Citrus Sinensis ID: 005807
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 676 | 2.2.26 [Sep-21-2011] | |||||||
| Q01899 | 675 | Heat shock 70 kDa protein | N/A | no | 0.997 | 0.998 | 0.894 | 0.0 | |
| P37900 | 675 | Heat shock 70 kDa protein | N/A | no | 0.995 | 0.997 | 0.887 | 0.0 | |
| Q9LDZ0 | 682 | Heat shock 70 kDa protein | yes | no | 1.0 | 0.991 | 0.825 | 0.0 | |
| Q08276 | 682 | Heat shock 70 kDa protein | N/A | no | 1.0 | 0.991 | 0.831 | 0.0 | |
| Q8GUM2 | 682 | Heat shock 70 kDa protein | no | no | 0.994 | 0.985 | 0.806 | 0.0 | |
| Q11KJ6 | 636 | Chaperone protein DnaK OS | yes | no | 0.917 | 0.974 | 0.676 | 0.0 | |
| Q2VYT1 | 642 | Chaperone protein DnaK OS | yes | no | 0.877 | 0.923 | 0.698 | 0.0 | |
| B2IBR4 | 632 | Chaperone protein DnaK OS | yes | no | 0.912 | 0.976 | 0.678 | 0.0 | |
| P50019 | 633 | Chaperone protein DnaK OS | yes | no | 0.918 | 0.981 | 0.668 | 0.0 | |
| B6IVA4 | 640 | Chaperone protein DnaK OS | yes | no | 0.917 | 0.968 | 0.662 | 0.0 |
| >sp|Q01899|HSP7M_PHAVU Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/675 (89%), Positives = 644/675 (95%), Gaps = 1/675 (0%)
Query: 3 IAGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDLGT 62
+A +LRSLRRRDVASA SA +SLTG+ KP++ + W+ LARPFS+RPAGNDVIG+DLGT
Sbjct: 1 MAAVLRSLRRRDVASATFSAYRSLTGSTKPAYVAQKWSCLARPFSSRPAGNDVIGIDLGT 60
Query: 63 TNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKR 122
TNSCV+VMEGKNPKVIENSEG RTTPSVVAFNQKGELLVGTPAKRQAVTNP NT+FGTKR
Sbjct: 61 TNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKR 120
Query: 123 LIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYL 182
LIGRRF+D QTQKEMKMVPFKIV APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE+YL
Sbjct: 121 LIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYL 180
Query: 183 GKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF 242
GKSVS+AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF
Sbjct: 181 GKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF 240
Query: 243 DLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKL 302
DLGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDNALL+FLV+EFKRTE IDLS+D+L
Sbjct: 241 DLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRL 300
Query: 303 ALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTK 362
ALQRLRE+AEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFE LVNHLIERTK
Sbjct: 301 ALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTK 360
Query: 363 APCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422
APCK+CLKDAN++IKDVDEVLLVGGMTRVPKVQE+V IFGKSPSKGVNPDEAVA+GAAI
Sbjct: 361 APCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFGKSPSKGVNPDEAVAMGAAI 420
Query: 423 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 482
QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG
Sbjct: 421 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 480
Query: 483 IKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQ 542
IKVLQGEREMA+DNK LGEF+L+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQ
Sbjct: 481 IKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQ 540
Query: 543 QITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKI 602
QITIRSSGGLSE EIEKMVKEAELHAQ+DQERKTLIDIRN+ADTTIYSIEKSLGEYREKI
Sbjct: 541 QITIRSSGGLSEDEIEKMVKEAELHAQKDQERKTLIDIRNSADTTIYSIEKSLGEYREKI 600
Query: 603 PGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM-AGGSSDNSASGGSQ 661
P E AKEIEDAVSDLRKAM+G+++D IK+KLDAANKAVSKIG+HM G S +SA G
Sbjct: 601 PSETAKEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGGSQG 660
Query: 662 GGDQAPEAEYEEVKK 676
GGDQAPEAEYEEVKK
Sbjct: 661 GGDQAPEAEYEEVKK 675
|
Phaseolus vulgaris (taxid: 3885) |
| >sp|P37900|HSP7M_PEA Heat shock 70 kDa protein, mitochondrial OS=Pisum sativum GN=HSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/673 (88%), Positives = 647/673 (96%)
Query: 4 AGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDLGTT 63
A +LRSL+RR+++S+ +SA +SLTG+ K S+A+ ASL RPFS+RPAGNDVIG+DLGTT
Sbjct: 3 ATLLRSLQRRNLSSSSVSAFRSLTGSTKTSYATHKLASLTRPFSSRPAGNDVIGIDLGTT 62
Query: 64 NSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRL 123
NSCV+VMEGKNPKVIENSEG RTTPSVVAFNQK ELLVGTPAKRQAVTNP NTLFGTKRL
Sbjct: 63 NSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKSELLVGTPAKRQAVTNPTNTLFGTKRL 122
Query: 124 IGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG 183
IGRRF+DAQTQKEMKMVP+KIV APNGDAWVEANGQQYSPSQIGAFVLTK+KETAE+YLG
Sbjct: 123 IGRRFDDAQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKIKETAEAYLG 182
Query: 184 KSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD 243
K++S+AV+TVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD
Sbjct: 183 KTISKAVVTVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD 242
Query: 244 LGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLA 303
LGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDNALL+FLVSEFKRTE IDL++DKLA
Sbjct: 243 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTESIDLAKDKLA 302
Query: 304 LQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363
LQRLRE+AEKAKIELSSTSQTEINLPFI+ADASGAKHLNITLTRSKFE LVN+LIERTKA
Sbjct: 303 LQRLREAAEKAKIELSSTSQTEINLPFISADASGAKHLNITLTRSKFEALVNNLIERTKA 362
Query: 364 PCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423
PCK+CLKDANI+IKDVDEVLLVGGMTRVPKVQ++V+EIFGKSPSKGVNPDEAVA+GAA+Q
Sbjct: 363 PCKSCLKDANISIKDVDEVLLVGGMTRVPKVQQVVSEIFGKSPSKGVNPDEAVAMGAALQ 422
Query: 424 GGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGI 483
GGILRGDVKELLLLDVTPLSLGIETLGGIFTRLI+RNTTIPTKKSQVFSTAADNQTQVGI
Sbjct: 423 GGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGI 482
Query: 484 KVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQ 543
KVLQGEREMAADNK+LGEF+L+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQQ
Sbjct: 483 KVLQGEREMAADNKSLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQ 542
Query: 544 ITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIP 603
ITIRSSGGLS+ EI+KMVKEAELHAQRDQERK LIDIRN+ADT+IYSIEKSL EYREKIP
Sbjct: 543 ITIRSSGGLSDDEIDKMVKEAELHAQRDQERKALIDIRNSADTSIYSIEKSLAEYREKIP 602
Query: 604 GEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQGG 663
EVAKEIEDAVSDLR AMAGE+ D IKAKLDAANKAVSKIGQHM+GGSS + GGSQGG
Sbjct: 603 AEVAKEIEDAVSDLRTAMAGENADDIKAKLDAANKAVSKIGQHMSGGSSGGPSEGGSQGG 662
Query: 664 DQAPEAEYEEVKK 676
+QAPEAEYEEVKK
Sbjct: 663 EQAPEAEYEEVKK 675
|
Pisum sativum (taxid: 3888) |
| >sp|Q9LDZ0|HSP7J_ARATH Heat shock 70 kDa protein 10, mitochondrial OS=Arabidopsis thaliana GN=HSP70-10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1147 bits (2966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/682 (82%), Positives = 620/682 (90%), Gaps = 6/682 (0%)
Query: 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWASA----NWASLARPFSARPAGNDVI 56
MA A +LRS+RRR+V S+ SA + L+ + K S S+ N+ S +R FS++PAGNDVI
Sbjct: 1 MATAALLRSIRRREVVSSPFSAYRCLSSSGKASLNSSYLGQNFRSFSRAFSSKPAGNDVI 60
Query: 57 GVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANT 116
G+DLGTTNSCVAVMEGKNPKVIEN+EG RTTPSVVAFN KGELLVGTPAKRQAVTNP NT
Sbjct: 61 GIDLGTTNSCVAVMEGKNPKVIENAEGARTTPSVVAFNTKGELLVGTPAKRQAVTNPTNT 120
Query: 117 LFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 176
+ GTKRLIGR+F+D QTQKEMKMVP+KIV APNGDAWVEANGQQYSPSQIGAF+LTKMKE
Sbjct: 121 VSGTKRLIGRKFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKE 180
Query: 177 TAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 236
TAE+YLGKSV++AV+TVPAYFNDAQRQATKDAGRIAGLDV+RIINEPTAAALSYGM NKE
Sbjct: 181 TAEAYLGKSVTKAVVTVPAYFNDAQRQATKDAGRIAGLDVERIINEPTAAALSYGMTNKE 240
Query: 237 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERID 296
GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL+FLV+EFK TE ID
Sbjct: 241 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKTTEGID 300
Query: 297 LSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNH 356
L++D+LALQRLRE+AEKAKIELSSTSQTEINLPFITADASGAKH NITLTRS+FETLVNH
Sbjct: 301 LAKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHFNITLTRSRFETLVNH 360
Query: 357 LIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAV 416
LIERT+ PCKNCLKDA I+ K+VDEVLLVGGMTRVPKVQ IV EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRDPCKNCLKDAGISAKEVDEVLLVGGMTRVPKVQSIVAEIFGKSPSKGVNPDEAV 420
Query: 417 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 476
A+GAA+QGGILRGDVKELLLLDVTPLSLGIETLGG+FTRLI RNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQVFSTAAD 480
Query: 477 NQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDK 536
NQTQVGI+VLQGEREMA DNK LGEF+L+GIPP+PRG+PQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIRVLQGEREMATDNKLLGEFDLVGIPPSPRGVPQIEVTFDIDANGIVTVSAKDK 540
Query: 537 ATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG 596
TGK QQITIRSSGGLSE +I+KMV+EAELHAQ+D+ERK LID +N ADTTIYSIEKSLG
Sbjct: 541 TTGKVQQITIRSSGGLSEDDIQKMVREAELHAQKDKERKELIDTKNTADTTIYSIEKSLG 600
Query: 597 EYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM--AGGSSDN 654
EYREKIP E+AKEIEDAV+DLR A +G+D++ IKAK++AANKAVSKIG+HM G
Sbjct: 601 EYREKIPSEIAKEIEDAVADLRSASSGDDLNEIKAKIEAANKAVSKIGEHMSGGSGGGSA 660
Query: 655 SASGGSQGGDQAPEAEYEEVKK 676
G G DQAPEAEYEEVKK
Sbjct: 661 PGGGSEGGSDQAPEAEYEEVKK 682
|
In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q08276|HSP7M_SOLTU Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1135 bits (2937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/682 (83%), Positives = 618/682 (90%), Gaps = 6/682 (0%)
Query: 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWA----SANWASLARPFSARPAGNDVI 56
MA A +LRSLRRR+ A++ +SA ++L N KPSW A WA LARPFS++PAGN++I
Sbjct: 1 MATAALLRSLRRREFATSSISAYRTLASNTKPSWCPSLVGAKWAGLARPFSSKPAGNEII 60
Query: 57 GVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANT 116
G+DLGTTNSCVAVMEGKNPKVIENSEG RTTPSVVAFNQKGELLVGTPAKRQAVTNP NT
Sbjct: 61 GIDLGTTNSCVAVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
Query: 117 LFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 176
L GTKRLIGRRF+D QTQKEMKMVP+KIV NGDAWVEANGQQYSP+QIGAF+LTKMKE
Sbjct: 121 LSGTKRLIGRRFDDPQTQKEMKMVPYKIVRGSNGDAWVEANGQQYSPTQIGAFILTKMKE 180
Query: 177 TAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 236
TAE+YLGKS+++AVITVPAYFNDAQRQA KDAG IAGLDVQRIINEPTAAALSYGMN+KE
Sbjct: 181 TAEAYLGKSINKAVITVPAYFNDAQRQAIKDAGAIAGLDVQRIINEPTAAALSYGMNSKE 240
Query: 237 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERID 296
GL+AVFDLGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE ID
Sbjct: 241 GLVAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTEGID 300
Query: 297 LSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNH 356
LS+DKLALQRLRE+AEKAKIELSSTSQT+INLPFITADASGAKHLNITLTRSKFETLVNH
Sbjct: 301 LSKDKLALQRLREAAEKAKIELSSTSQTDINLPFITADASGAKHLNITLTRSKFETLVNH 360
Query: 357 LIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAV 416
LIERT+ PCKNCLKDA +++KDVDEVLLVGGMTRVPKVQEIV+EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRNPCKNCLKDAGVSLKDVDEVLLVGGMTRVPKVQEIVSEIFGKSPSKGVNPDEAV 420
Query: 417 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 476
A+GAA+QGGILRGDVKELLLLDVTPL+ GIETLGGIFTRLINRNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAALQGGILRGDVKELLLLDVTPLARGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 480
Query: 477 NQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRG-IPQIEVTFDIDANGIVTVSAKD 535
NQTQVGIKVLQGEREMA+DNK LGEF+L+GIPPAP+G PQIEV FDIDANG+VTVSAKD
Sbjct: 481 NQTQVGIKVLQGEREMASDNKLLGEFDLVGIPPAPKGYCPQIEVIFDIDANGMVTVSAKD 540
Query: 536 KATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSL 595
KAT KEQQITIRSSGGLSE EI+KMV+EAE+HAQR + + L+ TTIYSIEKSL
Sbjct: 541 KATSKEQQITIRSSGGLSEDEIDKMVREAEMHAQRIKNARHLLISGIVQSTTIYSIEKSL 600
Query: 596 GEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM-AGGSSDN 654
EY+EK+P EV EIE A+SDLR AM E+ID IKAKLDAANKAVSKIG+HM G S
Sbjct: 601 SEYKEKVPKEVVTEIETAISDLRAAMGTENIDDIKAKLDAANKAVSKIGEHMAGGSSGGA 660
Query: 655 SASGGSQGGDQAPEAEYEEVKK 676
S GG+QGGDQ PEAEYEEVKK
Sbjct: 661 SGGGGAQGGDQPPEAEYEEVKK 682
|
Solanum tuberosum (taxid: 4113) |
| >sp|Q8GUM2|HSP7I_ARATH Heat shock 70 kDa protein 9, mitochondrial OS=Arabidopsis thaliana GN=HSP70-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/677 (80%), Positives = 612/677 (90%), Gaps = 5/677 (0%)
Query: 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDL 60
MA +LRS RRR+V A +SA KS++ N K S LARPF +RP GNDVIG+DL
Sbjct: 1 MASVALLRSFRRREVQMASVSAFKSVSANGKNSMF-GKLGYLARPFCSRPVGNDVIGIDL 59
Query: 61 GTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGT 120
GTTNSCV+VMEGK +VIEN+EG+RTTPSVVA NQKGELLVGTPAKRQAVTNP NT+FG+
Sbjct: 60 GTTNSCVSVMEGKTARVIENAEGSRTTPSVVAMNQKGELLVGTPAKRQAVTNPTNTIFGS 119
Query: 121 KRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAES 180
KRLIGRRF+D QTQKEMKMVP+KIV APNGDAWVEANGQ++SPSQIGA VLTKMKETAE+
Sbjct: 120 KRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEANGQKFSPSQIGANVLTKMKETAEA 179
Query: 181 YLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIA 240
YLGKS+++AV+TVPAYFNDAQRQATKDAG+IAGLDVQRIINEPTAAALSYGMNNKEG+IA
Sbjct: 180 YLGKSINKAVVTVPAYFNDAQRQATKDAGKIAGLDVQRIINEPTAAALSYGMNNKEGVIA 239
Query: 241 VFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQD 300
VFDLGGGTFDVS+LEIS+GVFEVKATNGDTFLGGEDFDN LLE+LV+EFKR++ IDL++D
Sbjct: 240 VFDLGGGTFDVSILEISSGVFEVKATNGDTFLGGEDFDNTLLEYLVNEFKRSDNIDLTKD 299
Query: 301 KLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIER 360
LALQRLRE+AEKAKIELSST+QTEINLPFITADASGAKHLNITLTRSKFE LV LIER
Sbjct: 300 NLALQRLREAAEKAKIELSSTTQTEINLPFITADASGAKHLNITLTRSKFEGLVGKLIER 359
Query: 361 TKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGA 420
T++PC+NCLKDA +TIK+VDEVLLVGGMTRVPKVQEIV+EIFGKSP KGVNPDEAVA+GA
Sbjct: 360 TRSPCQNCLKDAGVTIKEVDEVLLVGGMTRVPKVQEIVSEIFGKSPCKGVNPDEAVAMGA 419
Query: 421 AIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQ 480
AIQGGILRGDVK+LLLLDV PLSLGIETLG +FT+LI RNTTIPTKKSQVFSTAADNQ Q
Sbjct: 420 AIQGGILRGDVKDLLLLDVVPLSLGIETLGAVFTKLIPRNTTIPTKKSQVFSTAADNQMQ 479
Query: 481 VGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGK 540
VGIKVLQGEREMAADNK LGEF+L+GIPPAPRG+PQIEVTFDIDANGI TVSAKDKATGK
Sbjct: 480 VGIKVLQGEREMAADNKVLGEFDLVGIPPAPRGMPQIEVTFDIDANGITTVSAKDKATGK 539
Query: 541 EQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYRE 600
EQ ITIRSSGGLS+ EI +MVKEAEL+AQ+DQE+K LID+RN+ADTTIYS+EKSL EYRE
Sbjct: 540 EQNITIRSSGGLSDDEINRMVKEAELNAQKDQEKKQLIDLRNSADTTIYSVEKSLSEYRE 599
Query: 601 KIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMA----GGSSDNSA 656
KIP E+A EIE AVSDLR AMAGED++ IKAK++AANKAVSKIG+HM+ SD S+
Sbjct: 600 KIPAEIASEIETAVSDLRTAMAGEDVEDIKAKVEAANKAVSKIGEHMSKGSGSSGSDGSS 659
Query: 657 SGGSQGGDQAPEAEYEE 673
G+ G +Q PEAE+EE
Sbjct: 660 GEGTSGTEQTPEAEFEE 676
|
In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q11KJ6|DNAK_MESSB Chaperone protein DnaK OS=Mesorhizobium sp. (strain BNC1) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/625 (67%), Positives = 515/625 (82%), Gaps = 5/625 (0%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG+DLGTTNSCVAVM+GK+ KVIEN+EG RTTPS+VAF E LVG PAKRQAVTNP
Sbjct: 4 VIGIDLGTTNSCVAVMDGKDAKVIENAEGARTTPSIVAFTDSDERLVGQPAKRQAVTNPE 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NT F KRLIGRRF D +K+ K+VP+KIV A NGDAWVE++G +YSPSQI A +L KM
Sbjct: 64 NTFFAIKRLIGRRFEDPMVEKDKKLVPYKIVKADNGDAWVESHGTKYSPSQISAMILQKM 123
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
KETAESYLG+ V +AVITVPAYFNDAQRQATKDAG+IAGL+V RIINEPTAAAL+YG++
Sbjct: 124 KETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 183
Query: 235 KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
KEG IAV+DLGGGTFD+S+LEI +GVFEVK+TNGDTFLGGEDFD L+ +L EFK+ +
Sbjct: 184 KEGKTIAVYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFKKEQ 243
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
IDL DKLALQRL+E+AEKAKIELSS+SQTEINLPFITAD +G KHL I LTR+KFE+L
Sbjct: 244 GIDLKNDKLALQRLKEAAEKAKIELSSSSQTEINLPFITADQTGPKHLAIKLTRAKFESL 303
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
V L+ RT PC+ LKDA ++ ++DEV+LVGGMTR+PKVQE V FGK P KGVNPD
Sbjct: 304 VEDLVTRTIEPCRAALKDAGLSAGEIDEVVLVGGMTRMPKVQETVKNFFGKEPHKGVNPD 363
Query: 414 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 473
E VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPTKKSQVFST
Sbjct: 364 EVVAMGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFST 423
Query: 474 AADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSA 533
A DNQ V I+V QGEREMAADNK LG+F+L+GIPPAPRG+PQIEVTFDIDANGIV VSA
Sbjct: 424 AEDNQNAVTIRVFQGEREMAADNKLLGQFDLVGIPPAPRGMPQIEVTFDIDANGIVNVSA 483
Query: 534 KDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEK 593
KDK TGKEQQI I++SGGLS++EIEKMVK+AE +A+ D++R+ ++++N A+ I+S EK
Sbjct: 484 KDKGTGKEQQIRIQASGGLSDAEIEKMVKDAEANAEADKKRRETVEVKNQAEALIHSTEK 543
Query: 594 SLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSD 653
SL +Y +K+ + K IE+A+++L+ A GED D I+AK A +A K+GQ + S
Sbjct: 544 SLKDYGDKVSEDDRKAIENAIAELKTATEGEDADAIRAKTTALAEASMKLGQAVYEASQA 603
Query: 654 NSASGGSQ--GG--DQAPEAEYEEV 674
+A+GG++ GG D +A++EE+
Sbjct: 604 ENAAGGTEETGGAKDDVVDADFEEI 628
|
Acts as a chaperone. Mesorhizobium sp. (strain BNC1) (taxid: 266779) |
| >sp|Q2VYT1|DNAK_MAGSA Chaperone protein DnaK OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/594 (69%), Positives = 498/594 (83%), Gaps = 1/594 (0%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG+DLGTTNSCVAVMEGKN KVIEN+EG RTTPS+ AF + GE LVG PAKRQAVTNP
Sbjct: 4 VIGIDLGTTNSCVAVMEGKNAKVIENAEGMRTTPSMTAFTESGERLVGQPAKRQAVTNPT 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
+TLF KRLIGRRF D T+K+M +VP+ IV NGDAWVEA +YSPSQ+ AF+L KM
Sbjct: 64 STLFAIKRLIGRRFEDPITKKDMNLVPYHIVAGDNGDAWVEARDAKYSPSQVSAFILQKM 123
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
KETAE YLG+ V++AVITVPAYFNDAQRQATKDAGRIAGL+V RIINEPTAAAL+YG+
Sbjct: 124 KETAEGYLGEKVTQAVITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALAYGLEK 183
Query: 235 K-EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
K G IAV+DLGGGTFDVSVLEI +GVFEVK+TNGDTFLGGEDFD ++++L EFK+ +
Sbjct: 184 KGAGTIAVYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDARIMDYLADEFKKEQ 243
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
IDL +D+LALQRL+E+AEKAKIELSS+ QTE+NLPFITADASG KHLNI LTRSK E L
Sbjct: 244 GIDLRKDRLALQRLKEAAEKAKIELSSSMQTEVNLPFITADASGPKHLNIKLTRSKLEAL 303
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
V L+ RT PCK LKDA + ++DEV+LVGGMTR+PK+QE+V E FG+ P KGVNPD
Sbjct: 304 VEDLVARTVEPCKAALKDAGVKASEIDEVILVGGMTRMPKIQEVVKEFFGREPHKGVNPD 363
Query: 414 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 473
E VA+GAAIQGG+L+G+VK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPT+KSQVFST
Sbjct: 364 EVVAIGAAIQGGVLKGEVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTRKSQVFST 423
Query: 474 AADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSA 533
A DNQT V I+V QGEREMAADNK LG+F+L+GIPPAPRG+PQ+EVTFDIDANG+V VSA
Sbjct: 424 AEDNQTAVTIRVFQGEREMAADNKVLGQFDLVGIPPAPRGVPQVEVTFDIDANGLVNVSA 483
Query: 534 KDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEK 593
KDKATGKEQQI I++SGGLS+++IEKMVKEAE HA D++RK LI+ RN+AD I++ EK
Sbjct: 484 KDKATGKEQQIRIQASGGLSDADIEKMVKEAEAHAAEDKKRKELIEARNHADGLIHTTEK 543
Query: 594 SLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM 647
SL E+ +K E+ IE ++ L+ M G+D++ IKAK ++ +A K+G+ M
Sbjct: 544 SLKEFGDKAGAELTGAIEKEITALKAVMDGDDVEAIKAKTESLMQASMKLGEAM 597
|
Acts as a chaperone. Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108) |
| >sp|B2IBR4|DNAK_BEII9 Chaperone protein DnaK OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/623 (67%), Positives = 509/623 (81%), Gaps = 6/623 (0%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG+DLGTTNSCVAVMEG PKVIEN+EG RTTPS+VAF GE LVG PAKRQ VTNP
Sbjct: 4 VIGIDLGTTNSCVAVMEGTTPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQGVTNPE 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
T F KRLIGR F D T+K++ +VP+KI APNGDAWVEA+G+ YSPSQI AF+L KM
Sbjct: 64 RTFFAIKRLIGRTFEDPMTKKDIGLVPYKITKAPNGDAWVEADGKPYSPSQISAFILQKM 123
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
KETAESYLG+ VS+AVITVPAYFNDAQRQATKDAG+IAGL+V RIINEPTAAAL+YG++
Sbjct: 124 KETAESYLGQPVSQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 183
Query: 235 K-EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
K G IAV+DLGGGTFDVS+LEI +GVFEVK+TNGDTFLGGEDFD L+E+L EFK+
Sbjct: 184 KGSGTIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDTRLVEYLADEFKKEN 243
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
IDL +DKLALQRL+E+AEKAKIELSS +QTEINLP+ITADA+G KHL + LTR+KFE L
Sbjct: 244 GIDLKKDKLALQRLKEAAEKAKIELSSATQTEINLPYITADATGPKHLALKLTRAKFEAL 303
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
V+ LI++T PC+ LKDA ++ +VDEV+LVGGMTR+PKVQEIV + FGK P KGVNPD
Sbjct: 304 VDDLIQKTVEPCRKALKDAGLSAGEVDEVVLVGGMTRMPKVQEIVKQFFGKEPHKGVNPD 363
Query: 414 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 473
E VA+GAA+Q G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPTKKSQVFST
Sbjct: 364 EVVAIGAAVQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFST 423
Query: 474 AADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSA 533
A DNQT V I+V QGEREMAADNK LG+F+L+GIP APRG+PQIEVTFDIDANGIV V+A
Sbjct: 424 AEDNQTAVTIRVFQGEREMAADNKLLGQFDLVGIPGAPRGVPQIEVTFDIDANGIVNVTA 483
Query: 534 KDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEK 593
KDKAT KEQQI I++SGGLSE++I+KMVKEAE HA D+ R+ L+D +N+ + I+S EK
Sbjct: 484 KDKATNKEQQIRIQASGGLSEADIDKMVKEAEQHAAEDKVRRELVDAKNHGEAIIHSTEK 543
Query: 594 SLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM--AGGS 651
SL E+ K+ I+ A++ L+ +AGE+++GIKAK DA +A K+G+ M AG
Sbjct: 544 SLAEFGTKVAESDKSTIDAAIAALKTELAGENLEGIKAKTDALVQASMKLGEAMYKAGAE 603
Query: 652 SDNSASGGSQGGDQAPEAEYEEV 674
SA D +A+++EV
Sbjct: 604 GGESAEAPK---DDVIDADFKEV 623
|
Acts as a chaperone. Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963) |
| >sp|P50019|DNAK_AGRT5 Chaperone protein DnaK OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dnaK PE=2 SV=2 | Back alignment and function description |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/624 (66%), Positives = 511/624 (81%), Gaps = 3/624 (0%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG+DLGTTNSCVAVM+GK+ KVIEN+EG RTTPS+VAF+ GE LVG PAKRQAVTNP
Sbjct: 4 VIGIDLGTTNSCVAVMDGKDTKVIENAEGARTTPSMVAFSDDGERLVGQPAKRQAVTNPT 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NTLF KRLIGRR+ D +K+ +VPF+IV NGDAWV+A + YSPSQI A +L KM
Sbjct: 64 NTLFAVKRLIGRRYEDPTVEKDKALVPFEIVKGDNGDAWVKAQDKNYSPSQISAMILQKM 123
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
KETAESYLG+ V +AVITVPAYFNDAQRQATKDAGRIAGLDV RIINEPTAAAL+YG++
Sbjct: 124 KETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALAYGLDK 183
Query: 235 KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
KEG IAV+DLGGGTFD+SVLEI +GVFEVK+TNGDTFLGGEDFD L+E+L EFK+ +
Sbjct: 184 KEGKTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLAGEFKKDQ 243
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
IDL DKLALQRL+E+AEKAKIELSS+ QTEINLPFITADASG KHL + LTR+KFE+L
Sbjct: 244 GIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKFESL 303
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
V+ L++RT APCK LKDA +T ++DEV+LVGGM+R+PKVQE+V ++FGK P KGVNPD
Sbjct: 304 VDDLVQRTVAPCKAALKDAGVTAAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPD 363
Query: 414 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 473
E VA+GAAIQ G+L+GDVK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPTKKSQ FST
Sbjct: 364 EVVAMGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQTFST 423
Query: 474 AADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSA 533
A DNQ+ V I+V QGEREMA DNK LG+F+L+G+PP+PRG+PQIEVTFDIDANGIV VSA
Sbjct: 424 AEDNQSAVTIRVSQGEREMAQDNKLLGQFDLVGLPPSPRGVPQIEVTFDIDANGIVQVSA 483
Query: 534 KDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEK 593
KDK TGKEQQI I++SGGLS+++IEKMVK+AE +A+ D++R+ ++ +N A++ I+S EK
Sbjct: 484 KDKGTGKEQQIRIQASGGLSDADIEKMVKDAEANAEADKKRRAGVEAKNQAESLIHSTEK 543
Query: 594 SLGEYREKIPGEVAKEIEDAVSDLRKAM--AGEDIDGIKAKLDAANKAVSKIGQHMAGGS 651
S+ EY +K+ K IEDA++ L+ A+ A D D I+AK + K+GQ +
Sbjct: 544 SVKEYGDKVSETDRKAIEDAIASLKTAVEAAEPDADDIQAKTQTLMEVSMKLGQAIYEAQ 603
Query: 652 SDNSASGGSQGGDQAPEAEYEEVK 675
+ ++G D +A+YEE+K
Sbjct: 604 QAEAGDASAEGKDDVVDADYEEIK 627
|
Acts as a chaperone. Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299) |
| >sp|B6IVA4|DNAK_RHOCS Chaperone protein DnaK OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/629 (66%), Positives = 514/629 (81%), Gaps = 9/629 (1%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG+DLGTTNSCVA+MEG KVIEN+EG RTTPS+VAF Q GE LVG PAKRQAVTNP
Sbjct: 4 VIGIDLGTTNSCVAIMEGTQAKVIENAEGARTTPSMVAFTQGGERLVGQPAKRQAVTNPE 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NT F KRLIGRR++D TQK+ +VP++IV NGDAWVE++G+QYSPS+I AF+L KM
Sbjct: 64 NTFFAIKRLIGRRYDDPLTQKDKGLVPYRIVGGKNGDAWVESHGKQYSPSEISAFILQKM 123
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
KETAE+YLG+ V++AVITVPAYFND+QRQATKDAG+IAGL+V RIINEPTAAAL+YGM
Sbjct: 124 KETAENYLGEKVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGMEK 183
Query: 235 K-EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
K G IAV+DLGGGTFD+SVLEI +GVFEVK+TNGDTFLGGEDFD ++++L EF++ +
Sbjct: 184 KGTGTIAVYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDAKIIDYLAEEFQKEQ 243
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
IDL +D+LALQRL+E+AEKAKIELS++ QTE+NLPFITADASG KHLNI LTRSK E L
Sbjct: 244 GIDLRKDRLALQRLKEAAEKAKIELSASMQTEVNLPFITADASGPKHLNIKLTRSKLEAL 303
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
V+ L+ RT PCK LKDA + ++DEV+LVGGMTR+PK+ E V + FG+ P +GVNPD
Sbjct: 304 VDDLVRRTIEPCKAALKDAGLKASEIDEVILVGGMTRMPKIIETVKQFFGREPHRGVNPD 363
Query: 414 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 473
E VA+GAAIQGG+L+G+VK++LLLDVTPLSLGIETLGG+FTRLI+RNTTIPTKKSQVFST
Sbjct: 364 EVVAVGAAIQGGVLKGEVKDVLLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQVFST 423
Query: 474 AADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSA 533
A DNQT V I+V QGEREMAADNK LG+F+LMGIP APRG+PQIEVTFDIDANGIV VSA
Sbjct: 424 AEDNQTAVTIRVFQGEREMAADNKMLGQFDLMGIPSAPRGVPQIEVTFDIDANGIVNVSA 483
Query: 534 KDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEK 593
KDKATGKEQ I I++SGGLS+++I++MVK+AE HA D++R+ L++ RN AD I++ E+
Sbjct: 484 KDKATGKEQTIRIQASGGLSDADIDRMVKDAEAHAAEDKKRRELVEARNQADGLIHTTER 543
Query: 594 SLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDA-------ANKAVSKIGQH 646
+L E +K+PG E A+++LR AMA +D+ IKAK DA +A+ K GQ
Sbjct: 544 TLSENGDKLPGAEKSAAEAAIAELRTAMAADDVADIKAKTDALAQASMKLGEALYKAGQE 603
Query: 647 MAGGSSDNSASGGSQ-GGDQAPEAEYEEV 674
G + SG S+ GG++ +A++EEV
Sbjct: 604 TGGPGAPGGDSGASEAGGEKVVDADFEEV 632
|
Acts as a chaperone. Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 676 | ||||||
| 356549495 | 674 | PREDICTED: heat shock 70 kDa protein, mi | 0.997 | 1.0 | 0.906 | 0.0 | |
| 356554826 | 674 | PREDICTED: heat shock 70 kDa protein, mi | 0.997 | 1.0 | 0.905 | 0.0 | |
| 399940 | 675 | RecName: Full=Heat shock 70 kDa protein, | 0.997 | 0.998 | 0.894 | 0.0 | |
| 585272 | 675 | RecName: Full=Heat shock 70 kDa protein, | 0.995 | 0.997 | 0.887 | 0.0 | |
| 356524786 | 677 | PREDICTED: heat shock 70 kDa protein, mi | 0.976 | 0.974 | 0.9 | 0.0 | |
| 449459554 | 680 | PREDICTED: heat shock 70 kDa protein, mi | 0.977 | 0.972 | 0.891 | 0.0 | |
| 356521247 | 677 | PREDICTED: heat shock 70 kDa protein, mi | 0.976 | 0.974 | 0.896 | 0.0 | |
