCh
Q 005802 557 TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY-AAEGNW 611 (676)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 611 (676)
.+.+...+..+..++...|++++|...++++.+..|+++..+..++.++ ...|+.
T Consensus 266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 4446667777777777777777777777777777777777777777776 344443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-17 Score=159.23 Aligned_cols=266 Identities=13% Similarity=0.086 Sum_probs=229.2
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHH
Q 005802 354 KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTL 433 (676)
Q Consensus 354 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 433 (676)
.+...+..+...+...|++++|+.+|++++... +.+...+..+...+...|++++|..++..+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 466678888999999999999999999985443 3344566667788889999999999999998865 5567888899
Q ss_pred HHHHHhcC-CHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 434 VDMYSKCG-NMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 434 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
...+...| ++++|...|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998763 356789999999999999999999999999853 22456677788999999999
Q ss_pred HHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--C---------CCcHHHHHHHHHHHHHhCCH
Q 005802 510 EMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--T---------EEDAVILGSFLNVCRLNRNA 577 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~---------~~~~~~~~~l~~~~~~~~~~ 577 (676)
++|...++++.. ..|+ ...+..+...+.+.|++++|...++++. . +.....+..+..++...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999974 3455 7889999999999999999999998876 1 34567899999999999999
Q ss_pred hHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 578 ELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++|...++++.+..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999998776543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=164.70 Aligned_cols=278 Identities=10% Similarity=-0.011 Sum_probs=206.2
Q ss_pred CCHHHHHH-HHhccCC--C-----CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhH
Q 005802 339 GNMEEARR-HFDSLTE--K-----NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHP 410 (676)
Q Consensus 339 ~~~~~a~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 410 (676)
|++++|.+ .+++... + +...+..+...+.+.|++++|+..|++++.. .+.+...+..+...+...|++++
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 44555555 5554432 1 2345666777777777777777777776332 23455566666777777777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHH---------------HHHHHHHcC
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNV---------------MIACYAHHG 472 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~ 472 (676)
|...++.+.+.. +.+..++..+...|...|++++|...++++.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777777664 44666777777777777888877777776542 2 2222211 233344889
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIE 550 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 550 (676)
++++|...++++.+..... +..++..+...+...|++++|...++++... .|+ ...+..+...+.+.|++++|++
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999853221 4778889999999999999999999999754 454 7889999999999999999999
Q ss_pred HHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-----------CccHHHHHHHHHhcCChhHHHHH
Q 005802 551 FMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-----------KARYVQLANVYAAEGNWAEMGRI 617 (676)
Q Consensus 551 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 617 (676)
.++++. .+.+...+..+..++...|++++|...++++++..|++ +..|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 999987 55678899999999999999999999999999998887 78899999999999999999998
Q ss_pred HHHHH
Q 005802 618 RKQMR 622 (676)
Q Consensus 618 ~~~~~ 622 (676)
+++..
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 87443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-15 Score=158.54 Aligned_cols=356 Identities=13% Similarity=0.080 Sum_probs=231.1
Q ss_pred cCChhHHHHHHhhCCCCCCeeeHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC----CCChH
Q 005802 205 EGEMEMALKTFWRQPELNDAVSWNTLISGYVQ----NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG----LRNVK 276 (676)
Q Consensus 205 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~ 276 (676)
.++.++|...|++.....+..++..|...|.. .+++++|+..|++..+.| +...+..+...+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 44555555554443323344444445455554 555555555555555433 22333333334433 44555
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC-CC
Q 005802 277 CAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE-KN 355 (676)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~ 355 (676)
+|...++...+.| ++..+..+...|.... ...++.++|.+.|++..+ .+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~---------------------------g~~~d~~~A~~~~~~a~~~~~ 182 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGD---------------------------GVTRDYVMAREWYSKAAEQGN 182 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---------------------------CCCCCHHHHHHHHHHHHHCCC
Confidence 5555555554443 2333333333343300 003445555566555433 34
Q ss_pred chhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCCh
Q 005802 356 VVVWTALFSGYVK----AQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDK 427 (676)
Q Consensus 356 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 427 (676)
...+..+...|.. .++.++|+.+|++. ...+ +...+..+...+.. .++.++|...++...+.+ +.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKS-ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 5556666666666 67777777777776 3332 34455555555554 667777777777776654 34
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHhHHH
Q 005802 428 KLISTLVDMYSK----CGNMTYAEIIFQNFIER-DLVLYNVMIACYAHH-----GHEEKAILLFEEMLEKGIKPDAVTFV 497 (676)
Q Consensus 428 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~ 497 (676)
..+..+...|.. .+++++|...|++..+. +...+..+...|... +++++|+.+|++..+.| +...+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 555666667766 78899999988887644 566777788888877 89999999999998865 445666
Q ss_pred HHHHHhhccC---cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005802 498 AILSAFRHCG---SVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIPTEEDAVILGSFLNV 570 (676)
Q Consensus 498 ~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 570 (676)
.+...|...| ++++|.++|++..+. .+...+..|...|.. .+++++|++++++.....++..+..+...
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~ 408 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEI 408 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6777776656 889999999998764 357788888999988 89999999999998755678888888888
Q ss_pred HHH----hCCHhHHHHHHHHHHcccCC---CCccHHHHHHHHHh
Q 005802 571 CRL----NRNAELAGEAEEKLLRLEGN---NKARYVQLANVYAA 607 (676)
Q Consensus 571 ~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 607 (676)
|.. .+++++|...++++.+..|+ ++.....|+.++..
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 887 89999999999999999844 67777777776554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-17 Score=157.87 Aligned_cols=183 Identities=13% Similarity=0.123 Sum_probs=50.4
Q ss_pred hcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHH
Q 005802 204 REGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHS 283 (676)
Q Consensus 204 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 283 (676)
+.|++++|.+.++++. .| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~~-~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-EP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4556666666666664 33 3677777777777777777777754 2466677777777777777777777666
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHH
Q 005802 284 WVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALF 363 (676)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 363 (676)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 65553 3446667777777777777777765553 255556777777777777777777777766 3677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHH
Q 005802 364 SGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK 412 (676)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 412 (676)
.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|.
T Consensus 156 ~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHH
Confidence 8888888888888888765 25566666666666666666663
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-16 Score=152.14 Aligned_cols=346 Identities=12% Similarity=0.097 Sum_probs=137.5
Q ss_pred hccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 172 KCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMG 251 (676)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 251 (676)
+.|++++|.++++++. ++.+|..+..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.+++..+
T Consensus 15 ~~~~ld~A~~fae~~~---~~~vWs~La~A~l~~g~~~eAIdsfik---a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIK---ADDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4455666666666652 224666666666666777776666654 3455566666666666777777777555555
Q ss_pred hCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHH
Q 005802 252 ENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSM 331 (676)
Q Consensus 252 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 331 (676)
+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..+...|...|.++.|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 42 3445666666667777777766666653 255556777777777777777777777655 366677
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHH
Q 005802 332 IVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPG 411 (676)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 411 (676)
+..+.+.|++++|.+.+.++. ++.+|..++.+|+..|+++.|...... +...+.-...++..|.+.|.++++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHHHH
Confidence 777777777777777777763 666777777777777777777443322 222223344566667777777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHh--cCCHHHHHHHHhhcC---C-----CCcchHHHHHHHHHHcCChhHHHHHH
Q 005802 412 KEIHAYILRMGVQMDKKLISTLVDMYSK--CGNMTYAEIIFQNFI---E-----RDLVLYNVMIACYAHHGHEEKAILLF 481 (676)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~---~-----~~~~~~~~l~~~~~~~~~~~~A~~~~ 481 (676)
..+++...... +-...+|+-|..+|++ .+++.+..+.|..-. + .+...|..+.-.|...++++.|..
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~-- 303 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII-- 303 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH--
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH--
Confidence 77776666544 4455566666666654 445666666665433 1 256789999999999999998876
Q ss_pred HHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 482 EEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 482 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
.|.+. .|+......+.....+..+.+--.+...-.... .|. ..+-|+.++...=+...++.+|++..
T Consensus 304 -tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 304 -TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp -HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred -HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 44443 233333333333333444333222222222222 233 24555555555556666666665543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=152.57 Aligned_cols=270 Identities=10% Similarity=0.016 Sum_probs=177.3
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCc----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcC
Q 005802 332 IVGYSLQGNMEEARRHFDSLTEKNV----VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAA 407 (676)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (676)
++-....|++..|+..++.....++ ...-.+..+|...|+++.|+..++. ..+|+..++..+...+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCc
Confidence 3445667888888888877665432 2344567788888888888875543 245566677777777777788
Q ss_pred hhHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005802 408 LHPGKEIHAYILRMGV-QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 408 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
.+.|...++.+...+. +.+...+..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8888888887777654 33455566666777778888888887777 44566777777777777777778777777776
Q ss_pred CCCCCCHhHH---HHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcH
Q 005802 487 KGIKPDAVTF---VAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDA 561 (676)
Q Consensus 487 ~g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 561 (676)
. .|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++. .+.++
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4 3543211 11223334457777777777777654 23346667777777777777777777777665 44466
Q ss_pred HHHHHHHHHHHHhCCHhH-HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 562 VILGSFLNVCRLNRNAEL-AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
.++..++..+...|+.++ +.++++++.+.+|+++.+. +...+.+.++++..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 666666666666666654 4566677777777665432 34445555555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-15 Score=153.22 Aligned_cols=409 Identities=11% Similarity=0.063 Sum_probs=264.9
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHHhhCCC-CC-CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 005802 191 NLISKNAMVAACCREGEMEMALKTFWRQPE-LN-DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSA 268 (676)
Q Consensus 191 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 268 (676)
+...|..++. +.+.|++++|..+|+++.. .| +...|...+..+.+.|++++|..+|++.... .|+...+...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 4556666665 3556777777777766543 23 4556777777777777777888887777763 3565555544432
Q ss_pred H-hCCCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHHHhcCC-CCc---hhH
Q 005802 269 C-CGLRNVKCAKE----IHSWVLKN-GLIS-NPFVSSGIVDVYCK---------CENMNYAESMLLLKGV-RNS---FSI 328 (676)
Q Consensus 269 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~ 328 (676)
. ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 23455555544 55555543 4433 34556666555443 5677777777776654 211 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH-----HcC---CCCCCH--------
Q 005802 329 SSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFV-----TKE---GVVTDA-------- 392 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~~---~~~p~~-------- 392 (676)
..........|. ..+..++. .+.+++..|..++.+.. ... .++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 111110000000 01111111 02244556666555420 111 134431
Q ss_pred hHHHHHHHHHHhh----cCh----hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 005802 393 LILVILLGACALQ----AAL----HPGKEIHAYILRMGVQMDKKLISTLVDMYSK-------CGNMT-------YAEIIF 450 (676)
Q Consensus 393 ~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~ 450 (676)
..|...+...... ++. ..+..+++.+.... +.++..+..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 2333333222111 122 35667788777753 5677888888888775 68887 899999
Q ss_pred hhcCC---C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHHchhhcC
Q 005802 451 QNFIE---R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA--VTFVAILSAFRHCGSVEMGEKYFNSMTADYK 524 (676)
Q Consensus 451 ~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 524 (676)
++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 98763 3 5668899999999999999999999999984 5653 47888888888899999999999999753
Q ss_pred CCCC-HHHHHHHHHH-HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc----
Q 005802 525 ISPE-TDHYACMIDL-YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA---- 596 (676)
Q Consensus 525 ~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---- 596 (676)
.|+ ...|...+.. +...|+.++|..+|++.. .+.++..|..++..+...|+.++|..+++++++..|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 343 3444333332 346899999999999887 4557889999999999999999999999999998777665
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.|...+......|+.+.+.++.+++.+.-+
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 777778888889999999999999887544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-14 Score=150.49 Aligned_cols=355 Identities=14% Similarity=0.083 Sum_probs=262.8
Q ss_pred CeeeHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhC----CCChHHHHHHHHHHHHhCCCCch
Q 005802 223 DAVSWNTLISGYVQ----NGDAEEGLKLFVRMGENGVRWNEHTFASALSACCG----LRNVKCAKEIHSWVLKNGLISNP 294 (676)
Q Consensus 223 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 294 (676)
+..++..+...|.. .+++++|+..|+...+.| +...+..+-..+.. .++.++|...++...+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444455555554 556666666666655543 23344444444444 555666666665555543 23
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCC-CchhHHHHHHHHHH----c
Q 005802 295 FVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEK-NVVVWTALFSGYVK----A 369 (676)
Q Consensus 295 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~ 369 (676)
..+..|...|.... ...+++++|.+.|++..+. ++..+..+...|.. .
T Consensus 112 ~a~~~Lg~~y~~g~---------------------------g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 112 QAQQNLGVMYHEGN---------------------------GVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp HHHHHHHHHHHHTS---------------------------SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHcCC---------------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 33333333443300 0045566666777766543 45677778888877 7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSK----CG 441 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 441 (676)
++.++|+..|++. ...+ +...+..+...+.. .++.++|...++...+.+ ++..+..+...|.. .+
T Consensus 165 ~d~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 165 RDYVMAREWYSKA-AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 8999999999998 4443 56777777777777 899999999999998865 56677788888876 78
Q ss_pred CHHHHHHHHhhcCC-CCcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhcc-----CcHHH
Q 005802 442 NMTYAEIIFQNFIE-RDLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHC-----GSVEM 511 (676)
Q Consensus 442 ~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~ 511 (676)
++++|...|++..+ .+...+..+...|.. .++.++|+++|++..+.| +...+..+...|... +++++
T Consensus 238 ~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 99999999998764 466677788888888 899999999999998765 455666677777776 89999
Q ss_pred HHHHHHHchhhcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHH
Q 005802 512 GEKYFNSMTADYKISPETDHYACMIDLYGRAN---QLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAE 584 (676)
Q Consensus 512 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 584 (676)
|..++++..+. + +...+..+...|.+.| +.++|++++++.....++..+..+...|.. .+++++|...+
T Consensus 315 A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 315 AISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99999998764 2 4567778888888766 889999999998855788899999999988 89999999999
Q ss_pred HHHHcccCCCCccHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 005802 585 EKLLRLEGNNKARYVQLANVYAA----EGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 585 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 626 (676)
+++.+.. ++..+..|+.+|.. .+++++|...+++..+.++
T Consensus 391 ~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 391 RKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9998763 57889999999998 8999999999999998774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=145.84 Aligned_cols=249 Identities=8% Similarity=0.058 Sum_probs=187.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCCH--hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTDA--LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
+......|++..|+..++.. ....|+. .....+.+++...|+++.|...++. .-+|+...+..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~---~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRV---KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHS---CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhc---ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 34456678888888888764 2334443 3445667788888888888865543 2356677778888888888
Q ss_pred CCHHHHHHHHhhcC----CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 005802 441 GNMTYAEIIFQNFI----ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKY 515 (676)
Q Consensus 441 g~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 515 (676)
|+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88999988888763 24 455666777888889999999988876 35677788888888889999999999
Q ss_pred HHHchhhcCCCCCHHH---HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 516 FNSMTADYKISPETDH---YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 516 ~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
++.+.+. .|+... ...++..+...|++++|..+|+++. .++++..+..+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9888754 355321 1233444555688999999988887 5667888888888889999999999999999988
Q ss_pred cCCCCccHHHHHHHHHhcCChhH-HHHHHHHHHhCCCc
Q 005802 591 EGNNKARYVQLANVYAAEGNWAE-MGRIRKQMRGMKGN 627 (676)
Q Consensus 591 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 627 (676)
+|+++.++..++.++...|++++ +.++++++.+..+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 99998889999988888998876 56788888776654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=159.67 Aligned_cols=277 Identities=10% Similarity=0.015 Sum_probs=206.0
Q ss_pred CHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHH-HHHHHHHcCCCCC--CHhHHHHHHHHHHhhcChhHHHHHHH
Q 005802 340 NMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFD-LLSEFVTKEGVVT--DALILVILLGACALQAALHPGKEIHA 416 (676)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 416 (676)
.++.+...|+.+...+.. ++...|++++|+. .+++.+......| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443322 3344578999998 8876522222222 35667888889999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 005802 417 YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA 493 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 493 (676)
.+.+.. +.+...+..+..+|...|++++|...|+++. +.+..++..+...+...|++++|...++++.... |+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc
Confidence 999875 5677889999999999999999999999875 3467789999999999999999999999999853 432
Q ss_pred h-HHHH---------------HHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 494 V-TFVA---------------ILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 494 ~-~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
. .+.. .+..+...|++++|...++++.......++..++..+...+.+.|++++|++.++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2211 2333448899999999999998653222247889999999999999999999999987
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 557 -TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 557 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.+.++..+..++.++...|++++|+..++++++..|+++..+..++.+|.+.|++++|...++++.+..+
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5557889999999999999999999999999999999999999999999999999999999999987543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=159.42 Aligned_cols=231 Identities=11% Similarity=0.005 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHH
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYA 469 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 469 (676)
..+..+...+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|...|+++. +.+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 335555555666666666666666666554 4456677778888888888888888887765 335668888888999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCH-----------hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDA-----------VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
..|++++|...++++.+. .|+. ..+..+...+...|++++|..+++++.....-.++...+..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999998873 3332 223345778899999999999999998763222258899999999
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 539 YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
|.+.|++++|++.++++. .+.+..+|..++.+|...|++++|+..++++++..|+++..+..++.+|...|++++|..
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999987 566788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 005802 617 IRKQMRGMKG 626 (676)
Q Consensus 617 ~~~~~~~~~~ 626 (676)
.++++.+..+
T Consensus 303 ~~~~al~~~~ 312 (365)
T 4eqf_A 303 NFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhCc
Confidence 9999987544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=157.73 Aligned_cols=259 Identities=12% Similarity=-0.034 Sum_probs=199.0
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005802 356 VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVD 435 (676)
Q Consensus 356 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (676)
...|..+...+.+.|++++|+..|++++... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4456677777777777777777777764332 3456667777777777777777777777777654 445677778888
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-C----------cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHhHHHHHHH
Q 005802 436 MYSKCGNMTYAEIIFQNFIE--R-D----------LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK-PDAVTFVAILS 501 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~ 501 (676)
+|...|++++|...|+++.+ | + ...+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888877652 1 1 223345578889999999999999999985322 15788899999
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
.+...|++++|...++++.+. .|+ ..+|..+..+|.+.|++++|++.++++. .+.+..++..+..+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999764 344 8899999999999999999999999987 4556889999999999999999
Q ss_pred HHHHHHHHHHcccCC------------CCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 579 LAGEAEEKLLRLEGN------------NKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+|...+++++++.|+ +...+..|+.++...|+.+.|.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999776 367799999999999999999887764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-14 Score=151.12 Aligned_cols=214 Identities=9% Similarity=0.052 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh-------hcChh-------HHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005802 373 EALFDLLSEFVTKEGVVTDALILVILLGACAL-------QAALH-------PGKEIHAYILRMGVQMDKKLISTLVDMYS 438 (676)
Q Consensus 373 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (676)
.+++.+|++.+.. .+.+...|......+.. .|+++ +|..+++...+.-.+.+...+..++..+.
T Consensus 255 ~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3677788877443 23345566666666554 67876 78888888876334556888889999999
Q ss_pred hcCCHHHHHHHHhhcC--CC-Cc-chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHH-hhccCcHHHH
Q 005802 439 KCGNMTYAEIIFQNFI--ER-DL-VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSA-FRHCGSVEMG 512 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a 512 (676)
+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|.++|++..+. .|+ ...|...... +...|++++|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999875 33 32 47888888889999999999999999875 333 3333322222 3358999999
Q ss_pred HHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-c----HHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 513 EKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-D----AVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
..+|+...+. .|+ ...|..++..+.+.|+.++|..+|+++. ..| + ...|...+......|+.+.+..+.+
T Consensus 411 ~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 411 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998865 354 8889999999999999999999999987 222 2 3378888888889999999999999
Q ss_pred HHHcccCC
Q 005802 586 KLLRLEGN 593 (676)
Q Consensus 586 ~~~~~~p~ 593 (676)
++.+..|+
T Consensus 488 r~~~~~p~ 495 (530)
T 2ooe_A 488 RRFTAFRE 495 (530)
T ss_dssp HHHHHTHH
T ss_pred HHHHHCch
Confidence 99999885
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=153.02 Aligned_cols=258 Identities=9% Similarity=-0.055 Sum_probs=190.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMY 437 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (676)
.+..+...+...|++++|+..|++++.. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 4445555556666666666666665322 12244455555555666666666666666665543 34555666666677
Q ss_pred HhcCCHHHHHHHHhhcCC--C-CcchHHHH--------------HH-HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 005802 438 SKCGNMTYAEIIFQNFIE--R-DLVLYNVM--------------IA-CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAI 499 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 499 (676)
...|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777776666542 1 22222222 22 3667789999999999998853 3367788889
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCC
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRN 576 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 576 (676)
...+...|++++|...++++... .|+ ...+..+...+...|++++|.+.++++. .+.+...+..+..++...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999754 344 7889999999999999999999999887 45578889999999999999
Q ss_pred HhHHHHHHHHHHcccCC------------CCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 577 AELAGEAEEKLLRLEGN------------NKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 577 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+++|...++++.+..|. ++..+..++.+|...|++++|..++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999998 68899999999999999999999987543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-15 Score=154.15 Aligned_cols=370 Identities=12% Similarity=0.017 Sum_probs=200.9
Q ss_pred CeeeHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhC---C-
Q 005802 223 DAVSWNTLISGYVQNGDAEEGLKLFVRMGEN-----G--VRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNG---L- 290 (676)
Q Consensus 223 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~- 290 (676)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+...+...|++++|...++++.+.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888888889999999999999886541 1 122 34577788888888888888888888775531 0
Q ss_pred --C-CchhHHHHHHHHHHhc--CChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCC-CchhHHHHHH
Q 005802 291 --I-SNPFVSSGIVDVYCKC--ENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEK-NVVVWTALFS 364 (676)
Q Consensus 291 --~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~ 364 (676)
. ....++..+..++... +++++|...|++...- .| ++..+..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----------------------------~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----------------------------KPKNPEFTSGLAI 180 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----------------------------STTCHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----------------------------CCCCHHHHHHHHH
Confidence 1 1223444444344333 3455666555443320 12 2222222222
Q ss_pred H---HHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHH----hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 005802 365 G---YVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACA----LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMY 437 (676)
Q Consensus 365 ~---~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (676)
. +...++.++|++.+++.+... +.+...+..+...+. ..++.++|...++...... +.+...+..+...|
T Consensus 181 ~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~ 257 (472)
T 4g1t_A 181 ASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFY 257 (472)
T ss_dssp HHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHH
Confidence 2 223344455555555442221 112222222222222 2234455555555554443 33444555555555
Q ss_pred HhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHH-------------------cCChhHHHHHHHHHHHCCCCCCHhH
Q 005802 438 SKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAH-------------------HGHEEKAILLFEEMLEKGIKPDAVT 495 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~m~~~g~~p~~~~ 495 (676)
...|++++|...+++.. .| +..++..+..+|.. .+..+.|...+++..+.. +.+..+
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 336 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRV 336 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCC
T ss_pred HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhh
Confidence 55666666655555543 12 23334433333321 234677888888877743 234567
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH--HHHHHHHH-HHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPET--DHYACMID-LYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVC 571 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 571 (676)
+..+...+...|++++|...|++.... ...|.. ..+..+.. .+...|+.++|+..+++.. ..|+.....
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~------ 409 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE------ 409 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH------
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH------
Confidence 788888999999999999999988754 222221 12333333 2357789999999998876 555543332
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEE
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWV 635 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 635 (676)
+....+..++++.++.+|.++.+|..||.+|...|++++|++.+++..+.+...+...+|+
T Consensus 410 ---~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 ---KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2234566778888889999999999999999999999999999999998877665555554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=136.47 Aligned_cols=193 Identities=13% Similarity=0.058 Sum_probs=157.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHH
Q 005802 424 QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAI 499 (676)
Q Consensus 424 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l 499 (676)
|++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888889999999999999988753 35668888999999999999999999999884 45 46678888
Q ss_pred HHHhhcc-----------CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHH
Q 005802 500 LSAFRHC-----------GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILG 565 (676)
Q Consensus 500 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 565 (676)
..++... |++++|...+++..+. .|+ ...+..+..++...|++++|+..++++. . .++..+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8888888 9999999999999854 566 7889999999999999999999999987 5 7888999
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
.+..++...|++++|+..++++++.+|+++..+..++.++...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-16 Score=165.91 Aligned_cols=147 Identities=10% Similarity=0.149 Sum_probs=128.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHhccCC-------CCCcccHHHHHHHHHhcCCChhHHHHHHHHhHhccCCCCCChhhHH
Q 005802 57 FSWNTIISACIKSHDLKQARSLFDSSP-------HKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHIRMDEFTVT 129 (676)
Q Consensus 57 ~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~p~~~~~~ 129 (676)
.+||++|.+||+.|++++|.++|++|. .||++|||+||++||+.|+.+ +|.++|++|.+ .|+.||..||+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~-eA~~Lf~eM~~--~G~~PDvvTYn 204 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK-ELVYVLFMVKD--AGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHH--TTCCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHH-HHHHHHHHHHH--cCCCCcHHHHH
Confidence 489999999999999999999997653 699999999999999999999 99999999999 99999999999
Q ss_pred HHHHHHHccCCc-HHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCC----CchhhHHHHHHHHHh
Q 005802 130 STLNLCVKLLNV-GFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEE----VNLISKNAMVAACCR 204 (676)
Q Consensus 130 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~ 204 (676)
++|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++...++...+..+ +...+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999999888887777777776555442 223445566677776
Q ss_pred cC
Q 005802 205 EG 206 (676)
Q Consensus 205 ~g 206 (676)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 65
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=136.33 Aligned_cols=212 Identities=14% Similarity=0.062 Sum_probs=160.1
Q ss_pred HHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C----C----cchHHHHHHHHH
Q 005802 400 GACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R----D----LVLYNVMIACYA 469 (676)
Q Consensus 400 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~~~~~ 469 (676)
..+...|++++|...+..+.+.. .+...+..+..+|...|++++|...+++..+ | + ...|..+...+.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 33334444444444444444433 3444555555555555666666555555431 1 1 456777888888
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 548 (676)
..|++++|...|++..+. .|+.. .+...|++++|...++.+.. ..|+ ...+..+...+...|++++|
T Consensus 91 ~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999998883 45533 35566889999999998874 3455 77888899999999999999
Q ss_pred HHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 549 IEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 549 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
++.++++. .+.++..+..+..++...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999887 556788899999999999999999999999999999999999999999999999999999999987654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.4e-14 Score=143.79 Aligned_cols=383 Identities=14% Similarity=0.049 Sum_probs=225.0
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC-----------CCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 005802 189 EVNLISKNAMVAACCREGEMEMALKTFWRQPE-----------LNDAVSWNTLISGYVQNGDAEEGLKLFVRMGEN---- 253 (676)
Q Consensus 189 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 253 (676)
+.....|+.+...+...|+.++|++.|++... .....+|+.+..+|...|++++|...+++....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 34456789999999999999999998865321 234567999999999999999999999987642
Q ss_pred -C-CCC-cHhHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhcCChHHHHHHHHhcCC---
Q 005802 254 -G-VRW-NEHTFASALSACC--GLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDV---YCKCENMNYAESMLLLKGV--- 322 (676)
Q Consensus 254 -g-~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~--- 322 (676)
+ ..+ ...++.....++. ..+++++|...|+...+... .++..+..+..+ +...++.+.|.+.+++...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 112 2345555544443 45679999999999998752 344455555444 4456777788877765443
Q ss_pred CCchhHHHHHHHHH----hcCCHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHH
Q 005802 323 RNSFSISSMIVGYS----LQGNMEEARRHFDSLTE---KNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALIL 395 (676)
Q Consensus 323 ~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 395 (676)
.+...+..+...+. ..|+.++|.+.+++... .+..++..+...|...|++++|+..+++.+... +.+...+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHH
Confidence 23444544444433 34567778888876543 345567778888888888888888888864332 2233344
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcC
Q 005802 396 VILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHG 472 (676)
Q Consensus 396 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 472 (676)
..+...+...+.... ... . ..........+.++.|...++... ..+..++..+...+...|
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 444333322111000 000 0 000011111233566777777654 346678999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHh--HHHHHHH-HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAV--TFVAILS-AFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAI 549 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 549 (676)
++++|++.|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+....... ...+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHH
Confidence 9999999999999854333221 2222222 2457799999999999887 445664332222 22334
Q ss_pred HHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH
Q 005802 550 EFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA 602 (676)
Q Consensus 550 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 602 (676)
+++++.. .+.++.+|..++.++...|++++|+..|+++++..|.+|.....+|
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 4444443 4667889999999999999999999999999999998887776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=139.45 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=195.6
Q ss_pred CHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHH
Q 005802 391 DALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIAC 467 (676)
Q Consensus 391 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 467 (676)
+...+......+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 33456677778889999999999999998875 5577888889999999999999999999875 3466788899999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHh-HHHHH--------------HH-HhhccCcHHHHHHHHHHchhhcCCCCCHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAV-TFVAI--------------LS-AFRHCGSVEMGEKYFNSMTADYKISPETDH 531 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 531 (676)
+...|++++|.+.++++.+. .|+.. .+..+ .. .+...|++++|...++++... .+.+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 99999999999999999985 34332 33222 22 378889999999999999764 1235888
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
+..+...+.+.|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|+++..+..++.+|...|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887 55578889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 005802 610 NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 610 ~~~~A~~~~~~~~~~~~ 626 (676)
++++|.+.++++.+..+
T Consensus 255 ~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 99999999999987544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.9e-16 Score=163.76 Aligned_cols=126 Identities=13% Similarity=0.213 Sum_probs=95.7
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhc-------CCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHH
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNF-------IERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFV 497 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 497 (676)
.-..+|++||++||+.|++++|.++|..| ..||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34457777777777777777777777554 25788888888888888888888888888888888888888888
Q ss_pred HHHHHhhccCc-HHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005802 498 AILSAFRHCGS-VEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 498 ~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 88888888876 46788888888777 8888888888887766555444333333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.3e-14 Score=131.94 Aligned_cols=234 Identities=11% Similarity=-0.011 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC--CC----hhHHH
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQ--MD----KKLIS 431 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 431 (676)
.|..+...+...|++++|+..|++.+... ++...+..+...+...|++++|...+..+.+.... ++ ...+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 45666777777788888888887774433 66667777777777788888888777776664311 11 56778
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHH
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVE 510 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 510 (676)
.+...|...|++++|...|++....+.. ...+...|++++|...++++... .| +...+..+...+...|+++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 8888889999999999988877632211 24566778899999999999884 34 3567778888899999999
Q ss_pred HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 511 MGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
+|...++++... .+.+...+..+..++.+.|++++|++.++++. .+.++..+..+..++...|++++|...++++.
T Consensus 157 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999764 12347889999999999999999999999887 55568889999999999999999999999999
Q ss_pred ccc------CCCCccHHHHHH
Q 005802 589 RLE------GNNKARYVQLAN 603 (676)
Q Consensus 589 ~~~------p~~~~~~~~l~~ 603 (676)
+.. |.+...+..+..
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHH
T ss_pred HhChhhcCCCchHHHHHHHHH
Confidence 998 777666665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=131.33 Aligned_cols=241 Identities=8% Similarity=-0.071 Sum_probs=181.9
Q ss_pred cCChHHHHHHHHHHHHcCCCC--CCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 005802 369 AQNCEALFDLLSEFVTKEGVV--TDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYA 446 (676)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 446 (676)
.|++++|+..|++++...... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 466777777777773332111 134556667777777788888888887777764 45677888888899999999999
Q ss_pred HHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhc
Q 005802 447 EIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADY 523 (676)
Q Consensus 447 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 523 (676)
...|++.. +.+...+..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 99988775 336778899999999999999999999999984 466555555555667779999999999887664
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 524 KISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 524 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.+++...+ .++..+...++.++|++.++++. ..| +...+..++.++...|++++|...++++++.+|++.
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 249 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF-- 249 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC--
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH--
Confidence 23333444 47777888889999999998887 222 256788889999999999999999999999998764
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~ 618 (676)
...+.++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 34477888999999998876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=136.95 Aligned_cols=375 Identities=11% Similarity=0.043 Sum_probs=207.0
Q ss_pred HHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCCh---hHHHHHHhhCCCCCCeeeHHHHHHHHHhcC-----C
Q 005802 168 DMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEM---EMALKTFWRQPELNDAVSWNTLISGYVQNG-----D 239 (676)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 239 (676)
..+.+.|++++|.++|++.....+...+..+...+...|+. ++|+..|++.... +...+..+...+...+ +
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcC
Confidence 33344444444444444433322333333344444444555 5666666555523 5556666665444444 5
Q ss_pred hhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 240 AEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNV---KCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 240 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
+++|+..|++..+.|... .+..+...|...+.. ..+.+.+......|. +.....+...|...+.++.+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~-- 161 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL-- 161 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH--
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH--
Confidence 677777777777755422 333344444333322 223334444433332 333444444444444433332
Q ss_pred HHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCCHh
Q 005802 317 LLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQ---NCEALFDLLSEFVTKEGVVTDAL 393 (676)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~ 393 (676)
+++..+++.....++..+..|...|...| +.++|+..|++.
T Consensus 162 -------------------------~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a----------- 205 (452)
T 3e4b_A 162 -------------------------DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG----------- 205 (452)
T ss_dssp -------------------------HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred -------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH-----------
Confidence 33335555555555556666666666666 666666666664
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHhhcCCCCcchHHHHHHH-H
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC----GNMTYAEIIFQNFIERDLVLYNVMIAC-Y 468 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~ 468 (676)
.+.| +++...+..|..+|... +++++|...|+.....+...+..|... +
T Consensus 206 -------------------------a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 206 -------------------------VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLY 259 (452)
T ss_dssp -------------------------HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred -------------------------HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2222 22333233444444333 567777777776662255566666666 3
Q ss_pred --HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC-----cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh
Q 005802 469 --AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG-----SVEMGEKYFNSMTADYKISPETDHYACMIDLYGR 541 (676)
Q Consensus 469 --~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 541 (676)
...+++++|+++|++..+.| +...+..|...|. .| ++++|..+|++.. .-+...+..|...|..
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRR 330 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHC
Confidence 45789999999999988876 5566666666666 45 9999999998875 2356777778877776
Q ss_pred ----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHH--HhcCCh
Q 005802 542 ----ANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVY--AAEGNW 611 (676)
Q Consensus 542 ----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~ 611 (676)
..++++|.++|++.....++.....+...|.. .++.++|...++++.+..+. .....+..+. ...++.
T Consensus 331 G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~ 408 (452)
T 3e4b_A 331 GYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQR 408 (452)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHH
Confidence 34899999999988766667777777777763 45899999999999887554 3334444443 234567
Q ss_pred hHHHHHHHHHHhC
Q 005802 612 AEMGRIRKQMRGM 624 (676)
Q Consensus 612 ~~A~~~~~~~~~~ 624 (676)
++|..+.++.++.
T Consensus 409 ~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 409 AEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7788887776653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-13 Score=126.88 Aligned_cols=198 Identities=10% Similarity=0.032 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 503 (676)
...+..+...+...|++++|...|+++. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455666677777777777777777654 2355677788888888899999999998888753 23567778888888
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHH
Q 005802 504 RHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 504 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 580 (676)
...|++++|..+++++... +..|+ ...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999988752 35564 6778888889999999999999998876 445677888888899999999999
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
...++++.+..|.++..+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999998888899999999999999999999999887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-13 Score=122.95 Aligned_cols=199 Identities=12% Similarity=-0.033 Sum_probs=162.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
+...+..+...+...|++++|...|+++. +.+...|..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44566677777778888888888877664 2356678888888889999999999999888753 3356778888888
Q ss_pred hhcc-CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 503 FRHC-GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 503 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
+... |++++|...++.+.. .+..|+ ...+..+..++...|++++|++.++++. .+.+...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8999 999999999998876 234455 6778888999999999999999998877 4456778888888999999999
Q ss_pred HHHHHHHHHHcccC-CCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 579 LAGEAEEKLLRLEG-NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 579 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+|...++++.+..| .++..+..++.++...|+.++|..+++.+.+..+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 99999999999999 8888888888899999999999999998876544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-13 Score=125.89 Aligned_cols=222 Identities=10% Similarity=0.047 Sum_probs=163.0
Q ss_pred HHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCcc----hHHHHHHHHHHcCCh
Q 005802 401 ACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--RDLV----LYNVMIACYAHHGHE 474 (676)
Q Consensus 401 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~ 474 (676)
.+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...+++... ++.. .|..+...+...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 3444444444444444444432 23444566666677777777777777766543 2222 377888888999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 005802 475 EKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMK 553 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 553 (676)
++|++.|++..+.. +.+...+..+...+...|++++|...+++... ..|+ ...+..+...+...+++++|++.++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988843 23457888888899999999999999998874 3555 7777777734444569999999999
Q ss_pred hCC--CCCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHccc---CCC-----CccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 554 SIP--TEEDAVILGSFLNVCRLNRN---AELAGEAEEKLLRLE---GNN-----KARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 554 ~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
++. .+.+...+..+..++...++ +++|...++++.+.. |+. ...|..++.+|...|++++|.+.+++
T Consensus 167 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 887 44557778888888888888 888999999998884 432 25788899999999999999999999
Q ss_pred HHhCCCc
Q 005802 621 MRGMKGN 627 (676)
Q Consensus 621 ~~~~~~~ 627 (676)
+.+..+.
T Consensus 247 al~~~p~ 253 (272)
T 3u4t_A 247 ILALDPT 253 (272)
T ss_dssp HHHHCTT
T ss_pred HHhcCcc
Confidence 9876554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=129.12 Aligned_cols=175 Identities=15% Similarity=0.109 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhc
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRH 505 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 505 (676)
+..+...|...|++++|...|++.. +.+..+|..+...+...|++++|++.|++..+. .| +...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHH
Confidence 4555556666666666666665543 224456666777777777777777777776654 33 34455555523334
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC---HHHHHHHHHhCC----CCCcH------HHHHHHHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ---LEKAIEFMKSIP----TEEDA------VILGSFLNVC 571 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~~------~~~~~l~~~~ 571 (676)
.+++++|...++++.+. .|+ ...+..+..++...|+ +++|...++++. ..|++ ..+..+...|
T Consensus 155 ~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 45888888888877643 344 6666677777777776 666777666655 12332 4677788889
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
...|++++|...++++++.+|+++.....+..+....+
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999999999988888877765544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-12 Score=122.02 Aligned_cols=191 Identities=14% Similarity=0.058 Sum_probs=140.8
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 005802 428 KLISTLVDMYSK----CGNMTYAEIIFQNFIE-RDLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFVA 498 (676)
Q Consensus 428 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 498 (676)
..+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 115 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHH
Confidence 344445555555 6666666666665542 245566667777777 788888888888887764 5667777
Q ss_pred HHHHhhc----cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 005802 499 ILSAFRH----CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIPTEEDAVILGSFLNV 570 (676)
Q Consensus 499 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 570 (676)
+...|.. .+++++|...+++..+. + +...+..+...|.. .+++++|++.+++.....++..+..+...
T Consensus 116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 191 (273)
T 1ouv_A 116 LGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNM 191 (273)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777 78888888888887654 2 45666777777777 78888888888877644566777778888
Q ss_pred HHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc
Q 005802 571 CRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA----EGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 571 ~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.. .+++++|...++++.+..| +..+..|+.+|.. .|++++|.+.+++..+.++.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 888 8888888888888888755 5678888888888 88899999998888877654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=127.95 Aligned_cols=200 Identities=13% Similarity=0.093 Sum_probs=145.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3445566667777788888888887777643 355677778888888899999999988888753 335677778888
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
.+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++. .+.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 888889999999999888754 12347778888888899999999999988876 45567788888888899999999
Q ss_pred HHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 580 AGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
|+..++++.+..|.++..+..++.+|...|++++|.+.++++.+..+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 999999999888888888999999999999999999999988775543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-12 Score=131.98 Aligned_cols=272 Identities=11% Similarity=0.060 Sum_probs=192.4
Q ss_pred CHHHHHHHHhccCCC-CchhHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHH
Q 005802 340 NMEEARRHFDSLTEK-NVVVWTALFSGYVKAQNCE---ALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIH 415 (676)
Q Consensus 340 ~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 415 (676)
+.++|...|++..++ +...+..|...|...+... ++...+... ...| +......+...+...+.++.+....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a-~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQW-QAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHH-HHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 455555666665543 3446666777776655433 344444443 2222 2334455555666666555554443
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHhhcCCC---CcchHHHHHHHHHHc----CChhHHHHHHHHHH
Q 005802 416 AYILRMGVQMDKKLISTLVDMYSKCG---NMTYAEIIFQNFIER---DLVLYNVMIACYAHH----GHEEKAILLFEEML 485 (676)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~ 485 (676)
....+.-...++..+..|..+|...| +.++|...|++..+. +...+..+...|... +++++|+.+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 33333333445558888999999999 899999999987533 333336677777554 79999999999987
Q ss_pred HCCCCCCHhHHHHHHHH-h--hccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcC-----CHHHHHHHHHhCCC
Q 005802 486 EKGIKPDAVTFVAILSA-F--RHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRAN-----QLEKAIEFMKSIPT 557 (676)
Q Consensus 486 ~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 557 (676)
.| +...+..|... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|+++|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 44555555555 3 5689999999999998754 3 5777778888887 55 9999999999999
Q ss_pred CCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc
Q 005802 558 EEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA----EGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.++.....+...|.. ..++++|...++++.+ +.++.....|+.+|.. ..+.++|...++...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 7788888888887766 4499999999999986 4567889999999985 46899999999999887763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-13 Score=118.23 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=143.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHH
Q 005802 457 DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYAC 534 (676)
Q Consensus 457 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 534 (676)
+...|..+...+...|++++|++.|++.++. .| +...+..+..++...|++++|...++..... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 4557888888899999999999999998874 45 4677888888999999999999999988754 344 777778
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChh
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWA 612 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 612 (676)
+...+...+++++|.+.+.+.. .+.+...+..+..++...|++++|+..++++++.+|.++..+..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888999999999999998877 55677888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 005802 613 EMGRIRKQMRGMKGN 627 (676)
Q Consensus 613 ~A~~~~~~~~~~~~~ 627 (676)
+|.+.+++..+..++
T Consensus 159 ~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 159 EAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCCcc
Confidence 999999999876553
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-13 Score=125.46 Aligned_cols=181 Identities=12% Similarity=0.069 Sum_probs=138.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
+...+..+...+...|++++|...++++. ..+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455555556666666666666666543 2345677778888888899999999999888753 3356778888888
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 580 (676)
+...|++++|...++++... .+.+...+..+...+.+.|++++|.+.++++. .+.+...+..+..++...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 99999999999999998754 12347788899999999999999999998877 455678899999999999999999
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
...++++.+..|+++..+..++.+....|
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999888877766654443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-13 Score=130.32 Aligned_cols=216 Identities=3% Similarity=0.003 Sum_probs=166.0
Q ss_pred hhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHH
Q 005802 404 LQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGN-MTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAIL 479 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 479 (676)
..|++++|...++.+++.. +.+...+..+..++...|+ +++|+..|+++. ..+...|..+..++...|++++|+.
T Consensus 109 ~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444444444433 4455666777777777775 888888877765 2356688888888899999999999
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhh-cCCHHHH-----HHH
Q 005802 480 LFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGR-ANQLEKA-----IEF 551 (676)
Q Consensus 480 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A-----~~~ 551 (676)
.|+++++. .| +...|..+..++...|++++|+..++++.+. .|+ ...|+.+..++.+ .|..++| ++.
T Consensus 188 ~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 188 FIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 99999884 34 5678888888899999999999999999854 555 7888899999988 6665777 477
Q ss_pred HHhCC--CCCcHHHHHHHHHHHHHhC--CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC--------C-hhHHHHHH
Q 005802 552 MKSIP--TEEDAVILGSFLNVCRLNR--NAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG--------N-WAEMGRIR 618 (676)
Q Consensus 552 ~~~~~--~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~ 618 (676)
++++. .+.+...|..+..++...| ++++|+..++++ +..|+++..+..|+.+|.+.| + +++|++++
T Consensus 263 ~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~ 341 (382)
T 2h6f_A 263 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 341 (382)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 77776 4557788988888888887 689999999998 889999999999999999874 3 58999999
Q ss_pred HHH-HhCCC
Q 005802 619 KQM-RGMKG 626 (676)
Q Consensus 619 ~~~-~~~~~ 626 (676)
+++ .+..+
T Consensus 342 ~~l~~~~DP 350 (382)
T 2h6f_A 342 EILAKEKDT 350 (382)
T ss_dssp HHHHHTTCG
T ss_pred HHHHHHhCc
Confidence 998 65443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-12 Score=119.98 Aligned_cols=171 Identities=12% Similarity=0.071 Sum_probs=128.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILS 501 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 501 (676)
+...+..+...|...|++++|.+.++++. ..+...+..+...+...|++++|.+.++++.+.+..|+ ...+..+..
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 44455556666666666666666666543 22455677777888888888888888888877334453 456777778
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
.+...|++++|...++++... .|+ ...+..++..+...|++++|.+.++++. .+.+...+..+...+...|+++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH
Confidence 888889999999999888754 343 7788888899999999999999988876 4456677888888889999999
Q ss_pred HHHHHHHHHHcccCCCCccHH
Q 005802 579 LAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~ 599 (676)
+|...++++.+..|+++....
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999998765543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-12 Score=116.15 Aligned_cols=200 Identities=15% Similarity=0.053 Sum_probs=144.4
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHc-CC
Q 005802 398 LLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHH-GH 473 (676)
Q Consensus 398 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~ 473 (676)
+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...+++.. ..+..++..+...+... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 3333344444444444444444332 2334555666666666777777776666554 23555777788888888 89
Q ss_pred hhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHH
Q 005802 474 EEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 474 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
+++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .|+ ...+..++..+.+.|++++|.+.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999988887433444 566777888889999999999999988754 344 77888899999999999999999
Q ss_pred HHhCC--CC-CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHH
Q 005802 552 MKSIP--TE-EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 552 ~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
++++. .+ .+...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 98876 44 5677777777788899999999999999998999887665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=117.61 Aligned_cols=205 Identities=14% Similarity=0.057 Sum_probs=98.1
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 005802 355 NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLV 434 (676)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 434 (676)
+...+..+...+.+.|++++|+..|++.+. --+.+...+..+...+...|++++|...++.+.+.. |.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344566666666677777777777766522 122334444555555555555555555555555543 23334444444
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHH
Q 005802 435 DMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~ 513 (676)
.++...+. . ... .+...|++++|+..|++..+. .|+ ...+..+..++...|++++|.
T Consensus 81 ~~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 81 EAYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHH
Confidence 44444400 0 000 000005566666666555552 232 444555555555666666666
Q ss_pred HHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 514 KYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
..|++..+. . .+...+..+..+|...|++++|+..++++. .+.++..+..+..++...|++++|+..+++.
T Consensus 139 ~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666665543 2 445555556666666666666666665554 3334555555555666666666666555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-12 Score=126.52 Aligned_cols=244 Identities=7% Similarity=0.048 Sum_probs=191.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcC-hhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAA-LHPGKEIHAYILRMGVQMDKKLISTLVD 435 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (676)
..|+.+...+.+.|++++|+..+++.+... +-+...|..+...+...|+ +++|...++.+.+.. +.+...+..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 456667777777888888888888764332 3345566667777777775 888888888887765 556778888888
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhc-cCcHH
Q 005802 436 MYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRH-CGSVE 510 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~g~~~ 510 (676)
++...|++++|...|+++. ..+...|..+..++...|++++|+..|+++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 8889999999999988876 346778999999999999999999999999985 34 56788888888888 66657
Q ss_pred HH-----HHHHHHchhhcCCCCC-HHHHHHHHHHHhhcC--CHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhC------
Q 005802 511 MG-----EKYFNSMTADYKISPE-TDHYACMIDLYGRAN--QLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNR------ 575 (676)
Q Consensus 511 ~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~------ 575 (676)
+| +..+++.... .|+ ...|..+..++.+.| ++++|++.++++. .+.+...+..++.++...|
T Consensus 253 eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 5778887743 566 788889999999888 6899999988875 3446678888888888764
Q ss_pred ---CHhHHHHHHHHH-HcccCCCCccHHHHHHHHHhc
Q 005802 576 ---NAELAGEAEEKL-LRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 576 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 608 (676)
.+++|+.+++++ .+.+|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999999999888776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-11 Score=116.11 Aligned_cols=226 Identities=11% Similarity=-0.004 Sum_probs=175.8
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCChhHH
Q 005802 355 NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDKKLI 430 (676)
Q Consensus 355 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 430 (676)
++.++..+...+...|++++|+..|++.. . +.+...+..+...+.. .+++++|...++...+.+ ++..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC-D---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-H---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34455666667777777777777777763 3 2344556666666666 777777777777777765 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhcCC-CCcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 005802 431 STLVDMYSK----CGNMTYAEIIFQNFIE-RDLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFVAILS 501 (676)
Q Consensus 431 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 501 (676)
..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777888888 8888888888887653 356678888888888 899999999999999865 5566777777
Q ss_pred Hhhc----cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 005802 502 AFRH----CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL 573 (676)
Q Consensus 502 ~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 573 (676)
.|.. .+++++|...+++..+. .+...+..+...|.. .+++++|++.+++.....++..+..+...+..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 7777 89999999999998754 246778888999999 99999999999988733447778888888888
Q ss_pred ----hCCHhHHHHHHHHHHcccCCC
Q 005802 574 ----NRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 574 ----~~~~~~a~~~~~~~~~~~p~~ 594 (676)
.+++++|...++++.+..|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999988864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=133.27 Aligned_cols=268 Identities=13% Similarity=0.100 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCC--C-C----chhHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCC-HhHH
Q 005802 327 SISSMIVGYSLQGNMEEARRHFDSLTE--K-N----VVVWTALFSGYVKAQNCEALFDLLSEFVTK---EGVVTD-ALIL 395 (676)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~~~ 395 (676)
.+......+...|++++|...|+++.+ | + ...|..+...+...|++++|...+++.+.. .+..|. ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455566667777777777766543 2 2 134556666666777777777777665322 111111 2334
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 005802 396 VILLGACALQAALHPGKEIHAYILRMGVQ-MD----KKLISTLVDMYSKCGN--------------------MTYAEIIF 450 (676)
Q Consensus 396 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 450 (676)
..+...+...|++++|...+..+.+.... ++ ..++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44555555666666666655554432100 01 2244445555555555 55555554
Q ss_pred hhcCC-----C----CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHhhccCcHHHHHHHH
Q 005802 451 QNFIE-----R----DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPD----AVTFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 451 ~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
++... . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 43321 0 112344445555555555555555555443100 011 113444444555555555555555
Q ss_pred HHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCc----HHHHHHHHHHHHHhCCHhHHHHHH
Q 005802 517 NSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP----TEED----AVILGSFLNVCRLNRNAELAGEAE 584 (676)
Q Consensus 517 ~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 584 (676)
++......-.++ ..++..+...|...|++++|.+.++++. ..++ ..++..+..++...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 544321100011 3344445555555555555555554443 0111 223444444555555555555555
Q ss_pred HHHHcccCCC
Q 005802 585 EKLLRLEGNN 594 (676)
Q Consensus 585 ~~~~~~~p~~ 594 (676)
+++.+..+..
T Consensus 331 ~~al~~~~~~ 340 (406)
T 3sf4_A 331 EKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555554444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-13 Score=137.28 Aligned_cols=206 Identities=9% Similarity=0.015 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNM-TYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEM 484 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 484 (676)
+.+...+...... .+.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|.+.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444433332 244667777888888888888 88888888765 235678999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHhhcc---------CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc--------CCHH
Q 005802 485 LEKGIKPDAVTFVAILSAFRHC---------GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA--------NQLE 546 (676)
Q Consensus 485 ~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~ 546 (676)
.+. .|+...+..+...+... |++++|...+++..+. .|+ ...|..+..+|... |+++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 984 57888888899999999 9999999999999854 455 88899999999998 9999
Q ss_pred HHHHHHHhCC--CC---CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 547 KAIEFMKSIP--TE---EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 547 ~A~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+|++.|+++. .+ .++..|..+..++...|++++|...++++.+.+|+++..+..++.++...|++++|.+.+++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999988 34 47889999999999999999999999999999999999999999999999999999975543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.2e-13 Score=133.96 Aligned_cols=263 Identities=14% Similarity=0.045 Sum_probs=172.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCC--HhHHHHHHHHHHhhcChhHHHHHHHHHHHc----C-CCCChhHHHHHH
Q 005802 362 LFSGYVKAQNCEALFDLLSEFVTKEGVVTD--ALILVILLGACALQAALHPGKEIHAYILRM----G-VQMDKKLISTLV 434 (676)
Q Consensus 362 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~ 434 (676)
+...+...|++++|+..|++.+....-.|. ...+..+...+...|+++.|...++.+.+. + .+.....+..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 344445555555555555554332111110 123444444555555555555555444432 1 112234556666
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC---------CcchHHHHHHHHHHcCC-----------------hhHHHHHHHHHHHC-
Q 005802 435 DMYSKCGNMTYAEIIFQNFIER---------DLVLYNVMIACYAHHGH-----------------EEKAILLFEEMLEK- 487 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~~- 487 (676)
..|...|++++|...+++.... ...++..+...|...|+ +++|++.+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777777777777776655311 23366777778888888 88888888776541
Q ss_pred ---CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-
Q 005802 488 ---GIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP-T- 557 (676)
Q Consensus 488 ---g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~- 557 (676)
+-.| ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+.++++. .
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 1111 1346777778888999999999998887643211112 2377888899999999999999988776 1
Q ss_pred --CC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 558 --EE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 558 --~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.. ...++..+..++...|++++|...++++++..+.. ...+..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 24567788889999999999999999998884443 347889999999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-12 Score=127.33 Aligned_cols=263 Identities=19% Similarity=0.124 Sum_probs=172.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCC--HhHHHHHHHHHHhhcChhHHHHHHHHHHHc----CCC-CChhHHHHHHH
Q 005802 363 FSGYVKAQNCEALFDLLSEFVTKEGVVTD--ALILVILLGACALQAALHPGKEIHAYILRM----GVQ-MDKKLISTLVD 435 (676)
Q Consensus 363 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~ 435 (676)
...+...|++++|+..|++++......|. ...+..+...+...|+++.|...+..+.+. +.. ....++..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 34444555555555555554332111110 133444444455555555555555443322 111 12345566677
Q ss_pred HHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCC--------------------hhHHHHHHHHHHH
Q 005802 436 MYSKCGNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGH--------------------EEKAILLFEEMLE 486 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~~ 486 (676)
.|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.+++...
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777766531 11 2366777778888888 8888888877654
Q ss_pred C----CCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 487 K----GIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 487 ~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
. +..|. ...+..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11111 346777778888999999999999887643111111 3477888899999999999999998875
Q ss_pred ---CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 557 ---TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 557 ---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..++ ..++..+...+...|++++|...++++.+..|.. ...+..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1111 4567778889999999999999999998885443 34788999999999999999999999886
Q ss_pred CC
Q 005802 624 MK 625 (676)
Q Consensus 624 ~~ 625 (676)
..
T Consensus 332 ~~ 333 (338)
T 3ro2_A 332 IS 333 (338)
T ss_dssp C-
T ss_pred HH
Confidence 53
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-12 Score=123.67 Aligned_cols=218 Identities=12% Similarity=0.031 Sum_probs=179.2
Q ss_pred hhcChhHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHH
Q 005802 404 LQAALHPGKEIHAYILRMGV---QMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 404 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 477 (676)
..+++++|...++.+.+... +.+...+..+...|...|++++|...|++.. +.+..+|..+...+...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45788999999999887642 2246678889999999999999999999875 34677899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 478 ILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
...|++..+.. +.+...+..+..++...|++++|...++++... .|+..........+...|++++|...+++..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999853 235778888999999999999999999999854 4664444455556677899999999997766
Q ss_pred -CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC----CCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 557 -TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN----NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 557 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|...|++++|...++++.+..+
T Consensus 173 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 173 KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 44444444 4677788888999999999999988664 367899999999999999999999999987654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-12 Score=127.28 Aligned_cols=272 Identities=13% Similarity=0.054 Sum_probs=174.1
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 005802 261 TFASALSACCGLRNVKCAKEIHSWVLKNGLISN---PFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSL 337 (676)
Q Consensus 261 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 337 (676)
.+......+...|+++.|...++.+.+.+.... ..++..+...|...|+++.|...+.+..
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------- 74 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL---------------- 74 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------
Confidence 333444445555555555555555555432110 1334445555555555555554333221
Q ss_pred cCCHHHHHHHHhccCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHHhhcC----
Q 005802 338 QGNMEEARRHFDSLTEK--NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD----ALILVILLGACALQAA---- 407 (676)
Q Consensus 338 ~~~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~---- 407 (676)
.+......+ ...++..+...+...|++++|+..+++.+......++ ..++..+...+...|+
T Consensus 75 --------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 146 (406)
T 3sf4_A 75 --------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146 (406)
T ss_dssp --------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred --------HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccc
Confidence 222222211 1234566666777777777777777665332211122 3356666777777888
Q ss_pred ----------------hhHHHHHHHHHHHc----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----
Q 005802 408 ----------------LHPGKEIHAYILRM----GV-QMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-----RD---- 457 (676)
Q Consensus 408 ----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~---- 457 (676)
++.|...+....+. +. +....++..+...|...|++++|...+++..+ ++
T Consensus 147 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 88888877766543 21 11234677888999999999999999987752 12
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE---- 528 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---- 528 (676)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 306 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 23788889999999999999999999875211 111 456778888999999999999999988643211122
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
..++..+...|.+.|++++|.+.+++..
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999999999998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-09 Score=114.65 Aligned_cols=436 Identities=10% Similarity=-0.009 Sum_probs=258.3
Q ss_pred HHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccc---hHHHHHh
Q 005802 106 DALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRC---YEEACRV 182 (676)
Q Consensus 106 ~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 182 (676)
+.+..|++.+. . .+-|..+|..++..+.+.+.++.+..+++.+... .+.....|...+..-.+.|. ++.+..+
T Consensus 50 d~i~~lE~~l~--~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 50 DVIGKLNDMIE--E-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CHHHHHHHHHH--H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHH--H-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 55556666554 1 2347778888888888888888888888888877 23333456777777777777 8888888
Q ss_pred hhhcCC-C---CchhhHHHHHHHHHhcCCh--------hHHHHHHhh----CCC-CC-CeeeHHHHHHHHH---------
Q 005802 183 FEGCTE-E---VNLISKNAMVAACCREGEM--------EMALKTFWR----QPE-LN-DAVSWNTLISGYV--------- 235 (676)
Q Consensus 183 ~~~~~~-~---~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~----~~~-~~-~~~~~~~li~~~~--------- 235 (676)
|++... - |++..|...+....+.++. +...++|+. ++. .+ +...|...+....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 876655 2 6666777766655554443 222344433 221 12 2334555554332
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 005802 236 QNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAES 315 (676)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 315 (676)
..++.+.+..+|+..+......-..+|..... +.+.-+...+.+++.+.. ..++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELS---------------------AQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHH---------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhh---------------------HHHHHHHH
Confidence 12335556666666664211111112211110 000000001111111100 01111111
Q ss_pred HHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCC--------------C--C------chhHHHHHHHHHHcC---
Q 005802 316 MLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTE--------------K--N------VVVWTALFSGYVKAQ--- 370 (676)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------------~--~------~~~~~~li~~~~~~~--- 370 (676)
.+.... .+.+.+.. | + ...|...+..--..+
T Consensus 264 ~~~e~~------------------------~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l 319 (679)
T 4e6h_A 264 LYQDWL------------------------NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL 319 (679)
T ss_dssp HHHHHH------------------------HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHH------------------------HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccc
Confidence 111100 00000000 0 0 112333333222111
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 005802 371 ----NCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK-EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTY 445 (676)
Q Consensus 371 ----~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (676)
..+.+..+|++.+.. .+-+...|.....-+...|+.+.|. .+++..... +|.+...+...+....+.|+++.
T Consensus 320 ~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 320 SDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHH
Confidence 123456677776443 3335566666666677788888886 899888764 45666777788888888999999
Q ss_pred HHHHHhhcCC-------------CC------------cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 005802 446 AEIIFQNFIE-------------RD------------LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAIL 500 (676)
Q Consensus 446 A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 500 (676)
|.++|+.+.. |+ ...|...+....+.|..+.|..+|.+..+.-..+....|....
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9998887653 21 2368888888888999999999999998851112233343333
Q ss_pred HHhhc-cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHHHHHHHHh
Q 005802 501 SAFRH-CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSFLNVCRLN 574 (676)
Q Consensus 501 ~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~ 574 (676)
..-.+ .++++.|..+|+...+.++ -+...+..+++.....|+.+.|..+|++.. ..| ....|..++..-...
T Consensus 477 ~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 477 YIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 22233 3569999999999987642 346667788898889999999999999987 233 345788888888999
Q ss_pred CCHhHHHHHHHHHHcccCCCCc
Q 005802 575 RNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
|+.+.+..+.+++.+..|+++.
T Consensus 555 G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp CCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999999999998753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-12 Score=109.94 Aligned_cols=166 Identities=14% Similarity=0.039 Sum_probs=141.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSA 502 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 502 (676)
+..+|..+...|.+.|++++|...|++.. +.+..+|..+..++.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56678888888999999999999888775 3366788889999999999999999999988753 2345667777788
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 579 (676)
+...++++.|...+++.... .|+ ...+..+..+|.+.|++++|++.|++.. .+.++.++..++.++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999998753 444 7888899999999999999999999887 55678899999999999999999
Q ss_pred HHHHHHHHHcccCCCC
Q 005802 580 AGEAEEKLLRLEGNNK 595 (676)
Q Consensus 580 a~~~~~~~~~~~p~~~ 595 (676)
|+..++++++.+|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=113.86 Aligned_cols=188 Identities=15% Similarity=0.098 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC---C-CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI---E-RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAIL 500 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 500 (676)
++..+..+...+...|++++|...|++.. + ++...+..+..++...|++++|++.+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 33444455555555555555555555443 1 33344444555555555555555555555542 232 33444444
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC-H-------HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc---HHHHHHHH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE-T-------DHYACMIDLYGRANQLEKAIEFMKSIP-TEED---AVILGSFL 568 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~ 568 (676)
.++...|++++|...+++..+. .|+ . ..|..+...+...|++++|++.++++. ..|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5555555555555555555432 222 2 234444444555555555555555544 2222 23333444
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.++.. .+...++++..+.+.++..|.. ......+.+++|...+++..+..
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 44332 2223334444443333222222 22233444599999999888653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.6e-12 Score=134.48 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=140.4
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHH
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACM 535 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 535 (676)
..+|+.|...+.+.|++++|++.|++.++. .|+ ...+..+..+|.+.|++++|...|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 457788888889999999999999998884 564 677888888999999999999999988743 566 7889999
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
..+|.+.|++++|++.|+++. .+.+...+..+..++...|++++|+..++++++++|+++..+..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998887 455778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005802 614 MGRIRKQMRG 623 (676)
Q Consensus 614 A~~~~~~~~~ 623 (676)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=122.70 Aligned_cols=223 Identities=11% Similarity=0.043 Sum_probs=153.9
Q ss_pred HHHhhcChhHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-----CcchHHHHH
Q 005802 401 ACALQAALHPGKEIHAYILRM----GVQM-DKKLISTLVDMYSKCGNMTYAEIIFQNFIE-----R-----DLVLYNVMI 465 (676)
Q Consensus 401 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~ 465 (676)
.+...|++++|...+....+. +-++ ...++..+...|...|+++.|...+++..+ + ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 345566666666666665543 1111 234566677777777777777776665531 1 123677788
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhc---CCCCC-HHHHHHHH
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIK-PD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADY---KISPE-TDHYACMI 536 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~ 536 (676)
..|...|++++|+..+++..+.... ++ ..++..+...|...|++++|...+++...-. +..|+ ..++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 8888889999999888887752111 11 2367778888889999999999888876410 22144 67788889
Q ss_pred HHHhhcCCHHHHHHHHHhCC------CCC-cHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 537 DLYGRANQLEKAIEFMKSIP------TEE-DAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
..|.+.|++++|.+.+++.. ..| ....+..+...+...|+ +++|+.++++. ...|.....+..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 99999999999999988876 122 12234566667788888 77788777776 334445667888999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|.+.+++..+.
T Consensus 351 ~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988763
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=108.55 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=109.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHh
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYG 540 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 540 (676)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3444555555566666666655554421 223455555666666666666666666666543 1223566666677777
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHH
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIR 618 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 618 (676)
..|++++|.+.++++. .+.+...+..+..++...|++++|...++++.+..|.++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777776665 44566677777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCC
Q 005802 619 KQMRGMKG 626 (676)
Q Consensus 619 ~~~~~~~~ 626 (676)
+++.+..+
T Consensus 168 ~~~~~~~~ 175 (186)
T 3as5_A 168 KKANELDE 175 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 87766443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.6e-11 Score=113.47 Aligned_cols=218 Identities=9% Similarity=0.027 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHH-------hhcCh-------hHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005802 373 EALFDLLSEFVTKEGVVTDALILVILLGACA-------LQAAL-------HPGKEIHAYILRMGVQMDKKLISTLVDMYS 438 (676)
Q Consensus 373 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (676)
++|+..|++.+... +.+...|..+...+. ..|+. ++|..+++...+.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67777777764332 334445555554443 23554 667777766666322344556666666677
Q ss_pred hcCCHHHHHHHHhhcCC--C-Ccc-hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh-hccCcHHHHH
Q 005802 439 KCGNMTYAEIIFQNFIE--R-DLV-LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAF-RHCGSVEMGE 513 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~ 513 (676)
+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777766542 2 232 56666666666777777777777766642 12233333222221 1256777777
Q ss_pred HHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC----CC--cHHHHHHHHHHHHHhCCHhHHHHHHHH
Q 005802 514 KYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPT----EE--DAVILGSFLNVCRLNRNAELAGEAEEK 586 (676)
Q Consensus 514 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 586 (676)
.+|+...+. .|+ ...|..++..+.+.|+.++|..+|+++.. +| ....|..++......|+.+.|..++++
T Consensus 190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777766543 233 56666666666667777777777666652 32 234566666666666777777777777
Q ss_pred HHcccCCCCc
Q 005802 587 LLRLEGNNKA 596 (676)
Q Consensus 587 ~~~~~p~~~~ 596 (676)
+.+..|+++.