| 225429228 | 679 | PREDICTED: heat shock 70 kDa protein, mi | 0.977 | 0.973 | 0.891 | 0.0 | |
| 255554571 | 657 | heat shock protein, putative [Ricinus co | 0.961 | 0.989 | 0.882 | 0.0 | |
| 224105855 | 682 | predicted protein [Populus trichocarpa] | 1.0 | 0.991 | 0.862 | 0.0 |
| >gi|356549495|ref|XP_003543129.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1241 bits (3212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/674 (90%), Positives = 655/674 (97%)
Query: 3 IAGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDLGT 62
+A +LRSLRRRDVASA LSA +SLTG+ KP++ + NW+SL+RPFS+RPAGNDVIG+DLGT
Sbjct: 1 MASLLRSLRRRDVASASLSAYRSLTGSTKPAYVAHNWSSLSRPFSSRPAGNDVIGIDLGT 60
Query: 63 TNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKR 122
TNSCV+VMEGKNPKVIENSEG RTTPSVVAFNQKGELLVGTPAKRQAVTNP NTLFGTKR
Sbjct: 61 TNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKR 120
Query: 123 LIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYL 182
LIGRRF+DAQTQKEMKMVPFKIV APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE+YL
Sbjct: 121 LIGRRFDDAQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYL 180
Query: 183 GKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF 242
GKS+S+AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF
Sbjct: 181 GKSISKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF 240
Query: 243 DLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKL 302
DLGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDNALL+FLV+EFKRTE IDLS+D+L
Sbjct: 241 DLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRL 300
Query: 303 ALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTK 362
ALQRLRE+AEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFE LVNHLIERTK
Sbjct: 301 ALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTK 360
Query: 363 APCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422
PCK+CLKDANI+IKDVDEVLLVGGMTRVPKVQE+V+EIFGKSPSKGVNPDEAVA+GAAI
Sbjct: 361 VPCKSCLKDANISIKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAAI 420
Query: 423 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 482
QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG
Sbjct: 421 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 480
Query: 483 IKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQ 542
IKVLQGEREMAADNK LGEF+L+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQ
Sbjct: 481 IKVLQGEREMAADNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQ 540
Query: 543 QITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKI 602
QITIRSSGGLS+ EIEKMVKEAELHAQ+DQERK LIDIRN+ADTTIYSIEKSLGEYREKI
Sbjct: 541 QITIRSSGGLSDDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYREKI 600
Query: 603 PGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQG 662
P EVAKEIEDAVSDLR+AM+G+++D IK+KLDAANKAVSKIG+HM+GGSS S++GGSQG
Sbjct: 601 PSEVAKEIEDAVSDLRQAMSGDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGGSQG 660
Query: 663 GDQAPEAEYEEVKK 676
GDQAPEAEYEEVKK
Sbjct: 661 GDQAPEAEYEEVKK 674
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554826|ref|XP_003545743.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1238 bits (3202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/674 (90%), Positives = 654/674 (97%)
Query: 3 IAGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDLGT 62
+A +LRSLRRRDVASA LSA +SLTG+ KP++ + NW+SL+RPFS+RPAGNDVIG+DLGT
Sbjct: 1 MASLLRSLRRRDVASASLSAYRSLTGSTKPAYVAHNWSSLSRPFSSRPAGNDVIGIDLGT 60
Query: 63 TNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKR 122
TNSCV+VMEGKNPKVIENSEG RTTPSVVAFNQKGELLVGTPAKRQAVTNP NTLFGTKR
Sbjct: 61 TNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKR 120
Query: 123 LIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYL 182
LIGRRF+DAQTQKEMKMVPFKIV APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE+YL
Sbjct: 121 LIGRRFDDAQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYL 180
Query: 183 GKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF 242
GKS+S+AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN KEGLIAVF
Sbjct: 181 GKSISKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNKKEGLIAVF 240
Query: 243 DLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKL 302
DLGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDNALL+FLV+EFKRTE IDL++D+L
Sbjct: 241 DLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLAKDRL 300
Query: 303 ALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTK 362
ALQRLRE+AEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFE LVNHLIERTK
Sbjct: 301 ALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTK 360
Query: 363 APCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422
APCK+CLKDANI+IKDVDEVLLVGGMTRVPKVQE+V+EIFGKSPSKGVNPDEAVA+GAAI
Sbjct: 361 APCKSCLKDANISIKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAAI 420
Query: 423 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 482
QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG
Sbjct: 421 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 480
Query: 483 IKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQ 542
IKVLQGEREMAADNK LGEF+L+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQ
Sbjct: 481 IKVLQGEREMAADNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQ 540
Query: 543 QITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKI 602
QITIRSSGGLSE EIEKMVKEAELHAQ+DQERK LIDIRN+ADTTIYSIEKSLGEYR+KI
Sbjct: 541 QITIRSSGGLSEDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYRDKI 600
Query: 603 PGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQG 662
P EVAKEIEDAVSDLRKAM+ +++D IK+KLDAANKAVSKIG+HM+GGSS S++GGSQG
Sbjct: 601 PSEVAKEIEDAVSDLRKAMSEDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGGSQG 660
Query: 663 GDQAPEAEYEEVKK 676
GDQAPEAEYEEVKK
Sbjct: 661 GDQAPEAEYEEVKK 674
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|399940|sp|Q01899.1|HSP7M_PHAVU RecName: Full=Heat shock 70 kDa protein, mitochondrial; Flags: Precursor gi|22636|emb|CAA47345.1| 70 kDa heat shock protein [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 1229 bits (3179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/675 (89%), Positives = 644/675 (95%), Gaps = 1/675 (0%)
Query: 3 IAGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDLGT 62
+A +LRSLRRRDVASA SA +SLTG+ KP++ + W+ LARPFS+RPAGNDVIG+DLGT
Sbjct: 1 MAAVLRSLRRRDVASATFSAYRSLTGSTKPAYVAQKWSCLARPFSSRPAGNDVIGIDLGT 60
Query: 63 TNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKR 122
TNSCV+VMEGKNPKVIENSEG RTTPSVVAFNQKGELLVGTPAKRQAVTNP NT+FGTKR
Sbjct: 61 TNSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKR 120
Query: 123 LIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYL 182
LIGRRF+D QTQKEMKMVPFKIV APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE+YL
Sbjct: 121 LIGRRFDDPQTQKEMKMVPFKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYL 180
Query: 183 GKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF 242
GKSVS+AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF
Sbjct: 181 GKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVF 240
Query: 243 DLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKL 302
DLGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDNALL+FLV+EFKRTE IDLS+D+L
Sbjct: 241 DLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDRL 300
Query: 303 ALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTK 362
ALQRLRE+AEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFE LVNHLIERTK
Sbjct: 301 ALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTK 360
Query: 363 APCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422
APCK+CLKDAN++IKDVDEVLLVGGMTRVPKVQE+V IFGKSPSKGVNPDEAVA+GAAI
Sbjct: 361 APCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQEVVLNIFGKSPSKGVNPDEAVAMGAAI 420
Query: 423 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 482
QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG
Sbjct: 421 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 480
Query: 483 IKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQ 542
IKVLQGEREMA+DNK LGEF+L+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQ
Sbjct: 481 IKVLQGEREMASDNKMLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQ 540
Query: 543 QITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKI 602
QITIRSSGGLSE EIEKMVKEAELHAQ+DQERKTLIDIRN+ADTTIYSIEKSLGEYREKI
Sbjct: 541 QITIRSSGGLSEDEIEKMVKEAELHAQKDQERKTLIDIRNSADTTIYSIEKSLGEYREKI 600
Query: 603 PGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM-AGGSSDNSASGGSQ 661
P E AKEIEDAVSDLRKAM+G+++D IK+KLDAANKAVSKIG+HM G S +SA G
Sbjct: 601 PSETAKEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGGSQG 660
Query: 662 GGDQAPEAEYEEVKK 676
GGDQAPEAEYEEVKK
Sbjct: 661 GGDQAPEAEYEEVKK 675
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|585272|sp|P37900.1|HSP7M_PEA RecName: Full=Heat shock 70 kDa protein, mitochondrial; Flags: Precursor gi|20835|emb|CAA38536.1| HSP70 [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/673 (88%), Positives = 647/673 (96%)
Query: 4 AGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDLGTT 63
A +LRSL+RR+++S+ +SA +SLTG+ K S+A+ ASL RPFS+RPAGNDVIG+DLGTT
Sbjct: 3 ATLLRSLQRRNLSSSSVSAFRSLTGSTKTSYATHKLASLTRPFSSRPAGNDVIGIDLGTT 62
Query: 64 NSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRL 123
NSCV+VMEGKNPKVIENSEG RTTPSVVAFNQK ELLVGTPAKRQAVTNP NTLFGTKRL
Sbjct: 63 NSCVSVMEGKNPKVIENSEGARTTPSVVAFNQKSELLVGTPAKRQAVTNPTNTLFGTKRL 122
Query: 124 IGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG 183
IGRRF+DAQTQKEMKMVP+KIV APNGDAWVEANGQQYSPSQIGAFVLTK+KETAE+YLG
Sbjct: 123 IGRRFDDAQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKIKETAEAYLG 182
Query: 184 KSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD 243
K++S+AV+TVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD
Sbjct: 183 KTISKAVVTVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD 242
Query: 244 LGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLA 303
LGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDNALL+FLVSEFKRTE IDL++DKLA
Sbjct: 243 LGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTESIDLAKDKLA 302
Query: 304 LQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363
LQRLRE+AEKAKIELSSTSQTEINLPFI+ADASGAKHLNITLTRSKFE LVN+LIERTKA
Sbjct: 303 LQRLREAAEKAKIELSSTSQTEINLPFISADASGAKHLNITLTRSKFEALVNNLIERTKA 362
Query: 364 PCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423
PCK+CLKDANI+IKDVDEVLLVGGMTRVPKVQ++V+EIFGKSPSKGVNPDEAVA+GAA+Q
Sbjct: 363 PCKSCLKDANISIKDVDEVLLVGGMTRVPKVQQVVSEIFGKSPSKGVNPDEAVAMGAALQ 422
Query: 424 GGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGI 483
GGILRGDVKELLLLDVTPLSLGIETLGGIFTRLI+RNTTIPTKKSQVFSTAADNQTQVGI
Sbjct: 423 GGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGI 482
Query: 484 KVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQ 543
KVLQGEREMAADNK+LGEF+L+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQQ
Sbjct: 483 KVLQGEREMAADNKSLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQ 542
Query: 544 ITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIP 603
ITIRSSGGLS+ EI+KMVKEAELHAQRDQERK LIDIRN+ADT+IYSIEKSL EYREKIP
Sbjct: 543 ITIRSSGGLSDDEIDKMVKEAELHAQRDQERKALIDIRNSADTSIYSIEKSLAEYREKIP 602
Query: 604 GEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQGG 663
EVAKEIEDAVSDLR AMAGE+ D IKAKLDAANKAVSKIGQHM+GGSS + GGSQGG
Sbjct: 603 AEVAKEIEDAVSDLRTAMAGENADDIKAKLDAANKAVSKIGQHMSGGSSGGPSEGGSQGG 662
Query: 664 DQAPEAEYEEVKK 676
+QAPEAEYEEVKK
Sbjct: 663 EQAPEAEYEEVKK 675
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524786|ref|XP_003531009.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/660 (90%), Positives = 635/660 (96%)
Query: 17 SAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPK 76
S+ LSA +SLT K S+ WASL+RPFS++PAGNDVIG+DLGTTNSCV+VMEGKNPK
Sbjct: 18 SSSLSAFRSLTSGTKTSYVGNKWASLSRPFSSKPAGNDVIGIDLGTTNSCVSVMEGKNPK 77
Query: 77 VIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKE 136
VIENSEG RTTPSVVAFNQK ELLVGTPAKRQAVTNP NTLFGTKRLIGRRF+D+QTQKE
Sbjct: 78 VIENSEGARTTPSVVAFNQKAELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDSQTQKE 137
Query: 137 MKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAY 196
MKMVP+KIV APNGDAWVEANGQQYSPSQ+GAFVLTKMKETAESYLGKSVS+AVITVPAY
Sbjct: 138 MKMVPYKIVKAPNGDAWVEANGQQYSPSQVGAFVLTKMKETAESYLGKSVSKAVITVPAY 197
Query: 197 FNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI 256
FNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVS+LEI
Sbjct: 198 FNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEI 257
Query: 257 SNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKI 316
SNGVFEVKATNGDTFLGGEDFDNALL+FLV+EFKRTE IDLS+DKLALQRLRE+AEKAKI
Sbjct: 258 SNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTENIDLSKDKLALQRLREAAEKAKI 317
Query: 317 ELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITI 376
ELSSTSQTEINLPFITADASGAKHLNITLTRSKFE LVNHLIERTKAPCK+CLKDAN++I
Sbjct: 318 ELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANVSI 377
Query: 377 KDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLL 436
K+VDEVLLVGGMTRVPKVQE+V+ IFGKSPSKGVNPDEAVA+GAAIQGGILRGDVKELLL
Sbjct: 378 KEVDEVLLVGGMTRVPKVQEVVSAIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLL 437
Query: 437 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADN 496
LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMA DN
Sbjct: 438 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAVDN 497
Query: 497 KALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESE 556
K+LGEFEL+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQQITIRSSGGLSE E
Sbjct: 498 KSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDE 557
Query: 557 IEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSD 616
I+KMVKEAELHAQ+DQERK LIDIRN+ADTTIYSIEKSLGEYR+KIP EVAKEIEDAVSD
Sbjct: 558 IDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYRDKIPSEVAKEIEDAVSD 617
Query: 617 LRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQGGDQAPEAEYEEVKK 676
LR AMAG++ D IKAKLDAANKAVSKIG+HM+GGSS +S++GGSQGG+QAPEAEYEEVKK
Sbjct: 618 LRTAMAGDNADEIKAKLDAANKAVSKIGEHMSGGSSGSSSAGGSQGGEQAPEAEYEEVKK 677
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459554|ref|XP_004147511.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Cucumis sativus] gi|449511372|ref|XP_004163938.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1196 bits (3095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/665 (89%), Positives = 637/665 (95%), Gaps = 4/665 (0%)
Query: 16 ASAHLSACKSLTGNVKPSWA----SANWASLARPFSARPAGNDVIGVDLGTTNSCVAVME 71
AS+ LSA +SL+ N KPSW S +WASL+RPFS++PAGNDVIGVDLGTTNSCVAVME
Sbjct: 16 ASSSLSAYRSLSSNAKPSWGNSHLSQSWASLSRPFSSKPAGNDVIGVDLGTTNSCVAVME 75
Query: 72 GKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDA 131
GKNPKVIENSEG RTTPSVVAFNQKGELLVGTPAKRQAVTNP NT+FGTKRLIGRRF+D
Sbjct: 76 GKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDP 135
Query: 132 QTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVI 191
QTQKEMKMVP+KIV APNGDAWVEANGQQYSPSQIGAFVLTKMKETAE+YLGKSVS+AVI
Sbjct: 136 QTQKEMKMVPYKIVKAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVI 195
Query: 192 TVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDV 251
TVPAYFNDAQRQATKDAGRIAGL+V RIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDV
Sbjct: 196 TVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDV 255
Query: 252 SVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESA 311
S+LEISNGVFEVKATNGDTFLGGEDFDNALL+FLVSEFKRTE IDL++D+LALQRLRE+A
Sbjct: 256 SILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRTEGIDLTKDRLALQRLREAA 315
Query: 312 EKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371
EKAKIELSSTSQTEINLPFITAD+SGAKHLNITLTRSKFE+LVNHLIERTKAPC+NCLKD
Sbjct: 316 EKAKIELSSTSQTEINLPFITADSSGAKHLNITLTRSKFESLVNHLIERTKAPCRNCLKD 375
Query: 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDV 431
A+I+IK+VDEVLLVGGMTRVPKVQE+VTEIFGKSPSKGVNPDEAVA+GAAIQGGILRGDV
Sbjct: 376 ASISIKEVDEVLLVGGMTRVPKVQEVVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDV 435
Query: 432 KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGERE 491
KELLLLDVTPLSLGIETLGGIFTRLI+RNTTIPTKKSQVFSTAADNQTQVGIKVLQGERE
Sbjct: 436 KELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGERE 495
Query: 492 MAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG 551
MA DNK LGEFEL+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQQITIRSSGG
Sbjct: 496 MATDNKLLGEFELVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGG 555
Query: 552 LSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611
LSE EI+KMVKEAELHAQ+DQERK LIDIRN+ADTTIYSIEKSL EYREKIP EVAKEIE
Sbjct: 556 LSEDEIDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLSEYREKIPSEVAKEIE 615
Query: 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQGGDQAPEAEY 671
DAV+DLRKAM+ ++++ IK+KLDAANKAVSKIGQHMAGGS D ++ GGSQGG+QA EAEY
Sbjct: 616 DAVADLRKAMSEDNLEEIKSKLDAANKAVSKIGQHMAGGSGDGASGGGSQGGEQASEAEY 675
Query: 672 EEVKK 676
EEVKK
Sbjct: 676 EEVKK 680
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521247|ref|XP_003529268.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1196 bits (3094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/660 (89%), Positives = 633/660 (95%)
Query: 17 SAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPK 76
S+ LSA +SLT K S+ WASL+RPFS++PAGNDVIG+DLGTTNSCV+VMEGKNPK
Sbjct: 18 SSSLSAFRSLTSGTKTSYVGNKWASLSRPFSSKPAGNDVIGIDLGTTNSCVSVMEGKNPK 77
Query: 77 VIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKE 136
VIENSEG RTTPSVVAFNQK ELLVGTPAKRQAVTNP NTLFGTKRLIGRRF+D+QTQKE
Sbjct: 78 VIENSEGARTTPSVVAFNQKAELLVGTPAKRQAVTNPTNTLFGTKRLIGRRFDDSQTQKE 137
Query: 137 MKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAY 196
MKMVP+KIV A NGDAWVEANGQQYSPSQ+GAFVLTKMKETAESYLGKSVS+AVITVPAY
Sbjct: 138 MKMVPYKIVKASNGDAWVEANGQQYSPSQVGAFVLTKMKETAESYLGKSVSKAVITVPAY 197
Query: 197 FNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI 256
FNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVS+LEI
Sbjct: 198 FNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEI 257
Query: 257 SNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKI 316
SNGVFEVKATNGDTFLGGEDFDNALL+FLV+EFKRTE IDLS+DKLALQRLRE+AEKAKI
Sbjct: 258 SNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKRTESIDLSKDKLALQRLREAAEKAKI 317
Query: 317 ELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITI 376
ELSSTSQTEINLPFITADASGAKHLNITLTRSKFE LVNHLIERTKAPCK+CLKDANI+I
Sbjct: 318 ELSSTSQTEINLPFITADASGAKHLNITLTRSKFEALVNHLIERTKAPCKSCLKDANISI 377
Query: 377 KDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLL 436
K+VDEVLLVGGMTRVPKVQE+V+ IFGKSPSKGVNPDEAVA+GAAIQGGILRGDVKELLL
Sbjct: 378 KEVDEVLLVGGMTRVPKVQEVVSAIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLL 437
Query: 437 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADN 496
LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMA DN
Sbjct: 438 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAVDN 497
Query: 497 KALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESE 556
K+LGEFEL+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK+TGKEQQITIRSSGGLSE E
Sbjct: 498 KSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDE 557
Query: 557 IEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSD 616
I+KMVKEAELHAQ+DQERK LIDIRN+ADT+IYSIEKSLGEYR+KIP EVAKEIEDAVSD
Sbjct: 558 IDKMVKEAELHAQKDQERKALIDIRNSADTSIYSIEKSLGEYRDKIPSEVAKEIEDAVSD 617
Query: 617 LRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQGGDQAPEAEYEEVKK 676
LR AMAG++ D IKAKLDAANKAVSKIG+H++GGSS S++GGSQGG+QAPEAEYEEVKK
Sbjct: 618 LRTAMAGDNADEIKAKLDAANKAVSKIGEHISGGSSGGSSAGGSQGGEQAPEAEYEEVKK 677
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429228|ref|XP_002263457.1| PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1195 bits (3092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/664 (89%), Positives = 632/664 (95%), Gaps = 3/664 (0%)
Query: 16 ASAHLSACKSLTGNVKPSWASA--NWASLARPFSARPAGNDVIGVDLGTTNSCVAVMEGK 73
AS LSA ++LTGN K SW ++ WASLAR FS++PAGNDVIG+DLGTTNSCVAVMEGK
Sbjct: 16 ASPSLSAYRALTGNTKSSWNTSPTGWASLARAFSSKPAGNDVIGIDLGTTNSCVAVMEGK 75
Query: 74 NPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133
NPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNP NT+FGTKRLIGRRF+D QT
Sbjct: 76 NPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQT 135
Query: 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITV 193
QKEMKMVP+KIV APNGDAWVEANGQQYSPSQIGAF+LTKMKETAESYLGKSVS+AVITV
Sbjct: 136 QKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKETAESYLGKSVSKAVITV 195
Query: 194 PAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSV 253
PAYFNDAQRQATKDAGRI+GLDVQRIINEPTAAALSYG+NNKEGLIAVFDLGGGTFDVS+
Sbjct: 196 PAYFNDAQRQATKDAGRISGLDVQRIINEPTAAALSYGLNNKEGLIAVFDLGGGTFDVSI 255
Query: 254 LEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEK 313
LEISNGVFEVKATNGDTFLGGEDFDN LLEFLVSEFKRTE IDLS+D+LALQRLRE+AEK
Sbjct: 256 LEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEK 315
Query: 314 AKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDAN 373
AKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFE+LVNHLIERT+ PCK+CLKDA
Sbjct: 316 AKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNHLIERTRGPCKSCLKDAG 375
Query: 374 ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKE 433
I+ K+VDEVLLVGGMTRVPKVQE+V+EIFGKSPSKGVNPDEAVA+GAAIQGGILRGDVKE
Sbjct: 376 ISTKEVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKE 435
Query: 434 LLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMA 493
LLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMA
Sbjct: 436 LLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMA 495
Query: 494 ADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLS 553
+DNK LGEFELMGIPPAPRG+PQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLS
Sbjct: 496 SDNKLLGEFELMGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLS 555
Query: 554 ESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDA 613
E EIEKMVKEAELHAQ+DQERK LIDIRN+ADTTIYS+EKSLGEYR+KIP EVA EIE A
Sbjct: 556 EDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSVEKSLGEYRDKIPSEVATEIESA 615
Query: 614 VSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMA-GGSSDNSASGGSQGGDQAPEAEYE 672
V+DLRKAM+G++I+ IKAKLDAANKAVSKIGQHMA G ++ GGSQGGDQAPEAEYE
Sbjct: 616 VADLRKAMSGDNIEEIKAKLDAANKAVSKIGQHMAGGSGGGSTPGGGSQGGDQAPEAEYE 675
Query: 673 EVKK 676
EVKK
Sbjct: 676 EVKK 679
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554571|ref|XP_002518324.1| heat shock protein, putative [Ricinus communis] gi|223542544|gb|EEF44084.1| heat shock protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1190 bits (3078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/654 (88%), Positives = 622/654 (95%), Gaps = 4/654 (0%)
Query: 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWASAN----WASLARPFSARPAGNDVI 56
MA A ++R+LRRRDVASA SA K LTGNVKPSW +N W SL+R FS++PAGNDVI
Sbjct: 1 MATAALIRTLRRRDVASAPFSAYKCLTGNVKPSWTPSNLGHNWGSLSRAFSSKPAGNDVI 60
Query: 57 GVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANT 116
G+DLGTTNSCVAVMEGKNPKVIENSEG+RTTPSVVAFNQKGELLVGTPAKRQAVTNP NT
Sbjct: 61 GIDLGTTNSCVAVMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNT 120
Query: 117 LFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 176
+FGTKRLIGR+F+D QTQKEMKMVP+KIV A NGDAWVEANGQQYSPSQIGAFVLTKMKE
Sbjct: 121 VFGTKRLIGRKFDDPQTQKEMKMVPYKIVRASNGDAWVEANGQQYSPSQIGAFVLTKMKE 180
Query: 177 TAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 236
T+E+YLGK+V++AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE
Sbjct: 181 TSEAYLGKTVTKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 240
Query: 237 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERID 296
GLIAVFDLGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDNALLE+LVSEFKRTE ID
Sbjct: 241 GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLEYLVSEFKRTEAID 300
Query: 297 LSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNH 356
L++D+LALQRLRE+AEKAKIELSST+QTEINLPFITADASGAKHLNITLTRSKFE+LVNH
Sbjct: 301 LTKDRLALQRLREAAEKAKIELSSTAQTEINLPFITADASGAKHLNITLTRSKFESLVNH 360
Query: 357 LIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAV 416
LIERT+APCKNCLKDA I+ KDVDEVLLVGGMTRVPKVQEIV+EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRAPCKNCLKDAGISTKDVDEVLLVGGMTRVPKVQEIVSEIFGKSPSKGVNPDEAV 420
Query: 417 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 476
A+GAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 480
Query: 477 NQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDK 536
NQTQVGIKVLQGEREMA+DNK LGEFEL+GIPPAPRG+PQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIKVLQGEREMASDNKLLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 540
Query: 537 ATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG 596
+TGKEQQITIRSSGGLSE EI+KMVKEAEL AQ+DQERK LIDI+N+ADTTIYSIEKSL
Sbjct: 541 STGKEQQITIRSSGGLSEDEIDKMVKEAELFAQKDQERKALIDIKNSADTTIYSIEKSLN 600
Query: 597 EYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGG 650
EYREKIP E AKEIED+++DLR AMAGE+ D IK+KLDAANKAVSKIG+HM+ G
Sbjct: 601 EYREKIPAETAKEIEDSLADLRTAMAGENADEIKSKLDAANKAVSKIGEHMSKG 654
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105855|ref|XP_002313955.1| predicted protein [Populus trichocarpa] gi|222850363|gb|EEE87910.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1189 bits (3076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/682 (86%), Positives = 645/682 (94%), Gaps = 6/682 (0%)
Query: 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWAS----LARPFSARPAGNDVI 56
MA A +LRSLRRRDVASA L+A +SL+ NVKPSWA +N++ L+R FSA+PAG+DVI
Sbjct: 1 MATAALLRSLRRRDVASAPLAAYRSLSNNVKPSWAPSNFSQNLSGLSRAFSAKPAGSDVI 60
Query: 57 GVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANT 116
G+DLGTTNSCVAVMEGK+PKVIEN+EG+RTTPSVVAF KGELL+GTPAKRQAVTNP+NT
Sbjct: 61 GIDLGTTNSCVAVMEGKSPKVIENAEGSRTTPSVVAFTPKGELLMGTPAKRQAVTNPSNT 120
Query: 117 LFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 176
+FGTKRLIGR+F+D QTQKEMKMVP+KIV APNGDAWVE+NGQQYSPSQIGAF+LTKMKE
Sbjct: 121 VFGTKRLIGRKFDDPQTQKEMKMVPYKIVRAPNGDAWVESNGQQYSPSQIGAFILTKMKE 180
Query: 177 TAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 236
TAE+YLGK++S+AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE
Sbjct: 181 TAEAYLGKTISKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 240
Query: 237 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERID 296
GLIAVFDLGGGTFDVS+LEISNGVFEVKATNGDTFLGGEDFDN LLE+LV+EFKRTE ID
Sbjct: 241 GLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEYLVNEFKRTEGID 300
Query: 297 LSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNH 356
LS+DKLALQRLRE+AEKAKIELSST+QT+INLPFITAD+SGAKHLNITLTRSKFE+LVNH
Sbjct: 301 LSKDKLALQRLREAAEKAKIELSSTTQTDINLPFITADSSGAKHLNITLTRSKFESLVNH 360
Query: 357 LIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAV 416
LIERT+ PCKNCLKDA I+ K+VDEVLLVGGMTRVP+VQEIV+EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRIPCKNCLKDAGISTKEVDEVLLVGGMTRVPRVQEIVSEIFGKSPSKGVNPDEAV 420
Query: 417 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 476
A+GAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLI+RNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAAD 480
Query: 477 NQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDK 536
NQTQVGIKVLQGEREMA+DNK LGEFELMGIPPAPRG+PQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIKVLQGEREMASDNKMLGEFELMGIPPAPRGMPQIEVTFDIDANGIVTVSAKDK 540