T Consensus 267 a~~~~p~~~~ 276 (308)
T 2ond_A 267 RFTAFREEYE 276 (308)
T ss_dssp HHHHTTTTTS
T ss_pred HHHHcccccc
Confidence 7766666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=124.05 Aligned_cols=240 Identities=15% Similarity=0.093 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHH
Q 005802 357 VVWTALFSGYVKAQNCEALFDLLSEFVTKE------GVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLI 430 (676)
Q Consensus 357 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 430 (676)
.++..+...+...|++++|+..+++++... ..+.....+..+...+...|++++|...+..+.+..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 457777788888888888888888763210 111122333444444444445554444444433320
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhc--C--CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHhHHHHH
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNF--I--ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK------GIKP-DAVTFVAI 499 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~--~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l 499 (676)
... . .....++..+...+...|++++|...+++..+. +-.| ....+..+
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 000 0 001234555666666667777777776666542 1122 23456666
Q ss_pred HHHhhccCcHHHHHHHHHHchhhc-----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC----------CC----
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADY-----KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPT----------EE---- 559 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~---- 559 (676)
...+...|++++|..+++++.... +..|. ...+..+..+|...|++++|.+.++++.. .+
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 677777788888877777765421 11233 55677777788888888888877776651 01
Q ss_pred ---cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 560 ---DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 560 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
....+......+...+.+.++...++++....|..+..+..++.+|...|++++|.+.+++..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11122222334445667777777888888778888888999999999999999999999887653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-11 Score=115.75 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TD 530 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 530 (676)
.+..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455555666666666666666666553110 011 225666667777778888887777766432111111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-C---CC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-T---EE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
++..+...+...|++++|.+.++++. . .+ ...++..+..++...|++++|...++++.++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 67777888888888888888887765 1 11 1336677788888999999999999998887554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=124.62 Aligned_cols=235 Identities=16% Similarity=0.072 Sum_probs=149.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc---CCC-CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHc----C-CCCChhH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTK---EGV-VTDALILVILLGACALQAALHPGKEIHAYILRM----G-VQMDKKL 429 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 429 (676)
|..+...+...|++++|+..+++.+.. .+. +.....+..+...+...|++++|...+..+.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444455555555555555444211 011 111233444444455555555555555444332 1 1112335
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCChhHHHHHHHH
Q 005802 430 ISTLVDMYSKCGN-----------------MTYAEIIFQNFIE-------R--DLVLYNVMIACYAHHGHEEKAILLFEE 483 (676)
Q Consensus 430 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 483 (676)
+..+...|...|+ +++|...+++... + ...++..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566667777777 7777666665431 1 233677788888999999999999988
Q ss_pred HHHCCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHh
Q 005802 484 MLEKGIK-PD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKS 554 (676)
Q Consensus 484 m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 554 (676)
..+.... ++ ..++..+...+...|++++|...+++......-..+ ..++..+...+...|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7762110 12 236777888899999999999999887643211111 56788889999999999999999988
Q ss_pred CC-C---CC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 555 IP-T---EE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 555 ~~-~---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
.. . .+ ...++..+..++...|++++|...++++.++.+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 76 1 11 2346777888999999999999999999987553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-09 Score=109.13 Aligned_cols=215 Identities=8% Similarity=0.007 Sum_probs=165.6
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAE-IIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
+..+|+..... ++....+|...+..+.+.|+.++|. .+|+... ..+...|...+....+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44567777765 3567888888888888999999996 9998775 33555678888889999999999999999886
Q ss_pred CCC---------CCC------------HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc-CC
Q 005802 487 KGI---------KPD------------AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA-NQ 544 (676)
Q Consensus 487 ~g~---------~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~ 544 (676)
... .|+ ...|...+....+.|..+.|..+|....+. ...+....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCC
Confidence 310 142 235777777777889999999999999754 1112344454444444444 45
Q ss_pred HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC---CCccHHHHHHHHHhcCChhHHHHHHH
Q 005802 545 LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN---NKARYVQLANVYAAEGNWAEMGRIRK 619 (676)
Q Consensus 545 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 619 (676)
.+.|.++|+... .+.++..|..++......|+.+.|..+|++++...|+ ....|..++..-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999887 5557778888888888999999999999999998773 44567788888888999999999999
Q ss_pred HHHhCCCc
Q 005802 620 QMRGMKGN 627 (676)
Q Consensus 620 ~~~~~~~~ 627 (676)
++.+.-++
T Consensus 566 R~~~~~P~ 573 (679)
T 4e6h_A 566 RFFEKFPE 573 (679)
T ss_dssp HHHHHSTT
T ss_pred HHHHhCCC
Confidence 99886554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-11 Score=121.98 Aligned_cols=179 Identities=9% Similarity=0.008 Sum_probs=158.0
Q ss_pred HHHHHHHHhhcC---CCCcchHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHH
Q 005802 443 MTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHE-EKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFN 517 (676)
Q Consensus 443 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 517 (676)
++++...++... ..+...+..+...+...|++ ++|++.|++..+. .| +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666543 23667888899999999999 9999999999985 45 47789999999999999999999999
Q ss_pred HchhhcCCCCCHHHHHHHHHHHhhc---------CCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh--------CCHh
Q 005802 518 SMTADYKISPETDHYACMIDLYGRA---------NQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN--------RNAE 578 (676)
Q Consensus 518 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------~~~~ 578 (676)
+.. .+.|+...+..+..+|... |++++|++.++++. .+.+...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4568888999999999999 99999999999987 566788999999999998 9999
Q ss_pred HHHHHHHHHHcccC---CCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 579 LAGEAEEKLLRLEG---NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 579 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+|+..++++++.+| .++..+..++.+|...|++++|.+.+++..+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999987544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.7e-10 Score=107.68 Aligned_cols=214 Identities=11% Similarity=0.092 Sum_probs=157.9
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCH-------HHHHHHHhhcCC---C-CcchHHHHHHHHHH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSK-------CGNM-------TYAEIIFQNFIE---R-DLVLYNVMIACYAH 470 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 470 (676)
+.|..+++.+.... +.++..+..++..+.. .|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666777776653 5566777777766653 4775 888888887653 3 44578888888888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-h-HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHh-hcCCHH
Q 005802 471 HGHEEKAILLFEEMLEKGIKPDA-V-TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYG-RANQLE 546 (676)
Q Consensus 471 ~~~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 546 (676)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 8899999999988887 45543 2 6888888888888899999988888743 333 555544444322 368889
Q ss_pred HHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc---cCC-CCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 547 KAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL---EGN-NKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 547 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+|.++|+++. .+.++..|..++..+...|++++|..+|+++++. .|+ +...|..++..+.+.|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988888876 4556778888888888888999999999988885 332 556788888888888999999988888
Q ss_pred HHhCCCcc
Q 005802 621 MRGMKGNR 628 (676)
Q Consensus 621 ~~~~~~~~ 628 (676)
+.+..++.
T Consensus 267 a~~~~p~~ 274 (308)
T 2ond_A 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHcccc
Confidence 88766643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-10 Score=104.57 Aligned_cols=205 Identities=15% Similarity=0.063 Sum_probs=160.9
Q ss_pred CCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CcchHHHHHH
Q 005802 390 TDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-DLVLYNVMIA 466 (676)
Q Consensus 390 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 466 (676)
.|+..+......+...|++++|...+....+...+++...+..+..++...|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999987547777777899999999999999999998763 3 4568888999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-H-------hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC---HHHHHHH
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPD-A-------VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE---TDHYACM 535 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 535 (676)
.+...|++++|++.+++..+. .|+ . ..|..+...+...|++++|...|++.. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999999984 454 3 457777788899999999999999997 44665 5677788
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 536 IDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
..+|...|+. .++++. .+.+...+... .....+.+++|+..++++.++.|+++.+...|..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766653 222222 12233333333 2345677999999999999999999888777766643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=109.14 Aligned_cols=227 Identities=12% Similarity=0.045 Sum_probs=146.4
Q ss_pred HHhcCCHHHHHHHHhccCC-----CC----chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhh
Q 005802 335 YSLQGNMEEARRHFDSLTE-----KN----VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQ 405 (676)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 405 (676)
+...|++++|...|++..+ ++ ..+|..+...|...|+++.|+..+++.+....-.++.
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~------------- 179 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY------------- 179 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT-------------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc-------------
Confidence 3344444444455554432 11 2456777777888888888888887753221111110
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChhH
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGHEEK 476 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~ 476 (676)
.+....++..+...|...|++++|...|++..+ ++ ..++..+...|...|++++
T Consensus 180 -----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 180 -----------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 000122344455555555666666555554431 11 1367778888888888888
Q ss_pred HHHHHHHHHHC----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCC--CCC-HHHHHHHHHHHhhcCC---H
Q 005802 477 AILLFEEMLEK----GIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKI--SPE-TDHYACMIDLYGRANQ---L 545 (676)
Q Consensus 477 A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~ 545 (676)
|+..+++..+. +..| ...++..+...+...|++++|...+++......- .|. ...+..+...+...|+ .
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 88888887761 2223 3566778888899999999999998887543111 122 3345678888888998 8
Q ss_pred HHHHHHHHhCCCCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 546 EKAIEFMKSIPTEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 546 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
++|+.++++....| ....+..+...|...|++++|...++++.+..
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999986433 34466778889999999999999999998773
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-10 Score=99.51 Aligned_cols=168 Identities=10% Similarity=0.046 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFR 504 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 504 (676)
..+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 45666788889999999999999988743 56678888999999999999999999998853 335778888889999
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE 582 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 582 (676)
..|++++|...++++... .+.+...+..+...+...|++++|.+.++++. .+.++..+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999764 23357888899999999999999999999887 55577889999999999999999999
Q ss_pred HHHHHHcccCCCCccH
Q 005802 583 AEEKLLRLEGNNKARY 598 (676)
Q Consensus 583 ~~~~~~~~~p~~~~~~ 598 (676)
.++++.+..|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999988876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-09 Score=104.48 Aligned_cols=258 Identities=9% Similarity=-0.028 Sum_probs=145.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCHh----HHHHHHHHHHhhcChhHHHHHHHHHHHcCC-CCC----hhHHHHHHH
Q 005802 365 GYVKAQNCEALFDLLSEFVTKEGVVTDAL----ILVILLGACALQAALHPGKEIHAYILRMGV-QMD----KKLISTLVD 435 (676)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~ 435 (676)
.+...|++++|...+++.+.... ..+.. .+..+...+...|+++.|...+........ ..+ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445555555555555422221 11111 233333444455555555555554443210 011 122345566
Q ss_pred HHHhcCCHHHHHHHHhhcCC----------C-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--C--CHhHHHHHH
Q 005802 436 MYSKCGNMTYAEIIFQNFIE----------R-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK--P--DAVTFVAIL 500 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll 500 (676)
.+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66677777777766665431 1 1124455666777778888888888777653211 1 123455666
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCc-----HHHHHHHHH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPETDHYA-----CMIDLYGRANQLEKAIEFMKSIP-TEED-----AVILGSFLN 569 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~ 569 (676)
..+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 677778888888888877654311111111111 23344667888888888887776 1111 224456666
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCC------CccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNN------KARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
++...|++++|...++++.+..+.. ...+..++.++...|++++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888888888888877663321 13566677888888888888888877765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-10 Score=106.32 Aligned_cols=203 Identities=11% Similarity=0.020 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---cchHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC-HhHHHH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-D---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGI-KPD-AVTFVA 498 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~ 498 (676)
...+..+...+.+.|++++|...|+.+.+ | + ...+..+..++...|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444445555555555555555555442 1 1 23444455555555555555555555554211 011 223333
Q ss_pred HHHHhhc--------cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHH
Q 005802 499 ILSAFRH--------CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLN 569 (676)
Q Consensus 499 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 569 (676)
+..++.. .|++++|...|+++...+ |+ ......+.......+.. ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4444444 555555555555554331 22 11111111100000000 011356677
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCC---ccHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCcccCceeEEE
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNK---ARYVQLANVYAAE----------GNWAEMGRIRKQMRGMKGNRFAGCSWVY 636 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 636 (676)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~--------- 227 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD--------- 227 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT---------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC---------
Confidence 89999999999999999999999854 4788999999877 8999999999999875442
Q ss_pred EcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 005802 637 VEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYE 670 (676)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (676)
+|...+....+..+...+.+
T Consensus 228 --------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 --------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------CTHHHHHHHHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHHHHHHHH
Confidence 66666777777777666654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-11 Score=116.56 Aligned_cols=241 Identities=14% Similarity=0.120 Sum_probs=144.5
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhccCC--------C---CchhHHHHHHHHHHcCChHHHHHHHHHHHHcC-----C-
Q 005802 325 SFSISSMIVGYSLQGNMEEARRHFDSLTE--------K---NVVVWTALFSGYVKAQNCEALFDLLSEFVTKE-----G- 387 (676)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~- 387 (676)
..++..+...+...|++++|..+|+++.+ . ....+..+...+...|++++|...+++.+... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35678888899999999999999998764 1 23467888999999999999999999874321 1
Q ss_pred CCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc--CC-C-CcchHHH
Q 005802 388 VVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNF--IE-R-DLVLYNV 463 (676)
Q Consensus 388 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~-~-~~~~~~~ 463 (676)
.+....++..+...+...|++++|...+..+.+.. ... .. + ....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHHH
Confidence 11223334444444455555555555544443320 000 00 0 1234566
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC------CCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhc------CCCCC--
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEK------GIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADY------KISPE-- 528 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-- 528 (676)
+...+...|++++|.+.+++..+. +..|+ ..++..+...+...|++++|...++++.... ...|.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 666777777777777777776653 11222 3456667777788888888888887776421 01111
Q ss_pred -----HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 529 -----TDHYACMIDLYGRANQLEKAIEFMKSIP-T-EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 529 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
...+..+...+...+.+.+|...++... . +....++..+..+|...|++++|...+++++++.|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122223333444556666666676666 2 335567888899999999999999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-09 Score=105.13 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcC--CCCC-HHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEK----GIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYK--ISPE-TDH 531 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~-~~~ 531 (676)
+++.+...|...|++++|.+.+++..+. +-.+ ...++..+..+|...|++++|...+++...-.. ..|. ..+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444555555555555555555554431 1011 123455555566666666666666665543100 1222 455
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC----C--CC-cHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCCCCccHHHH
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP----T--EE-DAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
+..+...+.+.|++++|.+.+++.. . .| ....+..+...+...++ +++|+..+++.. ..|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Confidence 5666666666666666666666544 1 11 12233334444555555 555555555521 233334456677
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 005802 602 ANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.+|...|++++|.+.+++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-09 Score=99.21 Aligned_cols=197 Identities=12% Similarity=0.053 Sum_probs=136.8
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 446 AEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 446 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666542 344455667778888889999998888887655322 355667777888888999999999988864
Q ss_pred hcCCCC-----CHHHHHHHHHH--HhhcC--CHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-
Q 005802 522 DYKISP-----ETDHYACMIDL--YGRAN--QLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL- 590 (676)
Q Consensus 522 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 590 (676)
. .| +..+...|+.+ ....| ++.+|..+|+++. ..|+......+++++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 56 24455555544 33334 8888888888877 3444333344445788889999999998877766
Q ss_pred ---------cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHH
Q 005802 591 ---------EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVL 661 (676)
Q Consensus 591 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (676)
+|+++.+...++.+....|+ +|.++++++++..++ ||-+......-
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~-----------------------hp~i~d~~~k~ 296 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE-----------------------HAFIKHHQEID 296 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC-----------------------CHHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC-----------------------ChHHHHHHHHH
Confidence 47788888777777777786 888888888876553 67666666665
Q ss_pred HHHHHHHHh
Q 005802 662 AIFTGELYE 670 (676)
Q Consensus 662 ~~~~~~~~~ 670 (676)
+..++-+.+
T Consensus 297 ~~Fd~~~~k 305 (310)
T 3mv2_B 297 AKFDELVRK 305 (310)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-09 Score=97.83 Aligned_cols=182 Identities=12% Similarity=0.002 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh----HH
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIE--RD----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV----TF 496 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~ 496 (676)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 33445556667777777777777777652 32 135666677777777777777777777763 23321 23
Q ss_pred HHHHHHhhc------------------cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 005802 497 VAILSAFRH------------------CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPT 557 (676)
Q Consensus 497 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 557 (676)
..+..++.. .|++++|...|+++.+. .|+ ...+....... ......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH--------
Confidence 333333332 34555565555555532 233 11111111000 000000
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK---ARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNR 628 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 628 (676)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+++.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113456678899999999999999999999876 568999999999999999999999999877654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-10 Score=119.72 Aligned_cols=163 Identities=10% Similarity=0.157 Sum_probs=139.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 005802 425 MDKKLISTLVDMYSKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAIL 500 (676)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 500 (676)
.+...++.|...|.+.|++++|.+.|++.. .| +..+|..+..+|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345677888888888888888888888765 33 5678889999999999999999999999884 565 67888899
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCH
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNA 577 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 577 (676)
.++...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|++.|+++. .+.+...+..++.++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999998753 566 8889999999999999999999999987 455778899999999999999
Q ss_pred hHHHHHHHHHHcccC
Q 005802 578 ELAGEAEEKLLRLEG 592 (676)
Q Consensus 578 ~~a~~~~~~~~~~~p 592 (676)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999987744
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-08 Score=99.02 Aligned_cols=162 Identities=9% Similarity=0.109 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCH
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGHEEKAILLFEEMLE-----KGIKPDA 493 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~ 493 (676)
.+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+ .. +...
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHH
Confidence 3455566666667777776666655431 11 23566777888888888888888888776 32 2225
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCC--CCC-HHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCC-cHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKI--SPE-TDHYACMIDLYGRANQ---LEKAIEFMKSIPTEE-DAVILGS 566 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~ 566 (676)
.++..+...+.+.|++++|...+++......- .|. ...+..+...+...|+ ..+|+.++++....| ....+..
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 341 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 66777888888899999999888887654222 222 4456667777778888 888888888865333 3345667
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
+...|...|++++|...++++.+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 778889999999999999988765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=103.72 Aligned_cols=222 Identities=13% Similarity=0.082 Sum_probs=150.7
Q ss_pred HhhcChhHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----CcchHHHH
Q 005802 403 ALQAALHPGKEIHAYILRM-------GVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-------R----DLVLYNVM 464 (676)
Q Consensus 403 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 464 (676)
...|+++.|...+++..+. ..+....++..+...|...|++++|...+++... + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777787777766652 2233456778888899999999999988887641 1 24477888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC------CCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhc-----CCCCC-HHH
Q 005802 465 IACYAHHGHEEKAILLFEEMLEK------GIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADY-----KISPE-TDH 531 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 531 (676)
...+...|++++|...+++..+. .-.| ...++..+...+...|++++|..++++..... +..|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999988763 1123 24567778888899999999999998886431 11333 667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-C---------CC-cHHHHHHHHHHHHHhC------CHhHHHHHHHHHHcccCCC
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-T---------EE-DAVILGSFLNVCRLNR------NAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-~---------~~-~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~ 594 (676)
+..+..+|.+.|++++|.++++++. . .+ ....+..+...+...+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888899999999999999888765 1 12 2223333333333322 2333334444333334555
Q ss_pred CccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 595 KARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 595 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+..+..|+.+|...|++++|...+++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678999999999999999999999988753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=98.78 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=94.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQL 545 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 545 (676)
+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. .|+ ...|..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 34456666777666665442 232 334555666777777777777777777643 454 67777777777777777
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH-HHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 546 EKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE-AEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 546 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
++|+..|+++. .+.++..+..+..++...|++++|.. .++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777766 44466777777777888887766554 4578888888888888888777777764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-09 Score=89.25 Aligned_cols=128 Identities=15% Similarity=0.208 Sum_probs=83.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRL 573 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 573 (676)
+..+...+...|++++|..+++.+... . +.+...+..++..+...|++++|.++++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344445555556666666666655432 1 1234555556666666666666666666554 33455566666777777
Q ss_pred hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 574 NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777777777777777788888888888888888887776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-07 Score=93.40 Aligned_cols=230 Identities=7% Similarity=-0.099 Sum_probs=121.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHh----HHHHHHHHHhCCCChHHHHHHHHHHHHhCCC-Cc----hhHHHHHHH
Q 005802 232 SGYVQNGDAEEGLKLFVRMGENGVRWNEH----TFASALSACCGLRNVKCAKEIHSWVLKNGLI-SN----PFVSSGIVD 302 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 302 (676)
..+...|++++|...+++........+.. .+..+...+...|+++.|...++........ .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34556788888888887776643111211 3444455666778888887777776553211 11 122344555
Q ss_pred HHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCC----CchhHHHHHHHHHHcCChHHHHHH
Q 005802 303 VYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEK----NVVVWTALFSGYVKAQNCEALFDL 378 (676)
Q Consensus 303 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~ 378 (676)
.+...|+++.|...+++. .++......+ ....+..+...+...|++++|...
T Consensus 102 ~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 157 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 566666666666444322 1333333222 122455566777888888888888
Q ss_pred HHHHHHcCCC-CC--CHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHHHHHH
Q 005802 379 LSEFVTKEGV-VT--DALILVILLGACALQAALHPGKEIHAYILRMGVQMDK-KLIS-----TLVDMYSKCGNMTYAEII 449 (676)
Q Consensus 379 ~~~m~~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~ 449 (676)
+++.+....- .+ ...++..+...+...|++++|...++........++. ..+. ..+..+...|++++|...
T Consensus 158 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8876432211 11 1234555566666777777777777666543211111 1111 122335566666666666
Q ss_pred HhhcCCCCc-------chHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 450 FQNFIERDL-------VLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 450 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
++....+.. ..+..+...+...|++++|...+++..
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665543221 123344455555555555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=96.13 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=105.5
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR 575 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 575 (676)
|...+...|++++|+..++... ...|+ ...+..+...|.+.|++++|++.|+++. .+.++.+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999999876 34555 5566789999999999999999999988 5668889999999999999
Q ss_pred CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHH-HHHHHhCC
Q 005802 576 NAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRI-RKQMRGMK 625 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 625 (676)
++++|+..++++++++|+++..+..++.+|.+.|++++|.+. +++..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887765 58777643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-09 Score=99.56 Aligned_cols=175 Identities=11% Similarity=0.023 Sum_probs=143.2
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 443 MTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 443 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
.+.....+......+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344455555555455567777888899999999999999999884 45 466788888999999999999999999875
Q ss_pred hcCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC--Cc
Q 005802 522 DYKISPETDHYA-CMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN--KA 596 (676)
Q Consensus 522 ~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 596 (676)
. .|+..... .....+.+.++.++|+..+++.. .+.+...+..+..++...|++++|+..++++++.+|++ +.
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 4 46643333 33344677888888999998877 56678899999999999999999999999999999988 78
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999999988764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.6e-10 Score=105.03 Aligned_cols=201 Identities=10% Similarity=0.025 Sum_probs=142.0
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--CcchHHHHHHHHHHcCChhHH
Q 005802 407 ALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE-------R--DLVLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A 477 (676)
++++|...+..+ ...|...|++++|...|.+... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 4457778888888888776542 1 145788889999999999999
Q ss_pred HHHHHHHHHC----CCCC-CHhHHHHHHHHhhcc-CcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHH
Q 005802 478 ILLFEEMLEK----GIKP-DAVTFVAILSAFRHC-GSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 478 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 547 (676)
+..+++..+. |-.+ -..++..+...|... |++++|...|++...-..-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999887762 1111 134677888889986 9999999999988653211111 3568889999999999999
Q ss_pred HHHHHHhCC-CCCcH--------HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc-----HHHHHHHHH--hcCCh
Q 005802 548 AIEFMKSIP-TEEDA--------VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR-----YVQLANVYA--AEGNW 611 (676)
Q Consensus 548 A~~~~~~~~-~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 611 (676)
|+..++++. ..|+. ..+..++.++...|++++|+..++++++++|..... +..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999876 33321 156777788899999999999999999998886553 344556664 45678
Q ss_pred hHHHHHHHHHH
Q 005802 612 AEMGRIRKQMR 622 (676)
Q Consensus 612 ~~A~~~~~~~~ 622 (676)
++|+..++.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888886554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=91.95 Aligned_cols=103 Identities=8% Similarity=0.002 Sum_probs=94.3
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
.+.|+ ...+..+...+.+.|++++|++.|+++. .+.++..|..+..++...|++++|+..|+++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55676 7788889999999999999999999988 56688899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++.+|...|++++|...+++..+..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=5e-09 Score=98.35 Aligned_cols=203 Identities=14% Similarity=0.069 Sum_probs=145.5
Q ss_pred CCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C---cc
Q 005802 389 VTDALILVILLGACALQAALHPGKEIHAYILRMGVQMD---KKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-D---LV 459 (676)
Q Consensus 389 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~ 459 (676)
+.+...+......+...|++++|...++.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | + ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456667777788899999999999999998865 223 56778889999999999999999998863 3 2 33
Q ss_pred hHHHHHHHHHH--------cCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHH
Q 005802 460 LYNVMIACYAH--------HGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD 530 (676)
Q Consensus 460 ~~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 530 (676)
.+..+..++.. .|++++|+..|++.++. .|+.. .... ...+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence 56777888888 99999999999999984 35432 2211 1111111111 122
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----cHHHHHHHHHHHHHh----------CCHhHHHHHHHHHHcccCCCC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-TEE----DAVILGSFLNVCRLN----------RNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.+..+...|.+.|++++|+..|+++. ..| .+..+..++.++... |++++|+..++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 35567888888999999999888876 223 344666777777755 889999999999999999986
Q ss_pred c---cHHHHHHHHHhcCChhH
Q 005802 596 A---RYVQLANVYAAEGNWAE 613 (676)
Q Consensus 596 ~---~~~~l~~~~~~~g~~~~ 613 (676)
. ....+..++...|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 34455555555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=91.89 Aligned_cols=109 Identities=10% Similarity=-0.014 Sum_probs=92.7
Q ss_pred HHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 515 YFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 515 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
.++++. .+.|+ ...+..+...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..++++++++
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444 44565 6677788889999999999999999877 55688888899999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 592 GNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 592 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
|+++..+..++.+|...|++++|.+.+++..+..+
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999998876544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.9e-09 Score=113.43 Aligned_cols=167 Identities=8% Similarity=-0.038 Sum_probs=98.4
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhc
Q 005802 438 SKCGNMTYAEIIFQNFI-----------ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRH 505 (676)
Q Consensus 438 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 505 (676)
...|++++|.+.+++.. ..+...+..+...+...|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44566666666655543 223445556666666666666666666666653 23 34455555666666
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE 582 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 582 (676)
.|++++|...|++..+. .|+ ...+..+..++.+.|++++ ++.|+++. .+.+...+..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666532 343 5556666666666666666 66666655 33455566666666666666666666
Q ss_pred HHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 583 AEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 583 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
.++++++++|++...+..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-09 Score=92.21 Aligned_cols=159 Identities=7% Similarity=0.042 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDL 538 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 538 (676)
.+..+...+...|++++|...|++..+. .| +...+..+..++...|++++|...++..... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3455566777788888888888776653 34 4566777777888888888888888887644 3333333222222
Q ss_pred -HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC--CccHHHHHHHHHhcCChhH
Q 005802 539 -YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN--KARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 539 -~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 613 (676)
+...+...+|+..+++.. .+.++..+..+..++...|++++|+..++++++.+|+. +..+..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 222233345677777766 45568888999999999999999999999999999875 5589999999999999999
Q ss_pred HHHHHHHHHh
Q 005802 614 MGRIRKQMRG 623 (676)
Q Consensus 614 A~~~~~~~~~ 623 (676)
|...+++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-08 Score=91.41 Aligned_cols=180 Identities=10% Similarity=0.074 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----CcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER-----DLVLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
+...++.....+ +++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555444443 445555567788888899999999999887433 34567778899999999999999999998
Q ss_pred HCCCCC-----CHhHHHHHHHH--hhc--cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 486 EKGIKP-----DAVTFVAILSA--FRH--CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 486 ~~g~~p-----~~~~~~~ll~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
+ ..| +..+...|..+ ... .+++.+|..+|+++..+ .|+..+-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 456 35666666655 333 34899999999999754 4553333444458999999999999998654
Q ss_pred C------------CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 557 T------------EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 557 ~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
. +.++.++..++......|+ .|.++++++.+..|++|.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1 4467777677777777786 88999999999999987543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=86.94 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=78.6
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
-+.|+ ...+......|.+.|++++|++.|+++. .+.++..|..+..++...|++++|+..++++++++|+++..|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 34566 5667777778888888888888887776 45567777778888888888888888888888888888888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
++.+|...|++++|.+.+++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888888888888888888877764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-08 Score=83.34 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLY 539 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 539 (676)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 46667778888888888888888887753 235667777778888888999999888888654 1 23467778888888
Q ss_pred hhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 540 GRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88999999998888876 4456777888888889999999999999999888775
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7e-09 Score=86.76 Aligned_cols=102 Identities=11% Similarity=-0.061 Sum_probs=90.2
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
.+.|+ ...+..+...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..++++++.+|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44565 6667778888999999999999999887 55678889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
++.+|...|++++|.+.+++..+..
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.6e-09 Score=109.32 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=124.6
Q ss_pred cCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHH
Q 005802 440 CGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKY 515 (676)
Q Consensus 440 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 515 (676)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+. .| +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998763 25668888999999999999999999999985 44 467888888999999999999999
Q ss_pred HHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh---CCHhHHHHHHHHHHc
Q 005802 516 FNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN---RNAELAGEAEEKLLR 589 (676)
Q Consensus 516 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 589 (676)
+++..+. .|+ ...+..+..+|.+.|++++|.+.++++. .+.+...+..+..++... |++++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999754 455 7889999999999999999999999987 455778888999999999 999999999999999
Q ss_pred ccCCCCccHHHHH
Q 005802 590 LEGNNKARYVQLA 602 (676)
Q Consensus 590 ~~p~~~~~~~~l~ 602 (676)
.+|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.6e-08 Score=87.58 Aligned_cols=162 Identities=8% Similarity=-0.038 Sum_probs=133.0
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC----cHHHHHHHHHHchhhcCCCCCHHH
Q 005802 456 RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG----SVEMGEKYFNSMTADYKISPETDH 531 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 531 (676)
.++..+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|..+|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 356677777888888899999999999988865 55667777777777 6 899999999998653 25677
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhCCCCCc----HHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 532 YACMIDLYGR----ANQLEKAIEFMKSIPTEED----AVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 532 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
+..|...|.. .+++++|+++|++.....+ +..+..+...|.. .+++++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888887 8899999999999883333 7888888888888 78999999999999988 66778899
Q ss_pred HHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 005802 600 QLANVYAAE-G-----NWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 600 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 626 (676)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=91.23 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=66.4
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---CcchHHH----------------HHHHHHHcCChhHHHHHHHHHHHCCCCC-CH
Q 005802 434 VDMYSKCGNMTYAEIIFQNFIER---DLVLYNV----------------MIACYAHHGHEEKAILLFEEMLEKGIKP-DA 493 (676)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~ 493 (676)
...+...|++++|...|++.... +...|.. +..++.+.|++++|+..|++..+. .| +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCH
Confidence 34445556666666666555421 2223333 444444555555555555554442 22 23
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCcH--HHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ--LEKAIEFMKSIPTEEDA--VILGSFL 568 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~ 568 (676)
..+..+..++...|++++|...|++..+. .|+ ...+..+..+|...|+ .+.+...++... .|++ ..+....
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 34444444455555555555555544422 233 4444444444433322 223333333333 1111 1222233
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
.++...|++++|+..+++++++.|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3344444555555555555554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=96.70 Aligned_cols=174 Identities=11% Similarity=0.052 Sum_probs=138.5
Q ss_pred CHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHhhccCcHHHHHHHH
Q 005802 442 NMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK----GIKPD-AVTFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
++++|...|+.. ...|...|++++|...|++..+. |-.++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888877664 56788899999999999988762 32222 467888999999999999999999
Q ss_pred HHchhhcCCCCC----HHHHHHHHHHHhhc-CCHHHHHHHHHhCC-CCC---c----HHHHHHHHHHHHHhCCHhHHHHH
Q 005802 517 NSMTADYKISPE----TDHYACMIDLYGRA-NQLEKAIEFMKSIP-TEE---D----AVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 517 ~~~~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~~---~----~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
++...-+.-..+ ..++..+..+|... |++++|++.+++.. ..| + ..++..++..+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 988643211111 45788899999996 99999999999887 111 1 34678888999999999999999
Q ss_pred HHHHHcccCCCCc-------cHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 584 EEKLLRLEGNNKA-------RYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 584 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++++.+..|.+.. .+..++.++...|++++|...+++..+..+
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999888754 467889999999999999999999876544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-08 Score=94.25 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----CcchHHHHHHHHHHcCChhHHHHHHHHHHHC------CCC
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIE-------R----DLVLYNVMIACYAHHGHEEKAILLFEEMLEK------GIK 490 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~ 490 (676)
.++..+...|...|++++|...+++... + ...++..+...+...|++++|...+++..+. +-.
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444555555555555555555554421 1 2335666677777777777777777777653 112
Q ss_pred CC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhc------CCCCC-HHHHHHHHHHHhhcC------CHHHHHHHHHhCC
Q 005802 491 PD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADY------KISPE-TDHYACMIDLYGRAN------QLEKAIEFMKSIP 556 (676)
Q Consensus 491 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~ 556 (676)
|+ ..++..+...+...|++++|..++++..... ...+. ...+..+...+...+ .+.++...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 22 3466677777888888888888887775421 11222 333333333333322 3444555555554
Q ss_pred -CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 557 -TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 557 -~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
..| ...++..+..+|...|++++|...++++++.
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 4456778888899999999999999988765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-08 Score=88.32 Aligned_cols=87 Identities=16% Similarity=0.074 Sum_probs=41.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhh
Q 005802 463 VMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGR 541 (676)
Q Consensus 463 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 541 (676)
.+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++.... .|+ ...+..+..+|..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHH
Confidence 3344444555555555555443 2334444555555555555555555555554432 122 4444445555555
Q ss_pred cCCHHHHHHHHHhCC
Q 005802 542 ANQLEKAIEFMKSIP 556 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~ 556 (676)
.|++++|++.++++.
T Consensus 84 ~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 84 TEKYDLAIKDLKEAL 98 (213)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 555555555544443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.1e-09 Score=112.50 Aligned_cols=153 Identities=8% Similarity=-0.038 Sum_probs=136.2
Q ss_pred HHcCChhHHHHHHHHHH--------HCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHH
Q 005802 469 AHHGHEEKAILLFEEML--------EKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDL 538 (676)
Q Consensus 469 ~~~~~~~~A~~~~~~m~--------~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 538 (676)
...|++++|++.+++.. + ..| +...+..+..++...|++++|...++++.+. .|+ ...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHH
Confidence 77899999999999998 4 334 4567888888999999999999999999854 455 7889999999
Q ss_pred HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 539 YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
|...|++++|++.|+++. .+.+...+..+..++...|++++ +..|+++++.+|+++..+..++.+|.+.|++++|.+
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987 55578889999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCc
Q 005802 617 IRKQMRGMKGN 627 (676)
Q Consensus 617 ~~~~~~~~~~~ 627 (676)
.++++.+..+.
T Consensus 556 ~~~~al~l~P~ 566 (681)
T 2pzi_A 556 TLDEVPPTSRH 566 (681)
T ss_dssp HHHTSCTTSTT
T ss_pred HHHhhcccCcc
Confidence 99988776554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=81.74 Aligned_cols=113 Identities=14% Similarity=0.074 Sum_probs=96.5
Q ss_pred CCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHH
Q 005802 489 IKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVIL 564 (676)
Q Consensus 489 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 564 (676)
+.|+ ...+......+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|++.++++. .+.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4454 345667788899999999999999988754 454 8888899999999999999999999887 56678899
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
..++.++...|++++|+..++++++++|+++..+..|+.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999888877765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.6e-08 Score=88.66 Aligned_cols=161 Identities=9% Similarity=0.048 Sum_probs=122.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHH----------------HHHHhhccCcHHHHHHHHHHchhhc
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVA----------------ILSAFRHCGSVEMGEKYFNSMTADY 523 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~ 523 (676)
+......+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 334456677889999999999998874 454 345555 778889999999999999998754
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCC--HhHHHHHHHHHHcccCCCCccH
Q 005802 524 KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRN--AELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 524 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
.|+ ...+..+..++...|++++|+..|+++. .+.++..+..++.++...|+ .+.+...++++....|. ...+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 465 8888999999999999999999999887 55577888888888766553 45566666666543322 2245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
..++.++...|++++|+..+++..+..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 66788888899999999999999877664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-07 Score=88.48 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=122.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCC-CCCHh----HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHH
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGI-KPDAV----TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYAC 534 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 534 (676)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...+++......-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999999887321 22211 2334666677888999999999998763222233 346889
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-----CCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccHH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP-----TEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARYV 599 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 599 (676)
+...|...|++++|++.++++. .+. ...++..++.+|...|++++|+..++++++..+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988876 111 22367888889999999999999999999884433 56789
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 005802 600 QLANVYAAEGN-WAEMGRIRKQMRG 623 (676)
Q Consensus 600 ~l~~~~~~~g~-~~~A~~~~~~~~~ 623 (676)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.6e-08 Score=94.83 Aligned_cols=219 Identities=11% Similarity=0.022 Sum_probs=151.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh-hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 005802 369 AQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL-QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAE 447 (676)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 447 (676)
.|++++|.+++++...... . .+.. .++++.|...+.. ....|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~----------~~~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T----------SFMKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C----------CSSSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c----------cccCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHH
Confidence 4566777777776521111 0 0111 3555555555543 356788889999998
Q ss_pred HHHhhcCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HhHHHHHHHHhhccCcHHHHH
Q 005802 448 IIFQNFIE-----RD----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGI---KPD--AVTFVAILSAFRHCGSVEMGE 513 (676)
Q Consensus 448 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~ 513 (676)
..|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88876642 11 34788888999999999999999998775211 121 3467778888888 9999999
Q ss_pred HHHHHchhhcCCC--C-C-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CCc----HHHHHHHHHHHHHhCCHhHHH
Q 005802 514 KYFNSMTADYKIS--P-E-TDHYACMIDLYGRANQLEKAIEFMKSIP-T---EED----AVILGSFLNVCRLNRNAELAG 581 (676)
Q Consensus 514 ~~~~~~~~~~~~~--p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~a~ 581 (676)
..+++...-+.-. + . ..++..+...|.+.|++++|++.+++.. . .++ ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999886532111 1 1 4678888999999999999999998876 1 111 225556666777889999999
Q ss_pred HHHHHHHcccCCCCccH-----HHHHHHHHhcCChhHHHHH
Q 005802 582 EAEEKLLRLEGNNKARY-----VQLANVYAAEGNWAEMGRI 617 (676)
Q Consensus 582 ~~~~~~~~~~p~~~~~~-----~~l~~~~~~~g~~~~A~~~ 617 (676)
..+++++ ..|...... ..++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 999877653 3444444 56787766663
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-08 Score=85.59 Aligned_cols=121 Identities=14% Similarity=0.184 Sum_probs=84.2
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH-HHHhCCH-
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV-CRLNRNA- 577 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~- 577 (676)
+...|++++|...++..... .| +...+..+...|...|++++|+..++++. .+.++..+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34556777777777776543 23 36677777777777777777777777765 34456666677777 6677777
Q ss_pred -hHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 578 -ELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 578 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++|+..++++++.+|.++..+..++.+|...|++++|...++++.+..+
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 8888888888888888878888888888888888888888887776544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.6e-08 Score=102.64 Aligned_cols=146 Identities=13% Similarity=0.024 Sum_probs=75.7
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHH
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFE 482 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 482 (676)
|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...+...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566666666555443 33455566666666666666666666665542 234456666666666666666666666
Q ss_pred HHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhc---CCHHHHHHHHHhCC
Q 005802 483 EMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRA---NQLEKAIEFMKSIP 556 (676)
Q Consensus 483 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 556 (676)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .|+ ...+..+..++... |+.++|.+.+++..
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 666532 123455556666666666666666666666543 233 55566666666666 66666666666554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-07 Score=89.92 Aligned_cols=164 Identities=10% Similarity=-0.028 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-----hHHHHHHHHhhccCcHHHHHHHHHHchhhcC--CCCC--HH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDA-----VTFVAILSAFRHCGSVEMGEKYFNSMTADYK--ISPE--TD 530 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 530 (676)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445677788899999999999888875322111 1233455567788999999999988764311 1122 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCCc-----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC--C----C
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP----TEED-----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN--N----K 595 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~ 595 (676)
+++.+...|...|++++|++.++++. ..|+ ..++..++.+|...|++++|+..++++++..+. + +
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78899999999999999999998765 1122 257888889999999999999999999987432 1 4
Q ss_pred ccHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 005802 596 ARYVQLANVYAAEGNWAEM-GRIRKQMRG 623 (676)
Q Consensus 596 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 623 (676)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5688999999999999999 777877654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-06 Score=82.40 Aligned_cols=211 Identities=8% Similarity=0.063 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhcC---CCCcchHHHHHHHH----HHc---CChhH
Q 005802 409 HPGKEIHAYILRMGVQMDKKLISTLVDMYSKCG--NMTYAEIIFQNFI---ERDLVLYNVMIACY----AHH---GHEEK 476 (676)
Q Consensus 409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~~ 476 (676)
++|..+...++..+ +-+...++.-...+...| ++++++..++.+. ..+..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34455555554443 333444555555555555 6777777777665 22444555544333 444 67888
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHH--HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC------HHHH
Q 005802 477 AILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVE--MGEKYFNSMTADYKISPETDHYACMIDLYGRANQ------LEKA 548 (676)
Q Consensus 477 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A 548 (676)
++.+++++.+.. +-+...|..-...+.+.|.++ ++++.++.+.+. . .-|...|+.-..++.+.|. ++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888888753 335666666666666677777 888888888764 1 2346677766666666665 7888
Q ss_pred HHHHHhCC--CCCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHccc---CCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 549 IEFMKSIP--TEEDAVILGSFLNVCRLNRN-AELAGEAEEKLLRLE---GNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 549 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
++.++++. .+.|...|......+...|. .+....+++++.+.. |.++..+..|+.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 88887776 56678888888888877776 444666777777765 7777888888888888889999999888887
Q ss_pred h
Q 005802 623 G 623 (676)
Q Consensus 623 ~ 623 (676)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.7e-08 Score=79.20 Aligned_cols=119 Identities=12% Similarity=-0.018 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+.+.|++++|++.|++.. .+.++..|..+..++...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4567777888888999999999998877 55577888889999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 005802 607 AEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGE 667 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (676)
..|++++|...+++..+..++. ...|....+...+.++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~--------------------~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEV--------------------NNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH--------------------HTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCccc--------------------CCchhHHHHHHHHHHHHHh
Confidence 9999999999999887654211 1236666666666666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.7e-08 Score=91.34 Aligned_cols=134 Identities=10% Similarity=-0.046 Sum_probs=114.0
Q ss_pred CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHH
Q 005802 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFL 568 (676)
Q Consensus 491 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 568 (676)
.+...+..+...+...|++++|...|++.... .|+ ...+..+..++.+.|++++|...++++. ..|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34556677778889999999999999999854 565 7889999999999999999999999998 456555443333
Q ss_pred H-HHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 569 N-VCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 569 ~-~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
. .+...++.+.|+..++++.+.+|+++..+..|+.+|...|++++|...++++.+..+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3 4678888999999999999999999999999999999999999999999999887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-07 Score=83.43 Aligned_cols=185 Identities=9% Similarity=-0.011 Sum_probs=131.3
Q ss_pred HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCC-cc---hHHH
Q 005802 392 ALILVILLGACALQAALHPGKEIHAYILRMGVQM--DKKLISTLVDMYSKCGNMTYAEIIFQNFI--ERD-LV---LYNV 463 (676)
Q Consensus 392 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~~~ 463 (676)
...+..+...+...|++++|...++.+.+..... ....+..+..+|.+.|++++|...|+++. .|+ .. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455566677889999999999999999864322 13567788999999999999999999876 333 22 4455
Q ss_pred HHHHHHH------------------cCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHhhccCcHHHHHHHHHHchhhcC
Q 005802 464 MIACYAH------------------HGHEEKAILLFEEMLEKGIKPDAV-TFVAILSAFRHCGSVEMGEKYFNSMTADYK 524 (676)
Q Consensus 464 l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 524 (676)
+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH-----
Confidence 5555554 57899999999999984 46543 2221111 00111111
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cH---HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 525 ISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DA---VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 525 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
......+...|.+.|++++|+..|+++. ..| ++ ..+..+..++...|++++|+..++++....|++...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1122356788899999999999999887 333 32 467788889999999999999999999888886543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=81.76 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=101.5
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
..+..+...+...|++++|...++..... .| +...+..+..++...|++++|++.+++.. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666777788888888888887653 33 47778888888888888888888888776 45567788888889
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV--YAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 623 (676)
+...|++++|...++++.+..|.++..+..+..+ +...|++++|.+.++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999988877554444 8888999999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=78.32 Aligned_cols=115 Identities=12% Similarity=0.022 Sum_probs=83.5
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLN 569 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 569 (676)
...+..+...+...|++++|...+++... ..| +...+..+..++...|++++|++.++++. .+.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 44556666666777777777777776653 233 36666777777777777777777777665 3446677777778
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
++...|++++|...++++.+..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888877664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=82.12 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=105.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHH-H
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNV-C 571 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~-~ 571 (676)
.+..+...+...|++++|...+++..+. .|+ ...+..+..++.+.|++++|+..++++. ..|++..+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 3455667788999999999999998754 465 7889999999999999999999999998 44455443333222 2
Q ss_pred HHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 572 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
...++...|+..++++++.+|+++..+..++.+|...|++++|...++++.+..+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 23334456899999999999999999999999999999999999999999887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-07 Score=77.06 Aligned_cols=118 Identities=9% Similarity=-0.032 Sum_probs=93.5
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++.. .+.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666667777788888888888877653 12246777788888888888888888887776 44567788888888
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChh
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWA 612 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 612 (676)
+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998889999999998888763
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-08 Score=78.17 Aligned_cols=96 Identities=15% Similarity=-0.121 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 608 (676)
.+..+...+.+.|++++|+..++++. .+.+...|..+..++...|++++|+..++++++++|+++..+..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567788889999999999999887 5557888889999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhCCC
Q 005802 609 GNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 609 g~~~~A~~~~~~~~~~~~ 626 (676)
|++++|...+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-07 Score=75.25 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=86.2
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
...+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|..+++++. .+.+...+..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3456666677777778888877777776531 2236677777778888888888888877766 44566777788888
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcC
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEG 609 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 609 (676)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888998888888888888888888888776554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.3e-08 Score=75.81 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC--CCccHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN--NKARYVQLANV 604 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 604 (676)
...+..+...+.+.|++++|...++++. .+.+...+..+..++...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5566677888888888888888888776 4556778888888999999999999999999999999 88999999999
Q ss_pred HHhc-CChhHHHHHHHHHHhCCCc
Q 005802 605 YAAE-GNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 605 ~~~~-g~~~~A~~~~~~~~~~~~~ 627 (676)
|... |++++|.+.++...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999998876553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=9.6e-08 Score=92.91 Aligned_cols=95 Identities=19% Similarity=0.022 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...|..+..+|.+.|++++|+..++++. .+.+...+..+..++...|++++|+..++++++++|+++..+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4678889999999999999999999887 55678889999999999999999999999999999999999999999999
Q ss_pred hcCChhHH-HHHHHHHHh
Q 005802 607 AEGNWAEM-GRIRKQMRG 623 (676)
Q Consensus 607 ~~g~~~~A-~~~~~~~~~ 623 (676)
..|++++| ...++.|..
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 456666643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.3e-07 Score=81.30 Aligned_cols=145 Identities=10% Similarity=-0.012 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcH
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSV 509 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 509 (676)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45567777888889999988888887788888888888888899999998888888753 33566777888888888999
Q ss_pred HHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHH
Q 005802 510 EMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEE-DAVILGSFLNVCRLNRNAELAGEAEEKLL 588 (676)
Q Consensus 510 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 588 (676)
++|...|+.......-.+... +...|. ...| ....+..+..++...|++++|...++++.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999888888875311111000 000000 0111 23445555556666666666666666666
Q ss_pred cccCCC
Q 005802 589 RLEGNN 594 (676)
Q Consensus 589 ~~~p~~ 594 (676)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 666653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-06 Score=78.75 Aligned_cols=172 Identities=15% Similarity=0.038 Sum_probs=130.2
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CcchHHHHHHHHHHcC----ChhHHHHHHHHHH
Q 005802 411 GKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIER-DLVLYNVMIACYAHHG----HEEKAILLFEEML 485 (676)
Q Consensus 411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~ 485 (676)
|...+....+.| ++..+..|...|...+++++|...|++..+. ++..+..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 5666677777777788888888888876543 56677777777776 6 8999999999998
Q ss_pred HCCCCCCHhHHHHHHHHhhc----cCcHHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 005802 486 EKGIKPDAVTFVAILSAFRH----CGSVEMGEKYFNSMTADYKISPE---TDHYACMIDLYGR----ANQLEKAIEFMKS 554 (676)
Q Consensus 486 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 554 (676)
+.| +...+..|...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|+++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 56677777777777 88999999999998743 342 7788888888888 7899999999998
Q ss_pred CC-CCCcHHHHHHHHHHHHHh-C-----CHhHHHHHHHHHHcccC
Q 005802 555 IP-TEEDAVILGSFLNVCRLN-R-----NAELAGEAEEKLLRLEG 592 (676)
Q Consensus 555 ~~-~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p 592 (676)
.. .++++..+..+...|... | +.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 335677777787777643 2 89999999999987643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-08 Score=92.60 Aligned_cols=191 Identities=12% Similarity=0.028 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 005802 426 DKKLISTLVDMYSKCGNMTYAEIIFQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILS 501 (676)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 501 (676)
+...+..+...+.+.|++++|...|++.. .| +...|..+..++...|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455566677777777777777777664 23 5667777888888888888888888887764 34 4567777778
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHH
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPET-DHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 580 (676)
++...|++++|...|++.... .|+. ..+...+....+..+...... ......+++......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 888888888888888877643 2221 111111221111111111111 2222334444444444332 36889999
Q ss_pred HHHHHHHHcccCCCCccHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 005802 581 GEAEEKLLRLEGNNKARYVQLANVYAAE-GNWAEMGRIRKQMRGM 624 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 624 (676)
.+.++++.+..|++......+...+.+. +++++|.++|+.+.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998877777887777776 7789999999888663
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=79.86 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=85.0
Q ss_pred CCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHH
Q 005802 490 KPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILG 565 (676)
Q Consensus 490 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 565 (676)
.|+ ...+..+...+.+.|++++|...|+++... .|+ ...|..+..+|...|++++|++.|+++. .+.++..|.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 443 345666777888899999999999988753 455 7888889999999999999999998887 555778888
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCC
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999988753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.61 E-value=9.6e-05 Score=75.51 Aligned_cols=365 Identities=9% Similarity=-0.061 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHhhCCC-CCCeeeHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCCC-cHhHHHHHHHH
Q 005802 193 ISKNAMVAACCREGEMEMALKTFWRQPE-LNDAVSWNTLISGYVQNGD-AEEGLKLFVRMGEN-GVRW-NEHTFASALSA 268 (676)
Q Consensus 193 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~ 268 (676)
.+|...+..+-. |+++.+..+|++... .|++..|..-+....+.+. .+....+|+..... |..| +...|...+..
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 345555555544 778888888866543 5677777777776665553 34556666666543 4333 33444444444
Q ss_pred HhC----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHH
Q 005802 269 CCG----LRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEA 344 (676)
Q Consensus 269 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (676)
+.. .++.+.+..+|+.++......-...|......- +......+..++.... +.+..|
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~-----------------~~y~~a 156 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL-----------------PIFQSS 156 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh-----------------HHHHHH
Confidence 332 245667777777777632111111222211111 1111112222111100 111122
Q ss_pred HHHHhccCC----CCchhHHHHHHHHHHcC--C-----hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHH
Q 005802 345 RRHFDSLTE----KNVVVWTALFSGYVKAQ--N-----CEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKE 413 (676)
Q Consensus 345 ~~~~~~~~~----~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 413 (676)
..+++.+.. .+...|...+.--...+ - .+.+..+|++++.. .+.+...+...+.-+...|+.+.|..
T Consensus 157 r~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 157 FQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 222221111 12234444443322111 0 34566778876443 24446666666677778888888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHhhcC--C-------C---CcchHHHHHHHHHHcCChhHHHHH
Q 005802 414 IHAYILRMGVQMDKKLISTLVDMYSKCGNMTYA-EIIFQNFI--E-------R---DLVLYNVMIACYAHHGHEEKAILL 480 (676)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~~~~~A~~~ 480 (676)
+++..... |.+...+.. |....+.++. ..+.+... . + ....|...+..+.+.+..+.|..+
T Consensus 235 i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i 308 (493)
T 2uy1_A 235 VVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKL 308 (493)
T ss_dssp HHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888887 444333322 2221111111 11222110 0 0 124577777777778889999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHhh-ccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 005802 481 FEEMLEKGIKPDAVTFVAILSAFR-HCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEE 559 (676)
Q Consensus 481 ~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 559 (676)
|++. .. ..++...|......-. ..++++.|..+|+...+.++- ++..+...++...+.|+.+.|..+|+++. .
T Consensus 309 ~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k 382 (493)
T 2uy1_A 309 FIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--K 382 (493)
T ss_dssp HHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--C
T ss_pred HHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--H
Confidence 9998 32 1223344432222111 234699999999999876432 24556778888889999999999999984 4
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
....|...+..-...|+.+.+..+++++.+.
T Consensus 383 ~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 383 TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5778888888888899999999999988853
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-07 Score=85.76 Aligned_cols=163 Identities=9% Similarity=-0.074 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhhcChhHHHHHHHHHHHcCCC----C-ChhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--Cc
Q 005802 393 LILVILLGACALQAALHPGKEIHAYILRMGVQ----M-DKKLISTLVDMYSKCGNMTYAEIIFQNFIE-------R--DL 458 (676)
Q Consensus 393 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~ 458 (676)
..|......+...|++++|...+....+.... + -..++..+..+|...|++++|...|++... + -.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35666667777788888888887776653211 1 134667777788888888888777765431 1 12
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-C----HhHHHHHHHHhhccCcHHHHHHHHHHchhhc---CCCCC-H
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-D----AVTFVAILSAFRHCGSVEMGEKYFNSMTADY---KISPE-T 529 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~ 529 (676)
.++..+...|.. |++++|+..|++..+..... + ..++..+...+...|++++|...|++..... +..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 356677777777 88888888888776521100 1 3466677778888888888888888776431 11111 2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
..+..++.++...|++++|...+++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 355566677777788888888887765
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=76.46 Aligned_cols=96 Identities=8% Similarity=-0.024 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc-------cHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA-------RYV 599 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~ 599 (676)
...+..+...+.+.|++++|++.|+++. .+.+...|..+..+|...|++++|+..+++++++.|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4456677888888888888888888877 4556778888888889999999999999999888777654 566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 600 QLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 600 ~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.++.+|...|++++|++.+++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7778888889999999998887653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=80.64 Aligned_cols=107 Identities=15% Similarity=-0.007 Sum_probs=84.2
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLN 569 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 569 (676)
...+..+...+...|++++|...|++.... .| +...|..+..+|.+.|++++|+..+++.. .+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456677777888888888888888888754 34 37778888888888888888888888877 4556778888888
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA 602 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 602 (676)
++...|++++|+..+++++++.|+++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888888888888888888888877555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-05 Score=80.49 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 005802 241 EEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLK 320 (676)
Q Consensus 241 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 320 (676)
+.+..+|+++... .+-+...|...+..+...|+++.|..+++..... +.+...+. .|....+.+..
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~------- 261 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV------- 261 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH-------
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH-------
Confidence 3456677777663 2334555666666667778888888888888877 33332222 12221111111
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHH
Q 005802 321 GVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLG 400 (676)
Q Consensus 321 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 400 (676)
+..+...+.. ...+.+.. .........|-..+....+.+..+.|..+|... ...+ .+...|.....
T Consensus 262 -------~~~l~~~~~~-~~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~ 327 (493)
T 2uy1_A 262 -------YGDLKRKYSM-GEAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAF 327 (493)
T ss_dssp -------HHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHH
T ss_pred -------HHHHHHHHHh-hccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHH
Confidence 1111111100 00000000 000001234555666666677788888888875 3222 23333332221
Q ss_pred HHHh-hcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHH
Q 005802 401 ACAL-QAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAIL 479 (676)
Q Consensus 401 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 479 (676)
.-.. .++.+.|..+++...+.- +.++..+...++...+.|+.+.|..+|+.+.+ ....|...+..-...|+.+.+.+
T Consensus 328 lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 328 IEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHH
Confidence 1122 236888888888887753 33445556677777788888888888888743 45667777777777788888888
Q ss_pred HHHHHHH
Q 005802 480 LFEEMLE 486 (676)
Q Consensus 480 ~~~~m~~ 486 (676)
+++++.+
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-07 Score=75.57 Aligned_cols=99 Identities=10% Similarity=-0.058 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
+...+..+...+...|++++|+..|++.. .+.++..+..+..++...|++++|+..++++++.+|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 46777888888888888888888888776 4556778888888888999999999999999999999888999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 005802 606 AAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~~ 626 (676)
...|++++|...+++..+..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999988876543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-07 Score=72.80 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+...|++++|...+++.. .+.++..+..+..++...|++++|...++++.+..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555666666666666666666654 33355566666666666666666666666666666666666666666666
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 677777777666666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.2e-06 Score=79.68 Aligned_cols=158 Identities=12% Similarity=-0.008 Sum_probs=120.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCC---cc------hHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HhHHHH
Q 005802 433 LVDMYSKCGNMTYAEIIFQNFIERD---LV------LYNVMIACYAHHGHEEKAILLFEEMLEKGIK-PD----AVTFVA 498 (676)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~~~~~~---~~------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 498 (676)
.+..+...|++++|...+++..+.. .. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999998865321 11 2334666667778999999999999984322 22 226888
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhc----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------C-CCcHHHHH
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADY----KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-------T-EEDAVILG 565 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~~~~~~~ 565 (676)
+..+|...|++++|..+++++.+.. +..|. ..++..+...|.+.|++++|++.+++.. . ..-..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999987421 11222 4578899999999999999999998776 1 11256788
Q ss_pred HHHHHHHHhC-CHhHHHHHHHHHHcc
Q 005802 566 SFLNVCRLNR-NAELAGEAEEKLLRL 590 (676)
Q Consensus 566 ~l~~~~~~~~-~~~~a~~~~~~~~~~ 590 (676)
.++.++...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8889999999 469999999999876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=8.5e-08 Score=80.56 Aligned_cols=104 Identities=9% Similarity=-0.071 Sum_probs=87.8
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLN 569 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 569 (676)
...+..+...+...|++++|...|+..... .| +...|..+..+|...|++++|++.++++. .+.++..+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 445666777888999999999999988754 45 47888889999999999999999999887 4567788889999
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
++...|++++|+..++++++..|+++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999999998876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.8e-07 Score=81.07 Aligned_cols=184 Identities=9% Similarity=-0.072 Sum_probs=124.5
Q ss_pred hcCCHHHHHHHHhhcCC--C-CcchHHHH-------HHHHHHcCChhHHHHHHHHHHHCCCCCCH---------------
Q 005802 439 KCGNMTYAEIIFQNFIE--R-DLVLYNVM-------IACYAHHGHEEKAILLFEEMLEKGIKPDA--------------- 493 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--------------- 493 (676)
..++...|.+.|.++.. | ....|..+ ...+.+.++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777776652 2 34466665 3455555555555555544433 23321
Q ss_pred -------hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcH----H
Q 005802 494 -------VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDA----V 562 (676)
Q Consensus 494 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 562 (676)
.....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233456677888999999988888642 465336666677888889999999988876633332 3
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHccc--CC-CCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLE--GN-NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...++++....+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 56677778888899999999999887543 44 3456778888889999999999999888876554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=78.40 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=83.7
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhc---CCCCC-HHHHHHHHHHHhhcCCH
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADY---KISPE-TDHYACMIDLYGRANQL 545 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~ 545 (676)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..... +..|. ...+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555666553333322 111223455555555666666666666665554311 11222 44555666666666776
Q ss_pred HHHHHHHHhCC----CCC-c----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC--C----CccHHHHHHHHHhcCC
Q 005802 546 EKAIEFMKSIP----TEE-D----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN--N----KARYVQLANVYAAEGN 610 (676)
Q Consensus 546 ~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 610 (676)
++|.+.+++.. ..+ + ...+..+...+...|++++|...++++.+..+. + ...+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 66666665544 111 1 224555666677777777777777777655221 1 1124677777777888
Q ss_pred hhHHHHHHHHHHh
Q 005802 611 WAEMGRIRKQMRG 623 (676)
Q Consensus 611 ~~~A~~~~~~~~~ 623 (676)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777776654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.1e-07 Score=72.20 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999887 45577888899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 005802 607 AEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~~ 626 (676)
..|++++|...++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999886543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-07 Score=75.79 Aligned_cols=108 Identities=9% Similarity=-0.070 Sum_probs=86.9
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
..+..+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|+..++++. .+.++..+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34555666788889999999999888754 454 7788888889999999999999998877 55577788888899
Q ss_pred HHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 571 CRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
+...|++++|+..++++++..|+++........+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999999999999887765544333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-05 Score=71.66 Aligned_cols=224 Identities=6% Similarity=0.032 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCHh-HHHHHHHHHHhhc--ChhHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---C
Q 005802 372 CEALFDLLSEFVTKEGVVTDAL-ILVILLGACALQA--ALHPGKEIHAYILRMGVQMDKKLISTLVDMY----SKC---G 441 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 441 (676)
.++|+..+..++.. .|+.. .++.--..+...+ +++++..++..+.... +-+..+++.-...+ ... +
T Consensus 49 s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 49 SERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp SHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 34666666655322 23322 2333333444445 6666666666666654 33344444333333 334 6
Q ss_pred CHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChh--HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc------HH
Q 005802 442 NMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEE--KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS------VE 510 (676)
Q Consensus 442 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~ 510 (676)
+++++..+++.+. ..+..+|+--.-.+.+.|+++ ++++.++++++... -|...|+.-...+...|. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence 7888888888776 346667777777777788888 99999999998642 356667666556666666 89
Q ss_pred HHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHH-HHHHHHhCCC-----CCcHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 511 MGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEK-AIEFMKSIPT-----EEDAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
++++.++.+... .|+ ...|+.+..++.+.|+..+ +.++..+... +.++..+..++.++.+.|+.++|.++
T Consensus 204 eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 999999998854 455 8889888888888887544 5567777651 34778889999999999999999999
Q ss_pred HHHHHc-ccCCCCccHHHHHH
Q 005802 584 EEKLLR-LEGNNKARYVQLAN 603 (676)
Q Consensus 584 ~~~~~~-~~p~~~~~~~~l~~ 603 (676)
++.+.+ .+|.....|...+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999997 69988777766554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.7e-07 Score=74.36 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
+...+..+...+.+.|++++|++.+++.. .+.+...+..+..++...|++++|+..++++.+..|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 37788899999999999999999999876 3447788899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 005802 606 AAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~ 625 (676)
...|++++|.+.+++..+..