Query: 537 ATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG 596
+TGKEQQITIRSSGGLSE EIEKMVKEAEL AQ+DQ+RK LIDI+N+ADTTIYSIEKSL
Sbjct: 541 STGKEQQITIRSSGGLSEDEIEKMVKEAELFAQKDQDRKALIDIKNSADTTIYSIEKSLD 600
Query: 597 EYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM--AGGSSDN 654
EYREKIP EVAKEIEDAV+DLRKAM G+++D IK+KLDAANKAVSKIG+H+ +
Sbjct: 601 EYREKIPSEVAKEIEDAVADLRKAMGGDNVDDIKSKLDAANKAVSKIGEHLSKGSSGGGD 660
Query: 655 SASGGSQGGDQAPEAEYEEVKK 676
SASGGSQGGDQAPEAEYEEVKK
Sbjct: 661 SASGGSQGGDQAPEAEYEEVKK 682
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 676 | ||||||
| TAIR|locus:2144801 | 682 | MTHSC70-2 "mitochondrial HSO70 | 1.0 | 0.991 | 0.816 | 2.3e-293 | |
| TAIR|locus:2121022 | 682 | mtHsc70-1 "mitochondrial heat | 0.994 | 0.985 | 0.797 | 2.9e-284 | |
| GENEDB_PFALCIPARUM|PF11_0351 | 663 | PF11_0351 "heat shock protein | 0.883 | 0.900 | 0.660 | 1.6e-212 | |
| UNIPROTKB|Q8II24 | 663 | PF11_0351 "Heat shock protein | 0.883 | 0.900 | 0.660 | 1.6e-212 | |
| UNIPROTKB|Q5ZM98 | 675 | HSPA9 "Stress-70 protein, mito | 0.869 | 0.871 | 0.663 | 7e-212 | |
| UNIPROTKB|F1NZ86 | 675 | HSPA9 "Stress-70 protein, mito | 0.869 | 0.871 | 0.663 | 8.9e-212 | |
| ZFIN|ZDB-GENE-030828-12 | 682 | hspa9 "heat shock protein 9" [ | 0.878 | 0.870 | 0.657 | 8e-211 | |
| UNIPROTKB|E2RAU5 | 679 | HSPA9 "Stress-70 protein, mito | 0.860 | 0.857 | 0.667 | 1e-210 | |
| MGI|MGI:96245 | 679 | Hspa9 "heat shock protein 9" [ | 0.860 | 0.857 | 0.667 | 1e-210 | |
| UNIPROTKB|F1RGJ3 | 679 | HSPA9 "Stress-70 protein, mito | 0.860 | 0.857 | 0.663 | 1.3e-210 |
| TAIR|locus:2144801 MTHSC70-2 "mitochondrial HSO70 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2817 (996.7 bits), Expect = 2.3e-293, P = 2.3e-293
Identities = 557/682 (81%), Positives = 614/682 (90%)
Query: 1 MAIAGILRSLRRRDVASAHLSA--CKSLTG--NVKPSWASANWASLARPFSARPAGNDVI 56
MA A +LRS+RRR+V S+ SA C S +G ++ S+ N+ S +R FS++PAGNDVI
Sbjct: 1 MATAALLRSIRRREVVSSPFSAYRCLSSSGKASLNSSYLGQNFRSFSRAFSSKPAGNDVI 60
Query: 57 GVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANT 116
G+DLGTTNSCVAVMEGKNPKVIEN+EG RTTPSVVAFN KGELLVGTPAKRQAVTNP NT
Sbjct: 61 GIDLGTTNSCVAVMEGKNPKVIENAEGARTTPSVVAFNTKGELLVGTPAKRQAVTNPTNT 120
Query: 117 LFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKE 176
+ GTKRLIGR+F+D QTQKEMKMVP+KIV APNGDAWVEANGQQYSPSQIGAF+LTKMKE
Sbjct: 121 VSGTKRLIGRKFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKE 180
Query: 177 TAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE 236
TAE+YLGKSV++AV+TVPAYFNDAQRQATKDAGRIAGLDV+RIINEPTAAALSYGM NKE
Sbjct: 181 TAEAYLGKSVTKAVVTVPAYFNDAQRQATKDAGRIAGLDVERIINEPTAAALSYGMTNKE 240
Query: 237 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERID 296
GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL+FLV+EFK TE ID
Sbjct: 241 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLDFLVNEFKTTEGID 300
Query: 297 LSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNH 356
L++D+LALQRLRE+AEKAKIELSSTSQTEINLPFITADASGAKH NITLTRS+FETLVNH
Sbjct: 301 LAKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHFNITLTRSRFETLVNH 360
Query: 357 LIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAV 416
LIERT+ PCKNCLKDA I+ K+VDEVLLVGGMTRVPKVQ IV EIFGKSPSKGVNPDEAV
Sbjct: 361 LIERTRDPCKNCLKDAGISAKEVDEVLLVGGMTRVPKVQSIVAEIFGKSPSKGVNPDEAV 420
Query: 417 ALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAAD 476
A+GAA+QGGILRGDVKELLLLDVTPLSLGIETLGG+FTRLI RNTTIPTKKSQVFSTAAD
Sbjct: 421 AMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGVFTRLITRNTTIPTKKSQVFSTAAD 480
Query: 477 NQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDK 536
NQTQVGI+VLQGEREMA DNK LGEF+L+GIPP+PRG+PQIEVTFDIDANGIVTVSAKDK
Sbjct: 481 NQTQVGIRVLQGEREMATDNKLLGEFDLVGIPPSPRGVPQIEVTFDIDANGIVTVSAKDK 540
Query: 537 ATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG 596
TGK QQITIRSSGGLSE +I+KMV+EAELHAQ+D+ERK LID +N ADTTIYSIEKSLG
Sbjct: 541 TTGKVQQITIRSSGGLSEDDIQKMVREAELHAQKDKERKELIDTKNTADTTIYSIEKSLG 600
Query: 597 EYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMXXXXXXXXX 656
EYREKIP E+AKEIEDAV+DLR A +G+D++ IKAK++AANKAVSKIG+HM
Sbjct: 601 EYREKIPSEIAKEIEDAVADLRSASSGDDLNEIKAKIEAANKAVSKIGEHMSGGSGGGSA 660
Query: 657 --XXXXXXXXXXPEAEYEEVKK 676
PEAEYEEVKK
Sbjct: 661 PGGGSEGGSDQAPEAEYEEVKK 682
|
|
| TAIR|locus:2121022 mtHsc70-1 "mitochondrial heat shock protein 70-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2731 (966.4 bits), Expect = 2.9e-284, P = 2.9e-284
Identities = 540/677 (79%), Positives = 602/677 (88%)
Query: 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWASANWASLARPFSARPAGNDVIGVDL 60
MA +LRS RRR+V A +SA KS++ N K S LARPF +RP GNDVIG+DL
Sbjct: 1 MASVALLRSFRRREVQMASVSAFKSVSANGKNSMFG-KLGYLARPFCSRPVGNDVIGIDL 59
Query: 61 GTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGT 120
GTTNSCV+VMEGK +VIEN+EG+RTTPSVVA NQKGELLVGTPAKRQAVTNP NT+FG+
Sbjct: 60 GTTNSCVSVMEGKTARVIENAEGSRTTPSVVAMNQKGELLVGTPAKRQAVTNPTNTIFGS 119
Query: 121 KRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAES 180
KRLIGRRF+D QTQKEMKMVP+KIV APNGDAWVEANGQ++SPSQIGA VLTKMKETAE+
Sbjct: 120 KRLIGRRFDDPQTQKEMKMVPYKIVKAPNGDAWVEANGQKFSPSQIGANVLTKMKETAEA 179
Query: 181 YLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIA 240
YLGKS+++AV+TVPAYFNDAQRQATKDAG+IAGLDVQRIINEPTAAALSYGMNNKEG+IA
Sbjct: 180 YLGKSINKAVVTVPAYFNDAQRQATKDAGKIAGLDVQRIINEPTAAALSYGMNNKEGVIA 239
Query: 241 VFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQD 300
VFDLGGGTFDVS+LEIS+GVFEVKATNGDTFLGGEDFDN LLE+LV+EFKR++ IDL++D
Sbjct: 240 VFDLGGGTFDVSILEISSGVFEVKATNGDTFLGGEDFDNTLLEYLVNEFKRSDNIDLTKD 299
Query: 301 KLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIER 360
LALQRLRE+AEKAKIELSST+QTEINLPFITADASGAKHLNITLTRSKFE LV LIER
Sbjct: 300 NLALQRLREAAEKAKIELSSTTQTEINLPFITADASGAKHLNITLTRSKFEGLVGKLIER 359
Query: 361 TKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGA 420
T++PC+NCLKDA +TIK+VDEVLLVGGMTRVPKVQEIV+EIFGKSP KGVNPDEAVA+GA
Sbjct: 360 TRSPCQNCLKDAGVTIKEVDEVLLVGGMTRVPKVQEIVSEIFGKSPCKGVNPDEAVAMGA 419
Query: 421 AIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQ 480
AIQGGILRGDVK+LLLLDV PLSLGIETLG +FT+LI RNTTIPTKKSQVFSTAADNQ Q
Sbjct: 420 AIQGGILRGDVKDLLLLDVVPLSLGIETLGAVFTKLIPRNTTIPTKKSQVFSTAADNQMQ 479
Query: 481 VGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGK 540
VGIKVLQGEREMAADNK LGEF+L+GIPPAPRG+PQIEVTFDIDANGI TVSAKDKATGK
Sbjct: 480 VGIKVLQGEREMAADNKVLGEFDLVGIPPAPRGMPQIEVTFDIDANGITTVSAKDKATGK 539
Query: 541 EQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYRE 600
EQ ITIRSSGGLS+ EI +MVKEAEL+AQ+DQE+K LID+RN+ADTTIYS+EKSL EYRE
Sbjct: 540 EQNITIRSSGGLSDDEINRMVKEAELNAQKDQEKKQLIDLRNSADTTIYSVEKSLSEYRE 599
Query: 601 KIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMXXXXXXXXXXXXX 660
KIP E+A EIE AVSDLR AMAGED++ IKAK++AANKAVSKIG+HM
Sbjct: 600 KIPAEIASEIETAVSDLRTAMAGEDVEDIKAKVEAANKAVSKIGEHMSKGSGSSGSDGSS 659
Query: 661 XXXXX----XPEAEYEE 673
PEAE+EE
Sbjct: 660 GEGTSGTEQTPEAEFEE 676
|
|
| GENEDB_PFALCIPARUM|PF11_0351 PF11_0351 "heat shock protein hsp70 homologue" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 2054 (728.1 bits), Expect = 1.6e-212, P = 1.6e-212
Identities = 395/598 (66%), Positives = 489/598 (81%)
Query: 51 AGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAV 110
A D+IG+DLGTTNSCVA+MEGK KVIENSEG RTTPSVVAF + LVG AKRQA+
Sbjct: 39 ASGDIIGIDLGTTNSCVAIMEGKQGKVIENSEGFRTTPSVVAFTNDNQRLVGIVAKRQAI 98
Query: 111 TNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFV 170
TNP NT++ TKR IGR++++ T+KE K +P+KIV A NGDAW+EA G++YSPSQIGA V
Sbjct: 99 TNPENTVYATKRFIGRKYDEDATKKEQKNLPYKIVRASNGDAWIEAQGKKYSPSQIGACV 158
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
L KMKETAE+YLG+ V +AVITVPAYFND+QRQATKDAG+IAGLDV RIINEPTAAAL++
Sbjct: 159 LEKMKETAENYLGRKVHQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 231 GMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289
G+ +G +IAV+DLGGGTFD+S+LEI +GVFEVKATNG+T LGGEDFD +LE+ +SEF
Sbjct: 219 GLEKSDGKVIAVYDLGGGTFDISILEILSGVFEVKATNGNTSLGGEDFDQRILEYFISEF 278
Query: 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349
K+ E IDL DKLALQRLRE+AE AKIELSS +QTEINLPFITA+ +G KHL I LTR+K
Sbjct: 279 KKKENIDLKNDKLALQRLREAAETAKIELSSKTQTEINLPFITANQTGPKHLQIKLTRAK 338
Query: 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKG 409
E L + L++ T PC+ C+KDA++ ++++E++LVGGMTR+PKV + V +IF +PSKG
Sbjct: 339 LEELCHDLLKGTIEPCEKCIKDADVKKEEINEIILVGGMTRMPKVTDTVKQIFQNNPSKG 398
Query: 410 VNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQ 469
VNPDEAVALGAAIQGG+L+G++K+LLLLDV PLSLGIETLGG+FT+LINRNTTIPTKKSQ
Sbjct: 399 VNPDEAVALGAAIQGGVLKGEIKDLLLLDVIPLSLGIETLGGVFTKLINRNTTIPTKKSQ 458
Query: 470 VFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529
+FSTAADNQTQV IKV QGEREMA+DNK LG F+L+GIPPAPRG+PQIEVTFD+DAN I+
Sbjct: 459 IFSTAADNQTQVSIKVFQGEREMASDNKLLGSFDLVGIPPAPRGVPQIEVTFDVDANAII 518
Query: 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIY 589
+SA DK T K+QQITI+SSGGLS+ EIEKMV+EAEL+ ++DQ +K L D +N A+T IY
Sbjct: 519 NISAIDKMTNKKQQITIQSSGGLSKEEIEKMVQEAELNREKDQLKKNLTDSKNEAETLIY 578
Query: 590 SIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM 647
S EK L ++++KI E+ ++ LR+ + ED+D IK + I Q M
Sbjct: 579 SSEKQLEDFKDKISDSDKDELRQKITVLREKLTSEDLDSIKDATKQLQEKSWAISQEM 636
|
|
| UNIPROTKB|Q8II24 PF11_0351 "Heat shock protein hsp70 homologue" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 2054 (728.1 bits), Expect = 1.6e-212, P = 1.6e-212
Identities = 395/598 (66%), Positives = 489/598 (81%)
Query: 51 AGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAV 110
A D+IG+DLGTTNSCVA+MEGK KVIENSEG RTTPSVVAF + LVG AKRQA+
Sbjct: 39 ASGDIIGIDLGTTNSCVAIMEGKQGKVIENSEGFRTTPSVVAFTNDNQRLVGIVAKRQAI 98
Query: 111 TNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFV 170
TNP NT++ TKR IGR++++ T+KE K +P+KIV A NGDAW+EA G++YSPSQIGA V
Sbjct: 99 TNPENTVYATKRFIGRKYDEDATKKEQKNLPYKIVRASNGDAWIEAQGKKYSPSQIGACV 158
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
L KMKETAE+YLG+ V +AVITVPAYFND+QRQATKDAG+IAGLDV RIINEPTAAAL++
Sbjct: 159 LEKMKETAENYLGRKVHQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 231 GMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289
G+ +G +IAV+DLGGGTFD+S+LEI +GVFEVKATNG+T LGGEDFD +LE+ +SEF
Sbjct: 219 GLEKSDGKVIAVYDLGGGTFDISILEILSGVFEVKATNGNTSLGGEDFDQRILEYFISEF 278
Query: 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349
K+ E IDL DKLALQRLRE+AE AKIELSS +QTEINLPFITA+ +G KHL I LTR+K
Sbjct: 279 KKKENIDLKNDKLALQRLREAAETAKIELSSKTQTEINLPFITANQTGPKHLQIKLTRAK 338
Query: 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKG 409
E L + L++ T PC+ C+KDA++ ++++E++LVGGMTR+PKV + V +IF +PSKG
Sbjct: 339 LEELCHDLLKGTIEPCEKCIKDADVKKEEINEIILVGGMTRMPKVTDTVKQIFQNNPSKG 398
Query: 410 VNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQ 469
VNPDEAVALGAAIQGG+L+G++K+LLLLDV PLSLGIETLGG+FT+LINRNTTIPTKKSQ
Sbjct: 399 VNPDEAVALGAAIQGGVLKGEIKDLLLLDVIPLSLGIETLGGVFTKLINRNTTIPTKKSQ 458
Query: 470 VFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529
+FSTAADNQTQV IKV QGEREMA+DNK LG F+L+GIPPAPRG+PQIEVTFD+DAN I+
Sbjct: 459 IFSTAADNQTQVSIKVFQGEREMASDNKLLGSFDLVGIPPAPRGVPQIEVTFDVDANAII 518
Query: 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIY 589
+SA DK T K+QQITI+SSGGLS+ EIEKMV+EAEL+ ++DQ +K L D +N A+T IY
Sbjct: 519 NISAIDKMTNKKQQITIQSSGGLSKEEIEKMVQEAELNREKDQLKKNLTDSKNEAETLIY 578
Query: 590 SIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM 647
S EK L ++++KI E+ ++ LR+ + ED+D IK + I Q M
Sbjct: 579 SSEKQLEDFKDKISDSDKDELRQKITVLREKLTSEDLDSIKDATKQLQEKSWAISQEM 636
|
|
| UNIPROTKB|Q5ZM98 HSPA9 "Stress-70 protein, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2048 (726.0 bits), Expect = 7.0e-212, P = 7.0e-212
Identities = 391/589 (66%), Positives = 491/589 (83%)
Query: 40 ASLARPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGEL 99
A+ +R +++ VIG+DLGTTNSCVAVMEGK KV+ENSEG RTTPSVVAF GE
Sbjct: 42 AASSRKYASEAIKGAVIGIDLGTTNSCVAVMEGKQAKVLENSEGARTTPSVVAFTADGER 101
Query: 100 LVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQ 159
LVG PAKRQAVTNP NT + TKRLIGRRF+D++ +K++K VPFKIV A NGDAWVEA+G+
Sbjct: 102 LVGMPAKRQAVTNPHNTFYATKRLIGRRFDDSEVKKDIKNVPFKIVRASNGDAWVEAHGK 161
Query: 160 QYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRI 219
YSPSQIGAFVL KMKETAE+YLG AVITVPAYFND+QRQATKDAG+I+GL+V R+
Sbjct: 162 LYSPSQIGAFVLMKMKETAENYLGHPAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRV 221
Query: 220 INEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFD 278
INEPTAAAL+YG++ E +IAV+DLGGGTFD+S+LEI GVFEVK+TNGDTFLGGEDFD
Sbjct: 222 INEPTAAALAYGLDKSEDKIIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFD 281
Query: 279 NALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGA 338
ALL+++V EFKR +DL++D +ALQR+RE++EKAK ELSS+ QT+INLP++T DASG
Sbjct: 282 QALLQYIVKEFKRETSVDLTKDNMALQRVREASEKAKCELSSSVQTDINLPYLTMDASGP 341
Query: 339 KHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIV 398
KHLN+ L+RS+FE +V LI+RT APC+ ++DA ++ D+ EV+LVGGMTR+PKVQ+ V
Sbjct: 342 KHLNMKLSRSQFEGIVADLIKRTVAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTV 401
Query: 399 TEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLIN 458
++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG+FT+LIN
Sbjct: 402 QDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLIN 461
Query: 459 RNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIE 518
RNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA+DNK LG+F L+GIPPAPRG+PQIE
Sbjct: 462 RNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMASDNKLLGQFTLVGIPPAPRGVPQIE 521
Query: 519 VTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLI 578
VTFDIDANGIV VSAKDK TG+EQQI I+SSGGLS+ EIE MVK AE +A+ D+ RK +
Sbjct: 522 VTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDEIENMVKNAEKYAEEDRRRKERV 581
Query: 579 DIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDID 627
+ N A+ I+ E + E+++++P + ++++ ++ +R+ +A +D +
Sbjct: 582 EAVNLAEGIIHDTESKMEEFKDQLPADECNKLKEEIAKMRELLARKDTE 630
|
|
| UNIPROTKB|F1NZ86 HSPA9 "Stress-70 protein, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2047 (725.6 bits), Expect = 8.9e-212, P = 8.9e-212
Identities = 391/589 (66%), Positives = 491/589 (83%)
Query: 40 ASLARPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGEL 99
A+ +R +++ VIG+DLGTTNSCVAVMEGK KV+ENSEG RTTPSVVAF GE
Sbjct: 42 AASSRKYASEAIKGAVIGIDLGTTNSCVAVMEGKQAKVLENSEGARTTPSVVAFTADGER 101
Query: 100 LVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQ 159
LVG PAKRQAVTNP NT + TKRLIGRRF+D++ +K++K VPFKIV A NGDAWVEA+G+
Sbjct: 102 LVGMPAKRQAVTNPHNTFYATKRLIGRRFDDSEVKKDIKNVPFKIVRASNGDAWVEAHGK 161
Query: 160 QYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRI 219
YSPSQIGAFVL KMKETAE+YLG AVITVPAYFND+QRQATKDAG+I+GL+V R+
Sbjct: 162 LYSPSQIGAFVLMKMKETAENYLGHPAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRV 221
Query: 220 INEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFD 278
INEPTAAAL+YG++ E +IAV+DLGGGTFD+S+LEI GVFEVK+TNGDTFLGGEDFD
Sbjct: 222 INEPTAAALAYGLDKSEDKIIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFD 281
Query: 279 NALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGA 338
ALL+++V EFKR +DL++D +ALQR+RE++EKAK ELSS+ QT+INLP++T DASG
Sbjct: 282 QALLQYIVKEFKRETGVDLTKDNMALQRVREASEKAKCELSSSVQTDINLPYLTMDASGP 341
Query: 339 KHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIV 398
KHLN+ L+RS+FE +V LI+RT APC+ ++DA ++ D+ EV+LVGGMTR+PKVQ+ V
Sbjct: 342 KHLNMKLSRSQFEGIVADLIKRTVAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTV 401
Query: 399 TEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLIN 458
++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG+FT+LIN
Sbjct: 402 QDLFGRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLIN 461
Query: 459 RNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIE 518
RNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA+DNK LG+F L+GIPPAPRG+PQIE
Sbjct: 462 RNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMASDNKLLGQFTLVGIPPAPRGVPQIE 521
Query: 519 VTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLI 578
VTFDIDANGIV VSAKDK TG+EQQI I+SSGGLS+ EIE MVK AE +A+ D+ RK +
Sbjct: 522 VTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDEIENMVKNAEKYAEEDRRRKERV 581
Query: 579 DIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDID 627
+ N A+ I+ E + E+++++P + ++++ ++ +R+ +A +D +
Sbjct: 582 EAVNLAEGIIHDTESKMEEFKDQLPADECNKLKEEIAKMRELLARKDTE 630
|
|
| ZFIN|ZDB-GENE-030828-12 hspa9 "heat shock protein 9" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 2038 (722.5 bits), Expect = 8.0e-211, P = 8.0e-211
Identities = 392/596 (65%), Positives = 487/596 (81%)
Query: 34 WASANWASLARPFSARPA-GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVA 92
W + AR A A VIG+DLGTTNSCVAVM+GKN KV+EN+EG RTTPSVVA
Sbjct: 36 WTQKTLQTAARRHYASEAIRGAVIGIDLGTTNSCVAVMDGKNAKVLENAEGARTTPSVVA 95
Query: 93 FNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDA 152
F GE LVG PAKRQAVTNP NTL+ TKRLIGRRF+DA+ QK++K VP+KIV A NGDA
Sbjct: 96 FTSDGERLVGMPAKRQAVTNPNNTLYATKRLIGRRFDDAEVQKDLKNVPYKIVRASNGDA 155
Query: 153 WVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212
W+E +G+ YSPSQ GAF+L KMKETAESYLG+SV AV+TVPAYFND+QRQATKDAG+IA
Sbjct: 156 WLEVHGKMYSPSQAGAFILIKMKETAESYLGQSVKNAVVTVPAYFNDSQRQATKDAGQIA 215
Query: 213 GLDVQRIINEPTAAALSYGMNN-KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTF 271
GL+V R+INEPTAAAL+YG++ ++ +IAV+DLGGGTFD+SVLEI GVFEVK+TNGDTF
Sbjct: 216 GLNVLRVINEPTAAALAYGLDKTQDKIIAVYDLGGGTFDISVLEIQKGVFEVKSTNGDTF 275
Query: 272 LGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFI 331
LGGE FD LL +V EFK+ +DL +D +ALQR+RE+AEKAK ELSS+ QT+INLP++
Sbjct: 276 LGGEGFDQHLLRHIVKEFKKESGVDLMKDNMALQRVREAAEKAKCELSSSLQTDINLPYL 335
Query: 332 TADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRV 391
T DASG KHLN+ LTRS+FE +V LI RT APC+ ++DA ++ D+ EVLLVGGMTR+
Sbjct: 336 TMDASGPKHLNMKLTRSQFEGIVADLIRRTVAPCQKAMQDAEVSKSDIGEVLLVGGMTRM 395
Query: 392 PKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 451
PKVQ+ V ++FG++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG
Sbjct: 396 PKVQQTVQDLFGRAPSKSVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGG 455
Query: 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAP 511
+FT+LINRNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA DNK LG+F L+GIPPAP
Sbjct: 456 VFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMATDNKVLGQFTLVGIPPAP 515
Query: 512 RGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRD 571
RG+PQIEVTFDIDANGIV VSAKDK TG+EQQI I+SSGGLS+ +IE MVK AE +A+ D
Sbjct: 516 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEED 575
Query: 572 QERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDID 627
+ RK ++ N A+ ++ E + E+++++P + ++++ +S +R+ ++ +D +
Sbjct: 576 RRRKDRVEAVNMAEGIVHDTESKMEEFKDQLPADECNKLKEEISKVRELLSRKDTE 631
|
|
| UNIPROTKB|E2RAU5 HSPA9 "Stress-70 protein, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 2037 (722.1 bits), Expect = 1.0e-210, P = 1.0e-210
Identities = 389/583 (66%), Positives = 483/583 (82%)
Query: 44 RPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGT 103
R +++ V+G+DLGTTNSCVAVMEGK KV+EN+EG RTTPSVVAF GE LVG
Sbjct: 44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTSDGERLVGM 103
Query: 104 PAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSP 163
PAKRQAVTNP NT + TKRLIGRR++D + QK++K VPFKIV A NGDAWVEA+G+ YSP
Sbjct: 104 PAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSP 163
Query: 164 SQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEP 223
SQIGAFVL KMKETAE+YLG + AVITVPAYFND+QRQATKDAG+I+GL+V R+INEP
Sbjct: 164 SQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEP 223
Query: 224 TAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282
TAAAL+YG++ E +IAV+DLGGGTFD+S+LEI GVFEVK+TNGDTFLGGEDFD ALL
Sbjct: 224 TAAALAYGLDKSEDKIIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALL 283
Query: 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLN 342
+V EFKR +DL++D +ALQR+RE+AEKAK ELSS+ QT+INLP++T DASG KHLN
Sbjct: 284 RHIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDASGPKHLN 343
Query: 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF 402
+ LTR++FE +V LI RT APC+ ++DA ++ D+ EV+LVGGMTR+PKVQ+ V ++F
Sbjct: 344 MKLTRAQFEGIVTDLIRRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLF 403
Query: 403 GKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTT 462
G++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG+FT+LINRNTT
Sbjct: 404 GRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTT 463
Query: 463 IPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFD 522
IPTKKSQVFSTAAD QTQV IKV QGEREMA DNK LG+F L+GIPPAPRG+PQIEVTFD
Sbjct: 464 IPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFD 523
Query: 523 IDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRN 582
IDANGIV VSAKDK TG+EQQI I+SSGGLS+ +IE MVK AE +A+ D+ +K ++ N
Sbjct: 524 IDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVN 583
Query: 583 NADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGED 625
A+ I+ E + E+++++P E ++++ +S +R+ +A +D
Sbjct: 584 MAEGIIHDTETKMEEFKDQLPAEECNKLKEEISKMRELLARKD 626
|
|
| MGI|MGI:96245 Hspa9 "heat shock protein 9" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 2037 (722.1 bits), Expect = 1.0e-210, P = 1.0e-210
Identities = 389/583 (66%), Positives = 483/583 (82%)
Query: 44 RPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGT 103
R +++ V+G+DLGTTNSCVAVMEGK KV+EN+EG RTTPSVVAF GE LVG
Sbjct: 44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGM 103
Query: 104 PAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSP 163
PAKRQAVTNP NT + TKRLIGRR++D + QK+ K VPFKIV A NGDAWVEA+G+ YSP
Sbjct: 104 PAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDTKNVPFKIVRASNGDAWVEAHGKLYSP 163
Query: 164 SQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEP 223
SQIGAFVL KMKETAE+YLG + AVITVPAYFND+QRQATKDAG+I+GL+V R+INEP
Sbjct: 164 SQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEP 223
Query: 224 TAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282
TAAAL+YG++ E +IAV+DLGGGTFD+S+LEI GVFEVK+TNGDTFLGGEDFD ALL
Sbjct: 224 TAAALAYGLDKSEDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALL 283
Query: 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLN 342
+V EFKR +DL++D +ALQR+RE+AEKAK ELSS+ QT+INLP++T DASG KHLN
Sbjct: 284 RHIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDASGPKHLN 343
Query: 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF 402
+ LTR++FE +V LI+RT APC+ ++DA ++ D+ EV+LVGGMTR+PKVQ+ V ++F
Sbjct: 344 MKLTRAQFEGIVTDLIKRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLF 403
Query: 403 GKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTT 462
G++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG+FT+LINRNTT
Sbjct: 404 GRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTT 463
Query: 463 IPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFD 522
IPTKKSQVFSTAAD QTQV IKV QGEREMA DNK LG+F L+GIPPAPRG+PQIEVTFD
Sbjct: 464 IPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFD 523
Query: 523 IDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRN 582
IDANGIV VSAKDK TG+EQQI I+SSGGLS+ +IE MVK AE +A+ D+ +K ++ N
Sbjct: 524 IDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVN 583
Query: 583 NADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGED 625
A+ I+ E + E+++++P + ++++ +S +R +AG+D
Sbjct: 584 MAEGIIHDTETKMEEFKDQLPADECNKLKEEISKMRALLAGKD 626
|
|
| UNIPROTKB|F1RGJ3 HSPA9 "Stress-70 protein, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 2036 (721.8 bits), Expect = 1.3e-210, P = 1.3e-210
Identities = 387/583 (66%), Positives = 485/583 (83%)
Query: 44 RPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGT 103
R +++ V+G+DLGTTNSCVAVMEGK KV+EN+EG RTTPSVVAF GE LVG
Sbjct: 44 RDYASEAIKGAVVGIDLGTTNSCVAVMEGKQAKVLENAEGARTTPSVVAFTADGERLVGM 103
Query: 104 PAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSP 163
PAKRQAVTNP NT + TKRLIGRR++D + QK++K VPFKIV A NGDAWVEA+G+ YSP
Sbjct: 104 PAKRQAVTNPNNTFYATKRLIGRRYDDPEVQKDIKNVPFKIVRASNGDAWVEAHGKLYSP 163
Query: 164 SQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEP 223
SQIGAFVL KMKETAE+YLG + AVITVPAYFND+QRQATKDAG+I+GL+V R+INEP
Sbjct: 164 SQIGAFVLMKMKETAENYLGHTAKNAVITVPAYFNDSQRQATKDAGQISGLNVLRVINEP 223
Query: 224 TAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282
TAAAL+YG++ E +IAV+DLGGGTFD+S+LEI GVFEVK+TNGDTFLGGEDFD ALL
Sbjct: 224 TAAALAYGLDKSEDKIIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALL 283
Query: 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLN 342
++V EFKR +DL++D +ALQR+RE+AEKAK ELSS+ QT+INLP++T DASG KHLN
Sbjct: 284 RYIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYLTMDASGPKHLN 343
Query: 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF 402
+ LTR++FE +V LI+RT APC+ ++DA ++ D+ EV+LVGGMTR+PKVQ+ V ++F
Sbjct: 344 MKLTRAQFEGIVTDLIKRTIAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLF 403
Query: 403 GKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTT 462
G++PSK VNPDEAVA+GAAIQGG+L GDV ++LLLDVTPLSLGIETLGG+FT+LINRNTT
Sbjct: 404 GRAPSKAVNPDEAVAIGAAIQGGVLAGDVTDVLLLDVTPLSLGIETLGGVFTKLINRNTT 463
Query: 463 IPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFD 522
IPTKKSQVFSTAAD QTQV IKV QGEREMA DNK LG+F L+GIPPAPRG+PQIEVTFD
Sbjct: 464 IPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLVGIPPAPRGVPQIEVTFD 523
Query: 523 IDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRN 582
IDANGIV VSAKDK TG+EQQI I+SSGGLS+ +IE MVK AE +A+ D+ +K ++ N
Sbjct: 524 IDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVN 583
Query: 583 NADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGED 625
A+ I+ E + E+++++P + ++++ +S +R+ ++ +D
Sbjct: 584 MAEGIIHDTESKMEEFKDQLPADECNKLKEEISKMRELLSRKD 626
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q1MN11 | DNAK_RHIL3 | No assigned EC number | 0.6719 | 0.9127 | 0.9670 | yes | no |
| Q98DD1 | DNAK_RHILO | No assigned EC number | 0.6902 | 0.8772 | 0.9294 | yes | no |
| Q3SW76 | DNAK_NITWN | No assigned EC number | 0.6936 | 0.8772 | 0.9412 | yes | no |
| Q6G1F9 | DNAK_BARQU | No assigned EC number | 0.6704 | 0.9171 | 0.9841 | yes | no |
| Q08276 | HSP7M_SOLTU | No assigned EC number | 0.8313 | 1.0 | 0.9912 | N/A | no |
| B1ZGR1 | DNAK_METPB | No assigned EC number | 0.6755 | 0.8831 | 0.9342 | yes | no |
| P94317 | DNAK_BRAJA | No assigned EC number | 0.6885 | 0.8772 | 0.9368 | yes | no |
| A8IPT1 | DNAK_AZOC5 | No assigned EC number | 0.6656 | 0.9097 | 0.9746 | yes | no |
| B5ZWQ2 | DNAK_RHILW | No assigned EC number | 0.6703 | 0.9186 | 0.9718 | yes | no |
| Q21CI2 | DNAK_RHOPB | No assigned EC number | 0.6801 | 0.8772 | 0.9382 | yes | no |
| A9ILH7 | DNAK_BART1 | No assigned EC number | 0.6688 | 0.9171 | 0.9841 | yes | no |
| Q57AD7 | DNAK_BRUAB | No assigned EC number | 0.6634 | 0.9171 | 0.9733 | yes | no |
| B2IBR4 | DNAK_BEII9 | No assigned EC number | 0.6789 | 0.9127 | 0.9762 | yes | no |
| B3Q972 | DNAK_RHOPT | No assigned EC number | 0.6885 | 0.8772 | 0.9397 | yes | no |
| A0L4Z2 | DNAK_MAGSM | No assigned EC number | 0.6683 | 0.8772 | 0.9081 | yes | no |
| Q8YE76 | DNAK_BRUME | No assigned EC number | 0.6618 | 0.9171 | 0.9733 | yes | no |
| Q11KJ6 | DNAK_MESSB | No assigned EC number | 0.6768 | 0.9171 | 0.9748 | yes | no |
| Q01899 | HSP7M_PHAVU | No assigned EC number | 0.8948 | 0.9970 | 0.9985 | N/A | no |
| Q2RNE6 | DNAK_RHORT | No assigned EC number | 0.6492 | 0.9171 | 0.9702 | yes | no |
| Q2J320 | DNAK_RHOP2 | No assigned EC number | 0.6650 | 0.9156 | 0.9778 | yes | no |
| Q05981 | DNAK_BRUO2 | No assigned EC number | 0.6634 | 0.9171 | 0.9733 | yes | no |
| A6UEY0 | DNAK_SINMW | No assigned EC number | 0.6756 | 0.9186 | 0.9687 | yes | no |
| P37900 | HSP7M_PEA | No assigned EC number | 0.8870 | 0.9955 | 0.9970 | N/A | no |
| P42374 | DNAK_RHIME | No assigned EC number | 0.6756 | 0.9186 | 0.9687 | yes | no |
| Q2KDW6 | DNAK_RHIEC | No assigned EC number | 0.6634 | 0.9186 | 0.9733 | yes | no |
| A7HZ39 | DNAK_PARL1 | No assigned EC number | 0.6624 | 0.9171 | 0.9702 | yes | no |
| A1UUC3 | DNAK_BARBK | No assigned EC number | 0.6581 | 0.9171 | 0.9825 | yes | no |
| A9W6R7 | DNAK_METEP | No assigned EC number | 0.6555 | 0.9171 | 0.9702 | yes | no |
| B6JCI3 | DNAK_OLICO | No assigned EC number | 0.6919 | 0.8772 | 0.9309 | yes | no |
| Q2VYT1 | DNAK_MAGSA | No assigned EC number | 0.6986 | 0.8772 | 0.9236 | yes | no |
| Q1QRU1 | DNAK_NITHX | No assigned EC number | 0.6868 | 0.8772 | 0.9382 | yes | no |
| B8IHL3 | DNAK_METNO | No assigned EC number | 0.6592 | 0.9127 | 0.9686 | yes | no |
| Q9LDZ0 | HSP7J_ARATH | No assigned EC number | 0.8255 | 1.0 | 0.9912 | yes | no |
| B7KSZ4 | DNAK_METC4 | No assigned EC number | 0.6555 | 0.9171 | 0.9702 | yes | no |
| B1LZ51 | DNAK_METRJ | No assigned EC number | 0.6453 | 0.9171 | 0.9717 | yes | no |
| B8EIP9 | DNAK_METSB | No assigned EC number | 0.6655 | 0.9171 | 0.9779 | yes | no |
| Q8GUM2 | HSP7I_ARATH | No assigned EC number | 0.8064 | 0.9940 | 0.9853 | no | no |
| Q13E60 | DNAK_RHOPS | No assigned EC number | 0.6570 | 0.9156 | 0.9778 | yes | no |
| Q6G554 | DNAK_BARHE | No assigned EC number | 0.6672 | 0.9171 | 0.9841 | yes | no |
| B0UR84 | DNAK_METS4 | No assigned EC number | 0.6818 | 0.8772 | 0.9280 | yes | no |
| B3PXH3 | DNAK_RHIE6 | No assigned EC number | 0.6624 | 0.9186 | 0.9718 | yes | no |
| Q07US6 | DNAK_RHOP5 | No assigned EC number | 0.6818 | 0.8772 | 0.9368 | yes | no |
| B6IVA4 | DNAK_RHOCS | No assigned EC number | 0.6629 | 0.9171 | 0.9687 | yes | no |
| A7IC65 | DNAK_XANP2 | No assigned EC number | 0.6634 | 0.9156 | 0.9809 | yes | no |
| Q8FXX2 | DNAK_BRUSU | No assigned EC number | 0.6618 | 0.9171 | 0.9733 | yes | no |
| Q6NCY4 | DNAK_RHOPA | No assigned EC number | 0.6885 | 0.8772 | 0.9397 | yes | no |
| Q0BW82 | DNAK_GRABC | No assigned EC number | 0.6404 | 0.9171 | 0.9810 | yes | no |
| P50019 | DNAK_AGRT5 | No assigned EC number | 0.6682 | 0.9186 | 0.9810 | yes | no |
| B9JZ87 | DNAK_AGRVS | No assigned EC number | 0.6587 | 0.9142 | 0.9686 | yes | no |
| O05700 | DNAK_RHOS7 | No assigned EC number | 0.6885 | 0.8772 | 0.9397 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 676 | |||
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 0.0 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 0.0 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 0.0 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 0.0 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-168 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-166 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-156 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-130 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-122 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-118 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-117 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 3e-99 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-88 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 6e-79 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 2e-76 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 3e-71 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 8e-69 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 5e-66 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 6e-63 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 2e-36 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 2e-22 | |
| PLN00130 | 213 | PLN00130, PLN00130, succinate dehydrogenase (SDH3) | 2e-15 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 4e-12 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 5e-08 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 2e-07 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 3e-07 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 3e-07 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 3e-07 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 9e-07 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 3e-06 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 1e-05 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 1e-05 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 2e-05 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 4e-05 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 0.002 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 1143 bits (2959), Expect = 0.0
Identities = 412/624 (66%), Positives = 503/624 (80%), Gaps = 4/624 (0%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+IG+DLGTTNSCVAVMEG PKVIEN+EG RTTPSVVAF + GE LVG PAKRQAVTNP
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPE 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NT+F KRL+GRR D + QK++K+VP+KIV A NGDAWVE +G++Y+P +I A +L K+
Sbjct: 64 NTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKL 121
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN- 233
K+ AE YLG+ V+EAVITVPAYFNDAQRQATKDAG+IAGL+V RIINEPTAAAL+YG++
Sbjct: 122 KKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181
Query: 234 NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
+ I V+DLGGGTFDVS+LEI +GVFEV +TNGDT LGG+DFD ++++L EFK+
Sbjct: 182 KGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKEN 241
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
IDL +DK+ALQRL+E+AEKAKIELSS QTEINLPFITADASG KHL I LTR+KFE L
Sbjct: 242 GIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEEL 301
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
L+ERT PCK LKDA +++ D+DEV+LVGG TR+P VQE+V E FGK P+KGVNPD
Sbjct: 302 TEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPD 361
Query: 414 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 473
E VA+GAAIQGG+L GDVK++LLLDVTPLSLGIETLGG+ T+LI RNTTIPTKKSQVFST
Sbjct: 362 EVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFST 421
Query: 474 AADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSA 533
AADNQ V I VLQGEREMAADNK+LG F L GIPPAPRG+PQIEVTFDIDANGIV VSA
Sbjct: 422 AADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSA 481
Query: 534 KDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEK 593
KDK TGKEQ ITI +S GLS+ EIE+MVK+AE +A+ D++RK L++ RN AD+ IY EK
Sbjct: 482 KDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEK 541
Query: 594 SLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM-AGGSS 652
+L E +K+P + ++IE A+ +L++A+ GED + IKAK + +A K+G+ M +
Sbjct: 542 TLKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQAQA 601
Query: 653 DNSASGGSQGGDQAPEAEYEEVKK 676
A+G + D +AE+EEVK
Sbjct: 602 AQGAAGAAAKDDDVVDAEFEEVKD 625
|
Length = 627 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 975 bits (2523), Expect = 0.0
Identities = 399/599 (66%), Positives = 479/599 (79%), Gaps = 9/599 (1%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG+DLGTTNSCVAVMEG P+VI N EG RTTPSVVAF K E LVG AKRQAVTNP
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEAN--GQQYSPSQIGAFVLT 172
NT+F KRLIGR+F+D Q+++K VP+K+V PNGDA VE G+ ++P QI A VL
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 173 KMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGM 232
K+KETAE+YLG+ V++AVITVPAYFNDAQRQATKDAGRIAGL+V RIINEPTAAAL+YG+
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 233 N--NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290
+ +KE + VFDLGGGTFDVS+LEI +GVFEV ATNGDT LGGEDFDN L++ V EFK
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239
Query: 291 RTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKF 350
+ IDLS+D ALQRLRE+AEKAKIELSS +QTEINLPFITA A G K ++ TLTR+KF
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSS-NQTEINLPFITAMADG-KDVSGTLTRAKF 297
Query: 351 ETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGV 410
E L L ERT P + LKDA ++ ++DEV+LVGG TR+P VQE+V E FGK PSKGV
Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGV 357
Query: 411 NPDEAVALGAAIQGGILRG--DVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKS 468
NPDEAVA+GAA+Q G+L G DVK++LLLDVTPLSLGIETLGG+ T+LI RNTTIPTKKS
Sbjct: 358 NPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKS 417
Query: 469 QVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGI 528
Q+FSTAADNQT V I+V QGEREMA DNK LG FEL GIPPAPRG+PQIEVTFDIDANGI
Sbjct: 418 QIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGI 477
Query: 529 VTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTI 588
+TVSAKDK TGKEQ+ITI +S GLS+ EIE+MVK+AE +A D++RK I+ +N A+ +
Sbjct: 478 LTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYV 537
Query: 589 YSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM 647
YS+EKSL E +K+P K++E+A+ L++ + GED + I+AK + K V IG+ M
Sbjct: 538 YSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGERM 596
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 964 bits (2493), Expect = 0.0
Identities = 410/621 (66%), Positives = 509/621 (81%), Gaps = 1/621 (0%)
Query: 51 AGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAV 110
A D++G+DLGTTNSCVA+MEG PKVIENSEG RTTPSVVAF + G+ LVG AKRQAV
Sbjct: 39 ATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAV 98
Query: 111 TNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFV 170
TNP NT+F TKRLIGRR+++ T+KE K++P+KIV A NGDAW+EA G++YSPSQIGAFV
Sbjct: 99 TNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFV 158
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
L KMKETAESYLG+ V +AVITVPAYFND+QRQATKDAG+IAGLDV RIINEPTAAAL++
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 231 GMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289
GM+ +G IAV+DLGGGTFD+S+LEI GVFEVKATNG+T LGGEDFD +L +L++EF
Sbjct: 219 GMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEF 278
Query: 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349
K+ + IDL +DKLALQRLRE+AE AKIELSS +QTEINLPFITAD SG KHL I L+R+K
Sbjct: 279 KKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAK 338
Query: 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKG 409
E L + L+++T PC+ C+KDA + ++++V+LVGGMTR+PKV E V +IFGK PSKG
Sbjct: 339 LEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKG 398
Query: 410 VNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQ 469
VNPDEAVA+GAAIQ G+L+G++K+LLLLDVTPLSLGIETLGG+FTRLINRNTTIPTKKSQ
Sbjct: 399 VNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 470 VFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529
VFSTAADNQTQVGIKV QGEREMAADNK LG+F+L+GIPPAPRG+PQIEVTFD+DANGI+
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIY 589
+SA DK+TGK+Q+ITI+SSGGLS+ EIEKMVKEAE + ++D+++K L+D +N A+T IY
Sbjct: 519 NISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIY 578
Query: 590 SIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649
S+EK L + ++KI E++ ++ LR ++ ED+D IK K +A KI Q
Sbjct: 579 SVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAYK 638
Query: 650 GSSDNSASGGSQGGDQAPEAE 670
+ ++ + E +
Sbjct: 639 QGNSDNQQSEQSTNSEESEEK 659
|
Length = 663 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 963 bits (2492), Expect = 0.0
Identities = 393/595 (66%), Positives = 483/595 (81%), Gaps = 5/595 (0%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+IG+DLGTTNSCVAVMEG P VI N+EG RTTPSVVAF + GE LVG PAKRQAVTNP
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPE 61
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NT++ KR +GRRF+ + +E K VP+K+V GD V+ +G++Y+P +I A +L K+
Sbjct: 62 NTIYSIKRFMGRRFD--EVTEEAKRVPYKVV-GDGGDVRVKVDGKEYTPQEISAMILQKL 118
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN- 233
K+ AE+YLG+ V+EAVITVPAYFNDAQRQATKDAG+IAGL+V RIINEPTAAAL+YG++
Sbjct: 119 KKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 178
Query: 234 -NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRT 292
K+ I VFDLGGGTFDVS+LEI +GVFEV +T GDT LGG+DFD ++++L EFK+
Sbjct: 179 SKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKE 238
Query: 293 ERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFET 352
E IDLS+DK+ALQRL+E+AEKAKIELSS TEINLPFITADASG KHL +TLTR+KFE
Sbjct: 239 EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEE 298
Query: 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNP 412
L L+ERTK P + LKDA ++ D+DEV+LVGG TR+P VQE+V + FGK P+K VNP
Sbjct: 299 LTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNP 358
Query: 413 DEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFS 472
DE VA+GAAIQGG+L+GDVK++LLLDVTPLSLGIETLGG+ T+LI RNTTIPTKKSQVFS
Sbjct: 359 DEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFS 418
Query: 473 TAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVS 532
TAADNQ V I VLQGER MAADNK+LG FEL GIPPAPRG+PQIEVTFDIDANGI+ VS
Sbjct: 419 TAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVS 478
Query: 533 AKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIE 592
AKDK TGKEQ ITI +S GLSE EIE+MVKEAE +A+ D++RK I+ RNNAD+ Y E
Sbjct: 479 AKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAE 538
Query: 593 KSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM 647
K+L E +K+P E ++IE AV++L++A+ GED++ IKAK + +A+ K+ + M
Sbjct: 539 KTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQKLAEAM 593
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 817 bits (2111), Expect = 0.0
Identities = 356/609 (58%), Positives = 454/609 (74%), Gaps = 7/609 (1%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG+DLGTTNSCVAV+EG P VI NSEG RTTPS+V F + G+ LVG AKRQAVTN
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAE 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NT++ KR IGRR++D T++E VP+ V + V+ G+ Y+P +I A +L K+
Sbjct: 64 NTVYSIKRFIGRRWDD--TEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKL 121
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN- 233
K+ AE+YLG+ V++AVITVPAYF DAQRQATKDAG IAGL+V RIINEPTAAAL+YG++
Sbjct: 122 KQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDK 181
Query: 234 -NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRT 292
++E LI VFDLGGGTFDVS+L++ +GVFEVKAT G+ LGG+DFDN ++++LV F++
Sbjct: 182 QDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQ 241
Query: 293 ERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFET 352
E IDLSQDK+ALQRLRE+AEKAKIELSS T INLPFITAD +G KHL + LTR+KFE
Sbjct: 242 EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEE 301
Query: 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKSPSKGVN 411
L L+E T P + LKDA + +D+D V+LVGG TR+P VQE + + F GK P + VN
Sbjct: 302 LTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVN 361
Query: 412 PDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVF 471
PDEAVALGAAIQ G+L G+VK+LLLLDVTPLSLGIETLG +FT++I RNTTIPT KSQVF
Sbjct: 362 PDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVF 421
Query: 472 STAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531
STA D QT V I VLQGER MA DNK+LG+F L GIPPAPRG+PQIEV+F+ID NGI+ V
Sbjct: 422 STATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKV 481
Query: 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSI 591
SA+D+ TG+EQ I I ++GGLS +EIE+M +EAE +A+ D+ RK LI+++N AD+ +YS
Sbjct: 482 SAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSY 541
Query: 592 EKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDI--DGIKAKLDAANKAVSKIGQHMAG 649
E +L E E I E+ + E V L A+ +I + +K +L+ +A+ IG +
Sbjct: 542 ESTLKENGELISEELKQRAEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVYQ 601
Query: 650 GSSDNSASG 658
+
Sbjct: 602 QGGSQTTDT 610
|
Length = 653 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 808 bits (2089), Expect = 0.0
Identities = 354/606 (58%), Positives = 465/606 (76%), Gaps = 5/606 (0%)
Query: 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTN 112
V+G+DLGTTNS VAVMEG P VI N+EG RTTPS+VA+ +KG+LLVG AKRQAV N
Sbjct: 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVIN 61
Query: 113 PANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVE--ANGQQYSPSQIGAFV 170
P NT + KR IGR+F+ + +E K V +K+ NG+ +E A + +SP +I A V
Sbjct: 62 PENTFYSVKRFIGRKFS--EISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQV 119
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
L K+ E A YLG++V++AVITVPAYFND+QRQATKDAG+IAGL+V RIINEPTAA+L+Y
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 231 GMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289
G++ K I VFDLGGGTFDVS+LE+ +GVFEV +T+GDT LGG+DFD ++ +L+ EF
Sbjct: 180 GLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEF 239
Query: 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349
K+ E IDLS+D+ ALQRL E+AEKAKIELS+ +QTEINLPFITA +G KH+ TLTR+K
Sbjct: 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAK 299
Query: 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKG 409
FE L + LI R + P +N LKDA + D+DEV+LVGG TR+P +QE+V ++ GK P++
Sbjct: 300 FEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQS 359
Query: 410 VNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQ 469
VNPDE VA+GAA+Q G+L G+VK++LLLDVTPLSLG+ETLGG+ T++I RNTTIPTKKS+
Sbjct: 360 VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSE 419
Query: 470 VFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529
VFSTA DNQT V I VLQGERE+A DNK+LG F L GIPPAPRG+PQIEVTFDIDANGI+
Sbjct: 420 VFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGIL 479
Query: 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIY 589
+V+AKDK TGKEQ ITI+ + L + E+E+MVKEAE +A D+E++ ID++N A++ Y
Sbjct: 480 SVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCY 539
Query: 590 SIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649
EK L E ++KI E ++IE+ + LR+A+ ++ + IK+ L+ KA+ +IG+ +
Sbjct: 540 QAEKQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYS 599
Query: 650 GSSDNS 655
+S
Sbjct: 600 STSTTD 605
|
Length = 621 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 785 bits (2028), Expect = 0.0
Identities = 406/651 (62%), Positives = 512/651 (78%), Gaps = 12/651 (1%)
Query: 35 ASANWASLARPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFN 94
A+A+ A LAR S + G DVIGVDLGTT SCVA M+G +V+ENSEG RTTPSVVAF
Sbjct: 10 AAASAARLARHESQKVQG-DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAF- 67
Query: 95 QKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWV 154
+ E LVG AKRQA+TNP +T + KRLIGRRF D QK++K VP+KIV A NGDAWV
Sbjct: 68 KGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWV 127
Query: 155 E-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAG 213
+ NG+QYSPSQIGAFVL KMKETAE++LG VS AV+T PAYFNDAQRQATKDAG IAG
Sbjct: 128 QDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAG 187
Query: 214 LDVQRIINEPTAAALSYGMN-NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFL 272
L+V R++NEPTAAAL+YGM+ K+ LIAV+DLGGGTFD+SVLEI+ GVFEVKATNGDT L
Sbjct: 188 LNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHL 247
Query: 273 GGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFIT 332
GGEDFD AL ++++ EF++T IDLS++++ALQR+RE+AEKAK ELSS +TE+NLPFIT
Sbjct: 248 GGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFIT 307
Query: 333 ADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVP 392
A+A GA+H+ + ++RSKFE + LIER+ APCK C+KDA + +K++++V+LVGGMTR+P
Sbjct: 308 ANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMP 367
Query: 393 KVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGI 452
KV E V + F K P +GVNPDEAVALGAA GG+LRGDVK L+LLDVTPLSLGIETLGG+
Sbjct: 368 KVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGV 427
Query: 453 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPR 512
FTR+I +NTTIPTKKSQ FSTAADNQTQVGIKV QGEREMAADN+ +G+F+L+GIPPAPR
Sbjct: 428 FTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPR 487
Query: 513 GIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQ 572
G+PQIEVTFDIDANGI V+AKDKATGK Q ITI ++GGLS+ +IE+M++++E HA+ D+
Sbjct: 488 GVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADR 547
Query: 573 ERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDI--DGIK 630
++ L+++RNNA+T + + E+ LGE++ E + ++ V++LRKAM ++ D +
Sbjct: 548 VKRELVEVRNNAETQLTTAERQLGEWKYVSDAE-KENVKTLVAELRKAMENPNVAKDDLA 606
Query: 631 AKLDAANKAVSKIG-----QHMAGGSSDNSASGGSQGGDQAPEAEYEEVKK 676
A D KAV + G Q A S +S SG Q Q + + E KK
Sbjct: 607 AATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQQQQQQQNSEEKK 657
|
Length = 657 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 757 bits (1955), Expect = 0.0
Identities = 349/662 (52%), Positives = 464/662 (70%), Gaps = 18/662 (2%)
Query: 28 GNVKPSWASANWASLARPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTT 87
+K N A R V+G+DLGTTNS VA MEG P ++ N+EG RTT
Sbjct: 14 AFLKMGKRRGNGARRRAGGPLRVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTT 73
Query: 88 PSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNA 147
PSVVA+ + G+ LVG AKRQAV NP NT F KR IGR+ + + +E K V +++V
Sbjct: 74 PSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--EVDEESKQVSYRVVRD 131
Query: 148 PNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQAT 205
NG+ ++ A G+Q++ +I A VL K+ + A +L V++AVITVPAYFND+QR AT
Sbjct: 132 ENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTAT 191
Query: 206 KDAGRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVK 264
KDAGRIAGL+V RIINEPTAA+L+YG K I VFDLGGGTFDVSVLE+ +GVFEV
Sbjct: 192 KDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVL 251
Query: 265 ATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQT 324
+T+GDT LGG+DFD ++++L S FK+ E IDL +DK ALQRL E+AEKAKIELSS +QT
Sbjct: 252 STSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQT 311
Query: 325 EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLL 384
I+LPFITA A G KH++ TLTR+KFE L + L++R K P +N L+DA ++ KD+DEV+L
Sbjct: 312 SISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVIL 371
Query: 385 VGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSL 444
VGG TR+P VQE+V ++ GK P+ VNPDE VALGAA+Q G+L G+V +++LLDVTPLSL
Sbjct: 372 VGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSL 431
Query: 445 GIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFEL 504
G+ETLGG+ T++I RNTT+PT KS+VFSTAAD QT V I VLQGERE DNK+LG F L
Sbjct: 432 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRL 491
Query: 505 MGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEA 564
GIPPAPRG+PQIEV FDIDANGI++VSA DK TGK+Q ITI + L + E+E+MV+EA
Sbjct: 492 DGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEA 551
Query: 565 ELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGE 624
E A+ D+E++ +D +N AD+ +Y EK L E +K+P +V +++E + +L+ A+A
Sbjct: 552 EKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASG 611
Query: 625 DIDGIKAKLDAANKAVSKIGQHM-------------AGGSSDNSASGGSQGGDQAPEAEY 671
+K + A N+ V +IGQ + G + +S+S GD +A++
Sbjct: 612 STQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDADF 671
Query: 672 EE 673
+
Sbjct: 672 TD 673
|
Length = 673 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 733 bits (1894), Expect = 0.0
Identities = 283/377 (75%), Positives = 329/377 (87%), Gaps = 1/377 (0%)
Query: 52 GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVT 111
VIG+DLGTTNSCVAVMEGK PKVIEN+EG RTTPSVVAF + GE LVG PAKRQAVT
Sbjct: 1 KGAVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVT 60
Query: 112 NPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVL 171
NP NTL+ TKRLIGRRF+D + QK++K VP+KIV A NGDAWVEA+G++YSPSQIGAFVL
Sbjct: 61 NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHGKKYSPSQIGAFVL 120
Query: 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG 231
KMKETAE+YLGK V AVITVPAYFND+QRQATKDAG+IAGL+V R+INEPTAAAL+YG
Sbjct: 121 MKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYG 180
Query: 232 MNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290
++ K+ +IAV+DLGGGTFD+S+LEI GVFEVK+TNGDTFLGGEDFDNALL LV EFK
Sbjct: 181 LDKKDDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEFK 240
Query: 291 RTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKF 350
+ + IDL++D +ALQRLRE+AEKAKIELSS+ QT+INLP+ITADASG KHLN+ LTR+KF
Sbjct: 241 KEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKF 300
Query: 351 ETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGV 410
E+LV LI+RT PCK LKDA ++ D+ EV+LVGGMTR+PKVQE V EIFGK PSKGV
Sbjct: 301 ESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPSKGV 360
Query: 411 NPDEAVALGAAIQGGIL 427
NPDEAVA+GAAIQGG+L
Sbjct: 361 NPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 741 bits (1915), Expect = 0.0
Identities = 357/593 (60%), Positives = 441/593 (74%), Gaps = 27/593 (4%)
Query: 55 VIGVDLGTTNSCVAVMEGKN-PKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNP 113
IG+DLGTTNS VAVM G PKVIEN+EG R TPSVVAF++ GE+LVG AKRQAV NP
Sbjct: 7 AIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNP 66
Query: 114 ANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTK 173
NT+F KR IGR N + VE +G++Y+P +I A +LTK
Sbjct: 67 ENTIFSIKRKIGRGSNGLK-------------------ISVEVDGKKYTPEEISAMILTK 107
Query: 174 MKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN 233
+KE AE+YLG+ V++AVITVPAYFNDAQRQATKDA RIAGL+V R+INEPTAAAL+YG++
Sbjct: 108 LKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLD 167
Query: 234 -NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRT 292
KE + V+DLGGGTFDVS+LEI +GVFEV AT GD LGG+DFDNAL+++LV EFK
Sbjct: 168 KGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGK 227
Query: 293 ERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFET 352
IDL DK ALQRLRE+AEKAKIELSS +QT INLP I D L LTR+KFE
Sbjct: 228 GGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEE 283
Query: 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNP 412
L+ L+ERT P + LKDA + D+D V+LVGG TR+P VQE+V E FGK P K +NP
Sbjct: 284 LILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINP 343
Query: 413 DEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFS 472
DEAVALGAAIQ +L G+V ++LLLDV PLSLGIETLGG+ T +I RNTTIP KKSQ FS
Sbjct: 344 DEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFS 403
Query: 473 TAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVS 532
TAAD QT V I V QGEREMAADNK+LG FEL GIPPAPRG+PQIEVTFDIDANGI+ V+
Sbjct: 404 TAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVT 463
Query: 533 AKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIE 592
AKD TGKEQ ITI++S GLS+ EIE+MV++AE +A D++ + L++ RN A++ IYS+E
Sbjct: 464 AKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLE 523
Query: 593 KSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQ 645
K+L E K+ E ++IE+A++DL +A+ G + + IKAK++ + K+ +
Sbjct: 524 KALKEI-VKVSEEEKEKIEEAITDLEEALEG-EKEEIKAKIEELQEVTQKLAE 574
|
Length = 579 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 739 bits (1910), Expect = 0.0
Identities = 312/582 (53%), Positives = 420/582 (72%), Gaps = 9/582 (1%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
++G+DLGTTNS VAVMEG P VI N+EG RTTPSVV F + GELLVG A+RQ V NP
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQ 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVE--ANGQQYSPSQIGAFVLT 172
NT + KR IGRR+++ E K VP+ I G+ ++ ++++P ++ A +L