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999988653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.4e-07 Score=78.51 Aligned_cols=126 Identities=11% Similarity=0.107 Sum_probs=101.4
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHH-HhhcCCH-
Q 005802 469 AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDL-YGRANQL- 545 (676)
Q Consensus 469 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 545 (676)
...|++++|...+++..+.. +.+...+..+...|...|++++|...|++.... .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 45688899999998888753 335678888889999999999999999998754 34 47778888888 7789998
Q ss_pred -HHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 546 -EKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 546 -~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
++|...++++. .+.+...+..+..++...|++++|...++++++..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999887 455678888999999999999999999999999999886544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.5e-07 Score=79.64 Aligned_cols=95 Identities=14% Similarity=-0.041 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
..+..+..+|.+.|++++|+..++++. .+.+...+..+..++...|++++|+..++++++..|.++..+..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 667788888899999999999988877 555778888899999999999999999999999999999999999999999
Q ss_pred cCChhHHH-HHHHHHHhC
Q 005802 608 EGNWAEMG-RIRKQMRGM 624 (676)
Q Consensus 608 ~g~~~~A~-~~~~~~~~~ 624 (676)
.|+.+++. ..++.|...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888777 555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=69.66 Aligned_cols=110 Identities=15% Similarity=0.035 Sum_probs=85.4
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLN 569 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 569 (676)
...+..+...+...|++++|...++..... .| +...+..+...+...|++++|...+++.. .+.++..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566667777788888888888877653 33 46777778888888888888888888776 4456778888888
Q ss_pred HHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 570 VCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
++...|++++|...++++.+..|+++..+..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 899999999999999999999998887777776654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=6e-07 Score=73.00 Aligned_cols=110 Identities=8% Similarity=-0.087 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 005802 494 VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNV 570 (676)
Q Consensus 494 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 570 (676)
..+..+...+...|++++|...|++.... .|+ ...|..+..++.+.|++++|++.+++.. .+.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34556666777888888888888877653 344 7778888888888888888888888776 45567788888888
Q ss_pred HHHhCCHhHHHHHHHHHHccc------CCCCccHHHHHHHHH
Q 005802 571 CRLNRNAELAGEAEEKLLRLE------GNNKARYVQLANVYA 606 (676)
Q Consensus 571 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 606 (676)
+...|++++|+..++++++.+ |.++.....+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 889999999999999999888 777766666665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=72.56 Aligned_cols=110 Identities=12% Similarity=-0.026 Sum_probs=68.3
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
...+..+...+...|++++|...|+.... ..|+ ...+..+..+|...|++++|++.+++.. .+.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555556666666666666666652 3344 4555566666666666666666666654 3335556666
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
+..++...|++++|...++++++..|+++..+..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 666777777777777777777777777666655555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.8e-07 Score=76.11 Aligned_cols=64 Identities=14% Similarity=0.032 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 561 AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 561 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
...+..+..++...|++++|+..++++++++|.++..|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3567777788888889999999999998888988888899999999999999999888887754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-06 Score=75.61 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554 33345555555555555555566666555555555555555555555555
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|...+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 556655555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.9e-07 Score=72.29 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=56.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcH---HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC---CccHHHHHHHHH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDA---VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN---KARYVQLANVYA 606 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 606 (676)
+...+.+.|++++|.+.++++. .+.++ ..+..+..++...|++++|+..++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4455556666666666666554 22222 355556666666677777777777777666666 555666777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 005802 607 AEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|...++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=8.5e-07 Score=72.44 Aligned_cols=99 Identities=12% Similarity=0.057 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY 605 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 605 (676)
+...+..+...+...|++++|.+.++++. .+.+...+..+..++...|++++|+..++++.+..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 36778888999999999999999999887 4557888899999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCC
Q 005802 606 AAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 606 ~~~g~~~~A~~~~~~~~~~~~ 626 (676)
...|++++|...+++..+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999886533
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.1e-07 Score=76.86 Aligned_cols=93 Identities=15% Similarity=0.007 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCC-------------cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-------c
Q 005802 533 ACMIDLYGRANQLEKAIEFMKSIP-TEE-------------DAVILGSFLNVCRLNRNAELAGEAEEKLLRL-------E 591 (676)
Q Consensus 533 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 591 (676)
......+.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344444555555555555555544 112 1237888888888889999999999998888 9
Q ss_pred CCCCccH----HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 592 GNNKARY----VQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 592 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
|+++..| ..++.++...|++++|+..+++..+..
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999 999999999999999999999988753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.6e-07 Score=80.64 Aligned_cols=120 Identities=11% Similarity=-0.000 Sum_probs=90.4
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCcH----------------H
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP-T-EEDA----------------V 562 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~----------------~ 562 (676)
.....|+++++.+.|+.-... .+ ....+..+...+.+.|++++|++.|++.. . +.++ .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344556666666666544322 12 25567777888888899999998888776 2 2232 6
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.+..+..++...|++++|+..++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 78888889999999999999999999999999999999999999999999999999998765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-06 Score=72.99 Aligned_cols=98 Identities=7% Similarity=-0.006 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP-TEED----AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA 602 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 602 (676)
+...+..+...+...|++++|++.+++.. ..|+ ...+..+..++...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 47788899999999999999999999887 4565 678888888999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 005802 603 NVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 603 ~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
.+|...|++++|...+++..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999988653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.7e-07 Score=82.15 Aligned_cols=136 Identities=13% Similarity=-0.062 Sum_probs=104.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDL 538 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 538 (676)
+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 3456677888999999999998887643 65445555556788999999999999866431 1 221 3467788999
Q ss_pred HhhcCCHHHHHHHHHhCCCC---C--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHH
Q 005802 539 YGRANQLEKAIEFMKSIPTE---E--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQL 601 (676)
Q Consensus 539 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 601 (676)
+.+.|++++|+..|++.... | ....+.....++...|+.++|...|+++...+|+ +.....|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 99999999999999988522 3 3346777788899999999999999999999998 6655555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.1e-06 Score=79.09 Aligned_cols=161 Identities=12% Similarity=-0.012 Sum_probs=115.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--C-Cc------chHHHHHHHHHHcCChhHHHHHHHHHHHCCCC---CC--HhH
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFIE--R-DL------VLYNVMIACYAHHGHEEKAILLFEEMLEKGIK---PD--AVT 495 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~---p~--~~~ 495 (676)
+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456667778888888777765431 1 11 12334556667788999999999988763211 11 347
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHch---hhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-------cHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMT---ADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-------DAV 562 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~~ 562 (676)
++.+...|...|++++|..++++.. +..+..+. ..++..+...|.+.|++++|++.+++.. ..+ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7888889999999999999999886 32121222 2578889999999999999999998875 111 256
Q ss_pred HHHHHHHHHHHhCCHhHH-HHHHHHHHcc
Q 005802 563 ILGSFLNVCRLNRNAELA-GEAEEKLLRL 590 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 590 (676)
++..++.++...|++++| ...++++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 778888899999999999 8888888765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=76.21 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=102.0
Q ss_pred hcCCHHHHHH---HHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCC-CHhHHHHHHHHhhccCcHH
Q 005802 439 KCGNMTYAEI---IFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLE----KGIKP-DAVTFVAILSAFRHCGSVE 510 (676)
Q Consensus 439 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~ 510 (676)
..|++++|.+ .+...+.....++..+...+...|++++|...+++..+ .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777776 44443333445677777778888888888888877665 22122 2345667777888888888
Q ss_pred HHHHHHHHchhh---cCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCc----HHHHHHHHHHHHHhCCH
Q 005802 511 MGEKYFNSMTAD---YKISP-E-TDHYACMIDLYGRANQLEKAIEFMKSIP----TEED----AVILGSFLNVCRLNRNA 577 (676)
Q Consensus 511 ~a~~~~~~~~~~---~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~ 577 (676)
+|...+++.... .+-.| . ...+..+...+...|++++|...+++.. ..++ ..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888876543 12122 1 4557778888888899998888887765 1122 22456777788889999
Q ss_pred hHHHHHHHHHHcc
Q 005802 578 ELAGEAEEKLLRL 590 (676)
Q Consensus 578 ~~a~~~~~~~~~~ 590 (676)
++|...++++.++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=72.00 Aligned_cols=100 Identities=10% Similarity=-0.043 Sum_probs=80.4
Q ss_pred CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHH
Q 005802 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSF 567 (676)
Q Consensus 491 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 567 (676)
.+...+..+...+...|++++|...|+..... .|+ ...+..+..++...|++++|+..+++.. .+.++..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34667777777888888888888888887654 344 7778888888888888888888888876 45567788888
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
..++...|++++|+..++++++..|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 88899999999999999999988777
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-06 Score=86.34 Aligned_cols=96 Identities=20% Similarity=0.097 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...|..+..+|.+.|++++|+..++++. .+.+...+..+..+|...|++++|+..|+++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5678889999999999999999999887 55678889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHH-HHHHHHhC
Q 005802 607 AEGNWAEMGR-IRKQMRGM 624 (676)
Q Consensus 607 ~~g~~~~A~~-~~~~~~~~ 624 (676)
..|++++|.+ .++.|...
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998874 56666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-06 Score=73.12 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|+..++++++..|.++..+..++.+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4567778889999999999999999887 45578889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 005802 607 AEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~~ 626 (676)
..|++++|...++++.+..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhccHHHHHHHHHHHHHhCC
Confidence 99999999999999987654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-06 Score=70.86 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-------CccHHH
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-------KARYVQ 600 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 600 (676)
..+..+...+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.+ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 445555666666666666666666654 33455566666666666777777777777776665554 556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 005802 601 LANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 601 l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
++.+|...|++++|.+.++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=87.61 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=66.9
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQL 545 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 545 (676)
+.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|...+++..+. .|+ ...+..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCH
Confidence 44556667777777666663 33 3556666666677777777777777766532 343 56666677777777777
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHH--HHHhCCHhHHHHHHH
Q 005802 546 EKAIEFMKSIP--TEEDAVILGSFLNV--CRLNRNAELAGEAEE 585 (676)
Q Consensus 546 ~~A~~~~~~~~--~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 585 (676)
++|++.++++. .+.+...+..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777776665 23344444444444 666677777777777
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.3e-07 Score=85.96 Aligned_cols=148 Identities=11% Similarity=0.015 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLY 539 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 539 (676)
.+..+...+.+.|++++|+..|++.+.. .|+... +...|+.+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4555666666777777777777776652 344331 223344444332221 13677888999
Q ss_pred hhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH-HhcCChhHHHH
Q 005802 540 GRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVY-AAEGNWAEMGR 616 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~ 616 (676)
.+.|++++|+..++++. .+.+...+..+..++...|++++|+..++++++++|+++..+..|..+. ...+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887 4557788889999999999999999999999999999999998888884 44567788888
Q ss_pred HHHHHHhCCCc
Q 005802 617 IRKQMRGMKGN 627 (676)
Q Consensus 617 ~~~~~~~~~~~ 627 (676)
.++.|.+..+.
T Consensus 321 ~~~~~l~~~p~ 331 (338)
T 2if4_A 321 MYKGIFKGKDE 331 (338)
T ss_dssp -----------
T ss_pred HHHHhhCCCCC
Confidence 88888765543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.3e-07 Score=90.70 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=101.4
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR 575 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 575 (676)
+...+.+.|++++|.+.+++..+. .|+ ...|..+..+|.+.|++++|++.++++. .+.+...+..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344567889999999999999854 455 8899999999999999999999999987 4557788999999999999
Q ss_pred CHhHHHHHHHHHHcccCCCCccHHHHHHH--HHhcCChhHHHHHHH
Q 005802 576 NAELAGEAEEKLLRLEGNNKARYVQLANV--YAAEGNWAEMGRIRK 619 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 619 (676)
++++|+..++++++..|+++..+..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999988 889999999999988
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-07 Score=72.76 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHhCC-C---CC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHH
Q 005802 542 ANQLEKAIEFMKSIP-T---EE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
.|++++|+..|++.. . .| +...+..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 344455555554444 1 12 233444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 005802 617 IRKQMRG 623 (676)
Q Consensus 617 ~~~~~~~ 623 (676)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.4e-06 Score=68.61 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=72.6
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR 572 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 572 (676)
+..+...+.+.|++++|...+++..+. .|+ ...|..+..++...|++++|+..++++. .+.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445556677888888888888888754 454 7778888888888888888888888877 4456778888888888
Q ss_pred HhCCHhHHHHHHHHHHcccCCCC
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~ 595 (676)
..|++++|+..++++++.+|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999998888754
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=7e-05 Score=71.30 Aligned_cols=191 Identities=6% Similarity=0.019 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHhhcCC---CCcchHHHHHHHHHHc-C-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 005802 430 ISTLVDMYSKCG-NMTYAEIIFQNFIE---RDLVLYNVMIACYAHH-G-HEEKAILLFEEMLEKGIKPDAVTFVAILSAF 503 (676)
Q Consensus 430 ~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 503 (676)
++.--..+...| .+++++..++.+.. .+..+|+.-...+.+. + ++++++++++++.+.. +-|...|+.-...+
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl 169 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 333333333344 35555555555442 2333444444444443 4 5566666666666532 12344444333333
Q ss_pred hccCcHH--------HHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC-------HHHHHHHHHhCC--CCCcHHHHHH
Q 005802 504 RHCGSVE--------MGEKYFNSMTADYKISPETDHYACMIDLYGRANQ-------LEKAIEFMKSIP--TEEDAVILGS 566 (676)
Q Consensus 504 ~~~g~~~--------~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~--~~~~~~~~~~ 566 (676)
.+.|.++ ++++.++++.+. . .-|...|+....++.+.++ ++++++.++++. .+.|...|..
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Y 247 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNY 247 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3333333 666666666643 1 2235666666666666554 566777766665 4556666666
Q ss_pred HHHHHHHhCCH--------------------hHHHHHHHHHHccc------CCCCccHHHHHHHHHhcCChhHHHHHHHH
Q 005802 567 FLNVCRLNRNA--------------------ELAGEAEEKLLRLE------GNNKARYVQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 567 l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
+-..+...|.. .........+.... +.++.....|+++|...|+.++|.++++.
T Consensus 248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~ 327 (349)
T 3q7a_A 248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK 327 (349)
T ss_dssp HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66666555443 22223322222222 45566778899999999999999999998
Q ss_pred HHh
Q 005802 621 MRG 623 (676)
Q Consensus 621 ~~~ 623 (676)
+.+
T Consensus 328 l~~ 330 (349)
T 3q7a_A 328 LSS 330 (349)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=4.6e-06 Score=78.67 Aligned_cols=113 Identities=8% Similarity=-0.073 Sum_probs=92.6
Q ss_pred CHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHH
Q 005802 492 DAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFL 568 (676)
Q Consensus 492 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 568 (676)
+...+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|++.++++. .+.+...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4566777888889999999999999998754 45 47888899999999999999999999877 445677888888
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.++...|++++|+..++++.+..|+++..+..+++...+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 118 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 899999999999999999999988876666555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=80.64 Aligned_cols=163 Identities=8% Similarity=-0.128 Sum_probs=104.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCH----hHHHHHHHHhhccCcHHHHHHHHHHchhh---cCCCCC-HHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEK-GIKPDA----VTFVAILSAFRHCGSVEMGEKYFNSMTAD---YKISPE-TDH 531 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 531 (676)
+..+...|...|++++|.+.+.++... +..++. ...+.+-..+...|+++.|..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777777788888888777776541 111111 12233334455667888888777765431 122333 566
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC---CC----Cc
Q 005802 532 YACMIDLYGRANQLEKAIEFMKSIP-------TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG---NN----KA 596 (676)
Q Consensus 532 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~----~~ 596 (676)
+..++..|...|++++|..++++.. ..+ ...++..++..|...|++++|..+++++....+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7778888888888888888877654 112 234666777788888888888888888876632 21 23
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 597 RYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 597 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456667777788888888877766644
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-06 Score=83.15 Aligned_cols=89 Identities=9% Similarity=-0.075 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...|..+..+|.+.|++++|++.++++. .+.+...+..+..++...|++++|+..+++++++.|+++..+..++.++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 6788889999999999999999999887 34467788899999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHH
Q 005802 607 AEGNWAEMGRI 617 (676)
Q Consensus 607 ~~g~~~~A~~~ 617 (676)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99988887654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=8e-06 Score=79.27 Aligned_cols=128 Identities=7% Similarity=-0.009 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHhhccCcHHHHHHHHHHchh
Q 005802 458 LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD----------------AVTFVAILSAFRHCGSVEMGEKYFNSMTA 521 (676)
Q Consensus 458 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 521 (676)
...|..+...+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|...+++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666777777788888888888887774 333 36788888888899999999999998875
Q ss_pred hcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHH-HHHHHHHHcc
Q 005802 522 DYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELA-GEAEEKLLRL 590 (676)
Q Consensus 522 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 590 (676)
. .|+ ...|..+..+|...|++++|+..|+++. .+.+...+..+..++...|++++| ...++++...
T Consensus 225 ~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 225 L---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 454 7888888999999999999999998887 455677888888888888888888 4566666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-06 Score=69.68 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=68.9
Q ss_pred cCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH
Q 005802 506 CGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE 582 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 582 (676)
.|++++|...|++..+...-.|+ ...+..+..+|.+.|++++|++.++++. .+.++..+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777888888877642000244 6677788888888888888888888877 45567788888888899999999999
Q ss_pred HHHHHHcccCCCCccHH
Q 005802 583 AEEKLLRLEGNNKARYV 599 (676)
Q Consensus 583 ~~~~~~~~~p~~~~~~~ 599 (676)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999988888765543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.2e-06 Score=64.58 Aligned_cols=101 Identities=10% Similarity=0.004 Sum_probs=71.8
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC--cHHHHHHHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEE--DAVILGSFL 568 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~ 568 (676)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++.. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 344555666677777777777777777643 12236667777777778888888888777766 333 466777777
Q ss_pred HHHHHh-CCHhHHHHHHHHHHcccCCCC
Q 005802 569 NVCRLN-RNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 569 ~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 595 (676)
.++... |++++|.+.++++.+..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 788888 888888888888888877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.4e-06 Score=68.44 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=59.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----c----HHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE----D----AVIL 564 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~----~~~~ 564 (676)
.+..+...+.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|++.+++.. ..| + ..++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3445555666666666666666666532 344 5556666666666666666666666554 111 1 1245
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
..++.++...|++++|+..++++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 56666777788888888888888776664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-05 Score=64.26 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=70.2
Q ss_pred HHHHHhhccCcHHHHHHHHHHchhhcCCCCC-H---HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCc---HHHHHHHH
Q 005802 498 AILSAFRHCGSVEMGEKYFNSMTADYKISPE-T---DHYACMIDLYGRANQLEKAIEFMKSIP--TEED---AVILGSFL 568 (676)
Q Consensus 498 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~ 568 (676)
.+...+...|++++|...|+.+... .|+ . ..+..+..++.+.|++++|+..++++. .+.+ +..+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445566677777777777777654 233 2 466667777777777777777777765 2333 55677777
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHH
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLA 602 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 602 (676)
.++...|++++|...++++++..|+++.......
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 7888888888888888888888887765544443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-06 Score=73.03 Aligned_cols=78 Identities=19% Similarity=0.058 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCC-ccHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNK-ARYVQLANVY 605 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 605 (676)
...|..+..+|.+.|++++|+..++++. .+.+...+..++.++...|++++|...++++++++|+++ .+...|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5678888999999999999999998887 556788899999999999999999999999999999987 5555555444
Q ss_pred H
Q 005802 606 A 606 (676)
Q Consensus 606 ~ 606 (676)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.6e-07 Score=71.17 Aligned_cols=94 Identities=9% Similarity=-0.094 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC------CccH
Q 005802 527 PETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------KARY 598 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 598 (676)
++...+..+...+.+.|++++|++.+++.. .+.++..+..+..++...|++++|+..++++++..|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 345677788889999999999999998877 55578888899999999999999999999999999998 7778
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQ 620 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~ 620 (676)
..++.++...|++++|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 8888888888888877666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.5e-06 Score=68.04 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=71.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C----CCc----HHHHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-T----EED----AVILG 565 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~ 565 (676)
.+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...++++. . .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455555666666666666666666543 12235566666667777777777777766655 1 112 55677
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+..++...|++++|...++++.+..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777788888888888888888888777 46666666555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-06 Score=72.65 Aligned_cols=129 Identities=18% Similarity=0.076 Sum_probs=84.6
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC----cHH
Q 005802 495 TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP----TEE----DAV 562 (676)
Q Consensus 495 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~ 562 (676)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555566666666666666655432110111 2356667777777777777777776654 111 133
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCC------CCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGN------NKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.+..+..++...|++++|...++++++..+. .+..+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777788888888888888888776322 134678889999999999999999988765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00024 Score=67.36 Aligned_cols=178 Identities=10% Similarity=-0.017 Sum_probs=112.2
Q ss_pred HHHHHHHHhhcC---CCCcchHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc-HHHHHHHH
Q 005802 443 MTYAEIIFQNFI---ERDLVLYNVMIACYAHHG--HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS-VEMGEKYF 516 (676)
Q Consensus 443 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 516 (676)
++++..+++.+. ..+..+|+--.-.+...+ .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344555555443 234556665555555656 3677788888777743 2255556555555556666 57777777
Q ss_pred HHchhhcCCCCC-HHHHHHHHHHHhhc--------------CCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh-----
Q 005802 517 NSMTADYKISPE-TDHYACMIDLYGRA--------------NQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN----- 574 (676)
Q Consensus 517 ~~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 574 (676)
+.+.+. .|+ ...|+....++.+. +.++++++.+.+.. .+.|...|..+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 777754 233 66666555555444 44677888887776 555777777665555444
Q ss_pred ------CCHhHHHHHHHHHHcccCCCCccHHHHHHHH---HhcCChhHHHHHHHHHHhC
Q 005802 575 ------RNAELAGEAEEKLLRLEGNNKARYVQLANVY---AAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 575 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 624 (676)
+.++++++.+++++++.|++.-.+..++.+. ...|..++....+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578899999999999998754444433322 2357777888888888764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0013 Score=62.63 Aligned_cols=228 Identities=9% Similarity=-0.005 Sum_probs=151.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhc-ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-CH
Q 005802 368 KAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQA-ALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC-G-NM 443 (676)
Q Consensus 368 ~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 443 (676)
+.+..++|++++.+++.. .|+ ...++.--..+...+ .++++..++..+.... +-+..+++.-..++.+. + ++
T Consensus 66 ~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred hCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 344556777777776433 233 333444444445555 4777888887777655 45566676666666665 6 78
Q ss_pred HHHHHHHhhcCCC---CcchHHHHHHHHHHcCChh--------HHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCc----
Q 005802 444 TYAEIIFQNFIER---DLVLYNVMIACYAHHGHEE--------KAILLFEEMLEKGIKPDAVTFVAILSAFRHCGS---- 508 (676)
Q Consensus 444 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 508 (676)
+++.++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 8899999888754 4445555444444445555 8999999999864 3366777777777777765
Q ss_pred ---HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCH--------------------HHHHHHHHhCC-C------
Q 005802 509 ---VEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQL--------------------EKAIEFMKSIP-T------ 557 (676)
Q Consensus 509 ---~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~------ 557 (676)
++++++.++++... .|+ ...|+.+-..+.+.|+. .+..++..++. .
T Consensus 221 ~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred hHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 78899999888754 455 77787777777776653 44555555554 1
Q ss_pred -CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHH-cccCCCCccHHHHHH
Q 005802 558 -EEDAVILGSFLNVCRLNRNAELAGEAEEKLL-RLEGNNKARYVQLAN 603 (676)
Q Consensus 558 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 603 (676)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 3577788999999999999999999999997 558876665555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.06 E-value=7.3e-06 Score=67.68 Aligned_cols=74 Identities=8% Similarity=-0.041 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-C-------CC-cHHHH----HHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP-T-------EE-DAVIL----GSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.|..+..++.+.|++++|+..+++.. . .| +...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 77777888888888888877777665 4 55 45577 888999999999999999999999999999888
Q ss_pred HHHHHHH
Q 005802 598 YVQLANV 604 (676)
Q Consensus 598 ~~~l~~~ 604 (676)
..-+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 7666544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-05 Score=61.27 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 558 EEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+.++..+..+..++...|++++|+..++++++.+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4467788888889999999999999999999999999999999999999999999999999888754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-06 Score=70.04 Aligned_cols=87 Identities=15% Similarity=0.027 Sum_probs=63.7
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCC----------HhHHHHHHHHHHcccCCCCccHHHHHHHHHhc
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRN----------AELAGEAEEKLLRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 608 (676)
+.+.+++|++.+++.. .+.+...|..+..++...++ +++|+..|+++++++|+++.+|..|+.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445566666666555 34455666666666655554 45899999999999999999999999999887
Q ss_pred C-----------ChhHHHHHHHHHHhCCCc
Q 005802 609 G-----------NWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 609 g-----------~~~~A~~~~~~~~~~~~~ 627 (676)
| ++++|++.+++..+..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 4 899999999988876553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-05 Score=79.18 Aligned_cols=98 Identities=11% Similarity=-0.001 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCc---------------HHHHHHHHHHHHHhCCHhHHHHHHHHHHccc
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEED---------------AVILGSFLNVCRLNRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 591 (676)
...+..+...+.+.|++++|+..|+++. .+.+ ...|..+..++...|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4455556666666666666666666655 1122 4688889999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 592 GNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 592 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
|+++..|..++.+|...|++++|+..++++.+..+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999987644
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=59.47 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
...+..+...+.+.|++++|++.+++.. .+.+...+..+..++...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5667777888888888888888888776 44567778888888888999999999999999889988888888888877
Q ss_pred hcC
Q 005802 607 AEG 609 (676)
Q Consensus 607 ~~g 609 (676)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-05 Score=76.53 Aligned_cols=66 Identities=8% Similarity=-0.065 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+...|..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999988653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.1e-05 Score=76.30 Aligned_cols=158 Identities=9% Similarity=0.002 Sum_probs=116.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCH
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPD----------------AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPET 529 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 529 (676)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888776432211 1236778889999999999999999887543333332
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHccc------
Q 005802 530 ----DHYACMIDLYGRANQLEKAIEFMKSIP-------TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLE------ 591 (676)
Q Consensus 530 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 591 (676)
.+.+.+...+...|++++|.++++... ..+ ...++..++..+...|++++|...++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 233444455566789999998887764 122 34577788899999999999999999988662
Q ss_pred CCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 592 GNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 592 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
|.....+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22244788999999999999999999998865
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=66.74 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CC----HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC----HH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIK-PD----AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE----TD 530 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 530 (676)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455556666667777777776665542100 11 135566666777778888887777776432111111 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC----CCC----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccC
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP----TEE----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 592 (676)
.+..+...+...|++++|.+.+++.. ..+ ....+..+...+...|++++|...++++.+...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56677777888888888888877665 111 233566777788888999999999988887643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.98 E-value=1e-05 Score=64.22 Aligned_cols=77 Identities=8% Similarity=0.041 Sum_probs=55.9
Q ss_pred HHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 548 AIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 548 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
|++.+++.. .+.++..+..+..++...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444555443 33456677777777777888888888888888888877777888888888888888888888777654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00016 Score=75.15 Aligned_cols=167 Identities=7% Similarity=-0.076 Sum_probs=132.7
Q ss_pred HHHHHHHHhhcCC--C-CcchHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC--
Q 005802 443 MTYAEIIFQNFIE--R-DLVLYNVMIACYAHHGH----------EEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG-- 507 (676)
Q Consensus 443 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-- 507 (676)
.++|.+.++.+.. | +..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4566777776652 2 44566666666666666 899999999999853 235677877777788888
Q ss_pred cHHHHHHHHHHchhhcCCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh---------
Q 005802 508 SVEMGEKYFNSMTADYKISP-ETDHYACMIDLYGRAN-QLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN--------- 574 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------- 574 (676)
+++++++.++++.+. .| +...|+.-..++.+.| .++++++.++++. .+.+...|.....++...
T Consensus 124 ~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999865 34 4888888888888888 8999999999988 455788888888877663
Q ss_pred -----CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 575 -----RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 575 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
+.++++++.+.++++.+|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-05 Score=78.23 Aligned_cols=151 Identities=9% Similarity=-0.031 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccC
Q 005802 428 KLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCG 507 (676)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 507 (676)
..+..+...+.+.|++++|...|++....+.... .+...++..++...+. ...|..+..+|.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4567788889999999999999998653221111 1122333334332221 136777888899999
Q ss_pred cHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHH-HHHhCCHhHHHHH
Q 005802 508 SVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNV-CRLNRNAELAGEA 583 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~~~a~~~ 583 (676)
++++|...+++.... .|+ ...|..+..+|...|++++|+..|+++. ..| +...+..+... ....+..+.+...
T Consensus 245 ~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998754 454 7888899999999999999999999987 444 45555555555 3455678888999
Q ss_pred HHHHHcccCCCCc
Q 005802 584 EEKLLRLEGNNKA 596 (676)
Q Consensus 584 ~~~~~~~~p~~~~ 596 (676)
+++++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.3e-05 Score=81.12 Aligned_cols=123 Identities=7% Similarity=-0.080 Sum_probs=89.9
Q ss_pred hhccCcHHHHHHHHHHchhhc--CC---CCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CCC----cHHHHHH
Q 005802 503 FRHCGSVEMGEKYFNSMTADY--KI---SPE-TDHYACMIDLYGRANQLEKAIEFMKSIP------TEE----DAVILGS 566 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~~~ 566 (676)
+...|++++|..++++..+.. -+ .|+ ..+++.|..+|...|++++|+.++++.. ..| -..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446677777777776654321 11 233 5677788888888888888888877655 222 2336777
Q ss_pred HHHHHHHhCCHhHHHHHHHHHHcc-----cCCCCc---cHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 567 FLNVCRLNRNAELAGEAEEKLLRL-----EGNNKA---RYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 567 l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+...|...|++++|+.++++++++ .|++|. ....|..++...|++++|...+++++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999988866 566554 45678888899999999999999998754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.5e-05 Score=56.72 Aligned_cols=70 Identities=16% Similarity=-0.002 Sum_probs=61.7
Q ss_pred CCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 558 EEDAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
++++..+..+..++...++ .++|..+++++++.+|+++.....++..+.+.|++++|+..|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4577788888888765554 799999999999999999999999999999999999999999999987664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00043 Score=65.60 Aligned_cols=186 Identities=8% Similarity=-0.031 Sum_probs=137.8
Q ss_pred hcCCH-HHHHHHHhhcCCCCc---chHHHHHHHHHHcCC----------hhHHHHHHHHHHHCCCCCCHhHHHHHHHHhh
Q 005802 439 KCGNM-TYAEIIFQNFIERDL---VLYNVMIACYAHHGH----------EEKAILLFEEMLEKGIKPDAVTFVAILSAFR 504 (676)
Q Consensus 439 ~~g~~-~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 504 (676)
+.|.+ ++|..++..+...|+ .+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 34444 467777777764433 344443333333222 678999999998853 335677776666666
Q ss_pred ccC--cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh-----
Q 005802 505 HCG--SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQ-LEKAIEFMKSIP--TEEDAVILGSFLNVCRLN----- 574 (676)
Q Consensus 505 ~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----- 574 (676)
..| .+++++.+++.+.+.. +-|...|+.-..++.+.|. ++++++.+.++. .+.+...|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 667 5899999999998652 3347888888888888888 699999999888 566888898887777655
Q ss_pred ---------CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCc
Q 005802 575 ---------RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAE-----------GNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 575 ---------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 627 (676)
+.++++++.+.+++..+|+|.++|.-+-.++.+. +.++++++.++++.+..+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 4588999999999999999999998887777776 4688999999999886653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00013 Score=59.99 Aligned_cols=90 Identities=9% Similarity=-0.025 Sum_probs=49.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh---
Q 005802 535 MIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA--- 607 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 607 (676)
|...|...+..++|+++|++.....++.....+...|.. .+++++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455555544433444455555555544 45666666666666544 345556666666666
Q ss_pred -cCChhHHHHHHHHHHhCCC
Q 005802 608 -EGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 608 -~g~~~~A~~~~~~~~~~~~ 626 (676)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 5666666666666655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=8.6e-05 Score=60.38 Aligned_cols=90 Identities=8% Similarity=-0.048 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHHHHhC---CHhHHHHHHHHHHccc-C-CCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCce
Q 005802 558 EEDAVILGSFLNVCRLNR---NAELAGEAEEKLLRLE-G-NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGC 632 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 632 (676)
+++..+...+.+++.+++ +.++++.+++.+.+.. | .+...++.|+-.|.+.|++++|+++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 345555555555555555 4446666666666554 4 33555666666666666666666666666542
Q ss_pred eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 633 SWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
+|+..+.....+.++.++++.|.
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl 123 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGL 123 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhH
Confidence 55555555555666666666553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.9e-05 Score=76.95 Aligned_cols=116 Identities=13% Similarity=0.024 Sum_probs=89.9
Q ss_pred HHHhhcCCHHHHHHHHHhCC------CCC-c---HHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCCC---CccH
Q 005802 537 DLYGRANQLEKAIEFMKSIP------TEE-D---AVILGSFLNVCRLNRNAELAGEAEEKLLRL-----EGNN---KARY 598 (676)
Q Consensus 537 ~~~~~~g~~~~A~~~~~~~~------~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~ 598 (676)
..+..+|++++|+.++++.. ..| + ..+++.+..+|...|++++|+.+++++++. .|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999887765 122 2 347788888999999999999999999876 4444 4468
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 005802 599 VQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYE 670 (676)
Q Consensus 599 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (676)
..|+.+|...|++++|..++++..+.-. +. .| ..||.+.++...+.+...++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-VT----------------HG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------TC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-HH----------------hC-CCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876321 11 12 4599999999998887765544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.8e-05 Score=58.13 Aligned_cols=68 Identities=12% Similarity=-0.030 Sum_probs=62.6
Q ss_pred CcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 559 EDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++...+..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35567888889999999999999999999999999999999999999999999999999999987654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.72 E-value=3.4e-06 Score=81.16 Aligned_cols=84 Identities=6% Similarity=0.135 Sum_probs=42.8
Q ss_pred CCCcchHHHHH-HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHH
Q 005802 455 ERDLVLYNVMI-ACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYA 533 (676)
Q Consensus 455 ~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 533 (676)
+....-+..+. ..|.+++++.+++.+.+ ....|.-.+.....+|+.+-|.++++-..+. | +...|.