Sbjct: 64 NTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILR 121
Query: 173 KMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGM 232
K+ + A YLG+ V+ AVITVPAYFND+QRQAT+DAGRIAGL+V+RI+NEPTAAAL+YG+
Sbjct: 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGL 181
Query: 233 NNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291
+ + VFDLGGGTFDVS+LE+ NGVFEVKAT+GDT LGG DFD ++++L +F
Sbjct: 182 DRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLE 241
Query: 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFE 351
E IDL +D+ ALQRL E+AEKAKIELS S T+I+LPFITA G KH+ L R +FE
Sbjct: 242 KEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFE 301
Query: 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVN 411
+L L++R P K LKDA ++ +D+DEV+LVGG TR+P VQ++V + + P++ VN
Sbjct: 302 SLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVN 361
Query: 412 PDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVF 471
PDE VA+GAAIQ GIL G++K+LLLLDVTPLSLG+ET+GG+ +LI RNTTIP ++S VF
Sbjct: 362 PDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVF 421
Query: 472 STAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531
ST+ +NQ+ V I V QGEREMA+DNK+LG F+L GIPPAPRG+PQ++V FDIDANGI+ V
Sbjct: 422 STSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQV 481
Query: 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSI 591
SA D+ TG+EQ +TI+ + LSE E+ +M++EAE A D+ R+ I+ RN A T I
Sbjct: 482 SATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQA 541
Query: 592 EKSLGEYREKIPGEVA----KEIEDAVSDLRKAMAGEDIDGI 629
E+ L + + A + +E A+ D++ ++ +D +
Sbjct: 542 ERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDREL 583
|
Length = 668 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 646 bits (1668), Expect = 0.0
Identities = 318/642 (49%), Positives = 416/642 (64%), Gaps = 38/642 (5%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPAN 115
IG+DLGTT SCV V + +N ++I N +G RTTPS VAF E L+G AK Q NP N
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPEN 65
Query: 116 TLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQ----QYSPSQIGAFVL 171
T+F KRLIGR+F+D+ Q +MK PFK+ + +E Q + P +I + VL
Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125
Query: 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG 231
KMKE AE+YLGK V +AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA++YG
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 232 MNNK---EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288
++ K E + +FDLGGGTFDVS+L I +G+FEVKAT GDT LGGEDFDN L+EF V +
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQD 245
Query: 289 FKRTER-IDLSQDKLALQRLRESAEKAKIELSSTSQT--EINLPFITADASGAKHLNITL 345
FKR R DLS ++ AL+RLR E+AK LSS++Q EI+ F D N+T+
Sbjct: 246 FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGID------YNVTI 299
Query: 346 TRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GK 404
+R++FE L T P + LKDA + + V EV+LVGG TR+PKVQ ++ + F GK
Sbjct: 300 SRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGK 359
Query: 405 SPSKGVNPDEAVALGAAIQGGILRGD----VKELLLLDVTPLSLGIETLGGIFTRLINRN 460
P K +NPDEAVA GAA+Q IL G+ V++LLLLDVTPLSLG+ET GG+ T+LI RN
Sbjct: 360 EPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERN 419
Query: 461 TTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVT 520
TTIPTKKSQ+F+T ADNQ V I+V +GER M DN LG+F L GIPPAPRG+PQIEVT
Sbjct: 420 TTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVT 479
Query: 521 FDIDANGIVTVSAKDKATGKEQQITIRSSGG-LSESEIEKMVKEAELHAQRDQERKTLID 579
FDIDANGI+ VSA+DK+TGK +ITI + G LS+++I++MV EAE + D+ + ++
Sbjct: 480 FDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVE 539
Query: 580 IRNNADTTIYSIEKSLGE--YREKIPGE----VAKEIEDAVSDLRKAMAGEDIDGIKAKL 633
+N + YS++ +L + + K+ + K I++A+ L K E + + K
Sbjct: 540 AKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEK-EEFEHKQ 598
Query: 634 DAANKAVSKI--------GQHMAGGSSDNSASGGSQGGDQAP 667
+ I G M GG G G A
Sbjct: 599 KEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAG 640
|
Length = 653 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 633 bits (1635), Expect = 0.0
Identities = 247/376 (65%), Positives = 309/376 (82%), Gaps = 6/376 (1%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+IG+DLGTTNSCVAVMEG P VI N+EG+RTTPSVVAF +KGE LVG PAKRQAVTNP
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPE 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVE--ANGQQYSPSQIGAFVLT 172
NT+F KR +GR+F++ + ++++ P+K+V G+ VE +NG+ Y+P +I A +L
Sbjct: 64 NTIFSIKRFMGRKFDEVEEERKV---PYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQ 120
Query: 173 KMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGM 232
K+KE AE+YLG+ V+EAVITVPAYFND+QRQATKDAG+IAGL+V RIINEPTAAAL+YG+
Sbjct: 121 KLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180
Query: 233 NNK-EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291
+ K I V+DLGGGTFDVS+LEI +GVFEV ATNGDT LGG+DFD ++++LV EFK+
Sbjct: 181 DKKGNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKK 240
Query: 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFE 351
E IDL +DK+ALQRL+E+AEKAKIELSS ++TEINLPFITADA+G KHL +TLTR+KFE
Sbjct: 241 EEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFE 300
Query: 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVN 411
L L+ERT P K LKDA ++ D+DEV+LVGG TR+P VQE+V E+FGK P+KGVN
Sbjct: 301 ELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVN 360
Query: 412 PDEAVALGAAIQGGIL 427
PDE VA+GAAIQGG+L
Sbjct: 361 PDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 589 bits (1522), Expect = 0.0
Identities = 244/587 (41%), Positives = 372/587 (63%), Gaps = 20/587 (3%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPAN 115
+G+DLGTTNS VA + +V+ + +G PSVV + + G + VG A+ A +P N
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80
Query: 116 TLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMK 175
T+ KR +GR D Q + +P++ V + NG + SP ++ A +L ++
Sbjct: 81 TISSVKRFMGRSLADIQQRYPH--LPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALR 138
Query: 176 ETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGM-NN 234
+ AE LG + AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPTAAA++YG+ +
Sbjct: 139 QRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG 198
Query: 235 KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTER 294
+EG+IAV+DLGGGTFD+S+L +S GVFEV AT GD+ LGG+DFD+ L ++++ + + R
Sbjct: 199 QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGLSPR 258
Query: 295 IDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLV 354
+D +L L A AK LS E+++ A G +TR +F L+
Sbjct: 259 LDPEDQRLLLDA----ARAAKEALSDADSVEVSV----ALWQG------EITREQFNALI 304
Query: 355 NHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDE 414
L++RT C+ L+DA + +V EV++VGG TRVP V+E V E FG++P ++PD+
Sbjct: 305 APLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDK 364
Query: 415 AVALGAAIQGGILRGDV--KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFS 472
VA+GAAIQ IL G+ ++LLLDV PLSLG+ET+GG+ ++I RNTTIP ++Q F+
Sbjct: 365 VVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFT 424
Query: 473 TAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVS 532
T D QT + I V+QGERE+ AD ++L FEL GIPP G +I VTF +DA+G+++V+
Sbjct: 425 TFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVT 484
Query: 533 AKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIE 592
A +K+TG E I ++ S GL++ EI +M+K++ HA+ D + + L + + A+ + +++
Sbjct: 485 AMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQ 544
Query: 593 KSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKA 639
+L + + I+ A++ LR+ G+D D I+A + A +KA
Sbjct: 545 AALAADGDLLSAAERAAIDAAMAALREVAQGDDADAIEAAIKALDKA 591
|
Length = 616 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 571 bits (1475), Expect = 0.0
Identities = 248/588 (42%), Positives = 377/588 (64%), Gaps = 16/588 (2%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+G+DLGTTNS VA + P+V+ ++EG PSVV + + G + VG A A +P
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NT+ KRL+GR D +T + P++ V+ P + +P ++ A +L K+
Sbjct: 61 NTISSVKRLMGRSIEDIKTFSIL---PYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKL 117
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGM-N 233
K+ AE LG + AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPTAAA++YG+
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177
Query: 234 NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
EG+ AV+DLGGGTFDVS+L+++ GVFEV AT GD+ LGG+DFD+AL ++++ +
Sbjct: 178 ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ----L 233
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
I + + L ++A AK L+ E++ D G LTR +FE L
Sbjct: 234 GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKG------KLTRDEFEAL 287
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
+ L+++T + C+ L+DA ++++++ V+LVGG TR+P V+ V E+FG+ P ++PD
Sbjct: 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPD 347
Query: 414 EAVALGAAIQGGILRGDV--KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVF 471
+ VALGAAIQ +L G+ +LLLLDVTPLSLGIET+GG+ ++I RNT IP ++Q F
Sbjct: 348 QVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEF 407
Query: 472 STAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531
+T D QT + I V+QGERE+ D ++L FEL GIPP G +I VTF +DA+G++TV
Sbjct: 408 TTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467
Query: 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSI 591
SA++++TG EQ I ++ S GLS+ EIE+M+K++ HA+ D + L + + A+ + ++
Sbjct: 468 SAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEAL 527
Query: 592 EKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKA 639
+ +L + + + I+ A+ L+KA+ G+D D IKA ++A +A
Sbjct: 528 QAALAADGDLLSEDERAAIDAAMEALQKALQGDDADAIKAAIEALEEA 575
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 559 bits (1443), Expect = 0.0
Identities = 238/378 (62%), Positives = 302/378 (79%), Gaps = 7/378 (1%)
Query: 52 GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVT 111
+ +IG+DLGTTNSCVAV++ P +IEN+EG RTTPS+V+F K +LVG AKRQ
Sbjct: 1 RSTIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSF-TKTGILVGEAAKRQEAL 59
Query: 112 NPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVL 171
+P NT F TKRLIGR+F D + Q++MK+ +KIV NGDAW+ NG++YSPSQI +FVL
Sbjct: 60 HPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVL 119
Query: 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG 231
K+K+TAE+YLGK V EAVITVPAYFND+QRQATKDAG +AGL V RIINEPTAAAL+YG
Sbjct: 120 KKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYG 179
Query: 232 MNNKE--GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289
++ ++ IAV+DLGGGTFD+S+L I +GVFEVKATNGDT LGGEDFDNA++++++ EF
Sbjct: 180 IDKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKEF 239
Query: 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349
KR +IDL+++K A+QR++E+AEKAKIELSS+ ++ I LP++ G KHL IT+TR +
Sbjct: 240 KRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYL----DGPKHLRITITRRE 295
Query: 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKG 409
FE L + +RT PCK CLKDA + KD+DEV+LVGGMTR+P +Q +V EIFGK PSK
Sbjct: 296 FEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKS 355
Query: 410 VNPDEAVALGAAIQGGIL 427
VNPDEAVALGAAIQG IL
Sbjct: 356 VNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 486 bits (1253), Expect = e-168
Identities = 203/374 (54%), Positives = 261/374 (69%), Gaps = 9/374 (2%)
Query: 56 IGVDLGTTNSCVAVMEGKN-PKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
IG+DLGTTNS VA ++ P++I N EG+RTTPSVV F+ GE+LVG AKRQA+ NP
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NT+ KRLIGR+F+D Q K V AP VE G++YSP ++ A +L K+
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSA-KKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKL 119
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
KE AE+YLG+ V+EAVITVPAYFNDAQR+ATK+A IAGL+V R+INEPTAAAL+YG++
Sbjct: 120 KEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDK 179
Query: 235 ---KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291
K I VFDLGGGTFDVS++E+ GVFEV AT GD LGG+DFDNAL ++L +FK
Sbjct: 180 KDEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKE 239
Query: 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFE 351
IDL D AL+RL+E+AEKAKI LSS+ + I LP + L + LTR +FE
Sbjct: 240 KGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGL----GSGGDLEVELTREEFE 295
Query: 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVN 411
L+ L+ERT + L DA + +D+D VLLVGG +R+P V+E++ E+FGK P + ++
Sbjct: 296 ELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSID 355
Query: 412 PDEAVALGAAIQGG 425
PDEAVALGAAI
Sbjct: 356 PDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 480 bits (1237), Expect = e-166
Identities = 214/378 (56%), Positives = 272/378 (71%), Gaps = 13/378 (3%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG+DLGTT SCV V + ++I N +G R TPS VAF GE L+G AK QA +NP
Sbjct: 3 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTD-GERLIGDAAKNQATSNPE 61
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEAN----GQQYSPSQIGAFV 170
NT+F KRLIGR+F+D + QK++K++P+K+VN +G ++E + + +SP +I A V
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNK-DGKPYIEVDVKGEKKTFSPEEISAMV 120
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
LTKMKE AE+YLGK V AV+TVPAYFNDAQRQATKDAG IAGL+V RIINEPTAAA++Y
Sbjct: 121 LTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAY 180
Query: 231 GMNNKEG--LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288
G++ K G I VFDLGGGTFDVS+L I NGVFEV ATNGDT LGGEDFD ++E +
Sbjct: 181 GLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIKL 240
Query: 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRS 348
FK+ D+S+DK ALQ+LR EKAK LSS QT I I + G + + TLTR+
Sbjct: 241 FKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIE---IESLFDG-EDFSETLTRA 296
Query: 349 KFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKSPS 407
KFE L L ++T P K L+DA++ D+DE++LVGG TR+PKVQ+++ E F GK PS
Sbjct: 297 KFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPS 356
Query: 408 KGVNPDEAVALGAAIQGG 425
+G+NPDEAVA GAA+Q G
Sbjct: 357 RGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 456 bits (1174), Expect = e-156
Identities = 199/382 (52%), Positives = 258/382 (67%), Gaps = 18/382 (4%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPAN 115
IG+DLGTT SCV V + ++I N +G RTTPS VAF E L+G AK Q NP N
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTN 60
Query: 116 TLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEAN----GQQYSPSQIGAFVL 171
T+F KRLIGR+F+D Q +MK PFK+VN G + + + P +I + VL
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGG-GKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG 231
TKMKE AE+YLGK+V+ AVITVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA++YG
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 232 MNNK---EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288
++ K E + +FDLGGGTFDVS+L I +G+FEVKAT GDT LGGEDFDN L+ V E
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQT--EINLPFITADASGAKHLNITLT 346
FKR + D+S +K AL+RLR + E+AK LSS++Q EI+ F D ++T
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGID------FYTSIT 293
Query: 347 RSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKS 405
R++FE L L T P + L+DA + + +++LVGG TR+PKVQ+++ + F GK
Sbjct: 294 RARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKE 353
Query: 406 PSKGVNPDEAVALGAAIQGGIL 427
+K +NPDEAVA GAA+Q IL
Sbjct: 354 LNKSINPDEAVAYGAAVQAAIL 375
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 387 bits (996), Expect = e-130
Identities = 161/372 (43%), Positives = 223/372 (59%), Gaps = 21/372 (5%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
IG+DLGTTNS VA + K++ + G PSVV + G + VG A + A+++P
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGG-ISVGHDALKLAISDPK 60
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQY-SPSQIGAFVLTK 173
NT+ KRL+G+ D + I+ NG + Q +P ++ A +L
Sbjct: 61 NTISSVKRLMGKSIEDIKKSF----PYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKA 116
Query: 174 MKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGM- 232
+KE AE LG + AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPTAAAL+YG+
Sbjct: 117 LKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLD 176
Query: 233 NNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRT 292
KEG+ AV+DLGGGTFDVS+L++ GVFEV AT GD+ LGG+DFD L E L+ ++
Sbjct: 177 KKKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLK 236
Query: 293 ERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFET 352
I L A KAK LS + E+ T+TR +FE
Sbjct: 237 SLISDEDQAELLL----IARKAKEALSGAEEVEVRGQDFK----------CTITREEFEK 282
Query: 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNP 412
L++ L+++T CK L+DA +++KD+ V+LVGG TR+P VQE V++ FG+ P +NP
Sbjct: 283 LIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINP 342
Query: 413 DEAVALGAAIQG 424
DE VA+GAA+Q
Sbjct: 343 DEVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 366 bits (943), Expect = e-122
Identities = 166/373 (44%), Positives = 234/373 (62%), Gaps = 37/373 (9%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPAN 115
IG+DLGTTNS VAV + ++I N+ G TPSVV+ ++ GE+LVG A+ + +T+P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 116 TLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMK 175
T KR +G T K+ ++ +++ ++ + VL +K
Sbjct: 61 TAASFKRFMG-------TDKKYRL-----------------GKREFRAEELSSLVLRSLK 96
Query: 176 ETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNK 235
E AE+YLG+ V+EAVI+VPAYFND QR+ATK AG +AGL V+R+INEPTAAAL+YG+++K
Sbjct: 97 EDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK 156
Query: 236 --EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
E VFDLGGGTFDVSVLE+ +GV EV+A+ GD +LGGEDF AL E F +
Sbjct: 157 DEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAE----AFLKKH 212
Query: 294 RID-LSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFET 352
+D D L RL +AE+AK LS + E+++ + L TLTR +FE
Sbjct: 213 GLDFEKLDPSELARLLRAAERAKRALSDQEEAEMSVRI------EGEELEYTLTREEFEE 266
Query: 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNP 412
+ L+ER + P + L+DA + D+DE++LVGG TR+P V+++V+ +FG+ P +NP
Sbjct: 267 ICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNP 326
Query: 413 DEAVALGAAIQGG 425
DE VALGAAIQ G
Sbjct: 327 DEVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 358 bits (922), Expect = e-118
Identities = 155/384 (40%), Positives = 232/384 (60%), Gaps = 16/384 (4%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
V+G+D G NS VAV V+ N R TPS+V+F +K + L+G AK QA++N
Sbjct: 2 VVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEK-QRLIGEAAKNQAISNFK 60
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEAN--GQQ--YSPSQIGAFV 170
NT+ KRLIGR+F+D + QKE+K +PFK+V P+G ++ N G++ +SP Q+ A +
Sbjct: 61 NTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAML 120
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
LTK+KE AE L V++ VI+VP+YF DAQR+A DA +IAGL+ R++NE TA AL+Y
Sbjct: 121 LTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY 180
Query: 231 GM------NNKEGLIAVF-DLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283
G+ ++ F D+G + VS++ + G +V +T D LGG DFD AL E
Sbjct: 181 GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALFE 240
Query: 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNI 343
EFK +ID+ + A RL + EK K LS+ ++ +N+ + D K ++
Sbjct: 241 HFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLMED----KDVSG 296
Query: 344 TLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG 403
+ R +FE L L+ER + P + L +A +T +D+ V +VGG TR+P V+E++ ++FG
Sbjct: 297 KIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVFG 356
Query: 404 KSPSKGVNPDEAVALGAAIQGGIL 427
K S +N DEAVA G A+Q +L
Sbjct: 357 KELSTTLNADEAVARGCALQCAML 380
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-117
Identities = 200/577 (34%), Positives = 310/577 (53%), Gaps = 38/577 (6%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+G+D GTTNS +A+ + KVI++ + P+ + F +G
Sbjct: 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-FTIGN----------N 69
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
L KRL G+ + + + ++ + + + +Q +I A + +
Sbjct: 70 KGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYL 129
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN- 233
K AE L ++++AVITVPA+FNDA R A +IAG +V R+I EPTAAA +YG+N
Sbjct: 130 KNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK 189
Query: 234 NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
N++G V+DLGGGTFDVS+L I G+F+V ATNGD LGG D D + ++L ++F
Sbjct: 190 NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF---- 245
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
DL LQ A+KAK +T D NI++ + E L
Sbjct: 246 --DLPNSIDTLQL----AKKAK-------ETLTYKDSFNND-------NISINKQTLEQL 285
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
+ L+ERT + CL+ A ++D V+LVGG TR+P +++ + + F ++PD
Sbjct: 286 ILPLVERTINIAQECLEQAGN--PNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPD 343
Query: 414 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 473
+AV GAA+Q L LL+DV PLSLG+E GGI ++I RNT IP + F+T
Sbjct: 344 KAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTT 403
Query: 474 AADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSA 533
ADNQT + +LQGEREMAAD ++L FEL G+PP G + EVTF IDA+GI++VSA
Sbjct: 404 YADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSA 463
Query: 534 KDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEK 593
+K + I ++ + G+ ++EI+ M++ A +A+ D + L + A+ I++IE+
Sbjct: 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIER 523
Query: 594 SLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIK 630
++ E + I + ++++A+ DI I
Sbjct: 524 AIAELTTLLSESEISIINSLLDNIKEAVHARDIILIN 560
|
Length = 595 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 310 bits (795), Expect = 3e-99
Identities = 149/387 (38%), Positives = 227/387 (58%), Gaps = 17/387 (4%)
Query: 55 VIGVDLGTTNSCVAVME---GKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVT 111
+IG+DLGTT S V V + G+ +I + G ++ PSVVAF +LVG A QA
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGET-DIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEH 79
Query: 112 NPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEA----NGQQYSPSQIG 167
NP NT++ KR IG+ F + + E FK+ A+ + + +P +IG
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 168 AFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAA 227
+ ++ K+++ AE YLG V +AVI+VPA F++ QR AT A +AGL+V R+INEPTAAA
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 228 LSYGMNNKEGL--IAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFL 285
L+YG++ K+ + + V DLGGGT DVS+L G+F +A G+ LGG+DF+ LL++L
Sbjct: 200 LAYGLHKKQDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 286 VSEFKRT--ERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAK-HLN 342
+ + D +D +QRLR++ E AKI L+ T I+L +
Sbjct: 260 YQKIYEKYGKVPDNKED---IQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFE 316
Query: 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF 402
LTR +FETL L ++ P + L + ++ ++VDE++LVGG TR+P++++++ F
Sbjct: 317 YELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFF 376
Query: 403 GKSPSKGVNPDEAVALGAAIQGGILRG 429
GK P+ V+P+ AV G AIQ GI+ G
Sbjct: 377 GKDPNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 281 bits (721), Expect = 1e-88
Identities = 131/380 (34%), Positives = 218/380 (57%), Gaps = 17/380 (4%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPAN 115
IGV G T++C+AV + V+ N G R TP+VVAF E++VG AK+ + N AN
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDT-EVIVGLAAKQGRIRNAAN 61
Query: 116 TLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAW-VEANGQQY--SPSQIGAFVLT 172
T+ K+++GR ++D QKE KI+ + + + SP ++ +
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 173 KMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGM 232
KMKE A+S LG + VITVP YF++ Q+ A ++A AG +V RII+EP+AAAL+YG+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 233 ----NNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288
+ + V+ LGG + DV++L +++G++ V AT+ D LGGE F L ++L +E
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANE 241
Query: 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSS--TSQTEINLPFITADASGAKHLNITLT 346
FKR + D+ + A+ +L +AE AK LS+ ++ + +++
Sbjct: 242 FKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVE------SLYEGIDFQCSVS 295
Query: 347 RSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSP 406
R++FE+L + L + P + L+ AN+T D+++V+L GG +R+PK+Q+++ ++F
Sbjct: 296 RARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVE 355
Query: 407 -SKGVNPDEAVALGAAIQGG 425
++PDE +A+GAA Q G
Sbjct: 356 VLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 256 bits (654), Expect = 6e-79
Identities = 145/389 (37%), Positives = 218/389 (56%), Gaps = 24/389 (6%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
V+G D+G + +AV + + N R TPSV++F K +G AK Q +T+
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHAN 60
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEAN--GQQ--YSPSQIGAFV 170
NT+ KR GR FND QKE + + + +V NG V+ G++ +S QI A +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
LTK+KETAE+ L K V++ VI+VP++F DA+R++ DA +I GL+ R++N+ TA AL+Y
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 231 GM--------NNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282
G+ + K ++ D+G F VS + G +V T D FLGG++FD L+
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 240
Query: 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLP---FIT-ADASGA 338
E +EFK ++D AL RL + EK K +SS S T++ L F+ D SG
Sbjct: 241 EHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNS-TDLPLNIECFMNDKDVSG- 298
Query: 339 KHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIV 398
+ RS+FE L L++R + P + L+ ++ ++DV V +VGG TR+P V+E +
Sbjct: 299 -----KMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERI 353
Query: 399 TEIFGKSPSKGVNPDEAVALGAAIQGGIL 427
+ FGK S +N DEAVA G A+Q IL
Sbjct: 354 AKFFGKDVSTTLNADEAVARGCALQCAIL 382
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 2e-76
Identities = 137/392 (34%), Positives = 204/392 (52%), Gaps = 28/392 (7%)
Query: 56 IGVDLGTTNSCVAVME-GKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+G+DLG+ VA+++ G +++ N E R TPS VAF + GE L G+ A A P
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAF-KGGERLFGSDASSLAARFPQ 59
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPF--KIVNAPNGDAWVEAN-GQQYSPSQIGAFVL 171
K L+G+ +D P +V+ G + + G++YS ++ A +L
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 172 TKMKETAESYLG-KSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
K+ AE + V + VITVP YF AQRQA DA +AGL+V ++N+ TAAAL+Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 231 GM-----NNKEGLIAVFDLGGGTFDVSVLEISN----------GVFEVKATNGDTFLGGE 275
+ NNK + +D+G G+ +V+E S EV D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 276 DFDNALLEFLVSEF--KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITA 333
+FD L + L EF K ++D+ + A+ +L + A +AK LS+ S+ +++ +
Sbjct: 240 EFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYD 299
Query: 334 DASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPK 393
D +TR++FE L L ER AP K L+ A +T+KD+D V L+GG TRVPK
Sbjct: 300 D----IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPK 355
Query: 394 VQEIVTEIFGKSP-SKGVNPDEAVALGAAIQG 424
VQE ++E GK K +N DEA A+GAA
Sbjct: 356 VQEELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 236 bits (602), Expect = 3e-71
Identities = 135/386 (34%), Positives = 208/386 (53%), Gaps = 18/386 (4%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
V+G+DLG + VAV + I N R TP+ ++F K +G AK Q ++N
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRS-IGAAAKSQVISNAK 60
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEA----NGQQYSPSQIGAFV 170
NT+ G KR GR F+D Q E + + +V P G ++ + ++ Q+ A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
LTK+KETAES L K V + V++VP ++ DA+R++ DA +IAGL+ R++NE TA AL+Y
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 231 GM--------NNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282
G+ K + D+G + VSV + G +V AT DT LGG FD L+
Sbjct: 181 GIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSS-TSQTEINLPFITADASGAKHL 341
+ EF + ++D+ AL RL + EK K +S+ S +N+ D + +
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTM 300
Query: 342 NITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEI 401
N R KF + + L+ R + P ++ L+ A + +D+ V +VGG TR+P V+E +++
Sbjct: 301 N----RGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKF 356
Query: 402 FGKSPSKGVNPDEAVALGAAIQGGIL 427
FGK S +N DEAVA G A+Q IL
Sbjct: 357 FGKEVSTTLNADEAVARGCALQCAIL 382
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 8e-69
Identities = 134/386 (34%), Positives = 214/386 (55%), Gaps = 18/386 (4%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
V+G+DLG N +AV + I N R TP+ ++ + +G AK Q VTN
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRA-IGNAAKSQIVTNVR 60
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEA----NGQQYSPSQIGAFV 170
NT+ G K+L GR F+D Q E +P+++ PNG V+ + ++ Q+ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
L K+KET+E+ L K V++ VI++P++F DA+R++ A ++AGL+ R++NE TA AL+Y
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 231 G--------MNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282
G ++ K + D+G + VSV + G +V AT D +LGG +FD AL+
Sbjct: 181 GIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSS-TSQTEINLPFITADASGAKHL 341
++ EFK +I++ ++ AL RL + EK K +S+ S +N+ D + +
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKM 300
Query: 342 NITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEI 401
N R++FE L L+ R + P K ++ AN+ +D+ + +VGG TR+P V+E +T
Sbjct: 301 N----RAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSF 356
Query: 402 FGKSPSKGVNPDEAVALGAAIQGGIL 427
F K S +N DEAVA G A+Q IL
Sbjct: 357 FLKDISTTLNADEAVARGCALQCAIL 382
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 5e-66
Identities = 125/380 (32%), Positives = 198/380 (52%), Gaps = 17/380 (4%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPAN 115
G+DLG NS +AV + ++ N R+TPSVV F K L G K + +N N
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKN 59
Query: 116 TLFGTKRLIGRRFNDAQTQKEMKMVPFKIV--NAPNGDAWVEANGQQ--YSPSQIGAFVL 171
T+ KR+IG ++ ++E K K+V + A V G++ +S +Q+ A +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG 231
K+K+T + ++++ I VP ++ + QR DA RIAGL+ RI+N+ TAA +SYG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 232 M--------NNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283
+ K ++A D+G ++ S++ G +V T D GG DFD A+ E
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNI 343
EFK +ID+ ++ A R+ +AEK K LS+ + N PF ++
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT----NAPFSVESVMNDVDVSS 295
Query: 344 TLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG 403
L+R + E LV L+ER P L A ++ ++VD V ++GG TR+P +++ ++E FG
Sbjct: 296 QLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFG 355
Query: 404 KSPSKGVNPDEAVALGAAIQ 423
K S +N DEA+A GAA
Sbjct: 356 KPLSTTLNQDEAIAKGAAFI 375
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 6e-63
Identities = 120/392 (30%), Positives = 191/392 (48%), Gaps = 30/392 (7%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
VIG++ G T S +A + VI N +G R PS ++++ + E G AK Q + N
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQEYH-GNQAKAQLIRNAK 60
Query: 115 NTLFGTKRLIGRRFND---AQTQKEMKMVPFKIVNAPNGDAWVEANGQQ--YSPSQIGAF 169
NT+ + L+G+ F++ + + I E ++ + ++
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 170 VLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALS 229
L ++KE AE +LGK V+ AV++VP +F+D Q +A A AGL V ++I EP AA L+
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 230 YGMNNKEGLIA------VFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283
Y A V D GG DVSV+ + G++ + AT D LGG+ D+AL++
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVK 240
Query: 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELS-STSQTEINLPFITADASGAKHLN 342
EF + + D + AL +LR +E K LS STS T + S A+ ++
Sbjct: 241 HFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSAT-------CSVESLAEGID 293
Query: 343 IT--LTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTE 400
+ R +FE L + + + A + + A + D+DEVLLVGG PK+ ++
Sbjct: 294 FHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSY 353
Query: 401 IFGK--------SPSKGVNPDEAVALGAAIQG 424
+F + + SK ++P E VA G AIQ
Sbjct: 354 LFPETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-36
Identities = 106/440 (24%), Positives = 161/440 (36%), Gaps = 101/440 (22%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQ-----KGELLVGTPAKRQAV 110
+G+D GT+NS VAV P+++ G+ T PS + F + E+L G A +
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 111 TNPANTLF--GTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGA 168
P K +G G++ + + A
Sbjct: 61 EGPGEGRLMRSLKSFLGSSLFRETR----------------------IFGRRLTFEDLVA 98
Query: 169 FVLTKMKETAESYLGKSVSEAVITVPAYFNDAQ----RQATKD---AGRIAGLDVQRIIN 221
L ++K+ AE+ LG + VI P +F QA A R AG
Sbjct: 99 RFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQY 158
Query: 222 EPTAAALSYGMN-NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTF------LGG 274
EP AAAL Y +E L+ V D+GGGT D S++ + D +GG
Sbjct: 159 EPIAAALDYEQRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGVRIGG 218
Query: 275 EDFDNAL-------------------------------------LEFLVSEFKRTERIDL 297
DFD L + FL + E +L
Sbjct: 219 TDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELREL 278
Query: 298 SQD-----KLA-LQRLRE---------SAEKAKIELSSTSQTEINLPFITADASGAKHLN 342
++D L L + E + E AKI LSS +T I+L F+ L
Sbjct: 279 ARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------EVGLE 332
Query: 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF 402
+TR++FE + +ER +A L A ++ +D V L GG + VP V++ F
Sbjct: 333 APVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARF 392
Query: 403 GKSPSKGVNPDEAVALGAAI 422
+ + +VA G A+
Sbjct: 393 PAARIVEGDAFGSVASGLAL 412
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 2e-22
Identities = 91/429 (21%), Positives = 154/429 (35%), Gaps = 86/429 (20%)
Query: 55 VIGVDLGTTNSCVAVM----EGKNPKVIENSEGTRT-----TPSVVAFNQKGELLVGTPA 105
V+G+D GTT S VA + +VI G P+ + ++ +G+L+
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLV----- 56
Query: 106 KRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVE-----ANGQQ 160
+G + +A+ + + FK++ P+
Sbjct: 57 -----------AWGYEAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLKPLPPG 105
Query: 161 YSPSQIGAFVLTKMKETAESYLGKSVSEA---------VITVPAYFNDAQRQATKDAGRI 211
+ + A L + E A L K+ V+TVPA ++DA +QA ++A
Sbjct: 106 KTAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIK 165
Query: 212 AGLDVQR-------IINEPTAAAL--------SYGMNNKEGLIAVFDLGGGTFDVSVLEI 256
AGL R I+ EP AAAL S + +G + V D GGGT D++V E+
Sbjct: 166 AGLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFL-VCDAGGGTVDLTVYEV 224
Query: 257 SNG-VFEVK-------ATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLR 308
++ +K G TF+ + E L+ E +L AL +
Sbjct: 225 TSVEPLRLKELAAGSGGLCGSTFV------DRAFEELLKERLGELFYELPSKSPALWLIL 278
Query: 309 ESAEK-AKIELSSTSQTE------INLPFITADASGAKHLNITLTRSKFETLVNHLIERT 361
+ K T G ++ + ++ ++L + +IE
Sbjct: 279 MRFFETIKRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEI 338
Query: 362 KAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK------SPSKGVNPDEA 415
+ L+ A V + LVGG P ++ + E F P +P A
Sbjct: 339 IDLIEEQLEQAEKG-DKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRP---PDPQLA 394
Query: 416 VALGAAIQG 424
V GA + G
Sbjct: 395 VVRGAVLFG 403
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|177741 PLN00130, PLN00130, succinate dehydrogenase (SDH3); Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (184), Expect = 2e-15
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWASA----NWASLARPFSARPAGNDVI 56
MA + RS+RRRDV SA LS KSL GN +PSW S+ N+AS +R F ++P ND++
Sbjct: 1 MAATALFRSIRRRDVVSAPLSVYKSLAGNAQPSWGSSYIGQNYASFSRAFGSKPVVNDIL 60
Query: 57 GVDLGTTNS 65
G LGT N+
Sbjct: 61 GTGLGTNNA 69
|
Length = 213 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 77/321 (23%), Positives = 126/321 (39%), Gaps = 90/321 (28%)
Query: 163 PSQIGAF--VLTKM----KETAESYLGKSVSEAVITVPAYFN-----DAQRQA----TKD 207
P Q+ F ++ M K+ AE+ L ++++AVI P F +A RQA +
Sbjct: 120 PQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERA 179
Query: 208 AGRIAGL-DVQRIINEPTAAALSYGMN-NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKA 265
A R AG DV EP AA L + +E + V D+GGGT D S+L + + +A
Sbjct: 180 AKR-AGFKDV-EFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPS-WRGRA 236
Query: 266 TNGDTFL-------GGEDFD------------------------------NA-------- 280
+ L GG D D NA
Sbjct: 237 DRSASLLGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPA 296
Query: 281 -----------LLEFLVSEFKRTERID----LSQDKLALQRLRESAEKAKIELSSTSQTE 325
LL L+ + + E++ + + +L+ + +R SAE+AKI LS ++T
Sbjct: 297 QSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVR-SAEEAKIALSDQAETR 355
Query: 326 INLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLV 385
+L FI+ L +++ E ++ + R + L A + DV + L
Sbjct: 356 ASLDFISDG------LATEISQQGLEEAISQPLARILELVQLALDQAQVK-PDV--IYLT 406
Query: 386 GGMTRVPKVQEIVTEIFGKSP 406
GG R P ++ + + P
Sbjct: 407 GGSARSPLIRAALAQQLPGIP 427
|
Length = 450 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 56/266 (21%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPAN 115
IG+DLGT N+ V V +G+ + E PSVVA AV + A
Sbjct: 5 IGIDLGTANTLVYV-KGRGIVLNE--------PSVVAIRTD---RDAKTKSILAVGHEA- 51
Query: 116 TLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMK 175
K ++G+ + + MK + D V +Y K
Sbjct: 52 -----KEMLGKTPGNIVAIRPMK-------DGVIADFEVTEKMIKY---------FIKQV 90
Query: 176 ETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNK 235
+ +S+ + VI VP+ +R+A K++ AG +I EP AAA+ G+ +
Sbjct: 91 HSRKSFFKPRI---VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE 147
Query: 236 EGLIA-VFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTER 294
E + V D+GGGT +V+V+ + G+ ++ +GG++FD A++ ++ +RT
Sbjct: 148 EPTGSMVVDIGGGTTEVAVISL-GGIVVSRSIR----VGGDEFDEAIINYI----RRTYN 198
Query: 295 IDLSQDKLALQRLRESAEKAKIELSS 320
+ + + ++AE+ KIE+ S
Sbjct: 199 LLIGE---------QTAERIKIEIGS 215
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-07
Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 72/282 (25%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GELL-VGTPAKRQAVTNP 113
IG+DLGT N+ V V +GK V+ +E PSVVA + K G++L VG A
Sbjct: 1 IGIDLGTANTLVYV-KGKG-IVL--NE-----PSVVAIDTKTGKILAVGEEA-------- 43
Query: 114 ANTLFGTKRLIGRRFNDAQTQKEMKMV-PFKIVNAPNGDAWVEANGQQYSPSQ--IGAFV 170
K ++GR T ++++ P K +G V A+ + ++ + F
Sbjct: 44 -------KEMLGR------TPGNIEVIRPLK-----DG---VIAD---FEATEAMLRYF- 78
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
+ K+K VI VP+ + +R+A DA AG +I EP AAA+
Sbjct: 79 IKKVK----GRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGA 134
Query: 231 GMN-NKEGLIAVFDLGGGTFDVSVLEIS-NGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288
G++ + V D+GGGT +++V IS G+ K+ +GG+DFD A++ ++
Sbjct: 135 GLDIFEPKGNMVVDIGGGTTEIAV--ISLGGIVVSKSIR----VGGDDFDEAIIRYV--- 185
Query: 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPF 330
+ K L +AE+ KIE+ S +
Sbjct: 186 ----------RRKYNLLIGERTAEEIKIEIGSAYPLDEEETM 217
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 170 VLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALS 229
++ ++K+T E LG ++ A +P + + + AG++V +++EPTAAA
Sbjct: 45 IVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAV 104
Query: 230 YGMNNKEGLIAVFDLGGGTFDVSVLE 255
+ N AV D+GGGT +S+L+
Sbjct: 105 LQIKNG----AVVDVGGGTTGISILK 126
|
Length = 239 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 170 VLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALS 229
++ ++K+T E LG + A +P + + + AGL+V +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 230 YGMNNKEGLIAVFDLGGGTFDVSVLE 255
+++ V D+GGGT +S+++
Sbjct: 137 LQLDDG----GVVDIGGGTTGISIVK 158
|
Length = 277 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 80/293 (27%), Positives = 122/293 (41%), Gaps = 98/293 (33%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GELLVGTPAKRQAVTNPA 114
IG+DLGT N+ V V +GK + E PSVVA N K ++L AV N A
Sbjct: 4 IGIDLGTANTLVYV-KGKGIVLNE--------PSVVAINTKTKKVL--------AVGNEA 46
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMV-PFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTK 173
K+++GR T + V P K +G V+
Sbjct: 47 ------KKMLGR------TPGNIVAVRPLK-------------DG-----------VIAD 70
Query: 174 MKETAES---YLGKSVSEA--------VITVPAYFNDAQRQATKDAGRIAGLDVQRIINE 222
E E+ Y K V VI VP+ + +R+A K+A + AG +I E
Sbjct: 71 F-EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEE 129
Query: 223 PTAAALSYGMNNKE--GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNA 280
P AAA+ G+ +E G + V D+GGGT +V+V+ G+ K+ + G++ D A
Sbjct: 130 PMAAAIGAGLPVEEPTGNM-VVDIGGGTTEVAVIS-LGGIVTSKSVR----VAGDEMDEA 183
Query: 281 LLEFLVSEFK-----RTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINL 328
+++++ ++ RT AE+ KIE+ S TE
Sbjct: 184 IIKYIRKKYNLLIGERT------------------AERIKIEIGSAYPTEEEE 218
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 166 IGAF-VLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPT 224
IGA ++ ++K T E LG+ ++ A +P ++ +A + AGL+V +++EPT
Sbjct: 67 IGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPT 126
Query: 225 AAALSYGMNNKEGLIAVFDLGGGTFDVSVLE 255
AAA G++N AV D+GGGT +S+L+
Sbjct: 127 AAAAVLGIDNG----AVVDIGGGTTGISILK 153
|
Length = 267 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 87/376 (23%), Positives = 150/376 (39%), Gaps = 75/376 (19%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQ--KGELLVGTPAKRQAVTNP 113
IG+DLGT N V KN +I N PSVVA + K L +GT AK
Sbjct: 7 IGIDLGTANILVY---SKNKGIILNE------PSVVAVDTETKAVLAIGTEAKN------ 51
Query: 114 ANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNA-PNGDAWVEANGQQYSPSQIGAFVLT 172
+IG+ P KIV P D + + + +L
Sbjct: 52 ---------MIGK-------------TPGKIVAVRPMKDGVI-------ADYDMTTDLLK 82
Query: 173 KMKETAESYLGKSVSE--AVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
++ + A +G + + V+ P+ +R+A DA + G +I EP AAA+
Sbjct: 83 QIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGA 142
Query: 231 GMNNKEGLI-AVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289
+ E + V D+GGGT +V+++ GV + +GG+ D ++ F+ ++
Sbjct: 143 DLPVDEPVANVVVDIGGGTTEVAIISFG-GVVSCHSIR----IGGDQLDEDIVSFVRKKY 197
Query: 290 KRTERIDLSQDKLALQRLRESAEKAKIELS------STSQTEINLPFITADASGAKHLNI 343
+ L +R +AE+ K+E+ E+ + L
Sbjct: 198 ----------NLLIGER---TAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES 244
Query: 344 TLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG 403
+ + H++E +A ++C + + I D V+L GG + ++E ++E
Sbjct: 245 KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVD-RGVILTGGGALLNGIKEWLSEEIV 303
Query: 404 KSPSKGVNPDEAVALG 419
NP E+VA+G
Sbjct: 304 VPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 69/282 (24%)
Query: 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGE----LLVGTPAKRQ 108
++ IG+DLGT N+ V V K ++ N PSVVA +G+ L VG AK+
Sbjct: 6 SNDIGIDLGTANTLVYV---KGKGIVLNE------PSVVAIESEGKTKVVLAVGEEAKQ- 55
Query: 109 AVTNPANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGA 168
++GR + + MK +G V A+ + + +
Sbjct: 56 --------------MLGRTPGNIVAIRPMK----------DG---VIAD-FEVTELMLKY 87
Query: 169 FVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAAL 228
F +K+ ++ VI VP+ D +R+A K+A AG +I EP AAA+
Sbjct: 88 F----IKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAI 143
Query: 229 SYGMNNKEGLIA-VFDLGGGTFDVSVLEIS-NGVFEVKATNGDTF-LGGEDFDNALLEFL 285
G+ E + V D+GGGT +V+V IS G+ + + +GG+ D A +
Sbjct: 144 GAGLPIMEPTGSMVVDIGGGTTEVAV--ISLGGI-----VSSSSVRVGGDKMDEA----I 192
Query: 286 VSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEIN 327
+ ++ + + + +AEK KIE+ S E +
Sbjct: 193 IVYVRKKYNLLIGE---------RTAEKIKIEIGSAYPEEED 225
|
Length = 342 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 190 VITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIA------VFD 243
+I +P +++A ++A AG +I EP AAA+ G++ I+ V D
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD-----ISQPSGNMVVD 153
Query: 244 LGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290
+GGGT D++VL + V T+ + G+ FD A++ ++ ++K
Sbjct: 154 IGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYK 195
|
Length = 336 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 68/279 (24%), Positives = 117/279 (41%), Gaps = 76/279 (27%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GELL-VGTPAKRQAVTNP 113
IG+DLGT N+ V V K ++ N PSVVA + K G++L VG A
Sbjct: 11 IGIDLGTANTLVYV---KGKGIVLNE------PSVVAIDTKTGKVLAVGEEA-------- 53
Query: 114 ANTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTK 173
K ++GR + + + +K +G V A+ + +L
Sbjct: 54 -------KEMLGRTPGNIEAIRPLK----------DG---VIAD------FEATEAMLRY 87
Query: 174 MKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN 233
+ A VI VP+ + +R+A ++A AG +I EP AAA+ G+
Sbjct: 88 FIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP 147
Query: 234 NKEGLIA------VFDLGGGTFDVSVLEIS-NGVFEVKATNGDTFLGGEDFDNALLEFLV 286
+ V D+GGGT +V+V IS G+ + + G++ D A+++++
Sbjct: 148 -----VTEPVGNMVVDIGGGTTEVAV--ISLGGI----VYSESIRVAGDEMDEAIVQYV- 195
Query: 287 SEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTE 325
+R + + + +AE+ KIE+ S +
Sbjct: 196 ---RRKYNLLIGER---------TAEEIKIEIGSAYPLD 222
|
Length = 335 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 168 AFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQAT----------KDAGRIAGLDVQ 217
L ++ + A L + IT P R+ A G
Sbjct: 44 EEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPV 103
Query: 218 RIINEPTAAALSYGMNNKEGL-IAVFDLGGGTFDVSVLEISNGVFEVKATN 267
++N+ AAAL+ G+ KE + V DLG GT +++ + +G V A
Sbjct: 104 AVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAI--VEDGKGGVGAAG 152
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 369 LKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILR 428
L++A + + L+GG + P ++++ +IFG +P +E ALGAAI
Sbjct: 383 LREAGGI--PIQSIRLIGGGAKSPAWRQMLADIFG-TPVDVPEGEEGPALGAAILAAWAL 439
Query: 429 G 429
G
Sbjct: 440 G 440
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 676 | |||
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 100.0 | |
| KOG0102 | 640 | consensus Molecular chaperones mortalin/PBP74/GRP7 | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| KOG0101 | 620 | consensus Molecular chaperones HSP70/HSC70, HSP70 | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103 | 727 | consensus Molecular chaperones HSP105/HSP110/SSE1, | 100.0 | |
| KOG0104 | 902 | consensus Molecular chaperones GRP170/SIL1, HSP70 | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 100.0 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.97 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.97 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.96 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.9 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.9 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.81 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.73 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.68 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.67 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.53 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.53 | |
| PTZ00452 | 375 | actin; Provisional | 99.47 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.44 | |
| PTZ00004 | 378 | actin-2; Provisional | 99.39 | |
| PTZ00281 | 376 | actin; Provisional | 99.37 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.34 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 99.33 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.27 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 99.25 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 99.12 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 99.04 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 99.0 | |
| KOG0679 | 426 | consensus Actin-related protein - Arp4p/Act3p [Cyt | 98.97 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 98.77 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 98.76 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 98.76 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.7 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.67 | |
| PRK15027 | 484 | xylulokinase; Provisional | 98.67 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 98.64 | |
| PLN00130 | 213 | succinate dehydrogenase (SDH3); Provisional | 98.62 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.61 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 98.58 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 98.56 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 98.55 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 98.54 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 98.45 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 98.4 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 98.4 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 98.35 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 98.35 | |
| PLN02295 | 512 | glycerol kinase | 98.3 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 98.25 | |
| PRK04123 | 548 | ribulokinase; Provisional | 98.25 | |
| KOG0676 | 372 | consensus Actin and related proteins [Cytoskeleton | 98.09 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 98.01 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 97.83 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 97.73 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 97.61 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.51 | |
| KOG0677 | 389 | consensus Actin-related protein Arp2/3 complex, su | 97.26 | |
| KOG0797 | 618 | consensus Actin-related protein [Cytoskeleton] | 97.08 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 97.06 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 97.05 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 97.03 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 96.57 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 96.56 | |
| PLN02669 | 556 | xylulokinase | 96.52 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 96.11 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 95.93 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 95.73 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 95.68 | |
| KOG0680 | 400 | consensus Actin-related protein - Arp6p [Cytoskele | 95.52 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 95.38 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 95.34 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 95.2 | |
| KOG0681 | 645 | consensus Actin-related protein - Arp5p [Cytoskele | 94.43 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 94.35 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 94.33 | |
| KOG2531 | 545 | consensus Sugar (pentulose and hexulose) kinases [ | 94.33 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 94.08 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 93.69 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 93.45 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 91.78 | |
| PRK09604 | 332 | UGMP family protein; Validated | 91.53 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 91.48 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 90.65 | |
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 90.58 | |
| PRK14101 | 638 | bifunctional glucokinase/RpiR family transcription | 90.05 | |
| KOG0681 | 645 | consensus Actin-related protein - Arp5p [Cytoskele | 89.52 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 89.39 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 88.85 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 88.22 | |
| COG5026 | 466 | Hexokinase [Carbohydrate transport and metabolism] | 86.29 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 85.94 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 85.81 | |
| PLN02666 | 1275 | 5-oxoprolinase | 85.68 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 84.23 | |
| KOG1385 | 453 | consensus Nucleoside phosphatase [Nucleotide trans | 83.58 | |
| PLN02920 | 398 | pantothenate kinase 1 | 82.5 | |
| TIGR00329 | 305 | gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami | 81.35 | |
| PRK09585 | 365 | anmK anhydro-N-acetylmuramic acid kinase; Reviewed | 81.22 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 80.97 | |
| COG1382 | 119 | GimC Prefoldin, chaperonin cofactor [Posttranslati | 80.72 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 80.5 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 80.34 |
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-136 Score=1010.87 Aligned_cols=594 Identities=53% Similarity=0.852 Sum_probs=572.8
Q ss_pred CCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 51 AGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 51 ~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
....|||||||||||||+++++|.+++|.|.+|+|.+||+|+|+++ ++++|++|+++...||++++++.|||+|+.++|
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d 112 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFND 112 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCC
Confidence 3467999999999999999999999999999999999999999766 999999999999999999999999999999999
Q ss_pred HHHHHHhccCCeEEEeCCCCCeEE--EeC---CeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHH
Q 005807 131 AQTQKEMKMVPFKIVNAPNGDAWV--EAN---GQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQAT 205 (676)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~v--~~~---~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l 205 (676)
+.+|+++++|||++++ .++.+.+ ..+ .+.|+|+++++|+|.++++.|+.|||..++++|+||||||++.||+++
T Consensus 113 ~~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQAT 191 (663)
T KOG0100|consen 113 KSVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQAT 191 (663)
T ss_pred hhhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhh
Confidence 9999999999999997 4455554 333 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEeeChhHHHHHhccccCCCC--eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHH
Q 005807 206 KDAGRIAGLDVQRIINEPTAAALSYGMNNKEG--LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283 (676)
Q Consensus 206 ~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~--~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~ 283 (676)
++|..+|||+++++|+||+|||++||++++++ ++||||+||||||+|++.+++|+|+|+++.||.+|||+|||.++++
T Consensus 192 KDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 192 KDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred cccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 99999999999999999999999999998764 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
|+..-|+++++.|++++.+++.+|+.+||++|+.||+..++.+.++.++++ .+++-++||+.||++..+++..+..