T Consensus 450 kHeL~eFRrIAA~LYkkn~rw~qsi~l~K---------kDklykDAietAa~S~~~elaeeLL~yFv~~-g---~~EcF~ 516 (624)
T 3lvg_A 450 KHELIEFRRIAAYLFKGNNRWKQSVELCK---------KDSLYKDAMQYASESKDTELAEELLQWFLQE-E---KRECFG 516 (624)
T ss_dssp TCSSHHHHHHHHHHHHTTCHHHHHSSCSS---------TTCCTTGGGTTTTTCCCTTHHHHHHHHHHHH-C---STHHHH
T ss_pred hCchHHHHHHHHHHHHhcccHHHHHHHHH---------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHc-C---chHHHH
Confidence 33433343332 33455566666654322 1222333444455666666666666666554 2 345555
Q ss_pred HHHHHHhhcCCHHHHHHH
Q 005802 534 CMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~ 551 (676)
..+-.|...=+++-++++
T Consensus 517 a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 517 ACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHhhccChHHHHHH
Confidence 555555555566666655
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00013 Score=72.83 Aligned_cols=116 Identities=10% Similarity=0.105 Sum_probs=86.9
Q ss_pred HHHHhhcCCHHHHHHHHHhCC------CCC-c---HHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCCC---Ccc
Q 005802 536 IDLYGRANQLEKAIEFMKSIP------TEE-D---AVILGSFLNVCRLNRNAELAGEAEEKLLRL-----EGNN---KAR 597 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~------~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~ 597 (676)
+..+.++|++++|++++++.. ..| + ..+++.++.+|...|++++|+.+++++++. .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444557788888888877653 122 2 336777888899999999999999988866 3444 446
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 005802 598 YVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELY 669 (676)
Q Consensus 598 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (676)
+..|+.+|...|++++|..++++..+.-. +. .| ..||.+.+++..|++....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VT----------------HG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----------------TC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hh----------------cC-CCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999876311 11 12 469999999999998887765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=4e-05 Score=63.12 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=57.0
Q ss_pred CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC----------HHHHHHHHHhCC--CCCcHHHHHHHHHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ----------LEKAIEFMKSIP--TEEDAVILGSFLNVCRL 573 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 573 (676)
+.+++|...++...+. .|+ ...|..+..++...++ +++|+..|++.. .+.+...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4455555555555432 343 5555555555555544 347777777766 44456677777777766
Q ss_pred h-----------CCHhHHHHHHHHHHcccCCCC
Q 005802 574 N-----------RNAELAGEAEEKLLRLEGNNK 595 (676)
Q Consensus 574 ~-----------~~~~~a~~~~~~~~~~~p~~~ 595 (676)
. |++++|+..|+++++++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 589999999999999999875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00019 Score=56.70 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=57.0
Q ss_pred HHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHH
Q 005802 511 MGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKL 587 (676)
Q Consensus 511 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 587 (676)
.|...|++..+ ..|+ ...+..+...|...|++++|+..+++.. .+.+...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666553 3344 6677777777778888888888777766 4445667777778888888888888888888
Q ss_pred HcccCC
Q 005802 588 LRLEGN 593 (676)
Q Consensus 588 ~~~~p~ 593 (676)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 877664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00095 Score=69.35 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=124.1
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCc----------HHHHHHHHHHchhhcCCCCC-HHHHHHHHHHH
Q 005802 472 GHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGS----------VEMGEKYFNSMTADYKISPE-TDHYACMIDLY 539 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 539 (676)
...++|++.++++... .|+ ...|+.--.++...|+ +++++..++.+.+. .|. ..+|..-..++
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 3467889999999984 565 4455554445555555 89999999999864 344 78888888889
Q ss_pred hhcC--CHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc------
Q 005802 540 GRAN--QLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR-NAELAGEAEEKLLRLEGNNKARYVQLANVYAAE------ 608 (676)
Q Consensus 540 ~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 608 (676)
.+.| ++++++++++++. .+.+...|..-..+....| .++++++.++++++.+|.+.++|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 7799999999998 6668889999888988989 899999999999999999999999999998874
Q ss_pred --------CChhHHHHHHHHHHhCCCc
Q 005802 609 --------GNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 609 --------g~~~~A~~~~~~~~~~~~~ 627 (676)
+++++|.+.++++....+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999888775543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00015 Score=54.18 Aligned_cols=66 Identities=21% Similarity=0.204 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
+...+..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456778888899999999999999999999999999999999999999999999999999988753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=7.1e-05 Score=74.41 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=69.7
Q ss_pred cCCHHHHHHHHHhCC------CCC-c---HHHHHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCCC---CccHHHHHH
Q 005802 542 ANQLEKAIEFMKSIP------TEE-D---AVILGSFLNVCRLNRNAELAGEAEEKLLRL-----EGNN---KARYVQLAN 603 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~------~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~ 603 (676)
.|++++|+.++++.. ..| + ..+++.+..+|...|++++|+.+++++++. .|++ ...++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 455666666655433 112 2 235667777778888888888888877755 3444 446889999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHH
Q 005802 604 VYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEIHIFTVGDVSHPKTNAIYSVLA 662 (676)
Q Consensus 604 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (676)
+|..+|++++|..++++..+.-.+ . .| ..||.+.+++..|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~-~----------------lG-~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV-A----------------HG-KDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-H----------------TC-TTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH-H----------------cC-CCChHHHHHHHHHh
Confidence 999999999999999988763211 1 12 45998888887765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0018 Score=52.94 Aligned_cols=111 Identities=15% Similarity=0.012 Sum_probs=92.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHH
Q 005802 472 GHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEK 547 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 547 (676)
+++++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999887 33333 667788888899999999998664 357778888888888 789999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHccc
Q 005802 548 AIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 548 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 591 (676)
|+++|++.....++.....+...|.. .++.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999998866788888889888888 899999999999998873
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00039 Score=53.19 Aligned_cols=65 Identities=3% Similarity=-0.053 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 529 TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 529 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
...+..+..+|.+.|++++|++.|+++. .+.++..|..+..++...|++++|+..+++++++.|.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 6677778888888888888888888776 4456677888888888888888888888888877554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.001 Score=51.90 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=61.3
Q ss_pred CCcHHHHHHHHHHHHHhCCHhH---HHHHHHHHHccc-C-CCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCce
Q 005802 558 EEDAVILGSFLNVCRLNRNAEL---AGEAEEKLLRLE-G-NNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGC 632 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 632 (676)
.++..+-..+.+++.++++... ++.+++.+.+.. | ..-.....|+-.+.+.|+|++|+++++.+.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~-------- 103 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 103 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------
Confidence 4566666666666666665444 777777766654 3 34456677777888888888888888877753
Q ss_pred eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 633 SWVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
+|...|......-++.+|.+.|.
T Consensus 104 ------------------eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 104 ------------------EPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHC--
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHhccC
Confidence 67777777777777788877763
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00048 Score=52.47 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=47.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHH-HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAV-ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
....+.+.|++++|++.++++. .+.+.. .+..+..++...|++++|+..++++++.+|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4556677788888888887766 344556 777777777888888888888888888888776655
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0013 Score=50.04 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHhhccCcHHHHHHHHHHchhhcCCCCC-HH-HHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhC
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADYKISPE-TD-HYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNR 575 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 575 (676)
...+...|++++|...++...+. .|+ .. .+..+..+|...|++++|++.|++.. ..| +...+.. +
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 33455566666666666666543 333 44 56666666666666666666666655 222 2222211 3
Q ss_pred CHhHHHHHHHHHHcccCCC
Q 005802 576 NAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~ 594 (676)
.+.++...+++.....|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4455555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0014 Score=63.42 Aligned_cols=394 Identities=10% Similarity=0.079 Sum_probs=212.8
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcC
Q 005802 24 TTITTNQLIHIYSKHNLLRESRKLFDEMPE--RNVFSWNTIISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAE 101 (676)
Q Consensus 24 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 101 (676)
|+..|..++.+..+.|.+++-...+.-.++ .++.+=+.|+-+|++.+++.+-++++. .||..--..+.+-|...|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~ 158 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEK 158 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHcc
Confidence 444455555555555555555555544433 333444455555555555444333222 244444455555555555
Q ss_pred CChhHHHHHHHHhHhc------------------cCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchh
Q 005802 102 GYEADALKLFIEMQSA------------------DEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAV 163 (676)
Q Consensus 102 ~~~~~a~~~~~~m~~~------------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (676)
.++ .|.-+|..+..- ...-.-++.||-.+-.+|...+.+..|.-.--.++-. ..-.
T Consensus 159 lYe-AAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL 232 (624)
T 3lvg_A 159 MYD-AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADEL 232 (624)
T ss_dssp CST-TSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCC
T ss_pred CHH-HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHH
Confidence 554 444443332110 0111335667888888888888777765444433333 3345
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCC--CCchhhHHHHHHHHHhcCChhHHHHHHhhCCC---CC-------CeeeHHHHH
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTE--EVNLISKNAMVAACCREGEMEMALKTFWRQPE---LN-------DAVSWNTLI 231 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-------~~~~~~~li 231 (676)
..++..|-..|.+++-+.+++.-.. +....+++-|.-.|++- +.++..+-++..-. .| ....|.-++
T Consensus 233 ~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elv 311 (624)
T 3lvg_A 233 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 311 (624)
T ss_dssp SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence 6788888899999999999986553 45667778777777775 44444444433221 22 344577777
Q ss_pred HHHHhcCChhHHHHHH-------------HHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHH
Q 005802 232 SGYVQNGDAEEGLKLF-------------VRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSS 298 (676)
Q Consensus 232 ~~~~~~g~~~~a~~~~-------------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (676)
-.|.+-.+++.|.... .+... -.+|...|--.|..|.... +..--+++.-+. ..+ | .+
T Consensus 312 fLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~-prl--D---h~ 382 (624)
T 3lvg_A 312 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK-PLLLNDLLMVLS-PRL--D---HT 382 (624)
T ss_dssp HHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHC-TTC--C---ST
T ss_pred HHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHHHHHHHHhC-hHHHHHHHHhcc-ccC--C---hH
Confidence 7777777776554321 11111 1234555555555554332 111112222111 011 1 11
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCchhHH-HHHHHHHhcCCHHHHHHHHhccCC------------CCchh-HHHHHH
Q 005802 299 GIVDVYCKCENMNYAESMLLLKGVRNSFSIS-SMIVGYSLQGNMEEARRHFDSLTE------------KNVVV-WTALFS 364 (676)
Q Consensus 299 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~------------~~~~~-~~~li~ 364 (676)
..++.+.+.|++..+...+......|....| ++-..|....+++.-+...+.-.. ....- -.+-..
T Consensus 383 RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~ 462 (624)
T 3lvg_A 383 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAY 462 (624)
T ss_dssp TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHH
Confidence 3455666677777666666666555555444 455667777776655444333222 22222 233345
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 005802 365 GYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMT 444 (676)
Q Consensus 365 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (676)
.|.+.++|.+++.+.++ .+.-.| .|.....+++.+-+.++++...+.| +...|.+.+..|...=+++
T Consensus 463 LYkkn~rw~qsi~l~Kk----DklykD------AietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpD 529 (624)
T 3lvg_A 463 LFKGNNRWKQSVELCKK----DSLYKD------AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPD 529 (624)
T ss_dssp HHHTTCHHHHHSSCSST----TCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCH
T ss_pred HHHhcccHHHHHHHHHh----cccHHH------HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChH
Confidence 67778888888776643 222222 3444566788888888888888866 4455666666666666666
Q ss_pred HHHHH
Q 005802 445 YAEII 449 (676)
Q Consensus 445 ~A~~~ 449 (676)
-+.++
T Consensus 530 vVlEl 534 (624)
T 3lvg_A 530 VVLET 534 (624)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0089 Score=56.82 Aligned_cols=137 Identities=9% Similarity=-0.023 Sum_probs=65.3
Q ss_pred CCcchHHHHHHHHH--HcC---ChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhc---cC-----cHHHHHHHHHHchh
Q 005802 456 RDLVLYNVMIACYA--HHG---HEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRH---CG-----SVEMGEKYFNSMTA 521 (676)
Q Consensus 456 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~---~g-----~~~~a~~~~~~~~~ 521 (676)
.+...|...+++.. ..+ ...+|..+|++.++ ..|+ ...+..+..+|.- .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35556666555432 222 34678888888877 3565 3344433333320 00 00011111111100
Q ss_pred hcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 522 DYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 522 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
....+.+..+|..+...+...|++++|...++++. ..|+...|..+...+...|++++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00112235555555555555566666666665555 33454455555555556666666666666666665543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.062 Score=41.82 Aligned_cols=141 Identities=8% Similarity=0.097 Sum_probs=99.7
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 547 (676)
+.-.|..++..++..+.... .+..-++-++--....-+-+-..++++..-+-+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34568888888888887763 244445555544445555566666776664332222 3455555
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 548 AIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 548 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
...-+-.+ ..+...++..+.....+|.-++-..++..+..-.|.+|+....++.+|.+.|+..+|.++++++-+.|++
T Consensus 80 Vi~C~~~~--n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555444 2445566667778889999999999999987777888999999999999999999999999999999985
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0033 Score=59.79 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=97.0
Q ss_pred CCCCHhHHHHHHHHhh--cc---CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhh---cC-C-------HHHHHHH
Q 005802 489 IKPDAVTFVAILSAFR--HC---GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGR---AN-Q-------LEKAIEF 551 (676)
Q Consensus 489 ~~p~~~~~~~ll~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 551 (676)
.+.+...|...+++.. .. .+..+|..+|++..+. .|+ ...|..+..+|.- .+ . ...+.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 4556777888776643 22 3457899999999854 787 5566655554431 11 1 1122332
Q ss_pred HHhCC-CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 552 MKSIP-TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 552 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
...+. .+.++.++..+...+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.++++....+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 22233 4567778888877788889999999999999999974 667789999999999999999999999887663
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.017 Score=52.55 Aligned_cols=103 Identities=11% Similarity=0.004 Sum_probs=80.0
Q ss_pred HHHHHHHHHH-Hhhc--CC------HHHHHHHHHhCC-CCCc---HHHHHHHHHHHHH-----hCCHhHHHHHHHHHHcc
Q 005802 529 TDHYACMIDL-YGRA--NQ------LEKAIEFMKSIP-TEED---AVILGSFLNVCRL-----NRNAELAGEAEEKLLRL 590 (676)
Q Consensus 529 ~~~~~~l~~~-~~~~--g~------~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~ 590 (676)
...|..++.+ +... |. ..+|...++++. ..|+ ...+..++..|.. -|+.++|.+.|++++++
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L 233 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY 233 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence 4556655543 2332 32 467777777776 4554 6688888888887 49999999999999999
Q ss_pred cCCC-CccHHHHHHHHHhc-CChhHHHHHHHHHHhCCCcccCc
Q 005802 591 EGNN-KARYVQLANVYAAE-GNWAEMGRIRKQMRGMKGNRFAG 631 (676)
Q Consensus 591 ~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 631 (676)
+|+. ...+..++..++.. |++++|.+.+++.....+...|+
T Consensus 234 nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 234 CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 9975 99999999999885 99999999999999987765454
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.011 Score=46.78 Aligned_cols=90 Identities=4% Similarity=-0.045 Sum_probs=63.1
Q ss_pred CCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCC-CCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCcee
Q 005802 558 EEDAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGN-NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCS 633 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 633 (676)
.|.+.+--.+.+++.++.+ ..+++.+++.+....|. .-.....|+-.+.+.|+|++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4566666666677766654 34677777777766663 3445667777888888888888888877753
Q ss_pred EEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCC
Q 005802 634 WVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAG 673 (676)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (676)
+|...|......-++.++.+.|.
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGl 129 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETL 129 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhch
Confidence 67777777777777788877775
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0026 Score=63.16 Aligned_cols=92 Identities=10% Similarity=-0.056 Sum_probs=62.0
Q ss_pred ccCcHHHHHHHHHHchhhc--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CCC----cHHHHHHHH
Q 005802 505 HCGSVEMGEKYFNSMTADY--KIS---PE-TDHYACMIDLYGRANQLEKAIEFMKSIP------TEE----DAVILGSFL 568 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~~~l~ 568 (676)
..|++++|..++++..+.. -+. |+ ..+++.|..+|...|++++|+.+++++. ..| -..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777776654321 122 33 5667778888888888888888877665 222 233677788
Q ss_pred HHHHHhCCHhHHHHHHHHHHcc-----cCCCCc
Q 005802 569 NVCRLNRNAELAGEAEEKLLRL-----EGNNKA 596 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~ 596 (676)
..|..+|++++|+.++++++++ .|++|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 8888888888888888888876 455543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.004 Score=48.64 Aligned_cols=92 Identities=4% Similarity=-0.015 Sum_probs=71.9
Q ss_pred CCcHHHHHHHHHHHHHhCC---HhHHHHHHHHHHcccCC-CCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCcee
Q 005802 558 EEDAVILGSFLNVCRLNRN---AELAGEAEEKLLRLEGN-NKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCS 633 (676)
Q Consensus 558 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 633 (676)
.|.+.+--.+.+++.++++ ..+++.+++.+.+..|. .-..+..|+-.+.+.|++++|+++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--------- 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---------
Confidence 4566676777777777664 45788888888877763 3566788889999999999999999988753
Q ss_pred EEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCCCC
Q 005802 634 WVYVEHEIHIFTVGDVSHPKTNAIYSVLAIFTGELYEIAGAF 675 (676)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (676)
+|...|......-++.+|.|.|--+
T Consensus 108 -----------------eP~N~QA~~Lk~~Ie~ki~kd~~~~ 132 (134)
T 3o48_A 108 -----------------ERNNKQVGALKSMVEDKIQKEENLY 132 (134)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhhcccc
Confidence 8888888888889999998877543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0059 Score=60.79 Aligned_cols=99 Identities=8% Similarity=-0.031 Sum_probs=68.7
Q ss_pred HHHhhccCcHHHHHHHHHHchhhc--CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhCC------CCC----cHHH
Q 005802 500 LSAFRHCGSVEMGEKYFNSMTADY--KISPE----TDHYACMIDLYGRANQLEKAIEFMKSIP------TEE----DAVI 563 (676)
Q Consensus 500 l~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~ 563 (676)
+..+.+.|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++. ..| -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888887765321 12232 5677788888888888888888877665 222 2336
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcc-----cCCCCccH
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRL-----EGNNKARY 598 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~ 598 (676)
++.+...|...|++++|+.++++++++ .|++|.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 777888899999999999999988876 56665443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.69 Score=48.01 Aligned_cols=113 Identities=10% Similarity=0.024 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAV----TFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKA 548 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 548 (676)
+.+.|...+......+ ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 5677777776665432 22222 1222333344444234444444443322 23322233333444466777777
Q ss_pred HHHHHhCCCCC-cHHHHH-HHHHHHHHhCCHhHHHHHHHHHHc
Q 005802 549 IEFMKSIPTEE-DAVILG-SFLNVCRLNRNAELAGEAEEKLLR 589 (676)
Q Consensus 549 ~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~ 589 (676)
...|+.+...+ +..-|. =+..++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777776322 212221 122345566777777777777764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.014 Score=43.49 Aligned_cols=68 Identities=10% Similarity=-0.033 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC
Q 005802 527 PETDHYACMIDLYGRANQ---LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN 594 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 594 (676)
+++..+..+..++...++ .++|..++++.. .+.++..+..++..+...|++++|+..|+++.+.+|.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 457778888888765444 789999999888 56677788888889999999999999999999998883
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0083 Score=45.97 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 528 ETDHYACMIDLYGRANQLEKAIEFMKSIP---------TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 528 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
+..-+..|...+.+.|++..|..+++.+. ..+...++..+..++.+.|+++.|...++++.+..|+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444556666777777777777766654 123456778888899999999999999999999999987665
Q ss_pred HHH
Q 005802 599 VQL 601 (676)
Q Consensus 599 ~~l 601 (676)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.014 Score=47.50 Aligned_cols=90 Identities=17% Similarity=-0.001 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CC-C--cHHHHHHHHHHHHHhCCHhHH
Q 005802 508 SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRAN---QLEKAIEFMKSIP-TE-E--DAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~a 580 (676)
....+.+.|...... + .++..+.-.+..++++.+ +.++++.++++.. .. | ....+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344555555555442 2 356777777788888777 5567887777766 22 3 345666777788999999999
Q ss_pred HHHHHHHHcccCCCCccHH
Q 005802 581 GEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~ 599 (676)
.+.++.+++.+|++.....
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999998754433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.68 Score=50.73 Aligned_cols=127 Identities=13% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHH
Q 005802 298 SGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFD 377 (676)
Q Consensus 298 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 377 (676)
..++..+.+.|..+.|.++.+. . ..-.......|++++|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 4444555555555555543311 0 111233455677777778776664 45678888888888888888888
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 005802 378 LLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIF 450 (676)
Q Consensus 378 ~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (676)
.|.++ .. |..+...+...++.+....+-+.....| -++.-..+|.+.|++++|.+++
T Consensus 703 ~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 703 AFTNA-HD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHH-TC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHc-cC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 88876 22 3344444444555554444443333332 1222333444555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.1 Score=57.31 Aligned_cols=126 Identities=12% Similarity=0.163 Sum_probs=81.0
Q ss_pred hHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHH
Q 005802 164 SSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEG 243 (676)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 243 (676)
..++..+.+.|.+++|+++.+.- ..-.......|++++|.++.+.+. +...|..+...+.+.|+++.|
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~---------~~~f~~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A 700 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ---------DQKFELALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLA 700 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH---------HHHHHHHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc---------chheehhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHH
Confidence 56666777778888877766421 112344566788888888877665 557888888888889999999
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 005802 244 LKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESM 316 (676)
Q Consensus 244 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 316 (676)
...|..+.. |..+...+...++.+...++.+.....|. ++.-..+|.+.|++++|.++
T Consensus 701 ~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 701 IEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp HHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHH
Confidence 888887754 23344444446666666555555554442 23334445556666666633
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.77 E-value=2.8 Score=45.36 Aligned_cols=252 Identities=12% Similarity=0.018 Sum_probs=133.2
Q ss_pred HHHHhcCCHHHHHHHHhccCCC----Cch--hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCC---H--hHHHHHHH
Q 005802 333 VGYSLQGNMEEARRHFDSLTEK----NVV--VWTALFSGYVKAQNCEALFDLLSEFVTKEG-VVTD---A--LILVILLG 400 (676)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~---~--~~~~~ll~ 400 (676)
-+....|+.++++.+++..... +.. .=..+.-+....|..+++..++...+.... +.-+ . ..-..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3566778888888888876641 211 223344556667776778887777644322 1111 1 11122222
Q ss_pred HHHhhcC-hhHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHhhcCCC-CcchH--HHHHHHHHHcCCh
Q 005802 401 ACALQAA-LHPGKEIHAYILRMGVQMDK--KLISTLVDMYSKCGNMTYAEIIFQNFIER-DLVLY--NVMIACYAHHGHE 474 (676)
Q Consensus 401 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~--~~l~~~~~~~~~~ 474 (676)
+....|. -+++...+..+....- +.. ..-.+|.-.+...|+-+....++..+.+. +.... .++.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2222332 2344444444443221 111 11123344455667777777777654422 22222 2333344567888
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHH---HHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005802 475 EKAILLFEEMLEKGIKPDAVTFV---AILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEF 551 (676)
Q Consensus 475 ~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 551 (676)
+.+..+++.+... ..|. .-|. .+.-+|+..|+......+++.+... ...+......+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888763 1222 2232 3345688889988888888888653 233344444555555567776666677
Q ss_pred HHhCCCCCcHHHHHHHHHHH--HHhCC-HhHHHHHHHHHHc
Q 005802 552 MKSIPTEEDAVILGSFLNVC--RLNRN-AELAGEAEEKLLR 589 (676)
Q Consensus 552 ~~~~~~~~~~~~~~~l~~~~--~~~~~-~~~a~~~~~~~~~ 589 (676)
++.+....++.+......++ ...|+ ..++...++.+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 66554334444444333333 22333 2567777777753
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.023 Score=43.43 Aligned_cols=66 Identities=12% Similarity=-0.055 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhCCHhHHHHHHHHHHccc-------CCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 561 AVILGSFLNVCRLNRNAELAGEAEEKLLRLE-------GNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 561 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
......++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 3445578888999999999999999999873 22356789999999999999999999999986544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.75 Score=38.39 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=55.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHH
Q 005802 435 DMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEK 514 (676)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 514 (676)
+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3344566666666665554 3455667777777777777777666665432 2233333444555555554
Q ss_pred HHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 515 YFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 515 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
+-+....+ | -++.-...+.-.|+++++++++.+..
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44433222 1 12333344445666666666665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.044 Score=43.76 Aligned_cols=52 Identities=8% Similarity=-0.047 Sum_probs=25.6
Q ss_pred CCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 575 RNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+|.++|.++|+.+++....=+.+|...+.--.++|+.+.|++++.+....++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 4555555555555544222233333444444455555555555555555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.046 Score=57.68 Aligned_cols=59 Identities=15% Similarity=0.025 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+..-...|...|+++.|+.+.+++....|.+-.+|..|+.+|...|+|+.|+-.+..+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34445567789999999999999999999999999999999999999999999999885
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.19 Score=39.18 Aligned_cols=90 Identities=14% Similarity=-0.044 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHH---HHHHHHhCCCC--C--cHHHHHHHHHHHHHhCCHhHH
Q 005802 508 SVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEK---AIEFMKSIPTE--E--DAVILGSFLNVCRLNRNAELA 580 (676)
Q Consensus 508 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 580 (676)
....+.+.|...... +. |+..+--.+..++.+..+..+ ++.++++.... | ....+-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555544433 32 666666677777777776555 77777776622 2 223445566688899999999
Q ss_pred HHHHHHHHcccCCCCccHH
Q 005802 581 GEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 581 ~~~~~~~~~~~p~~~~~~~ 599 (676)
.+.++.+++..|++..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999998765444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.25 Score=38.49 Aligned_cols=141 Identities=9% Similarity=-0.050 Sum_probs=94.6
Q ss_pred HHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 005802 135 CVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKT 214 (676)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 214 (676)
+.-.|.++++.++.....+.. +..-|+=+|.-....-+-+...+.++.+.+-.|. ..+|++......
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHH
Confidence 345677777777777776651 1223555555555555666666666655542222 234555555555
Q ss_pred HhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005802 215 FWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
+-.+. .+....+..+..+...|+-+.-.+++..+.. +.+|+......+..+|.+.|+...+.+++.++.+.|++
T Consensus 84 ~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544 3455667778888889999888888888644 45678888888889999999999999999999888863
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.055 Score=49.21 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHHHHHHHHHchhhcCCCCC---HHHHHHHHHHHhh-----cCCHHHHHHHHHhCC-CCC--cHHHHHHHHHHHHH-hCC
Q 005802 509 VEMGEKYFNSMTADYKISPE---TDHYACMIDLYGR-----ANQLEKAIEFMKSIP-TEE--DAVILGSFLNVCRL-NRN 576 (676)
Q Consensus 509 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~-~~~ 576 (676)
...|...+++.. .+.|+ -..|..|...|.+ -|+.++|.+.|++.. ..| +..+.......++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 345555555554 33555 3466677777766 377777777777776 444 25555566666555 477
Q ss_pred HhHHHHHHHHHHcccCC
Q 005802 577 AELAGEAEEKLLRLEGN 593 (676)
Q Consensus 577 ~~~a~~~~~~~~~~~p~ 593 (676)
.+.+.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77888888887777655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.02 E-value=2.3 Score=35.46 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=51.6
Q ss_pred hcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHH
Q 005802 337 LQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHA 416 (676)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 416 (676)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+. . -+..+.-.|...|+.+....+-+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~---------D~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ-H---------SFDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-T---------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh-C---------CHHHHHHHHHHhCCHHHHHHHHH
Confidence 445555555665554 24556777777777777777777777654 1 13333334444555554444444
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 005802 417 YILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNF 453 (676)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 453 (676)
.....| -++.-...+.-.|+++++.++|.+.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333333 1233334444555565555555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.29 Score=39.20 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 542 ANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 542 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
.++.++|.++|+.+. .+.-...|......-.++|+...|..++.+++.+.|.+..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 367777777777664 2333666766667777889999999999999988776543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.19 E-value=5.5 Score=37.23 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCcHhHHHHHHHHHh
Q 005802 195 KNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLF----VRMGENGVRWNEHTFASALSACC 270 (676)
Q Consensus 195 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 270 (676)
+.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +.+.+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344555666677777777665322 23455566665555544 55556788888888777777776
Q ss_pred CCCCh--H---HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhcCCHHH
Q 005802 271 GLRNV--K---CAKEIHSWVLKNG--LISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQGNMEE 343 (676)
Q Consensus 271 ~~~~~--~---~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (676)
....- + -..+.+.+-.+.| ..-|+.....+...|.+.+++.+|+.-|-....++...+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 55432 1 1222333333444 334777788888888888888888877653333333556555554443332111
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 344 ARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 344 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
+ +... .-.+-.|...++...|..++...
T Consensus 186 ~----------dlfi-aRaVL~yL~l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 186 A----------PLYC-ARAVLPYLLVANVRAANTAYRIF 213 (336)
T ss_dssp H----------HHHH-HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H----------HHHH-HHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 1111 12233355566777776666555
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.5 Score=38.71 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=64.5
Q ss_pred CCCCCCH--hHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHhCC-
Q 005802 487 KGIKPDA--VTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-------TDHYACMIDLYGRANQLEKAIEFMKSIP- 556 (676)
Q Consensus 487 ~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 556 (676)
.|+.|.. .++..-+..+...|.++.|.-+.+.+..-.+..|+ ..++..+.+++...|++.+|...|+++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455543 34445566677778888888777765443222333 2355566777777777777777776643
Q ss_pred ----CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 557 ----TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 557 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
..........+ .. ...... -.. .+.+.+.-+.++.+|.+.|++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~-~~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPST-GN---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccc-cc---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 01111110000 00 000000 000 12223466789999999999999999998653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.76 E-value=10 Score=37.63 Aligned_cols=126 Identities=10% Similarity=0.085 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--------CC--chhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHH
Q 005802 331 MIVGYSLQGNMEEARRHFDSLTE--------KN--VVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLG 400 (676)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~~~~--------~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 400 (676)
.++.|...+++..|..++.++.. |+ ...|...+..+...+++.+|...|.+......+..|...+..++.
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLS 262 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 34444445555555455544321 11 124556666777778888888877776433333333322221111
Q ss_pred ----HHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhhcCCC
Q 005802 401 ----ACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC--GNMTYAEIIFQNFIER 456 (676)
Q Consensus 401 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~ 456 (676)
...-.+....-..+.........-++...+..++.+|... .+++...+.|.....+
T Consensus 263 ~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 263 HIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred HHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 1111111111122222222222234455666666666543 3466666666655433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.09 E-value=12 Score=34.74 Aligned_cols=164 Identities=13% Similarity=0.176 Sum_probs=99.0
Q ss_pred HHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCcHhHHHHHHHHHhC
Q 005802 196 NAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKL----FVRMGENGVRWNEHTFASALSACCG 271 (676)
Q Consensus 196 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 271 (676)
.++..-|.+.+++++|++++..- ...+.+.|+...|.++ .+...+.+++++......++..+..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34555566666666666665322 2344556776665554 4555667888888888877777655
Q ss_pred CCC-----hHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCchhHHHHHHHHHhc---CCH
Q 005802 272 LRN-----VKCAKEIHSWVLKNGL--ISNPFVSSGIVDVYCKCENMNYAESMLLLKGVRNSFSISSMIVGYSLQ---GNM 341 (676)
Q Consensus 272 ~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---~~~ 341 (676)
... ..-..+...+..+.|- .-++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 331 1223333444444432 347788999999999999999999877644333566666666655444 443
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 005802 342 EEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEF 382 (676)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 382 (676)
.++--++ .-.+-.|...++...|..+|...
T Consensus 185 ~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 185 STVAEFF-----------SRLVFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHH
T ss_pred chHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH
Confidence 3322211 11233455677888888888776
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.70 E-value=2.8 Score=34.39 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=14.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 533 ACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 533 ~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
-.+..+|.+.|++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345566666666666666666665
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.62 E-value=18 Score=34.92 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=11.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 005802 464 MIACYAHHGHEEKAILLFEEMLE 486 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~ 486 (676)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444455555555555544443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.33 E-value=1.3 Score=34.74 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhhcCCH---HHHHHHHHhCC-CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 527 PETDHYACMIDLYGRANQL---EKAIEFMKSIP-TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
|+..+--.+..++.+..+. .+++.++++.. ..| ....+-.+.-++.+.|+++.|.+..+.+++..|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4455555556666655543 34555555544 223 23345555667778888888888888888888876543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.97 E-value=4.4 Score=32.20 Aligned_cols=72 Identities=14% Similarity=0.048 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHhhcCCH---HHHHHHHHhCC-CCC--cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 526 SPETDHYACMIDLYGRANQL---EKAIEFMKSIP-TEE--DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 526 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
.|+..+--.+..++.+..+. .+++.++++.. ..| ....+-.+.-++.+.|++++|.++.+.+++..|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 46666666777777777644 45666766655 223 33455566668999999999999999999999987543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.76 E-value=4.1 Score=36.47 Aligned_cols=121 Identities=15% Similarity=0.171 Sum_probs=69.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHH----HHHHHHHHHhhc
Q 005802 467 CYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETD----HYACMIDLYGRA 542 (676)
Q Consensus 467 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 542 (676)
...+.|+.++|++....-++.. +-|...-..|++.+|-.|++++|..-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 4456788888888777777653 33555566677888888888888888877753 355532 33333332
Q ss_pred CCHHHHHHHHHhCC----CCCcHHHHHHHHHHH--HHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 543 NQLEKAIEFMKSIP----TEEDAVILGSFLNVC--RLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 543 g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
...-+ ++|.--. ......-...++.+. ...|+.++|..+-.++.+..|..+..