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG----~DfSEtLtRAkFEElNmDLFr~Tlk 347 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG----VDFSETLTRAKFEELNMDLFRKTLK 347 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc----ccccchhhhhHHHHhhhHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999887 8999999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHh-CCCCCCCCCcchhHhhHHHHHhhhccCC--CceeEEEeec
Q 005807 364 PCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVT 440 (676)
Q Consensus 364 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f-g~~~~~~~~p~~aVa~GAal~a~~l~~~--~~~~~~~d~~ 440 (676)
+++++|+++++.+.+|+.|+||||++|||.+|++|+++| |+++...+||++|||+|||.+|+.|+|. ..++++.|++
T Consensus 348 Pv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~ 427 (663)
T KOG0100|consen 348 PVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVN 427 (663)
T ss_pred HHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeec
Confidence 999999999999999999999999999999999999999 7999999999999999999999999994 5789999999
Q ss_pred ccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEE
Q 005807 441 PLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVT 520 (676)
Q Consensus 441 ~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~ 520 (676)
|+++||++.+|.|.++|||||.||+++++.|+|+.|||..+.|.+|+||+++..+|+.||.|.|.||||+|+|.|+|+||
T Consensus 428 pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVt 507 (663)
T KOG0100|consen 428 PLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVT 507 (663)
T ss_pred cccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 005807 521 FDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG--- 596 (676)
Q Consensus 521 f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~--- 596 (676)
|++|.||||+|+|.|+.||++.+++|+++ +.||+|+|++|++++++|+++|+..+++.+++|+||+|.|++++.+.
T Consensus 508 FevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dke 587 (663)
T KOG0100|consen 508 FEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKE 587 (663)
T ss_pred EEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchh
Confidence 99999999999999999999999999986 77999999999999999999999999999999999999999999994
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHhcC
Q 005807 597 EYREKIPGEVAKEIEDAVSDLRKAMAGED---IDGIKAKLDAANKAVSKIGQHMAGG 650 (676)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~L~~~~~~i~~~~~~~ 650 (676)
.+..++++++++.+..++++..+||+.+. .++++++.++|+.+|.||..++|+.
T Consensus 588 kLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 588 KLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46689999999999999999999999874 9999999999999999999999985
|
|
| >KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-112 Score=873.57 Aligned_cols=607 Identities=70% Similarity=1.045 Sum_probs=590.7
Q ss_pred CCCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCC
Q 005807 50 PAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFN 129 (676)
Q Consensus 50 ~~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 129 (676)
.....++|||+||||||++++.+++|.++.|.+|.|.+||+|+|+.++++++|..|+++...||.|+++.-||+|||++.
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 005807 130 DAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG 209 (676)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa 209 (676)
|++++++++..||+++...+|++|++..|+.++|.++.+++|.+++++|+.|++..+..+|+||||||++.||+++++|.
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 210 RIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
++||++++++++||+|||++|+++++.+ .++|||+||||||++++.+.++.|++.++.||.++||++||..+++|+...
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 9999999999999999999999997765 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHH
Q 005807 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNC 368 (676)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~ 368 (676)
|++..++++.++..++++|++++|++|+.||.....++++|++..+..|+.++++++||.+||+++.+++++.++++.++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceee
Q 005807 369 LKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIET 448 (676)
Q Consensus 369 l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~ 448 (676)
|+++++...+|+.|+||||++|+|.+++.+++.||..+...+||+++||.|||++++.+++.+++++++||+|+++||++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCcc
Q 005807 449 LGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGI 528 (676)
Q Consensus 449 ~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~ 528 (676)
.+|.|..+||||+.||+++++.|+++.|+|+.+.|.++|||++++.+|+.+|+|.+.|+||.|+|.|+|+|+|++|+|||
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHH
Q 005807 529 VTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAK 608 (676)
Q Consensus 529 l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~ 608 (676)
++|+|.|+.|||.++++|...++||+.||+.|+++++.+...|+.++++.+.+|..++++++.+..+.++.+.++.+..+
T Consensus 504 ~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~ 583 (640)
T KOG0102|consen 504 GTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECE 583 (640)
T ss_pred eeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc---cCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 005807 609 EIEDAVSDLRKAMA---GEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSA 656 (676)
Q Consensus 609 ~~~~~~~~~~~wl~---~~~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~ 656 (676)
+|...+.++.+.+. ..+.++++.+...|++...++++.+|+.++..+.
T Consensus 584 ~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~~~~ 634 (640)
T KOG0102|consen 584 KLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGAGGE 634 (640)
T ss_pred HHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcccCC
Confidence 99999999988765 3568999999999999999999999986554333
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-109 Score=941.92 Aligned_cols=619 Identities=56% Similarity=0.903 Sum_probs=579.7
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.+|.+.++.|..|++.+||+|+|..++++++|..|+.+...+|.++++.+|||||+++.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 469999999999999999999999999999999999999997777899999999999999999999999999999875
Q ss_pred HHHHhccCCeEEEeCCCCCeEEE--eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
++...+.+||.++.++++.+.+. ..++.++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 196 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGR 196 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45677889999998888887765 4578999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
+|||+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.++++++.|+.++||++||..|++|+.++|
T Consensus 197 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f 276 (673)
T PLN03184 197 IAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 276 (673)
T ss_pred HCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876544 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
+.+++.++..+++++.+|+.+||++|+.||....+.+.++.+....++..++.+.|||++|++++.++++++..+|+++|
T Consensus 277 ~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L 356 (673)
T PLN03184 277 KKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENAL 356 (673)
T ss_pred HhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888889999999999999999999999999999887765544557889999999999999999999999999999
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
+++++.+.+|+.|+||||+||+|.|+++|+++||..+...+||++|||.|||++|+.+++.++++.+.|++|++||+++.
T Consensus 357 ~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~slgi~~~ 436 (673)
T PLN03184 357 RDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETL 436 (673)
T ss_pred HHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccccceEEec
Confidence 99999999999999999999999999999999998888899999999999999999999988899999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
++.+.+|||||++||++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 437 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL 516 (673)
T PLN03184 437 GGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 516 (673)
T ss_pred CCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.+..|+++..++|....+||++++++++++++++.++|+.++++.+++|++|+|||.+++.|+++.++++++++++
T Consensus 517 ~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~ 596 (673)
T PLN03184 517 SVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEK 596 (673)
T ss_pred EEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999987888999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCCCCC----------CCCCCccccee
Q 005807 610 IEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNS---ASGGSQG----------GDQAPEAEYEE 673 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~---~~g~~~~----------~~~~~~~~~~~ 673 (676)
+.+.++++++||++++.+++++++++|.+.+.++..++|+++|+++ ++|+.+| +|++.||||||
T Consensus 597 l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (673)
T PLN03184 597 VEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDADFTD 673 (673)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCCCCCCCCCCCceeccccCC
Confidence 9999999999999999999999999999999999999996543222 2333332 45557999986
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-109 Score=939.71 Aligned_cols=620 Identities=66% Similarity=1.034 Sum_probs=584.1
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.+|.++++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++.+|||||+. ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 369999999999999999999999999999999999999997678899999999999999999999999999999 677
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.++..++|...+..+++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 159 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIA 159 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 88889999999999888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
||+++++++||+|||++|+..... .++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++|+.
T Consensus 160 Gl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 239 (627)
T PRK00290 160 GLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239 (627)
T ss_pred CCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987643 3999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|..++.+.|||++|+++|+|+++++...|+++|++
T Consensus 240 ~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~ 319 (627)
T PRK00290 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKD 319 (627)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888999999999999999999999999999998876654455788999999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeCC
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~~ 451 (676)
+++++.+|+.|+||||+||+|+|++.|++.||.++...+||++|||+|||++|+.+++.++++.+.|++|++||+++.++
T Consensus 320 a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~~ 399 (627)
T PRK00290 320 AGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGG 399 (627)
T ss_pred cCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecCC
Confidence 99999999999999999999999999999999888899999999999999999999998899999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.|.+|||+|+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 400 ~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v 479 (627)
T PRK00290 400 VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHV 479 (627)
T ss_pred eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 611 (676)
++.+..+++...++|....+||+++++++++++.++.++|++.+++.+++|++|+|+|.+++.|+++.+.+++++|+++.
T Consensus 480 ~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~ 559 (627)
T PRK00290 480 SAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIE 559 (627)
T ss_pred EEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 99999999999999988778999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CC-CCCCCCCCCCCcccceecCC
Q 005807 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDN--SA-SGGSQGGDQAPEAEYEEVKK 676 (676)
Q Consensus 612 ~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~--~~-~g~~~~~~~~~~~~~~~~~~ 676 (676)
+.|+++++||+.++.+++++++++|++.+.++..++|+++++. ++ +|++ .+.+.+|||||||+
T Consensus 560 ~~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 625 (627)
T PRK00290 560 AAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAK--DDDVVDAEFEEVKD 625 (627)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCC--CCccccCceeecCC
Confidence 9999999999998999999999999999999999998643321 11 2222 25668999999985
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-109 Score=929.88 Aligned_cols=597 Identities=64% Similarity=1.014 Sum_probs=568.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.++.+++++|..|.+.+||+|+|. ++.+++|..|+.+...+|.++++.+||+||+.++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~-~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFK-GSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEEC-CCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 469999999999999999999999999999999999999996 5578999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCCCCCeEEE-eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRI 211 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~ 211 (676)
+++..+.+||.++.+.++..++. .+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 99999999999998888887766 45789999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q 005807 212 AGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 290 (676)
|||+++++++||+|||++|+.....+ +++|||+||||||+||+++.++.++++++.|+.++||++||..|++|+.++|+
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~ 265 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFR 265 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999876544 99999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHH
Q 005807 291 RTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLK 370 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~ 370 (676)
++++.++..+++++.+|+.+||++|+.||....+.+.++.+..+.+|..++.+.|||++|+++++|+++++..+++++|+
T Consensus 266 ~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~ 345 (657)
T PTZ00186 266 KTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMK 345 (657)
T ss_pred hhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998988899999999999999999999999999999887665555567899999999999999999999999999999
Q ss_pred HcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeC
Q 005807 371 DANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 450 (676)
Q Consensus 371 ~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~ 450 (676)
++++++.+|+.|+||||+||||.|+++|+++||.++...+||++|||+|||++|+.+++.++++.+.|++|++|||++.+
T Consensus 346 ~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~~~ 425 (657)
T PTZ00186 346 DAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLG 425 (657)
T ss_pred HcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccccceecC
Confidence 99999999999999999999999999999999988889999999999999999999999888999999999999999999
Q ss_pred CeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEE
Q 005807 451 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVT 530 (676)
Q Consensus 451 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~ 530 (676)
|.|.+|||||++||++++++|++..|||+.+.|+|||||+..+.+|..||+|+|.++||.|+|.++|+|+|++|.||+|+
T Consensus 426 g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~ 505 (657)
T PTZ00186 426 GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICH 505 (657)
T ss_pred CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHH
Q 005807 531 VSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEI 610 (676)
Q Consensus 531 v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 610 (676)
|++.|+.||++..++|....+||+++|++|++++++++++|+.++++.+++|+++.+++.+++.+++. ..+++++++.+
T Consensus 506 V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 584 (657)
T PTZ00186 506 VTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENV 584 (657)
T ss_pred EEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999754 46899999999
Q ss_pred HHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005807 611 EDAVSDLRKAMAGED--IDGIKAKLDAANKAVSKIGQHMAGGS 651 (676)
Q Consensus 611 ~~~~~~~~~wl~~~~--~~~~~~~~~~L~~~~~~i~~~~~~~~ 651 (676)
.+.+..+++||+.++ .+.+++++++|++.+.++..++|+.+
T Consensus 585 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 627 (657)
T PTZ00186 585 KTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQA 627 (657)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999754 59999999999999999999998643
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-108 Score=932.48 Aligned_cols=598 Identities=68% Similarity=1.063 Sum_probs=574.7
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.++.++++.|..|++.+||+|+|+.++++++|..|+.+...+|.++++.+||+||+.++|+.
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 46999999999999999999999999999999999999999777789999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.++.++++...+..+++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||++|++||++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 200 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIA 200 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999999888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
||+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++|++
T Consensus 201 Gl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 201 GLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred CCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999876544 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|..++.+.|||++|+++++|+++++.++|.++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999988877665555788999999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeCC
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~~ 451 (676)
+++.+.+|+.|+||||+||+|+|+++|++.||.++...+||+++||+|||++|+++++..+++.+.|++|++||+++.+|
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~~g 440 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGG 440 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEecCC
Confidence 99999999999999999999999999999999888899999999999999999999998899999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.|.+|||+|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 441 ~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v 520 (663)
T PTZ00400 441 VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNI 520 (663)
T ss_pred eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 611 (676)
++.+..++++..+.|....+||++++++++++++++.++|++++++.+++|++|+|||.+++.|+++.+.+++++++++.
T Consensus 521 ~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~ 600 (663)
T PTZ00400 521 SAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELK 600 (663)
T ss_pred EEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Confidence 99999999999999988778999999999999999999999999999999999999999999997788899999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005807 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGG 650 (676)
Q Consensus 612 ~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~ 650 (676)
+.++++++||+.++.+++++++++|++.+.++..++|++
T Consensus 601 ~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~k~y~~ 639 (663)
T PTZ00400 601 QKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAYKQ 639 (663)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999864
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-107 Score=923.37 Aligned_cols=599 Identities=59% Similarity=0.928 Sum_probs=567.8
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++.+|||||+.++|+.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 35999999999999999999999999999999999999999777789999999999999999999999999999998864
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
...+.+||.++...++.+.+..+++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 159 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIA 159 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHc
Confidence 356789999998888887788888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCC--CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKE--GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~--~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 290 (676)
||++++|++||+|||++|+..+.. .++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++|+
T Consensus 160 Gl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~ 239 (653)
T PRK13411 160 GLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQ 239 (653)
T ss_pred CCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986543 389999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHH
Q 005807 291 RTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLK 370 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~ 370 (676)
.+++.++..+++++.+|+.+||++|+.||....+.++++++..+..+..++.+.|||++|++++.|+++++..+|+++|+
T Consensus 240 ~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 319 (653)
T PRK13411 240 QQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALK 319 (653)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999887655445578899999999999999999999999999999
Q ss_pred HcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 371 DANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 371 ~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
++++.+.+|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++..+++.+.|++|++||+++.
T Consensus 320 ~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~ 399 (653)
T PRK13411 320 DAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETL 399 (653)
T ss_pred HcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEec
Confidence 999999999999999999999999999999997 5678899999999999999999999988999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
++.|.+|||||++||++++++|++..|+|+.+.|.||||++..+.+|..||.|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil 479 (653)
T PRK13411 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGIL 479 (653)
T ss_pred CCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.+..||++..+.|....+||++++++++++++++.++|++++++.+++|++|+|||.+++.|+++.+.+++++|++
T Consensus 480 ~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~ 559 (653)
T PRK13411 480 KVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQR 559 (653)
T ss_pred EEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999999999998877789999999999999999999999999999999999999999999987788999999999
Q ss_pred HHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005807 610 IEDAVSDLRKAMAGED--IDGIKAKLDAANKAVSKIGQHMAGGSSD 653 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~--~~~~~~~~~~L~~~~~~i~~~~~~~~~~ 653 (676)
+.+.++++++||++++ .+++++++++|++.+.++..++|+++++
T Consensus 560 i~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 560 AEQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999864 8999999999999999999999975443
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-107 Score=922.17 Aligned_cols=619 Identities=50% Similarity=0.791 Sum_probs=574.3
Q ss_pred CCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCH
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDA 131 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~ 131 (676)
...+||||||||||++|++.++.++++.|..|++.+||+|+|. ++++++|..|+.+...+|.++++.+||+||+.++|+
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~-~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 81 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDS 81 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEEC-CCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCch
Confidence 4569999999999999999999999999999999999999995 557899999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEeCCCCCeEEE--e--CCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHH
Q 005807 132 QTQKEMKMVPFKIVNAPNGDAWVE--A--NGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKD 207 (676)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~v~--~--~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~ 207 (676)
.++...+.+||.++...++...+. . ..+.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 82 VVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred hHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 999999999999988888766544 2 347899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeeChhHHHHHhccccCCC---CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHH
Q 005807 208 AGRIAGLDVQRIINEPTAAALSYGMNNKE---GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEF 284 (676)
Q Consensus 208 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~---~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~ 284 (676)
||++|||++++|++||+|||++|+..+.. .++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999986532 389999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhc-cCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 285 LVSEFKRTE-RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 285 l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
+.++|++++ +.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|++++.|+++++..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~~~ 317 (653)
T PTZ00009 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNTLQ 317 (653)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHHHH
Confidence 999998776 46777889999999999999999999999999999877665 6889999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhccCC----CceeEEEe
Q 005807 364 PCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILRGD----VKELLLLD 438 (676)
Q Consensus 364 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~~~----~~~~~~~d 438 (676)
.|+++|+++++++.+|+.|+||||+||+|+|+++|++.|+ ..+...+||++|||+|||++|+.+++. ++++.+.|
T Consensus 318 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~d 397 (653)
T PTZ00009 318 PVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLD 397 (653)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEe
Confidence 9999999999999999999999999999999999999996 567889999999999999999999873 56899999
Q ss_pred ecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeE
Q 005807 439 VTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIE 518 (676)
Q Consensus 439 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~ 518 (676)
++|++||+++.++.+.+|||+|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+
T Consensus 398 v~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~ 477 (653)
T PTZ00009 398 VTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477 (653)
T ss_pred ecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005807 519 VTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGE 597 (676)
Q Consensus 519 v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~ 597 (676)
|+|++|.||+|+|++.+..|++...+.|... ..|++++++++++++.++.++|+.++++.+++|++|+|||.++++|++
T Consensus 478 v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~ 557 (653)
T PTZ00009 478 VTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQD 557 (653)
T ss_pred EEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999988888754 679999999999999999999999999999999999999999999963
Q ss_pred --hhcCCCHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CCCCCCC
Q 005807 598 --YREKIPGEVAKEIEDAVSDLRKAMAGED---IDGIKAKLDAANKAVSKIGQHMAGGSS-------------DNSASGG 659 (676)
Q Consensus 598 --~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~L~~~~~~i~~~~~~~~~-------------~~~~~g~ 659 (676)
+.+++++++++++.+.++++++||++++ .+++++++++|++.+.++..++|.+++ +++|+|+
T Consensus 558 ~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (653)
T PTZ00009 558 EKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAG 637 (653)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCC
Confidence 7789999999999999999999999763 888999999999999999999986543 2223455
Q ss_pred CCCCCCCCcccceecC
Q 005807 660 SQGGDQAPEAEYEEVK 675 (676)
Q Consensus 660 ~~~~~~~~~~~~~~~~ 675 (676)
.||+|++++|+.|||+
T Consensus 638 ~~~~~~~~~~~~~~~~ 653 (653)
T PTZ00009 638 PAGAGASSGPTVEEVD 653 (653)
T ss_pred CCCCCCCCCCccccCC
Confidence 5556778899999986
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-107 Score=916.38 Aligned_cols=595 Identities=52% Similarity=0.863 Sum_probs=564.2
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||+||++.+|.+.++.|..|++.+||+|+|..++++++|..|+.+...+|.++++.+||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 469999999999999999999999999999999999999997778899999999999999999999999999999865
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEe--CCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEA--NGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
++...+.+||.+..+++|.+.+.. .++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++|++||+
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 159 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGR 159 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 555678899999998888877663 568899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
+|||+++++|+||+|||++|+..+..+ ++||||+||||||+|++++.++.++|+++.|+.++||.+||..|++|+.++|
T Consensus 160 ~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f 239 (668)
T PRK13410 160 IAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQF 239 (668)
T ss_pred HcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHH
Confidence 999999999999999999999876544 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
.++++.++..+++++.+|+.+||++|+.||....+.+.++++..+.++..++...|||++|+++|.++++++..+|+++|
T Consensus 240 ~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L 319 (668)
T PRK13410 240 LEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRAL 319 (668)
T ss_pred HhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99898888889999999999999999999999999999998876555567889999999999999999999999999999
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
+++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++||+++.
T Consensus 320 ~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~ 399 (668)
T PRK13410 320 KDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETI 399 (668)
T ss_pred HHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceec
Confidence 99999999999999999999999999999999998889999999999999999999999988999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
+|.|.+|||||++||++++.+|++..|||+.+.|+||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 400 ~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL 479 (668)
T PRK13410 400 GGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGIL 479 (668)
T ss_pred CCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcCCCHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGE----YREKIPGE 605 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~----~~~~~~~~ 605 (676)
+|++.+..||++..++|....+||++++++++++++++.++|+.++++.++||++|+|||.+++.|.+ +..+++++
T Consensus 480 ~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~ 559 (668)
T PRK13410 480 QVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAER 559 (668)
T ss_pred EEEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHH
Confidence 99999999999999999877889999999999999999999999999999999999999999999953 56789999
Q ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 606 VAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 606 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+|+++...++++++||+.++.+.+++++++|.+.+.++...++.
T Consensus 560 ~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 603 (668)
T PRK13410 560 QRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRA 603 (668)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888877764
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-105 Score=901.78 Aligned_cols=616 Identities=58% Similarity=0.923 Sum_probs=575.4
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
+.+||||||||||++|++.+|.+.++.|..|++.+||+|+|..++++++|..|+.+...+|.++++.+||+||+.+.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 369999999999999999999999999999999999999997778899999999999999999999999999999864
Q ss_pred HHHHhccCCeEEEeCCCCCeEEE--eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
+....+.+||.+...++|.+.+. ..+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 159 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGK 159 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 56667789999998888877765 4678899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
.|||+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.++++++.|+.++||++||..|++|+.++|
T Consensus 160 ~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~ 239 (621)
T CHL00094 160 IAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEF 239 (621)
T ss_pred HcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHH
Confidence 999999999999999999999876544 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
+++++.++..+++++.+|+.+||++|+.||....+.+.++.+..+..+..++...|+|++|++++.++++++..+|+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (621)
T CHL00094 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENAL 319 (621)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888889999999999999999999999999999988765444556788999999999999999999999999999
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
+++++.+.+|+.|+||||+||+|.|++.|++.||.++...+||+++||+|||++|+.+++..+++.+.|++|++||+++.
T Consensus 320 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~ 399 (621)
T CHL00094 320 KDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETL 399 (621)
T ss_pred HHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeecc
Confidence 99999999999999999999999999999999998888999999999999999999999988899999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
++.+.+|||||++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil 479 (621)
T CHL00094 400 GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGIL 479 (621)
T ss_pred CCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.+..|++...+.|....+||+++++++++++.++.++|+..+++.+++|.+|+|+|.+++.|+++.+.+++++|++
T Consensus 480 ~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~ 559 (621)
T CHL00094 480 SVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEK 559 (621)
T ss_pred EEEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999977778899999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccee
Q 005807 610 IEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGSQGGDQAPEAEYEE 673 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 673 (676)
+.+.++++++||+.++.+++++++++|++.+.++..++|.....++ +|.+- +++-+.||.|
T Consensus 560 ~~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~kl~~~~~~~~-~~~~~--~~~~~~~~~~ 620 (621)
T CHL00094 560 IENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYSSTSTTD-PASND--DDVIDTDFSE 620 (621)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCCc--Cceeeccccc
Confidence 9999999999999999999999999999999999999987322332 44444 3445667755
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-103 Score=892.23 Aligned_cols=593 Identities=66% Similarity=1.019 Sum_probs=564.3
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
.+||||||||||++|++.+|.+.++.|..|++.+||+|+|..++++++|..|+.+...+|.++++.+||+||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3899999999999999999999999999999999999999877789999999999999999999999999999984 46
Q ss_pred HHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAG 213 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AG 213 (676)
+...+.+||. +..+++...+..+++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 157 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 157 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 7778899999 556778888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeeChhHHHHHhccccC-CC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 214 LDVQRIINEPTAAALSYGMNN-KE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 214 l~~~~li~Ep~AAal~y~~~~-~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|+++++++||+|||++|+..+ .. .++||||+||||||+|++++.++.++++++.|+..+||.+||..|++|+.++|++
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999875 33 3999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|..++.+.|||++|+++++|+++++..+|+++|++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~ 317 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKD 317 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888999999999999999999999999999998876655555788999999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeCC
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~~ 451 (676)
+++++.+|+.|+||||+||+|+|++.|++.||.++...+||++|||.|||++|+.+++.++++.+.|++|++||+++.++
T Consensus 318 a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 318 AGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred cCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecCC
Confidence 99999999999999999999999999999999888899999999999999999999998899999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.+.+|||+|+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 611 (676)
++.+..++++..+++....+||+++++++++++.++.++|+.++++.+++|++|+|||.+++.|+++.+.+++++++++.
T Consensus 478 ~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~ 557 (595)
T TIGR02350 478 SAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIE 557 (595)
T ss_pred EEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999999999988788999999999999999999999999999999999999999999997677889999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 612 ~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+.++++++||+.++.+++++++++|++.+.++..++|+
T Consensus 558 ~~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~~~~~ 595 (595)
T TIGR02350 558 KAVAELKEALKGEDVEEIKAKTEELQQALQKLAEAMYQ 595 (595)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999988764
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-102 Score=876.65 Aligned_cols=583 Identities=42% Similarity=0.709 Sum_probs=549.5
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQ 134 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~~ 134 (676)
+||||||||||+||++.+|.++++.|..|++.+||+|+|..++++++|..|+.++..+|.++++.+|||||+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999999999999999999999999999998777899999999999999999999999999999877532
Q ss_pred HHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCC
Q 005807 135 KEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGL 214 (676)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl 214 (676)
.+.+||.++..++|.+.+...+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||+.|||
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677899999888888888766668999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhc
Q 005807 215 DVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293 (676)
Q Consensus 215 ~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 293 (676)
+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.+++
T Consensus 158 ~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~---- 233 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQL---- 233 (599)
T ss_pred CceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhh----
Confidence 99999999999999999876544 9999999999999999999999999999999999999999999999999765
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q 005807 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDAN 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~ 373 (676)
+.+...+++.+.+|+.+||++|+.||....+.+.++. .+ .++.+.|||++|+++++|+++++.++|+++|++++
T Consensus 234 ~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g----~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~ 307 (599)
T TIGR01991 234 GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DG----KDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAG 307 (599)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CC----cEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444567888999999999999999999888888764 22 67899999999999999999999999999999999
Q ss_pred CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCC--ceeEEEeecccccceeeeCC
Q 005807 374 ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDV--KELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 374 ~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~--~~~~~~d~~~~s~gi~~~~~ 451 (676)
+.+.+|+.|+||||+||+|+|+++|++.|+..+..++||++|||.|||++|+.+++.. +++.+.|++|++||+++.+|
T Consensus 308 ~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g 387 (599)
T TIGR01991 308 LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGG 387 (599)
T ss_pred CChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCC
Confidence 9999999999999999999999999999998888899999999999999999998753 58999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.|.+|||||++||+++++.|++..|+|+.+.|.|||||+..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 388 ~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V 467 (599)
T TIGR01991 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467 (599)
T ss_pred EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 611 (676)
++.++.||++..+.|....++++++++++++++.+++.+|+..++..+++|++|+++|.+++.+.++.+.+++++|+++.
T Consensus 468 ~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (599)
T TIGR01991 468 SAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAID 547 (599)
T ss_pred EEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999999999988778999999999999999999999999999999999999999999997777789999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcC
Q 005807 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGG 650 (676)
Q Consensus 612 ~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~ 650 (676)
..++++++||++++.++++++.++|++.+.++..+++++
T Consensus 548 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 548 AAMEALQKALQGDDADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999888764
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-104 Score=852.27 Aligned_cols=595 Identities=50% Similarity=0.790 Sum_probs=568.5
Q ss_pred CCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 51 AGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 51 ~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
..+.+||||||||+||++++.++..+++.|..|++.+||+|+|. ++++++|.+|+.+...+|.++++.+||++|+.++|
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~-~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFT-DTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeec-ccccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 34679999999999999999999999999999999999999996 45899999999999999999999999999999999
Q ss_pred HHHHHHhccCCeEEEeCCCCCeEEE----eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHH
Q 005807 131 AQTQKEMKMVPFKIVNAPNGDAWVE----ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATK 206 (676)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~ 206 (676)
+.++..+++|||.+....++.+.+. ...+.++|+++++++|.++++.++.+++..+.++|+|||+||++.||+++.