T Consensus 78 E~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 AQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 11111 1222111 111222333444443 45688888888888888777665543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.34 E-value=10 Score=43.06 Aligned_cols=165 Identities=8% Similarity=0.001 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcC
Q 005802 328 ISSMIVGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAA 407 (676)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 407 (676)
...++..+...+..+-+.++...... ++...-.+..++...|++++|...|++. ..|+..+......+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~--------- 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVL--------- 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSH---------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhhh---------
Confidence 34456667777777777776655543 3333345566778888888888888773 33443321110000
Q ss_pred hhHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCCc----chHHHHHHHHHHcCChhHH
Q 005802 408 LHPGKEIHAYILRMG--VQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI----ERDL----VLYNVMIACYAHHGHEEKA 477 (676)
Q Consensus 408 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~A 477 (676)
. . +..+.... ...-..-|..++..+.+.+.++.+.++-.... ..+. ..|..+.+.+...|++++|
T Consensus 883 -~---~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 883 -R---E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp -H---H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred -c---c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0 0 00011100 01112335556666666666666655443221 1111 2577778888888888888
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHH
Q 005802 478 ILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEM 511 (676)
Q Consensus 478 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 511 (676)
...+-.+..... -...+..|+..++..|..+.
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 888877766433 34556666666666555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.30 E-value=2.4 Score=31.10 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+.-+..+-++.+....+.|++....+.+++|.+.+++.-|.++++.++.+- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 445666777777778889999999999999999999999999999887653 333556766665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.79 E-value=1.3 Score=43.19 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 566 SFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 566 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
.++.++...|+++++...+..+...+|-+...|..|..+|.+.|+..+|++.|+.+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555667777777777777777777777777777777777777777777666544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.47 E-value=4.6 Score=42.81 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=36.9
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
|...|+++.|+.+-++.. ...|+ ..+|..|+.+|...|+++.|+-.+..++
T Consensus 347 Ll~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 445677777777777765 33566 7777777777777777777777777765
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=85.91 E-value=16 Score=31.46 Aligned_cols=49 Identities=16% Similarity=0.013 Sum_probs=20.1
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCC
Q 005802 190 VNLISKNAMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGD 239 (676)
Q Consensus 190 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~ 239 (676)
++.......+..+.+.|..+..-.+.+.+. .++...-...+.++.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALK-DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444333333333333 3343333344444444443
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=84.84 E-value=21 Score=32.40 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHhcCChhHHHHHHhhCCCCC---CeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 005802 199 VAACCREGEMEMALKTFWRQPELN---DAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWN 258 (676)
Q Consensus 199 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 258 (676)
+...+..|+.+-+..+++..+..+ +....+.+. ..+..|+.....++++.+.+.|..++
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCC
Confidence 444455666666666665433222 222222332 23345555555566666666665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.36 E-value=30 Score=39.25 Aligned_cols=148 Identities=8% Similarity=0.040 Sum_probs=89.0
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHh--------------------CC--
Q 005802 197 AMVAACCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGE--------------------NG-- 254 (676)
Q Consensus 197 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------------------~g-- 254 (676)
.++..+.+.|..+.+.++....+. +...--.+..++...|++++|.+.|++.-. ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~--~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS--DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC--CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC--CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 344445555555555555444431 222223334455555666666666544311 00
Q ss_pred CCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCChHHHHHHHHhcCCC--CchhH
Q 005802 255 VRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNP----FVSSGIVDVYCKCENMNYAESMLLLKGVR--NSFSI 328 (676)
Q Consensus 255 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~ 328 (676)
...-..-|.-++..+.+.+.++.+.++-....+.....+. ..|..+...+...|++++|...+..++.+ -....
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cL 974 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCL 974 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHH
Confidence 0112345777888888889999888888877765432222 25788889999999999998888766543 23456
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 005802 329 SSMIVGYSLQGNMEEARR 346 (676)
Q Consensus 329 ~~li~~~~~~~~~~~a~~ 346 (676)
..|+..+|..|..+.-..
T Consensus 975 r~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 975 LDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhCCChhhhhC
Confidence 777777887777665443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=42 Score=34.82 Aligned_cols=112 Identities=11% Similarity=-0.033 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHH----HHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 005802 239 DAEEGLKLFVRMGENGVRWNEHTF----ASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAE 314 (676)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 314 (676)
+++.|...+......+. .+.... ..+.......+....+...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 56777777766654321 222211 122222333342334444444433222 22222333333344556666666
Q ss_pred HHHHhcCCCC---chhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 005802 315 SMLLLKGVRN---SFSISSMIVGYSLQGNMEEARRHFDSLTE 353 (676)
Q Consensus 315 ~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 353 (676)
..|..+.... ....--+.+++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6666555421 11112233344555666666666665554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.10 E-value=30 Score=32.31 Aligned_cols=165 Identities=14% Similarity=0.108 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHH----HHHHHCCCCCCHhHHHHHHHHhh
Q 005802 429 LISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLF----EEMLEKGIKPDAVTFVAILSAFR 504 (676)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 504 (676)
++.++..=|.+.+++++|.+++.. -...+.+.|+...|.++. +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344566668888999999887643 233456667766665544 55566788888888777777766
Q ss_pred ccCc--H------HHHHHHHHHchhhcC--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Q 005802 505 HCGS--V------EMGEKYFNSMTADYK--ISPETDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLN 574 (676)
Q Consensus 505 ~~g~--~------~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 574 (676)
.... + .+|+.+-.. +| ..-++.....+...|.+.+++.+|...|-- ...+.+..+..++.-+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~----~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKK----FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHH----HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHh
Confidence 5442 1 222222222 13 223477788899999999999999988832 2233445666666555444
Q ss_pred CCHhHHHHHHHHHHcccCCCCccHHH-HHHHHHhcCChhHHHHHHHHHHhC
Q 005802 575 RNAELAGEAEEKLLRLEGNNKARYVQ-LANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 575 ~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
+. |.....|.. .+--|...|+...|..+++...+.
T Consensus 181 ~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 181 DE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp SC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33 222233322 234477789999999988777653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.57 E-value=7.4 Score=37.79 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchh----hcCCCCCHHHHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTA----DYKISPETDHYA 533 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 533 (676)
...++..+...|++.+|+..+..+.... +.+...+..++.++...|+..+|++.|+.+.. +.|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445667778888999888888887642 44677888899999999999999888887643 458888866543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.31 E-value=12 Score=27.59 Aligned_cols=63 Identities=19% Similarity=0.091 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005802 239 DAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVD 302 (676)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (676)
+.-+..+-++.+....+.|+.....+.+++|.+.+++..|.++++-+....- +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 4445666777777778889999999999999999999999999988766532 22445665553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.78 E-value=5.1 Score=31.23 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+.-+..+-++.+....+.|++......+.+|.+.+|+..|.++|+.++.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34455666777777888999999999999999999999999999998764 3444666776665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 676 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 10/187 (5%)
Query: 433 LVDMYSKCGNMTYAEIIFQNFIERD---LVLYNVMIACYAHHGHEEKAILLFEEMLEKGI 489
L +++ G + A F+ + D L Y + ++A+ + L
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 490 KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKA 548
AV + + G +++ + ++ P D Y + + + +A
Sbjct: 235 -NHAVVHGNLACVYYEQGLIDLAIDTYRRA---IELQPHFPDAYCNLANALKEKGSVAEA 290
Query: 549 IEFMK--SIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYA 606
+ A L + N+ R N E A K L + A + LA+V
Sbjct: 291 EDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 607 AEGNWAE 613
+G E
Sbjct: 351 QQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 4e-04
Identities = 37/303 (12%), Positives = 87/303 (28%), Gaps = 10/303 (3%)
Query: 338 QGNMEEARRHFDSLTEK---NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALI 394
G+ E A RH L + N V L S + + + + + + + ++ +A
Sbjct: 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 395 LVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI 454
+ + + I Y + ++ D + +
Sbjct: 72 NL----GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 455 ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEK 514
+ + + + + + K I+ VA + +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 515 YFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPT--EEDAVILGSFLNVC 571
+ + P D Y + ++ A ++A+ + AV+ G+ V
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 572 RLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAG 631
+LA + + + L+ + Y LAN +G+ AE +
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Query: 632 CSW 634
+
Sbjct: 308 LNN 310
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.003
Identities = 43/363 (11%), Positives = 100/363 (27%), Gaps = 19/363 (5%)
Query: 5 NLKEALICHVQAIKAGLTLTTITTNQLIHIYSKHNLLRESRKLFDEMPERN---VFSWNT 61
+ + A +Q + T + L I+ + L S ++N +++
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72
Query: 62 IISACIKSHDLKQARSLFDSSPHKDLVTYNSMLCGYINAEGYEADALKLFIEMQSADEHI 121
+ + + L++A + + + + + + + +
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 122 RMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACR 181
+ L + N A A S+L +++ A
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV--AWSNLGCVFNAQGEIWLAIH 190
Query: 182 VFEGCTE--EVNLISKNAMVAACCREGEMEMALKTFWRQPELND--AVSWNTLISGYVQN 237
FE L + + + A+ + R L+ AV L Y +
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250
Query: 238 GDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVS 297
G + + + + H + + L+ E +
Sbjct: 251 GLIDLAIDTY----RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 298 SGIVDVYCKCENMNYAESMLLLKGV-----RNSFSISSMIVGYSLQGNMEEARRHFDSLT 352
S K E N E++ L + + + S++ QG ++EA H+
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
Query: 353 EKN 355
+
Sbjct: 367 RIS 369
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 676 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.54 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.87 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.77 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.6 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.58 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.45 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.45 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.36 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.25 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.19 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.17 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.17 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.0 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.77 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.75 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.74 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.69 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.65 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.34 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.21 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.99 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.81 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.42 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.67 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.5 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.8 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.34 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.51 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.7e-20 Score=185.26 Aligned_cols=367 Identities=13% Similarity=0.069 Sum_probs=242.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 005802 234 YVQNGDAEEGLKLFVRMGENGVRW-NEHTFASALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNY 312 (676)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 312 (676)
+.+.|++++|.+.|+++.+.. | +...+..+...+...|++++|...++.+++.. +.+...+..+..+|.+.|++++
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 344455555555555554421 2 23344444445555555555555555555443 1233445555555555555555
Q ss_pred HHHHHHhcCCC---CchhHHHHHHHHHhcCCHHHHHHHHhcc---CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005802 313 AESMLLLKGVR---NSFSISSMIVGYSLQGNMEEARRHFDSL---TEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKE 386 (676)
Q Consensus 313 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 386 (676)
|...+...... +...+..........+....+....... ..................+....+...+......
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET- 164 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc-
Confidence 55554443321 1112222222222222222222222221 1223344445555566667777777777665322
Q ss_pred CCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHH
Q 005802 387 GVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNV 463 (676)
Q Consensus 387 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 463 (676)
.+.+...+..+...+...++.+.|...+....+.. +.+...+..+...+...|++++|...++... ..+...+..
T Consensus 165 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d1w3ba_ 165 -QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence 23345566666677777888888888887777654 4456677888888888899999888888765 345567777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhc
Q 005802 464 MIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRA 542 (676)
Q Consensus 464 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 542 (676)
+...+.+.|++++|+..|++..+. .|+ ..++..+...+...|++++|...++..... .+.+...+..+...+.+.
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHC
Confidence 888889999999999999998874 454 667888888899999999999999988653 334577888889999999
Q ss_pred CCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCC
Q 005802 543 NQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGN 610 (676)
Q Consensus 543 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 610 (676)
|++++|++.++++. .+.++.++..++.++...|++++|+..++++++++|+++.+|..|+.+|.+.||
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998876 344677888888899999999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6e-20 Score=182.66 Aligned_cols=352 Identities=14% Similarity=0.075 Sum_probs=285.8
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CchhHHHHHHHHHhcCCH
Q 005802 265 ALSACCGLRNVKCAKEIHSWVLKNGLISNPFVSSGIVDVYCKCENMNYAESMLLLKGV--R-NSFSISSMIVGYSLQGNM 341 (676)
Q Consensus 265 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~ 341 (676)
+...+.+.|+++.|.+.++++.+.. +.++..+..+..+|.+.|++++|...+++... | +..++..+...+...|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3445667899999999999998875 34677888899999999999999999987654 3 456888899999999999
Q ss_pred HHHHHHHhccCCC---CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHH
Q 005802 342 EEARRHFDSLTEK---NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYI 418 (676)
Q Consensus 342 ~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 418 (676)
++|++.+...... +...+..........+....+....... ... ..................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA-LQY-NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-HHH-CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccccchhhhhHHHHHHh
Confidence 9999999887652 3334444555555566666666666654 222 2333344444555556667777777777666
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhH
Q 005802 419 LRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVT 495 (676)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 495 (676)
.... +.+...+..+...+...|+++.|...+++.. +.+...|..+...+...|++++|...+++....+ ..+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 6654 4566778888999999999999999998765 3356688899999999999999999999998854 345667
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR 572 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 572 (676)
+..+...+.+.|++++|...|++..+ +.|+ ...+..+..++...|++++|++.++... .+.+...+..+..++.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 78888899999999999999999874 3565 7889999999999999999999998877 5667888999999999
Q ss_pred HhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
..|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998864
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=6.7e-14 Score=134.47 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=151.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 005802 361 ALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKC 440 (676)
Q Consensus 361 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (676)
.....+.+.|++++|+..|++.+... +-+...+..+..++...|+++.|...+..+.+.. +.+..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~------------ 88 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQT------------ 88 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccc------------
Confidence 34455666777777777777653221 2233444445555555555555555555544433 22333
Q ss_pred CCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHh----------------HHHHHHHHhh
Q 005802 441 GNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAV----------------TFVAILSAFR 504 (676)
Q Consensus 441 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----------------~~~~ll~~~~ 504 (676)
.|..+...|...|++++|.+.+++.... .|+.. .....+..+.
T Consensus 89 -------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
T d1fcha_ 89 -------------------ALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 147 (323)
T ss_dssp -------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHH
T ss_pred -------------------ccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHH
Confidence 4444444555555555555555554442 12110 0111122233
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHH
Q 005802 505 HCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGE 582 (676)
Q Consensus 505 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 582 (676)
..+.+.+|...+.+......-.++...+..+...+...|++++|+..+++.. .+.+...|..++.++...|++++|+.
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence 4466777888888776543334456778888899999999999999998876 45567788889999999999999999
Q ss_pred HHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 583 AEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 583 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
.++++++.+|+++.++..|+.+|.+.|++++|++.+++..+..+
T Consensus 228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998877533
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.9e-13 Score=128.96 Aligned_cols=265 Identities=12% Similarity=0.029 Sum_probs=194.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC--C-CchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhc
Q 005802 330 SMIVGYSLQGNMEEARRHFDSLTE--K-NVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQA 406 (676)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 406 (676)
.....+.+.|++++|+..|+++.+ | +..+|..+..++...|++++|+..|.+.+... +-+...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccccccc
Confidence 456678899999999999999864 3 45688999999999999999999999975432 335667777888899999
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 005802 407 ALHPGKEIHAYILRMGVQMDKKLI-STLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEML 485 (676)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 485 (676)
++++|...+..+.... |+.... ....... ...+.......+..+...+...+|.+.+.+..
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999998887754 221111 0000000 00011111112233445567788888888877
Q ss_pred HCCC-CCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcH
Q 005802 486 EKGI-KPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDA 561 (676)
Q Consensus 486 ~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 561 (676)
.... .++...+..+...+...|++++|...++..... .|+ ...|..+..+|.+.|++++|++.++++. .+.++
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 6322 234667778888899999999999999998754 455 8889999999999999999999999887 45577
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc-----------HHHHHHHHHhcCChhHHHHH
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR-----------YVQLANVYAAEGNWAEMGRI 617 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~ 617 (676)
..+..++.+|...|++++|+..|++++++.|++... +..+..++...|+.+.+...
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 889999999999999999999999999998887553 45566677777777655433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=5.2e-09 Score=101.06 Aligned_cols=193 Identities=9% Similarity=-0.003 Sum_probs=120.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC-------CCC----cchHHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CCHhH
Q 005802 431 STLVDMYSKCGNMTYAEIIFQNFI-------ERD----LVLYNVMIACYAHHGHEEKAILLFEEMLEKGIK----PDAVT 495 (676)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~----p~~~~ 495 (676)
..+...+...|++..+...+.... .+. ...+..+...+...|+++.+...+.+....... ....+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 344455566666666665555432 111 123445566677778888888887777653211 12334
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCC---CC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----cHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKIS---PE--TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-----DAVIL 564 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~ 564 (676)
+......+...+++..+...+.......... +. ...+..+...+...|++++|...+++.. ..| ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 4445555666777777777666553321111 11 2345556667778888888888888766 111 22345
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcc------cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRL------EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..+..++...|++++|...+++++.. .|.....+..++.+|...|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55677788888888888888887643 344456778888888888888888888887755
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.4e-09 Score=102.49 Aligned_cols=223 Identities=5% Similarity=0.048 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhcC---CCCcchHHHHHHHHH
Q 005802 394 ILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCG-NMTYAEIIFQNFI---ERDLVLYNVMIACYA 469 (676)
Q Consensus 394 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 469 (676)
.++.+-..+.+.+..++|..+++.+++.+ |-+...|+....++...| ++++|...++... +.+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 34445455666677788888888877765 455566677776766655 4777777777664 335667777777777
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC----
Q 005802 470 HHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ---- 544 (676)
Q Consensus 470 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---- 544 (676)
+.|++++|++.++++++.. +-+...|..+...+...|++++|...++.+.+. .|+ ...|+.+..++.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchh
Confidence 7778888888877777732 224667777777777777777787777777643 454 6666666666555544
Q ss_pred --HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc--cHHHHHHHHHhc--CChhHHHH
Q 005802 545 --LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA--RYVQLANVYAAE--GNWAEMGR 616 (676)
Q Consensus 545 --~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~ 616 (676)
+++|++.+.++. .+.+...|..+...+... ..+++...++++.++.|.... .+..++.+|... ++.+.+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 466777766655 444566666666555433 356677777777777665433 344555665443 55566666
Q ss_pred HHHHHH
Q 005802 617 IRKQMR 622 (676)
Q Consensus 617 ~~~~~~ 622 (676)
.+++..
T Consensus 279 ~~~ka~ 284 (315)
T d2h6fa1 279 ILNKAL 284 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=5.2e-09 Score=98.40 Aligned_cols=221 Identities=7% Similarity=0.070 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHHhhc-ChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD-ALILVILLGACALQA-ALHPGKEIHAYILRMGVQMDKKLISTLVD 435 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 435 (676)
.|+.+...+.+.+.+++|+.++++++.. .|+ ...|.....++...+ ++++|...++.+.+.. +-+..++..+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l---nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 5666777778888889999999887543 344 445565566666655 5788888888888776 556778888888
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHhhcc-----
Q 005802 436 MYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKP-DAVTFVAILSAFRHC----- 506 (676)
Q Consensus 436 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~----- 506 (676)
.+.+.|++++|...++++. +.+...|..+...+...|++++|++.++++++. .| +...|+.+...+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 8888999999999888876 336778888888888899999999999998884 34 455666555444433
Q ss_pred -CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCcHHHHHHHHHHHHH--hCCHh
Q 005802 507 -GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP----TEEDAVILGSFLNVCRL--NRNAE 578 (676)
Q Consensus 507 -g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~--~~~~~ 578 (676)
+.+++|...+....+. .|+ ...|..+...+...| .+++.+.++... ...++..+..+...|.. .++.+
T Consensus 199 ~~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~ 274 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 274 (315)
T ss_dssp HHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hhhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence 3367888888877643 454 666776666655443 455665555443 22234445555554432 23444
Q ss_pred HHHHHHHHHH
Q 005802 579 LAGEAEEKLL 588 (676)
Q Consensus 579 ~a~~~~~~~~ 588 (676)
.+...++++.
T Consensus 275 ~~~~~~~ka~ 284 (315)
T d2h6fa1 275 NKEDILNKAL 284 (315)
T ss_dssp SHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=2.3e-08 Score=96.31 Aligned_cols=259 Identities=10% Similarity=-0.008 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHHhhcChhHHHHHHHHHHH----cCCCCC---
Q 005802 358 VWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTD----ALILVILLGACALQAALHPGKEIHAYILR----MGVQMD--- 426 (676)
Q Consensus 358 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--- 426 (676)
.+..+...+...|++++|+..|++.+......++ ...+..+...+...+++..+...+..... .+....
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 4555666667777777777777665322211122 12344445556667777777766655443 121211
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C----CcchHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----
Q 005802 427 KKLISTLVDMYSKCGNMTYAEIIFQNFIE----R----DLVLYNVMIACYAHHGHEEKAILLFEEMLEK--GIKPD---- 492 (676)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~---- 492 (676)
...+..+...+...|+++.+...+..... . ....+..+...+...++...+...+.+.... .....
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 12445566778888888888887776531 1 2234555666777889999998888776541 11111
Q ss_pred HhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-cHH
Q 005802 493 AVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE--TDHYACMIDLYGRANQLEKAIEFMKSIP-------TEE-DAV 562 (676)
Q Consensus 493 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~ 562 (676)
...+..+...+...|+++.|...++.........+. ...+..+..++...|++++|.+.++++. ..| ...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 223455566778899999999999987643121111 4456678889999999999999988764 222 334
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC---------CccHHHHHHHHHhcCChhHHHH
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN---------KARYVQLANVYAAEGNWAEMGR 616 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~ 616 (676)
.+..+..++...|++++|...+++++++.+.. ......+...+...++.+++.+
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 67778889999999999999999998874322 1123344455666677777654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.9e-09 Score=98.88 Aligned_cols=90 Identities=14% Similarity=0.132 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcC---CCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHhhc
Q 005802 430 ISTLVDMYSKCGNMTYAEIIFQNFI---ERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD-AVTFVAILSAFRH 505 (676)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~ 505 (676)
+..+..+|.+.|++++|...|++.. +.++.+|+.+..++.+.|++++|++.|++..+. .|+ ..++..+..++..
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHH
Confidence 3334445555555555555555443 223445555555555555555555555555552 232 3344445555555
Q ss_pred cCcHHHHHHHHHHchh
Q 005802 506 CGSVEMGEKYFNSMTA 521 (676)
Q Consensus 506 ~g~~~~a~~~~~~~~~ 521 (676)
.|++++|...++...+
T Consensus 118 ~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh
Confidence 5555555555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=3.8e-08 Score=92.37 Aligned_cols=161 Identities=11% Similarity=0.101 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDL 538 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 538 (676)
.|...+..+...|+.+.|..+|+++++.........|..++..+.+.|+++.|..+|+.+... .|+ ...|...+..
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~---~~~~~~~~~~~a~~ 177 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 344444444444555555555555444211111223444444444445555555555544321 121 2222222222
Q ss_pred -HhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc----cHHHHHHHHHhcCCh
Q 005802 539 -YGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA----RYVQLANVYAAEGNW 611 (676)
Q Consensus 539 -~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~ 611 (676)
+...|+.+.|..+|+.+. .+.++..|..++..+...|+.+.|..+|+++++..|.++. .|...+..-...|+.
T Consensus 178 e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 122344455555554444 2334444445555555555555555555555544443322 333334433444555
Q ss_pred hHHHHHHHHHHh
Q 005802 612 AEMGRIRKQMRG 623 (676)
Q Consensus 612 ~~A~~~~~~~~~ 623 (676)
+.+.++.+++.+
T Consensus 258 ~~~~~~~~r~~~ 269 (308)
T d2onda1 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=8.3e-09 Score=94.45 Aligned_cols=221 Identities=10% Similarity=-0.049 Sum_probs=138.7
Q ss_pred hHHHHHHHHHHHHcCCCCCC--HhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005802 372 CEALFDLLSEFVTKEGVVTD--ALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEII 449 (676)
Q Consensus 372 ~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 449 (676)
.+.++..+++.+......++ ..++..+-..+.+.|++++|...|+...+.. |.++.++..+..+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34455555555333322221 2345555566777788888888887777765 55677888899999999999999999
Q ss_pred HhhcC--CC-CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCC
Q 005802 450 FQNFI--ER-DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKIS 526 (676)
Q Consensus 450 ~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (676)
|+++. .| +..++..+..++...|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+....... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 98876 33 56688888999999999999999999998853 223333333444455556555555555554322 2
Q ss_pred CCHHHHHHHHHHHhhcCCH----HHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH
Q 005802 527 PETDHYACMIDLYGRANQL----EKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY 598 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 598 (676)
+....+. ++..+...... +.+...+.... ..| ...++..++..+...|++++|...++++++.+|++...|
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222222 23333222222 22222221111 112 234666788889999999999999999999999875443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=4.5e-08 Score=91.84 Aligned_cols=188 Identities=10% Similarity=0.072 Sum_probs=149.1
Q ss_pred cChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C-cchHHHHHHHHHHcCChhHHHHHH
Q 005802 406 AALHPGKEIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIE--R-D-LVLYNVMIACYAHHGHEEKAILLF 481 (676)
Q Consensus 406 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~ 481 (676)
+..+.+..+++...+...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888766666777888889999999999999999998753 2 3 336889999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHH-HhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----
Q 005802 482 EEMLEKGIKPDAVTFVAILS-AFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP---- 556 (676)
Q Consensus 482 ~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 556 (676)
+++.+.+. .+...|..... -+...|+.+.|..+|+.+...+ +.+...|..+++.+.+.|+.++|..+|++..
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99988642 23333433332 2345689999999999998652 3347889999999999999999999999875
Q ss_pred CCCc--HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 557 TEED--AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 557 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
.+|+ ...|...+..-...|+.+.+..+++++.+..|....
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 2232 347888888888999999999999999999887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=1.2e-09 Score=104.47 Aligned_cols=229 Identities=5% Similarity=-0.120 Sum_probs=156.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhc--ChhHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhcCCHHH
Q 005802 369 AQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQA--ALHPGKEIHAYILRMGVQMDKKL-ISTLVDMYSKCGNMTY 445 (676)
Q Consensus 369 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~ 445 (676)
.|++++|+..++..+.. .+-+...+..+..++...+ +.+++...+..+.+... .+... +......+...+.++.
T Consensus 86 ~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 86 AALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHH
Confidence 34567777777776332 2334444555555555444 46777777877777653 33333 3445567777899999
Q ss_pred HHHHHhhcCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhh
Q 005802 446 AEIIFQNFIER---DLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTAD 522 (676)
Q Consensus 446 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 522 (676)
|...++...+. +...|+.+...+.+.|++++|...+.+..+. .|+.. .+...+...+..+++...+......
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh
Confidence 99999988743 5567888888889999888876665544431 22211 1222334445556677777666542
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 523 YKISPETDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 523 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
-+++...+..++..+...|+.++|.+.+.+.. ..| +..++..++.++...|++++|+..++++++++|.++..|..
T Consensus 238 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~ 315 (334)
T d1dcea1 238 --RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 315 (334)
T ss_dssp --CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred --CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHH
Confidence 23335566677788888899999999998877 333 55677888889999999999999999999999998888888
Q ss_pred HHHHHHh
Q 005802 601 LANVYAA 607 (676)
Q Consensus 601 l~~~~~~ 607 (676)
|+..+.-
T Consensus 316 L~~~~~~ 322 (334)
T d1dcea1 316 LRSKFLL 322 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 8777764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2.7e-08 Score=77.51 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=72.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChh
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWA 612 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 612 (676)
-...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..++++++++|+++..|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 4566777888888888888776 55577778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC
Q 005802 613 EMGRIRKQMRGM 624 (676)
Q Consensus 613 ~A~~~~~~~~~~ 624 (676)
+|+..+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888887754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=1.3e-09 Score=104.24 Aligned_cols=246 Identities=7% Similarity=-0.050 Sum_probs=171.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhH-HHH---HHH-------HHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005802 370 QNCEALFDLLSEFVTKEGVVTDALI-LVI---LLG-------ACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYS 438 (676)
Q Consensus 370 ~~~~~a~~~~~~m~~~~~~~p~~~~-~~~---ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (676)
+..++|+.++++.+.. .|+..+ |+. ++. .+...+.+++|..+++.+.+.. +.+...+..+..++.
T Consensus 43 ~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 43 ELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp CCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 3347788888776432 344333 211 111 1233455677888888887765 556666666666666
Q ss_pred hcC--CHHHHHHHHhhcC---CCCcchHHH-HHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHH
Q 005802 439 KCG--NMTYAEIIFQNFI---ERDLVLYNV-MIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMG 512 (676)
Q Consensus 439 ~~g--~~~~A~~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 512 (676)
..+ ++++|...++.+. .++...+.. ....+...+.+++|+..+++.+... +-+...|..+...+...|++++|
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHH
Confidence 655 4788888888775 234445543 3456667888999999998888753 22466777788888888888877
Q ss_pred HHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcc
Q 005802 513 EKYFNSMTADYKISPETDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRL 590 (676)
Q Consensus 513 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 590 (676)
...++..... .|+ ...+...+...+..+++...+.+.. .+++...+..++..+...++.++|...+.++.+.
T Consensus 198 ~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666555432 222 1223344555667777777776654 4455666677777888889999999999999999
Q ss_pred cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 591 EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 591 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
+|.+...+..++.+|...|++++|.+.++++.+..+
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999999987533
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=1.9e-08 Score=87.92 Aligned_cols=120 Identities=8% Similarity=-0.067 Sum_probs=81.2
Q ss_pred CCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCcHHHHHHH
Q 005802 491 PDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-T-EEDAVILGSF 567 (676)
Q Consensus 491 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l 567 (676)
|+...+......+.+.|++++|+..|++.... .|+ ...|..+..+|.+.|++++|+..++++. . +.+...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 56666666677777777777777777776643 344 6667777777777777777777777776 3 3356667777
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhH
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAE 613 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 613 (676)
+.++...|++++|+..+++++++.|++...+...+..+...++...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 124 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhH
Confidence 7777777777777777777777777666555555555554444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=4.6e-08 Score=76.19 Aligned_cols=105 Identities=16% Similarity=0.049 Sum_probs=91.3
Q ss_pred HHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC
Q 005802 499 ILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR 575 (676)
Q Consensus 499 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 575 (676)
-...+...|++++|...|+...+. .|+ ...|..+..+|.+.|++++|+..+.++. .+.++..|..++.++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 355677889999999999998854 455 7889999999999999999999999887 6678889999999999999
Q ss_pred CHhHHHHHHHHHHcccCCCCccHHHHHHHHH
Q 005802 576 NAELAGEAEEKLLRLEGNNKARYVQLANVYA 606 (676)
Q Consensus 576 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 606 (676)
++++|+..++++++.+|+++.++..+..+-.
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999988888776643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.2e-07 Score=79.68 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=61.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC
Q 005802 466 ACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ 544 (676)
Q Consensus 466 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 544 (676)
..+...|+++.|++.|+++ ..|+..+|..+..++...|++++|...|++..+. .|+ ...|..+..++.+.|+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhcc
Confidence 3344555566665555442 2344455555555555556666666555555532 344 5555555555555555
Q ss_pred HHHHHHHHHhCC--CCCc----------------HHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCC
Q 005802 545 LEKAIEFMKSIP--TEED----------------AVILGSFLNVCRLNRNAELAGEAEEKLLRLEGN 593 (676)
Q Consensus 545 ~~~A~~~~~~~~--~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 593 (676)
+++|++.|++.. .+++ ..++..+..++...|++++|.+.++++.++.|.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 555555555443 1110 122334444555555555555555555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.4e-07 Score=78.40 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=75.1
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH
Q 005802 496 FVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCR 572 (676)
Q Consensus 496 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 572 (676)
+......|.+.|++++|...|++..+. .|+ ...|..+..+|...|++++|+..|+++. .+.+...|..++.++.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 334445566777777777777777643 344 6666677777777777777777777665 4445566777777777
Q ss_pred HhCCHhHHHHHHHHHHcccCCCCccHHHHHHHH--HhcCChhHHHH
Q 005802 573 LNRNAELAGEAEEKLLRLEGNNKARYVQLANVY--AAEGNWAEMGR 616 (676)
Q Consensus 573 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~ 616 (676)
..|++++|...+++++++.|+++..+..+..+. ...+.+++|..
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777766666655443 22333444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.66 E-value=3.6e-08 Score=76.03 Aligned_cols=89 Identities=16% Similarity=-0.099 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCCh
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNW 611 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 611 (676)
.+...+.+.|++++|+..+++.. .+.++..|..++.++...|++++|+..++++++++|+++..+..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 45777889999999999999987 4557889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 005802 612 AEMGRIRKQMR 622 (676)
Q Consensus 612 ~~A~~~~~~~~ 622 (676)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.1e-07 Score=78.89 Aligned_cols=103 Identities=10% Similarity=0.034 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLY 539 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 539 (676)
+......|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...|++..+. .|+ ...|..++.++
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHH
Confidence 4445566778888888888888887743 224566777777788888888888888877643 455 67777788888
Q ss_pred hhcCCHHHHHHHHHhCC-CCC-cHHHHHHH
Q 005802 540 GRANQLEKAIEFMKSIP-TEE-DAVILGSF 567 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l 567 (676)
...|++++|.+.+++.. ..| ++..+..+
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l 118 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKY 118 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 88888888888887776 333 44444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=8.1e-08 Score=83.70 Aligned_cols=97 Identities=6% Similarity=-0.078 Sum_probs=75.1
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHH
Q 005802 456 RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYAC 534 (676)
Q Consensus 456 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 534 (676)
|+...+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|...|+... .+.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 444455666778888888888888888887743 2346677778888888888888888888886 55676 777888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC
Q 005802 535 MIDLYGRANQLEKAIEFMKSIP 556 (676)
Q Consensus 535 l~~~~~~~g~~~~A~~~~~~~~ 556 (676)
+..+|.+.|++++|+..|+++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888888888888765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.1e-07 Score=74.06 Aligned_cols=105 Identities=15% Similarity=-0.008 Sum_probs=65.3
Q ss_pred HHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCC---HHHHHHHHHhCC-CCCcH---HHHHHHH
Q 005802 497 VAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQ---LEKAIEFMKSIP-TEEDA---VILGSFL 568 (676)
Q Consensus 497 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~~~---~~~~~l~ 568 (676)
..+++.+...+++++|.+.|+..... .|+ +.++..+..++.+.++ .++|+++++++. ..|++ .+|..++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~---~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA---GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 34566666677777777777777643 343 6666667777765443 345777777665 23322 2455666
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHH
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANV 604 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 604 (676)
.+|...|++++|+..++++++++|++......+..+
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 677777777777777777777777766555444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=3.8e-07 Score=78.13 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=81.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHH
Q 005802 536 IDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMG 615 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 615 (676)
...+...|++++|++.|.++. +|++.+|..++.++...|++++|+..|+++++++|+++..|..++.+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 566788999999999999875 7788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 005802 616 RIRKQMRGM 624 (676)
Q Consensus 616 ~~~~~~~~~ 624 (676)
+.+++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=1.7e-06 Score=79.83 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=126.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----cchHHHHHHHHHHcCChhHHHHHHHHHHH----CCCC-CCHhHHH
Q 005802 432 TLVDMYSKCGNMTYAEIIFQNFIE-----RD----LVLYNVMIACYAHHGHEEKAILLFEEMLE----KGIK-PDAVTFV 497 (676)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~-p~~~~~~ 497 (676)
.....|...|++++|.+.|.+... .+ ..+|..+..+|.+.|++++|.+.+++..+ .|-. ....++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345567777888888777776531 11 24678888889999999999999887665 2111 1134555
Q ss_pred HHHHHhh-ccCcHHHHHHHHHHchhhc---CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-c-------HHH
Q 005802 498 AILSAFR-HCGSVEMGEKYFNSMTADY---KISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-D-------AVI 563 (676)
Q Consensus 498 ~ll~~~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~-------~~~ 563 (676)
.+...|. ..|++++|.+.+++...-. +..+. ..++..++..+.+.|++++|++.++++. ..+ + ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 4699999999998875321 22222 4567888999999999999999998865 211 1 123
Q ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc-----HHHHHHHHHh--cCChhHHHHHHHHH
Q 005802 564 LGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR-----YVQLANVYAA--EGNWAEMGRIRKQM 621 (676)
Q Consensus 564 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~~ 621 (676)
+...+..+...++++.|...++++.+.+|..+.. ...|+.++.. .+++++|+..++.+
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445556778899999999999999998764332 3455555554 34578888877643
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.4e-07 Score=72.08 Aligned_cols=93 Identities=10% Similarity=-0.055 Sum_probs=51.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC---CHhHHHHHHHHHHcccCCC--CccHHHHHHHHH
Q 005802 534 CMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR---NAELAGEAEEKLLRLEGNN--KARYVQLANVYA 606 (676)
Q Consensus 534 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~ 606 (676)
.++..+...+++++|.+.|++.. .+.++.++..+..++.+.+ ++++|+.+++++++.+|.+ ..++..||.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 34555555666666666666555 3445555555655555433 3344666666666554433 234556666666
Q ss_pred hcCChhHHHHHHHHHHhCCC
Q 005802 607 AEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 607 ~~g~~~~A~~~~~~~~~~~~ 626 (676)
+.|++++|++.++++.+..+
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhHHHHHHHHHHHHhCc
Confidence 66666666666666655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=9.3e-07 Score=73.92 Aligned_cols=59 Identities=14% Similarity=-0.008 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 565 GSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 565 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...+++..+
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=1.1e-06 Score=73.35 Aligned_cols=86 Identities=20% Similarity=0.014 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+|..+..+|.+.|++++|+..+++.. .|.++..+..++.++...|++++|+..++++++++|+++.+...+..+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 457778899999999999999999888 555888999999999999999999999999999999999999999988877
Q ss_pred cCChhHHH
Q 005802 608 EGNWAEMG 615 (676)
Q Consensus 608 ~g~~~~A~ 615 (676)
.+...+..
T Consensus 143 ~~~~~~~e 150 (170)
T d1p5qa1 143 IRRQLARE 150 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.42 E-value=1.6e-06 Score=71.00 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCcccCceeEEEEcCEE
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGNRFAGCSWVYVEHEI 641 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (676)
.++..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|+..++...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 356678888999999999999999999999999999999999999999999999999988754
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 005802 642 HIFTVGDVSHPKTNAIYSVLAIFTGELYE 670 (676)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (676)
+|...++...+..+..++++
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHH
Confidence 46666667777777777665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=1.3e-06 Score=73.13 Aligned_cols=65 Identities=8% Similarity=-0.064 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 560 DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
....+..+..++.+.|++++|+..++++++++|+++..|..+|.+|...|++++|+..++++.+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44466777888899999999999999999999999999999999999999999999999988864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=3.7e-06 Score=77.58 Aligned_cols=174 Identities=11% Similarity=0.073 Sum_probs=129.8
Q ss_pred CHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HhHHHHHHHHhhccCcHHHHHHHH
Q 005802 442 NMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEK----GIKPD-AVTFVAILSAFRHCGSVEMGEKYF 516 (676)
Q Consensus 442 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 516 (676)
++++|..+|. .....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|...+
T Consensus 32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 4566666544 4577889999999999999988762 21222 357888899999999999999999
Q ss_pred HHchhhcCCCCC----HHHHHHHHHHHhh-cCCHHHHHHHHHhCC----CCC----cHHHHHHHHHHHHHhCCHhHHHHH
Q 005802 517 NSMTADYKISPE----TDHYACMIDLYGR-ANQLEKAIEFMKSIP----TEE----DAVILGSFLNVCRLNRNAELAGEA 583 (676)
Q Consensus 517 ~~~~~~~~~~p~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 583 (676)
+....-+.-..+ ..++..+...|.. .|++++|++.++++. ... ...++..++..+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 976543211112 4556667777754 699999999998775 111 233577788899999999999999
Q ss_pred HHHHHcccCCCCcc-------HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005802 584 EEKLLRLEGNNKAR-------YVQLANVYAAEGNWAEMGRIRKQMRGMKG 626 (676)
Q Consensus 584 ~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 626 (676)
++++....|.++.. +...+.++...|+++.|...+++..+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 99999997776533 45667788889999999999998877644
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.2e-06 Score=69.05 Aligned_cols=93 Identities=11% Similarity=0.118 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccH-------HHH
Q 005802 531 HYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARY-------VQL 601 (676)
Q Consensus 531 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-------~~l 601 (676)
.+..+...+.+.|++++|++.|++.. .+.+...+..+..+|...|++++|+..++++++++|.++..+ ..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34567788899999999999998887 566788899999999999999999999999999988877654 455
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 005802 602 ANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 602 ~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+.++...+++++|++.+++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 6667778899999999987754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.25 E-value=7e-06 Score=68.26 Aligned_cols=94 Identities=19% Similarity=0.072 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+|..+..+|.+.|++++|+..++++. .+.+...+...+.++...|++++|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456678888999999999999999887 667888999999999999999999999999999999999999999888877
Q ss_pred cCChhH-HHHHHHHHHh
Q 005802 608 EGNWAE-MGRIRKQMRG 623 (676)
Q Consensus 608 ~g~~~~-A~~~~~~~~~ 623 (676)
.+...+ ..+.+..|-+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 665543 4455555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.23 E-value=1e-05 Score=67.23 Aligned_cols=62 Identities=11% Similarity=0.002 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 563 ILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 563 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
.+..+..+|...|++++|+..++++++++|.+...|..++.+|...|++++|...++++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45567778899999999999999999999999999999999999999999999999998865
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=0.0022 Score=58.67 Aligned_cols=123 Identities=12% Similarity=0.041 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGKEIHAYILRMGVQMDKKLISTLVDMYS 438 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (676)
|..++-.|.+.|+++.|+.+.-+ . .++.......+..+.+..+++....+.....+. ++...+.++....
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~i~---~---~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~ 246 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITMMN---H---PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLS 246 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH---S---TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHG
T ss_pred hHHHHHHHHhcCCHHHHHHHHHH---c---chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhc
Confidence 44455555666666666655533 1 222223333444445555555444444433332 1222333333333
Q ss_pred hcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHH
Q 005802 439 KCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMG 512 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 512 (676)
..-+..+.. ..+.+.++.......++...+.| +....+++...|...++++.-
T Consensus 247 ~~~d~~r~V------------------~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l 299 (336)
T d1b89a_ 247 PRLDHTRAV------------------NYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQAL 299 (336)
T ss_dssp GGCCHHHHH------------------HHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHH------------------HHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHH
Confidence 333333322 23334445555555555544433 234555555666666655443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.19 E-value=0.00019 Score=64.61 Aligned_cols=180 Identities=13% Similarity=0.046 Sum_probs=114.9
Q ss_pred CHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHH-HHHHHhhccCcHHHHHHH
Q 005802 442 NMTYAEIIFQNFIER-DLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFV-AILSAFRHCGSVEMGEKY 515 (676)
Q Consensus 442 ~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~ 515 (676)
+...|...+.....+ +......+...+.. .++.+.|...+++....|..+....+. ..............+...
T Consensus 53 d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~ 132 (265)
T d1ouva_ 53 NLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEY 132 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred hHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHH
Confidence 444444444443322 23333333333332 456778888888887766322211111 111112234567777777
Q ss_pred HHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHH
Q 005802 516 FNSMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKL 587 (676)
Q Consensus 516 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 587 (676)
+...... .+...+..|...+.. ..+...+..+++......++.....+...+.. .++++.|+..|+++
T Consensus 133 ~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~a 208 (265)
T d1ouva_ 133 FTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 208 (265)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhh
Confidence 7766432 456667777777765 45677788887776655677777777776665 56899999999999
Q ss_pred HcccCCCCccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCc
Q 005802 588 LRLEGNNKARYVQLANVYAA----EGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 588 ~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 627 (676)
.+.. ++..+..|+.+|.. ..++++|.+.+++.-+.|..
T Consensus 209 a~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 209 CELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8774 56788899999986 44899999999998877653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.17 E-value=5.7e-06 Score=67.54 Aligned_cols=127 Identities=13% Similarity=-0.028 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHH
Q 005802 460 LYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLY 539 (676)
Q Consensus 460 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 539 (676)
.+......+.+.|++.+|+..|.+.+.. .|... ............. ....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 3445566777788888888888777652 11100 0000000000000 1234677889999
Q ss_pred hhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh
Q 005802 540 GRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA 607 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 607 (676)
.+.|++++|++.++++. .+.+..+|..++.++...|++++|+..++++++++|+++.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999987 566888999999999999999999999999999999999888777666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=4.3e-06 Score=69.77 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHH
Q 005802 461 YNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLY 539 (676)
Q Consensus 461 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 539 (676)
+......+...|++.+|++.|.+.++. ........... +.. .+.|. ...|..+..++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~------~~~----~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDA------DGA----KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHH------HHG----GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhH------HHH----HhChhhHHHHHHHHHHH
Confidence 444556667778888888877776531 00000000000 000 11233 66788889999
Q ss_pred hhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHH
Q 005802 540 GRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEM 614 (676)
Q Consensus 540 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 614 (676)
.+.|++++|+..++++. .+.++..|..++.++...|++++|+..++++++++|+++.+...|..+........++
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 4557889999999999999999999999999999999999888888887665554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.5e-07 Score=92.77 Aligned_cols=116 Identities=11% Similarity=-0.013 Sum_probs=54.0
Q ss_pred CcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHH
Q 005802 507 GSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEE 585 (676)
Q Consensus 507 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 585 (676)
+.++.|+..+.... ++.|+ ...+..+...+.+.|+.++|...+++.........+..++..+...|++++|+..|+
T Consensus 100 ~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 100 GFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHHTC----------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44444544444332 44444 555666666666777777766655544311112355566667777777777777777
Q ss_pred HHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 586 KLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 586 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
++.+++|+++..|..||.+|...|+..+|...+.+.....
T Consensus 177 ~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7777777777777777777777777777777776666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.00 E-value=1.8e-05 Score=60.39 Aligned_cols=83 Identities=11% Similarity=0.076 Sum_probs=39.2
Q ss_pred HhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhCCHh
Q 005802 502 AFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 502 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
.+.+.|++++|...|++.... .|+ ...|..+..++.+.|++++|+..++++. .+.+...|..+..+|...|+++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 344445555555555544432 232 4444444455555555555555554444 3334444444555555555555
Q ss_pred HHHHHHHHH
Q 005802 579 LAGEAEEKL 587 (676)
Q Consensus 579 ~a~~~~~~~ 587 (676)
+|++.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.0045 Score=56.53 Aligned_cols=137 Identities=13% Similarity=0.048 Sum_probs=73.5
Q ss_pred CCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHH
Q 005802 122 RMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAA 201 (676)
Q Consensus 122 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 201 (676)
.||..-...+...|.+.|.++.|..++..+ .-|..++..+.+.+++..|.+.+.+. .+..+|..+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~---~~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH---TCHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHc---CCHHHHHHHHHH
Confidence 345555566666777777777777777642 33566777777777777777776653 355677777777
Q ss_pred HHhcCChhHHHHHHhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCC
Q 005802 202 CCREGEMEMALKTFWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLR 273 (676)
Q Consensus 202 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 273 (676)
+.......-|.-. ......+......++..|-..|.+++.+.+++..... -.++...++.++..+++.+
T Consensus 79 l~~~~e~~la~i~--~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 79 CVDGKEFRLAQMC--GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHTTCHHHHHHT--TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHhCcHHHHHHHH--HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 7766655443221 1111223344456777777778888877777766532 2345556666777776643
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=7e-06 Score=66.11 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCC--CCCcHHHHHHHHHHHHHhC-----------CHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCCh
Q 005802 545 LEKAIEFMKSIP--TEEDAVILGSFLNVCRLNR-----------NAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNW 611 (676)
Q Consensus 545 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 611 (676)
+++|++.|+++. .|.+..+|..++.+|...| ++++|...|+++++++|++...+..|+...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~------ 130 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA------ 130 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH------
Confidence 345555555554 3345555555555554433 468899999999999999887766666553
Q ss_pred hHHHHHHHHHHhCCC
Q 005802 612 AEMGRIRKQMRGMKG 626 (676)
Q Consensus 612 ~~A~~~~~~~~~~~~ 626 (676)
+|.+++.+..+.|+
T Consensus 131 -ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 -KAPQLHAEAYKQGL 144 (145)
T ss_dssp -THHHHHHHHHHSSS
T ss_pred -HHHHHHHHHHHHhc
Confidence 55566666655554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=3.7e-05 Score=56.36 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----C----CC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHH
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP----T----EE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQ 600 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 600 (676)
..+-.+...+.+.|++++|+..|+++. . .+ ...++..+..++.+.|++++|+..++++++++|+++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 334466777788888888888777664 1 11 24578889999999999999999999999999999888877
Q ss_pred HHHH
Q 005802 601 LANV 604 (676)
Q Consensus 601 l~~~ 604 (676)
+...
T Consensus 86 l~~~ 89 (95)
T d1tjca_ 86 LKYF 89 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=7.2e-05 Score=62.27 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=77.4
Q ss_pred HHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCH--HHHHHHHHhCCCCCcHHHHHHHHHHHHHhCCHh
Q 005802 501 SAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQL--EKAIEFMKSIPTEEDAVILGSFLNVCRLNRNAE 578 (676)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 578 (676)
......|++++|.+.|.....-+ +.... ..+ ..+.+ .++.. ++ +.....+..+..++...|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~---rG~~l-----~~~-~~~~w~~~~r~~-l~----~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREW---RGPVL-----DDL-RDFQFVEPFATA-LV----EDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC---CSSTT-----GGG-TTSTTHHHHHHH-HH----HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC---ccccc-----ccC-cchHHHHHHHHH-HH----HHHHHHHHHHHHHHHHCCCch
Confidence 45667788888888888776432 22100 000 00110 01111 11 112346777888999999999
Q ss_pred HHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 579 LAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 579 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
+|+..++++++.+|.+...|..|+.+|.+.|++++|++.|+++.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999854
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.75 E-value=0.01 Score=52.66 Aligned_cols=220 Identities=11% Similarity=-0.020 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHh----hcChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 005802 359 WTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACAL----QAALHPGKEIHAYILRMGVQMDKKLISTLV 434 (676)
Q Consensus 359 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 434 (676)
+..|...+.+.+++.+|++.|++. ...| +...+..|-..+.. ..+...+...+....+.+ ++.....+.
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kA-a~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKA-CDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 333444444455555555555554 3322 22222223223322 334445555555544443 122222222
Q ss_pred HHHHh----cCCHHHHHHHHhhcCCC-CcchHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhc
Q 005802 435 DMYSK----CGNMTYAEIIFQNFIER-DLVLYNVMIACYAH----HGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRH 505 (676)
Q Consensus 435 ~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 505 (676)
..+.. ..+.+.|...++...+. .......+...+.. ......+...+...... .+...+..|...+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhcc
Confidence 22221 34455566655554322 22222333333332 33456666666666553 344555555555543
Q ss_pred ----cCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----
Q 005802 506 ----CGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEKAIEFMKSIPTEEDAVILGSFLNVCRL---- 573 (676)
Q Consensus 506 ----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---- 573 (676)
..+...+..+++...+. .+......|...|.. ..+.++|+.+|++.....++..+..|...|..
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~ 230 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV 230 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred CCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCC
Confidence 45677777777776543 245555556666654 56888898888887745566677777776654
Q ss_pred hCCHhHHHHHHHHHHcccC
Q 005802 574 NRNAELAGEAEEKLLRLEG 592 (676)
Q Consensus 574 ~~~~~~a~~~~~~~~~~~p 592 (676)
.++.++|...++++.+..+
T Consensus 231 ~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 231 TRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp SCCSTTHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHCcC
Confidence 3478888888888876644
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.74 E-value=9.1e-06 Score=65.41 Aligned_cols=86 Identities=14% Similarity=0.003 Sum_probs=61.9
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHH----------hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhc
Q 005802 541 RANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRL----------NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAE 608 (676)
Q Consensus 541 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 608 (676)
+.+.+++|++.++... .|.++..+..++.++.. .+.+++|+..++++++++|+++.+|..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 3444556666665554 34455555555555442 34568999999999999999999999999999886
Q ss_pred CC-----------hhHHHHHHHHHHhCCC
Q 005802 609 GN-----------WAEMGRIRKQMRGMKG 626 (676)
Q Consensus 609 g~-----------~~~A~~~~~~~~~~~~ 626 (676)
|+ +++|.+.+++..+..+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 54 6888888888876544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=0.00012 Score=53.40 Aligned_cols=64 Identities=11% Similarity=-0.049 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-------CccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005802 562 VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN-------KARYVQLANVYAAEGNWAEMGRIRKQMRGMK 625 (676)
Q Consensus 562 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 625 (676)
...-.++..+.+.|+++.|+..++++++..|.+ +.++..|+.+|.+.|++++|++.++++.+..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 344567889999999999999999999886554 3458889999999999999999999998753
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.65 E-value=7.6e-05 Score=60.85 Aligned_cols=89 Identities=17% Similarity=-0.003 Sum_probs=63.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCC----CCC----------cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCC-------
Q 005802 536 IDLYGRANQLEKAIEFMKSIP----TEE----------DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNN------- 594 (676)
Q Consensus 536 ~~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------- 594 (676)
...+.+.|++++|+..|++.. ..| ....|..+..+|...|++++|...+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 344555666666666666654 111 13466777788888888888888888888764321
Q ss_pred ----CccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005802 595 ----KARYVQLANVYAAEGNWAEMGRIRKQMRGM 624 (676)
Q Consensus 595 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 624 (676)
...+..++.+|...|++++|.+.+++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 225788999999999999999999998764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.57 E-value=6.2e-05 Score=67.10 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=86.8
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHH
Q 005802 469 AHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 469 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 547 (676)
.+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45688899999998888853 335677888888889999999999999888743 566 5555556666555555555
Q ss_pred HHHHHHhCC--CCC-cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHH
Q 005802 548 AIEFMKSIP--TEE-DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYV 599 (676)
Q Consensus 548 A~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 599 (676)
+..-..... .+| +...+......+...|+.++|...++++.+..|..+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 443332221 222 2233344455677889999999999999888888766544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00031 Score=54.73 Aligned_cols=54 Identities=6% Similarity=-0.010 Sum_probs=24.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHc
Q 005802 465 IACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSM 519 (676)
Q Consensus 465 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 519 (676)
...+.+.|++++|++.|++.++.+ +.+...+..+..+|.+.|++++|...++++
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence 344444444555555444444421 112334444444444444444444444444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.056 Score=52.07 Aligned_cols=262 Identities=8% Similarity=0.007 Sum_probs=110.7
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHHhhcChhHHH
Q 005802 333 VGYSLQGNMEEARRHFDSLTEKNVVVWTALFSGYVKAQNCEALFDLLSEFVTKEGVVTDALILVILLGACALQAALHPGK 412 (676)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 412 (676)
..+.+.+++......+..-+ .+...-.....+....|+.+.|...+..........|+. +.
T Consensus 80 ~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~------------------c~ 140 (450)
T d1qsaa1 80 NELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA------------------CD 140 (450)
T ss_dssp HHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH------------------HH
T ss_pred HHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH------------------HH
Confidence 34455556655555554321 123333445566677777777777777663333333432 22
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005802 413 EIHAYILRMGVQMDKKLISTLVDMYSKCGNMTYAEIIFQNFIERDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPD 492 (676)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 492 (676)
.++....+.| ..+...+-.-+......|+...|..+...+...........+..... ...+.... .. ..++
T Consensus 141 ~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~---~~--~~~~ 211 (450)
T d1qsaa1 141 KLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFA---RT--TGAT 211 (450)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHH---HH--SCCC
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHH---hc--CCCC
Confidence 2333333333 23333333344445555666666666655543333233333322221 11111111 11 1122
Q ss_pred HhHHHHHHHHhhc--cCcHHHHHHHHHHchhhcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCcHHHHHHH
Q 005802 493 AVTFVAILSAFRH--CGSVEMGEKYFNSMTADYKISPET--DHYACMIDLYGRANQLEKAIEFMKSIP-TEEDAVILGSF 567 (676)
Q Consensus 493 ~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 567 (676)
......+..++.+ ..+.+.|..++..........++. .....+...+...+..+.+..++.... ...+.....-.
T Consensus 212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~ 291 (450)
T d1qsaa1 212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERR 291 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHH
Confidence 2222222222221 234555555555554432222221 111112222223344455554444433 22222222223
Q ss_pred HHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005802 568 LNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMR 622 (676)
Q Consensus 568 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 622 (676)
+......+++..+...+..+-......+....-++.++...|+.++|...+..+-
T Consensus 292 ~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 3333444555555555554432222223344555566666666666666655543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.34 E-value=6.1e-05 Score=67.14 Aligned_cols=122 Identities=10% Similarity=0.084 Sum_probs=87.8
Q ss_pred hhccCcHHHHHHHHHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHhCCHhH
Q 005802 503 FRHCGSVEMGEKYFNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP-TEE-DAVILGSFLNVCRLNRNAEL 579 (676)
Q Consensus 503 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 579 (676)
..+.|++++|+..+++..+. .|+ ...+..++..|+..|++++|.+.++... ..| +...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 35679999999999999853 565 8999999999999999999999999987 444 45555555555554444444
Q ss_pred HHHHHHHHHcc-cCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 580 AGEAEEKLLRL-EGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 580 a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
+.......... .|++...+...+.++...|++++|.+.++.+.+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 33322222111 3434445566678899999999999999998876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.21 E-value=0.00097 Score=53.94 Aligned_cols=67 Identities=9% Similarity=-0.090 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-----cHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCc
Q 005802 530 DHYACMIDLYGRANQLEKAIEFMKSIP--------TEE-----DAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKA 596 (676)
Q Consensus 530 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 596 (676)
..|+.+..+|.+.|++++|++.+++.. ..+ ....+..+..+|...|++++|+..|++++++.|....
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 456666777777777777776666543 111 1224566778899999999999999999988665433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.99 E-value=0.0053 Score=50.54 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchh----hcCCCCCHHHH
Q 005802 459 VLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTA----DYKISPETDHY 532 (676)
Q Consensus 459 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 532 (676)
..+..+...+...|++++|+..++++.... +-+...|..++.+|...|+.++|++.|+++.. ..|+.|...+-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 456778888899999999999999998843 33677899999999999999999999888733 35888886653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0007 Score=67.04 Aligned_cols=130 Identities=9% Similarity=-0.037 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHhhcCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHH
Q 005802 439 KCGNMTYAEIIFQNFIE---RDLVLYNVMIACYAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKY 515 (676)
Q Consensus 439 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 515 (676)
..+.++.|...+..... ++...+..+...+.+.|+.+.|...+.+.... .| ..++..+...+...|++++|...
T Consensus 98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 34556666666655432 34456666777777777887777776665431 11 24566677777777888888888
Q ss_pred HHHchhhcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHh
Q 005802 516 FNSMTADYKISPE-TDHYACMIDLYGRANQLEKAIEFMKSIP--TEEDAVILGSFLNVCRLN 574 (676)
Q Consensus 516 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 574 (676)
|++... +.|+ ...|+.|...+...|+..+|+..|.+.. .+|.+.++..|...+.+.
T Consensus 175 y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 175 YRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 887764 3566 6778888888888888888888877766 566777777777666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.81 E-value=0.0032 Score=46.98 Aligned_cols=64 Identities=6% Similarity=-0.068 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHhC---CHhHHHHHHHHHHcccCCCC-ccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005802 560 DAVILGSFLNVCRLNR---NAELAGEAEEKLLRLEGNNK-ARYVQLANVYAAEGNWAEMGRIRKQMRG 623 (676)
Q Consensus 560 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 623 (676)
...+.-.+.+++.++. +.++|+.+++++.+.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444445555555443 34566666666666666543 4556667777777777777777776664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.42 E-value=0.098 Score=38.21 Aligned_cols=141 Identities=8% Similarity=0.089 Sum_probs=98.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhhcCCHHH
Q 005802 468 YAHHGHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGRANQLEK 547 (676)
Q Consensus 468 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 547 (676)
+.-.|..++..+++.+.... .+..-|+-++--....-+-+-..+.++..-+-+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 45568888888888887763 2444555555555555666667777777644333332 333333
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 005802 548 AIEFMKSIPTEEDAVILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQMRGMKGN 627 (676)
Q Consensus 548 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 627 (676)
...-+-.+ ..+...++..+.....+|.-++-..+++.+.+-...+|.....++.+|.+.|...++.++++++-+.|.+
T Consensus 75 vv~C~~~~--n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33333333 2344555666777889999999999999988877778899999999999999999999999999999885
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.83 Score=43.39 Aligned_cols=51 Identities=14% Similarity=-0.008 Sum_probs=36.1
Q ss_pred HHHHHhCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHhcCChhHHHHHHHHH
Q 005802 569 NVCRLNRNAELAGEAEEKLLRLEGNNKARYVQLANVYAAEGNWAEMGRIRKQM 621 (676)
Q Consensus 569 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 621 (676)
..+...|....|...+..+.... ++.-...++....+.|.++.|+......
T Consensus 389 ~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 389 RELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 35567788888888777776443 3456667778888888888888776654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.67 E-value=0.043 Score=42.23 Aligned_cols=81 Identities=10% Similarity=-0.004 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHcccCCCCccHHHHHHHHHh----cCChhHHH
Q 005802 544 QLEKAIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLEGNNKARYVQLANVYAA----EGNWAEMG 615 (676)
Q Consensus 544 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 615 (676)
+.++|++++++.....++.....+...|.. ..|.++|...++++.+. .++.....|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHH
Confidence 344444444443322333333333333332 34566777777776654 334566677777665 35677777
Q ss_pred HHHHHHHhCCC
Q 005802 616 RIRKQMRGMKG 626 (676)
Q Consensus 616 ~~~~~~~~~~~ 626 (676)
+++++.-+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 77777766554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.50 E-value=0.11 Score=38.01 Aligned_cols=141 Identities=9% Similarity=-0.050 Sum_probs=90.4
Q ss_pred HHccCCcHHHHHHHHHHHHhcCCCCCchhhHHHHHhhhccchHHHHHhhhhcCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 005802 135 CVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLIDMYSKCRCYEEACRVFEGCTEEVNLISKNAMVAACCREGEMEMALKT 214 (676)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 214 (676)
+.-.|.++++.+++....+.. +..-|+=+|.-....-+-+...+.++.+.+-.|. ..++++......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl----------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCc----------hhhhcHHHHHHH
Confidence 344567777777777766651 1223555555555555555566666555442111 123344444444
Q ss_pred HhhCCCCCCeeeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHhHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 005802 215 FWRQPELNDAVSWNTLISGYVQNGDAEEGLKLFVRMGENGVRWNEHTFASALSACCGLRNVKCAKEIHSWVLKNGLI 291 (676)
Q Consensus 215 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 291 (676)
+-.+. .+....+..++.+.++|+-+.-.++++.+.+ +-+|++.....+..+|.+.|+..++.+++.++.+.|++
T Consensus 79 ~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 79 GVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 43333 3445567778888889998888888888776 44577788888888999999999999999998888863
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.12 Score=38.19 Aligned_cols=71 Identities=14% Similarity=0.020 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHhhcC---CHHHHHHHHHhCC-CCC-cH-HHHHHHHHHHHHhCCHhHHHHHHHHHHcccCCCCcc
Q 005802 527 PETDHYACMIDLYGRAN---QLEKAIEFMKSIP-TEE-DA-VILGSFLNVCRLNRNAELAGEAEEKLLRLEGNNKAR 597 (676)
Q Consensus 527 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 597 (676)
|+..+--.+..++.+.. +.++++.++++.. ..| +. ..+-.+.-+|.+.|++++|...++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 45556666777777654 4567888887766 233 32 466677778999999999999999999999987654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.34 E-value=0.28 Score=37.36 Aligned_cols=111 Identities=15% Similarity=0.044 Sum_probs=75.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHHHHhh----cCCHHH
Q 005802 472 GHEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMIDLYGR----ANQLEK 547 (676)
Q Consensus 472 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 547 (676)
.++++|+++|++..+.|. ......|. .....+.++|..++++..+. | ++.....|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 367788888888887762 22222332 34556888899988887654 3 34555556666654 457889
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHH----hCCHhHHHHHHHHHHccc
Q 005802 548 AIEFMKSIPTEEDAVILGSFLNVCRL----NRNAELAGEAEEKLLRLE 591 (676)
Q Consensus 548 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 591 (676)
|.++|++.....++.....|...|.. ..|.++|...++++.+..
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 99999887755566666667666654 458889999999987763
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.51 E-value=1.1 Score=30.82 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHhhccCcHHHHHHHHHHchhhcCCCCCHHHHHHHHH
Q 005802 473 HEEKAILLFEEMLEKGIKPDAVTFVAILSAFRHCGSVEMGEKYFNSMTADYKISPETDHYACMID 537 (676)
Q Consensus 473 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 537 (676)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++..+.+ ..++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 44566677777777888999999999999999999999999999988764 3344556666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.07 E-value=3.9 Score=28.09 Aligned_cols=59 Identities=8% Similarity=0.082 Sum_probs=44.2
Q ss_pred HHHHHHHHhHhccCCCCCChhhHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCCchhhHHH
Q 005802 106 DALKLFIEMQSADEHIRMDEFTVTSTLNLCVKLLNVGFGRQLHAFMVKTSNDASGFAVSSLI 167 (676)
Q Consensus 106 ~a~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (676)
++.+-++.+.. ....|++....+.+++|.+.+|+..|.++++-++... .++...|..++
T Consensus 24 e~rrgmN~l~~--~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 24 ELRKGMNTLVG--YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHTT--SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhc--cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 56666777776 7788999999999999999999999999999887662 22233444443
|