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~ 163 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATK 163 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHH
Confidence 9999999999999996666666655 234789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeeChhHHHHHhccccCCC--C-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHH
Q 005807 207 DAGRIAGLDVQRIINEPTAAALSYGMNNKE--G-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283 (676)
Q Consensus 207 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~--~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~ 283 (676)
+|+.+|||+++++|+||+|||++|++.++. . +|+|+|+||||||++++.+.+|.+.++++.++.++||++||+.|++
T Consensus 164 ~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 164 DAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 999999999999999999999999987653 2 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
|+..+|+++++.++..+++++.+|+.+||.+|+.||....+.+.++.+.++ .++...++|.+|++++.+++..+..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g----~d~~~~itrarfe~l~~dlf~~~~~ 319 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRSTLE 319 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc----ccccceeehhhhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 7899999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhccCC----CceeEEEe
Q 005807 364 PCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILRGD----VKELLLLD 438 (676)
Q Consensus 364 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~~~----~~~~~~~d 438 (676)
++.++|+++.+++.+|+.|+||||++++|.+|+.++++|+ +.+...+||+++||+|||++|+.+++. ..++.++|
T Consensus 320 ~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid 399 (620)
T KOG0101|consen 320 PVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLID 399 (620)
T ss_pred HHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeee
Confidence 9999999999999999999999999999999999999995 667889999999999999999999883 47899999
Q ss_pred ecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeE
Q 005807 439 VTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIE 518 (676)
Q Consensus 439 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~ 518 (676)
+.|+++||++.++.|.++|++||++|++++++|+++.|||..+.|.||+||+.++++|.++|.|.|.|+||+|+|+++|+
T Consensus 400 ~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ie 479 (620)
T KOG0101|consen 400 VAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 479 (620)
T ss_pred cccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005807 519 VTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGE 597 (676)
Q Consensus 519 v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~ 597 (676)
++|.+|.||+|+|++.|+.|||...++|++. +.||.++|++|..+++.++.+|...+.+.+++|.||+|+|+++..+++
T Consensus 480 vtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~ 559 (620)
T KOG0101|consen 480 VTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVED 559 (620)
T ss_pred EEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999886 679999999999999999999999999999999999999999999986
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHhcC
Q 005807 598 YREKIPGEVAKEIEDAVSDLRKAMAGED---IDGIKAKLDAANKAVSKIGQHMAGG 650 (676)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~L~~~~~~i~~~~~~~ 650 (676)
..++++++++.++.+.++++.+||+.++ .++++++.++|+..|.|++.++|++
T Consensus 560 ~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 560 EKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 6689999999999999999999999976 8999999999999999999999985
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-101 Score=868.31 Aligned_cols=582 Identities=41% Similarity=0.688 Sum_probs=544.9
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|+++ .++||..|+.+...+|.++++.+||+||+.+.+
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 36999999999999999999999999999999999999999755 499999999999999999999999999999876
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.+....+|.+.+...+..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++||++|
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 175 (616)
T PRK05183 96 IQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLA 175 (616)
T ss_pred hhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 34556788999988878888887666689999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
||+++++++||+|||++|+.....+ +++|||+||||||+|++++.++.++++++.|+.++||.+||..|++|+.++|+.
T Consensus 176 Gl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~ 255 (616)
T PRK05183 176 GLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGL 255 (616)
T ss_pred CCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999876544 999999999999999999999999999999999999999999999999987753
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+...+++++.+|+.+||++|+.||....+.+.++.+ ...|||++|++++.|+++++..+++++|++
T Consensus 256 ----~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~efe~l~~~l~~~~~~~i~~~L~~ 321 (616)
T PRK05183 256 ----SPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQFNALIAPLVKRTLLACRRALRD 321 (616)
T ss_pred ----CcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578889999999999999999998888877421 124999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC--CceeEEEeecccccceeee
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~--~~~~~~~d~~~~s~gi~~~ 449 (676)
+++.+.+|+.|+||||+||+|+|++.|+++||..+...+||++|||+|||++|+.+++. .+++.+.|++|++||+++.
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~~ 401 (616)
T PRK05183 322 AGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETM 401 (616)
T ss_pred cCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccceec
Confidence 99999999999999999999999999999999888889999999999999999999875 4589999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
+|.|.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|
T Consensus 402 ~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil 481 (616)
T PRK05183 402 GGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLL 481 (616)
T ss_pred CCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.++.||++..+.|....+||+++|+++++++++++.+|+..+++.+++|++|.++|.+++.+++..+.+++++|++
T Consensus 482 ~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 561 (616)
T PRK05183 482 SVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAA 561 (616)
T ss_pred EEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999999999999877789999999999999999999999999999999999999999999976667899999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005807 610 IEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGS 651 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~ 651 (676)
+.+.++++++||+.+|.+.+++++++|++.+.++..++++..
T Consensus 562 ~~~~l~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 603 (616)
T PRK05183 562 IDAAMAALREVAQGDDADAIEAAIKALDKATQEFAARRMDRS 603 (616)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999888743
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-97 Score=828.52 Aligned_cols=556 Identities=35% Similarity=0.559 Sum_probs=500.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC--
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND-- 130 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d-- 130 (676)
..+||||||||||++|++.++.++++.|..|++.+||+|+|.+ +.++||..| +++++||++|+.+++
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~-~~~~vG~~A----------ti~~~KrliG~~~~~~~ 87 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTS-NNFTIGNNK----------GLRSIKRLFGKTLKEIL 87 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcC-CCEEECchh----------hHHHHHHHhCCCchhhc
Confidence 4699999999999999999999999999999999999999964 458999987 789999999999875
Q ss_pred --HHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 005807 131 --AQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDA 208 (676)
Q Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~A 208 (676)
+.+....+. ......+...+..+++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 88 ~~~~~~~~~k~----~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 88 NTPALFSLVKD----YLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred cchhhHhhhhh----eeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 322222221 11222334456677889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 005807 209 GRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS 287 (676)
Q Consensus 209 a~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 287 (676)
|+.|||+++++++||+|||++|+...... ++||||+||||||+|++++.++.++|+++.|+.++||++||.+|++|+..
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~ 243 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCN 243 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHH
Confidence 99999999999999999999999876543 89999999999999999999999999999999999999999999999998
Q ss_pred HhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHH
Q 005807 288 EFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKN 367 (676)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~ 367 (676)
+|.. ..+.. .+..||++|+.||....... ..+.|||++|+++++|+++++..++++
T Consensus 244 ~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~i~~ 299 (595)
T PRK01433 244 KFDL------PNSID----TLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINIAQE 299 (595)
T ss_pred hcCC------CCCHH----HHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 8742 12222 23459999999998764211 268899999999999999999999999
Q ss_pred HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeeccccccee
Q 005807 368 CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIE 447 (676)
Q Consensus 368 ~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~ 447 (676)
+|++++ ..+|+.|+||||+||+|+|++.|++.||.++..+.||+++||+|||++|+.+++...++.+.|++|+|||++
T Consensus 300 ~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~ 377 (595)
T PRK01433 300 CLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGME 377 (595)
T ss_pred HHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEE
Confidence 999998 578999999999999999999999999988888999999999999999999988778899999999999999
Q ss_pred eeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCc
Q 005807 448 TLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANG 527 (676)
Q Consensus 448 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g 527 (676)
+.+|.|.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.++|.++|+|+|++|.||
T Consensus 378 ~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~G 457 (595)
T PRK01433 378 LYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADG 457 (595)
T ss_pred ecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHH
Q 005807 528 IVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVA 607 (676)
Q Consensus 528 ~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~ 607 (676)
+|+|++.+..||++..+.|....+||++|+++++++++++.++|..+++..+++|+++.+++..++.++++.+.+++++|
T Consensus 458 il~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 537 (595)
T PRK01433 458 ILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEI 537 (595)
T ss_pred cEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 99999999999999999998777899999999999999999999999999999999999999999999877778999999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH--------HHHHHhc
Q 005807 608 KEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSK--------IGQHMAG 649 (676)
Q Consensus 608 ~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~--------i~~~~~~ 649 (676)
+++.+.++++++||+.+|...+++++++|++.+.+ ++.++|+
T Consensus 538 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 587 (595)
T PRK01433 538 SIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLLK 587 (595)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 99999999999999988877777666666655544 5566664
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-96 Score=812.18 Aligned_cols=573 Identities=62% Similarity=0.926 Sum_probs=546.9
Q ss_pred CCceEEEEcCCceEEEEEEECC-ceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGK-NPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~-~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
...+|||||||||||||+++++ .+.++.|..|.+.+||+|+|..++++++|..|+.++..+|.++++.+||++|+...
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 3579999999999999999988 79999999999999999999877789999999999999999999999999998711
Q ss_pred HHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 131 AQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
.....+..+++.++|+++++++|++|++.++.+++..+.++|||||+||++.||+++++|++
T Consensus 83 ------------------~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~ 144 (579)
T COG0443 83 ------------------GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAAR 144 (579)
T ss_pred ------------------CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHH
Confidence 01134556678999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
+|||+++++++||+|||++|+.+...+ +|+|||+||||||+|++++.++.++++++.|+.++||++||.+|.+|+..+|
T Consensus 145 iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f 224 (579)
T COG0443 145 IAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEF 224 (579)
T ss_pred HcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHh
Confidence 999999999999999999999998665 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
+.+++.++..++.++.+|+.+||++|+.||....+.++++++..+ .++...|+|++||+++.+++.++...+..++
T Consensus 225 ~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~al 300 (579)
T COG0443 225 KGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQAL 300 (579)
T ss_pred hccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887655 6788999999999999999999999999999
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeee
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETL 449 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~ 449 (676)
.+++++..+|+.|+||||++|||.|++.++++|+.++...+||+++||.|||++|+.+++..++++++|++|+|+|+++.
T Consensus 301 ~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~~ 380 (579)
T COG0443 301 KDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETL 380 (579)
T ss_pred HHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeeccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccE
Q 005807 450 GGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIV 529 (676)
Q Consensus 450 ~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l 529 (676)
++.+..+|++|+.+|+++...|.+..|+|+.+.+++++||+....+|..+|.|.+.++||.++|.++|+|+|.+|.||++
T Consensus 381 ~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~ 460 (579)
T COG0443 381 GGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGIL 460 (579)
T ss_pred cchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHH
Q 005807 530 TVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKE 609 (676)
Q Consensus 530 ~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~ 609 (676)
+|++.++.+|+...++|....+|++++|+.|.++++.+++.|+..++..+.+|.++.+++.+++.|.+.. .++++++++
T Consensus 461 ~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 539 (579)
T COG0443 461 NVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEK 539 (579)
T ss_pred EeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHH
Confidence 9999999999999999998877999999999999999999999999999999999999999999998776 899999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 610 IEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 610 ~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+...+.++++|++++ .++++.+.++|+....++.++.|+
T Consensus 540 ~~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 540 IEEAITDLEEALEGE-KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999985 889999999999999999988775
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-92 Score=807.89 Aligned_cols=591 Identities=47% Similarity=0.775 Sum_probs=537.9
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQ 134 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~~ 134 (676)
|||||||||||+||++.++.++++.|..|++.+||+|+|.++ ++++|..|...+.++|.++++++|+|||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999654 8999999999999999999999999999999999999
Q ss_pred HHhccCCeEEEeCCCCCeEEE--eCCe--eeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 135 KEMKMVPFKIVNAPNGDAWVE--ANGQ--QYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~v~--~~~~--~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
...+.+||.+..+++|...+. ..+. .++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 999999999999888877765 3454 899999999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCC--CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKE--GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~--~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
.|||+++++|+||+|||++|+..+.. +++||||+||||+|++++++.++.++++++.++..+||.+||..|++|+.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887655 3999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCccCHHHHHHHHHHHHHHHHHcCC--CCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHH
Q 005807 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSS--TSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCK 366 (676)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~ 366 (676)
|+.+++.++..+++.+.+|+.+||++|+.||. .....+.++.+..+ + .++.+.|||++|++++.|+++++..+|+
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~--~-~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDD--G-EDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETT--T-EEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--c-cccccccccceecccccccccccccccc
Confidence 99999989888999999999999999999999 45555666555542 2 7899999999999999999999999999
Q ss_pred HHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC--CCceeEEEeeccccc
Q 005807 367 NCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG--DVKELLLLDVTPLSL 444 (676)
Q Consensus 367 ~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~--~~~~~~~~d~~~~s~ 444 (676)
++|++++++..+|+.|+||||+||+|+|++.|++.|+..+..++||++|||+|||++|+.+++ ..+++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999987888999999999999999999988 567889999999999
Q ss_pred ceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEc
Q 005807 445 GIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDID 524 (676)
Q Consensus 445 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d 524 (676)
||+..++.+.+++++|+++|...+..|.+..++|+.+.|.||+|+.....+|..||++.|.++++.+.|.++|+++|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCH
Q 005807 525 ANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPG 604 (676)
Q Consensus 525 ~~g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~ 604 (676)
.+|+|+|++.+..+++...+.+.....+++++++++.++++++..+|+.++++.+++|++|+++|++++.+++..+.+++
T Consensus 477 ~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~ 556 (602)
T PF00012_consen 477 ENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSE 556 (602)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTH
T ss_pred eeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCH
Confidence 99999999999999999889988776699999999999999999999999999999999999999999999776778888
Q ss_pred HHH-HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 605 EVA-KEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 605 ~~~-~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
+++ +++++..+++.+|.+..+.+++++++++|++...+|..++|+
T Consensus 557 ~~~~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 557 EEKKKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 776 677777777777776667999999999999999999999875
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-82 Score=670.34 Aligned_cols=578 Identities=31% Similarity=0.537 Sum_probs=526.2
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
.++|||||..+|.+|+.+.++.++|.|+.++|.||++|+|. ...+++|.+|+.+...|+.|++..+||++|+.|+||.+
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg-~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFG-PKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeec-cccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 39999999999999999999999999999999999999995 55799999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEeCCCCCeEEE----eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVE----ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG 209 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa 209 (676)
+.+.+.+|++++.+++|.+.+. .....++|++|++|+|.+|+..+++.+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 9999999999999999988765 455789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEeeChhHHHHHhccccCCC--------CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 210 RIAGLDVQRIINEPTAAALSYGMNNKE--------GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~~~~~--------~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
++|||+.+++++|.+|+|++||..+.+ .+|+++|+|.+++.+|++.+..|.++++++.+|.++||.+||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999988532 279999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHH
Q 005807 282 LEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERT 361 (676)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i 361 (676)
.+|++.+|+.++++++..+++++.||+..||+.|+.||.+...++++++++++ .+.+..|+|++||+++.|+++++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~rv 316 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLERV 316 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec----chhhhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988 78899999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC--CCceeEEEee
Q 005807 362 KAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG--DVKELLLLDV 439 (676)
Q Consensus 362 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~--~~~~~~~~d~ 439 (676)
..++.++|+++++..+||+.|.+|||+||+|.|+++|.++||+++.+++|.++|||+|||+++|++++ +++++.+.|+
T Consensus 317 ~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di 396 (727)
T KOG0103|consen 317 EVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDI 396 (727)
T ss_pred hHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 5789999999
Q ss_pred cccccceeee----C-CeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecC-ccccccccceeEEEEcCCCCCCCC
Q 005807 440 TPLSLGIETL----G-GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGE-REMAADNKALGEFELMGIPPAPRG 513 (676)
Q Consensus 440 ~~~s~gi~~~----~-~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge-~~~~~~~~~lg~~~l~~~~~~~~g 513 (676)
.|+++.+... + +....+||+|.++|.++..||.... .|.+.+++.. ..++.....|+++.+.++.+...|
T Consensus 397 ~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~g 472 (727)
T KOG0103|consen 397 VPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDG 472 (727)
T ss_pred cceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccc
Confidence 9999988743 2 5557899999999999999988765 4888887766 455545578999999998887774
Q ss_pred -CCeeEEEEEEcCCccEEEEEEe----------------------------cCCC----ceeeEEecc--CCCCCHHHHH
Q 005807 514 -IPQIEVTFDIDANGIVTVSAKD----------------------------KATG----KEQQITIRS--SGGLSESEIE 558 (676)
Q Consensus 514 -~~~i~v~f~~d~~g~l~v~~~~----------------------------~~t~----~~~~~~i~~--~~~~~~~~i~ 558 (676)
..++.|...++.+|+++|.-.- +..+ +...+.+.. .++++..+++
T Consensus 473 e~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~ 552 (727)
T KOG0103|consen 473 EFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELE 552 (727)
T ss_pred cccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHH
Confidence 5789999999999999886310 0011 122333433 3579999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCHHHHHHHHHHHHHHHHhhccCC----hHHHHHHH
Q 005807 559 KMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG-EYREKIPGEVAKEIEDAVSDLRKAMAGED----IDGIKAKL 633 (676)
Q Consensus 559 ~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~wl~~~~----~~~~~~~~ 633 (676)
..++.+.+|..+|+...++.++||.+|+|||++|++|. .|.++++++++++|...|+++++|||+++ ...|..++
T Consensus 553 ~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl 632 (727)
T KOG0103|consen 553 LYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKL 632 (727)
T ss_pred HHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 99999999999999999999999999999999999995 68889999999999999999999999875 56666777
Q ss_pred HHHHHHH
Q 005807 634 DAANKAV 640 (676)
Q Consensus 634 ~~L~~~~ 640 (676)
++|+...
T Consensus 633 ~elk~~g 639 (727)
T KOG0103|consen 633 EELKKLG 639 (727)
T ss_pred HHHHhhh
Confidence 7777555
|
|
| >KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-71 Score=586.21 Aligned_cols=582 Identities=29% Similarity=0.444 Sum_probs=504.6
Q ss_pred CCceEEEEcCCceEEEEEEECCceE-EEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGKNPK-VIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~~~~-vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
...|++||+||.+++++++++|-|. ++.|...+|++|++|+| .+|+|+||.+|.....++|.+++..++.|+|+...+
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vaf-k~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAF-KGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEe-cCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 4569999999999999999998875 88899999999999999 688999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-eEEEeCC-CCCeEEEeCC-eeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHH
Q 005807 131 AQTQKEMKMVP-FKIVNAP-NGDAWVEANG-QQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKD 207 (676)
Q Consensus 131 ~~~~~~~~~~~-~~~~~~~-~~~~~v~~~~-~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~ 207 (676)
|.+....+.+| |.++.++ .+.+.+...+ ..|+++++++|+|.+.+..|+.+...++.++|||||.||++.||+++.+
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 98888877666 5677665 5566677666 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeeChhHHHHHhccccCCC------CeEEEEeeCCceeEEEEEEEe----------CCeEEEEEecCCCC
Q 005807 208 AGRIAGLDVQRIINEPTAAALSYGMNNKE------GLIAVFDLGGGTFDVSVLEIS----------NGVFEVKATNGDTF 271 (676)
Q Consensus 208 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~------~~vlV~D~GgGT~Dvsv~~~~----------~~~~~v~~~~g~~~ 271 (676)
||++||++++.||+|-+|||+.|+..+.. .+++|||||+|++.++++.+. ...+++++...|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 99999999999999999999999998522 299999999999999999874 14789999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhcc--CCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHH
Q 005807 272 LGGEDFDNALLEFLVSEFKRTER--IDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349 (676)
Q Consensus 272 lGG~~~D~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~ 349 (676)
|||..|.++|.+|+.+.|.+.++ .++..+++++.+|.++|+++|..||.+..+.++++.+.++ .|+...|||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~kvTRe~ 335 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRLKVTREE 335 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc----cccccceeHHH
Confidence 99999999999999999998775 4677899999999999999999999999999999999988 89999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhcc
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILR 428 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~ 428 (676)
||++|.++..++..+|.++|..++++..+|+.|+|.||++|+|.||+.|.++.| .++...+|.|||+++||+++|+.|+
T Consensus 336 fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS 415 (902)
T KOG0104|consen 336 FEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS 415 (902)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999998 4578899999999999999999999
Q ss_pred C--CCceeEEEeecccccceeeeCC--------eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccc
Q 005807 429 G--DVKELLLLDVTPLSLGIETLGG--------IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKA 498 (676)
Q Consensus 429 ~--~~~~~~~~d~~~~s~gi~~~~~--------~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~ 498 (676)
. +++++.+.|.++++|-++..+. .-..+|++|.++|.++..+|+.+.|+ +.+.+-.|.-. ..
T Consensus 416 ksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~n 487 (902)
T KOG0104|consen 416 KSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QN 487 (902)
T ss_pred ccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cC
Confidence 8 4679999999999888765543 22358999999999988888776663 44433322211 22
Q ss_pred eeEEEEcCCCCCC----C---CCCeeEEEEEEcCCccEEEEEEec---------------------CC------------
Q 005807 499 LGEFELMGIPPAP----R---GIPQIEVTFDIDANGIVTVSAKDK---------------------AT------------ 538 (676)
Q Consensus 499 lg~~~l~~~~~~~----~---g~~~i~v~f~~d~~g~l~v~~~~~---------------------~t------------ 538 (676)
+-+|+|.++.... . ....|.++|.+|.+|++.|+..+. +|
T Consensus 488 l~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~ 567 (902)
T KOG0104|consen 488 LTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQ 567 (902)
T ss_pred ccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccc
Confidence 3477777765321 1 134699999999999998875320 00
Q ss_pred -----------Cc--------------------------------------eeeEEeccC----CCCCHHHHHHHHHHHH
Q 005807 539 -----------GK--------------------------------------EQQITIRSS----GGLSESEIEKMVKEAE 565 (676)
Q Consensus 539 -----------~~--------------------------------------~~~~~i~~~----~~~~~~~i~~~~~~~~ 565 (676)
++ .+.+.|+.. ..|++..++.....++
T Consensus 568 ~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~ 647 (902)
T KOG0104|consen 568 EEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLE 647 (902)
T ss_pred hhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHH
Confidence 00 012445432 4589999999999999
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhcCCCHHHHHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHH
Q 005807 566 LHAQRDQERKTLIDIRNNADTTIYSIEKSLG--EYREKIPGEVAKEIEDAVSDLRKAMAGED----IDGIKAKLDAANKA 639 (676)
Q Consensus 566 ~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~wl~~~~----~~~~~~~~~~L~~~ 639 (676)
.+.+.|+.+.++.++-|+||.|+|.++..|. +|.++.+++++.+|...+..+.+||+.+. .+.+.+++.+|++.
T Consensus 648 d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l 727 (902)
T KOG0104|consen 648 DFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKL 727 (902)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 56788999999999999999999998864 78888999999988
Q ss_pred HHHHHHH
Q 005807 640 VSKIGQH 646 (676)
Q Consensus 640 ~~~i~~~ 646 (676)
+..+..+
T Consensus 728 ~~~~~~R 734 (902)
T KOG0104|consen 728 ETSKNFR 734 (902)
T ss_pred HhhhhHH
Confidence 8776644
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=480.70 Aligned_cols=338 Identities=27% Similarity=0.381 Sum_probs=290.4
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEc---------------------------------------
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFN--------------------------------------- 94 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~--------------------------------------- 94 (676)
+++|||||||||++|++.++.++++++..|.+.+||+|+|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 37999999999999999999999999999999999999995
Q ss_pred -cCCcEEEcHHHHHhhhhCCCch--HHHhhhhhcCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHH
Q 005807 95 -QKGELLVGTPAKRQAVTNPANT--LFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVL 171 (676)
Q Consensus 95 -~~~~~~~G~~A~~~~~~~p~~~--~~~~K~llg~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L 171 (676)
.+++.++|..|++++..+|.++ +..+|++||...-.+ +....++++++++|
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~--------------------------~~~~~~e~l~a~iL 134 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP--------------------------QQVALFEDLVCAMM 134 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc--------------------------cceeCHHHHHHHHH
Confidence 2456789999999999999988 679999999753111 12234899999999
Q ss_pred HHHHHHHHHHhCCCCCeEEEEeCCCCC-----HHHHHH---HHHHHHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEE
Q 005807 172 TKMKETAESYLGKSVSEAVITVPAYFN-----DAQRQA---TKDAGRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVF 242 (676)
Q Consensus 172 ~~l~~~a~~~l~~~~~~~VITVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~ 242 (676)
++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+.....+ .+|||
T Consensus 135 ~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~ 214 (450)
T PRK11678 135 LHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVV 214 (450)
T ss_pred HHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEE
Confidence 999999999999999999999999998 778766 699999999999999999999999999765444 99999
Q ss_pred eeCCceeEEEEEEEeCC-------eEEEEEecCCCCcchHHHHHHHH-HHHHHHhhh----hccCCC-------------
Q 005807 243 DLGGGTFDVSVLEISNG-------VFEVKATNGDTFLGGEDFDNALL-EFLVSEFKR----TERIDL------------- 297 (676)
Q Consensus 243 D~GgGT~Dvsv~~~~~~-------~~~v~~~~g~~~lGG~~~D~~l~-~~l~~~~~~----~~~~~~------------- 297 (676)
|+||||+|+|++++.++ ..+++++.| ..+||+|||..|+ +++...|+. +.+.++
T Consensus 215 D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~ 293 (450)
T PRK11678 215 DIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293 (450)
T ss_pred EeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhc
Confidence 99999999999998654 468999998 6899999999998 677777742 111110
Q ss_pred ----------------------ccCHHHH------------HHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEE
Q 005807 298 ----------------------SQDKLAL------------QRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNI 343 (676)
Q Consensus 298 ----------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~ 343 (676)
..+++.+ .+|+.+||++|+.||....+.+.++.+. .++..
T Consensus 294 i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~ 367 (450)
T PRK11678 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLAT 367 (450)
T ss_pred cchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCcce
Confidence 0123223 3688999999999999999999888653 34679
Q ss_pred EEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 344 TLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 344 ~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
.|||++|+++++|+++++..+|+++|+++++. ++.|+||||+|++|.|++.|++.||..+....+|.++||.|+|++
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARW 444 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHH
Confidence 99999999999999999999999999999975 489999999999999999999999877777889999999999999
Q ss_pred hhhc
Q 005807 424 GGIL 427 (676)
Q Consensus 424 a~~l 427 (676)
|..+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 8753
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=337.88 Aligned_cols=309 Identities=25% Similarity=0.358 Sum_probs=238.5
Q ss_pred EEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-CcE-EEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GEL-LVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 56 vGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-~~~-~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
+||||||++|+++.. ++..++. .||+|+|+.+ +.. .+|..|+......|.+.... +
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------R------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------c-------
Confidence 899999999999875 4555554 5999999854 344 69999988766666553210 0
Q ss_pred HHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAG 213 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AG 213 (676)
|+ . ++ .+...++...+|+++.+.+..........+|||||++|++.+|+++++|++.||
T Consensus 64 -------pi-----~--------~G-~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 64 -------PL-----R--------DG-VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred -------cC-----C--------CC-eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 10 0 11 233445677778888766543322334479999999999999999999999999
Q ss_pred CCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhh
Q 005807 214 LDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRT 292 (676)
Q Consensus 214 l~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~ 292 (676)
++++.+++||+|||++|+.+...+ .++|||+||||||++++...... ..++.++||.+||+.|.+++..+|+..
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~ 197 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLL 197 (336)
T ss_pred CCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchh
Confidence 999999999999999999865444 79999999999999999875422 356789999999999999999777421
Q ss_pred ccCCCccCHHHHHHHHHHHHHHHHHcCCCC----ceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHH
Q 005807 293 ERIDLSQDKLALQRLRESAEKAKIELSSTS----QTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNC 368 (676)
Q Consensus 293 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~ 368 (676)
.+ ...||++|+.++... ...+.+.. .+........+.|+|++|++++.+.++++.+.|.+.
T Consensus 198 ~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~ 262 (336)
T PRK13928 198 IG-------------ERTAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSV 262 (336)
T ss_pred cC-------------HHHHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 257999999987542 12222211 111111455789999999999999999999999999
Q ss_pred HHHcC--CCcCCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 369 LKDAN--ITIKDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 369 l~~~~--~~~~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
|+.++ +....++ .|+|+||+|++|.++++|++.|+.++....||+++||+|||+++..+
T Consensus 263 l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 263 LERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99986 3345677 79999999999999999999999988888999999999999998764
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=334.17 Aligned_cols=307 Identities=25% Similarity=0.351 Sum_probs=242.2
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCc--EEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGE--LLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~--~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
.+||||||+|+++ +.+++.. +.| .||+|+++.++. ..+|.+|+.+..++|.++... +-+
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi-------- 66 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPM-------- 66 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecC--------
Confidence 6999999999985 4555554 334 399999975543 579999999888888774331 111
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCC--eEEEEeCCCCCHHHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVS--EAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~--~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
. +|. +..-++++.+|++++..++.+++..+. .+|||||++|++.||+++.+|++
T Consensus 67 ---------------~--------~G~-I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~ 122 (335)
T PRK13929 67 ---------------K--------DGV-IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVK 122 (335)
T ss_pred ---------------C--------CCc-cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 0 111 223378899999999998888876553 79999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
.||++++.+++||+|||++|+...... .++|+|+||||+|++++...+-. ..++..+||.+||+.|.+++...+
T Consensus 123 ~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~ 197 (335)
T PRK13929 123 NCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKY 197 (335)
T ss_pred HcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765444 89999999999999999865432 355678999999999999998765
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCC----ceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTS----QTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPC 365 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i 365 (676)
. .... ...||++|+.++... ...+.+.. .+........+.+++++|++++.+++.++.+.|
T Consensus 198 ~----~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g--~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i 262 (335)
T PRK13929 198 N----LLIG---------ERTAEQVKMEIGYALIEHEPETMEVRG--RDLVTGLPKTITLESKEIQGAMRESLLHILEAI 262 (335)
T ss_pred C----cCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeC--CccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 3 1111 257999999998742 11222211 111111346789999999999999999999999
Q ss_pred HHHHHHcCCC--cCCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHh
Q 005807 366 KNCLKDANIT--IKDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 366 ~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a 424 (676)
.+.|+++... ...++ .|+|+||+|++|.+++++++.|+.++....||+++|+.||+..-
T Consensus 263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999998643 35577 69999999999999999999999988888999999999999863
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=316.80 Aligned_cols=308 Identities=25% Similarity=0.351 Sum_probs=228.4
Q ss_pred EEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-----Cc-EEEcHHHHHhhhhCCCchHHHhhhhhcCCCC
Q 005807 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-----GE-LLVGTPAKRQAVTNPANTLFGTKRLIGRRFN 129 (676)
Q Consensus 56 vGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-----~~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 129 (676)
+||||||+||++++.. ...++ ..||+|+|..+ ++ ..+|..|+..+.+.|.+.. +++-+.
T Consensus 5 ~giDlGt~~s~i~~~~--~~~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG--RGIVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECC--CCEEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC----
Confidence 9999999999998743 23343 26999999744 22 6699999887666665531 122111
Q ss_pred CHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 005807 130 DAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG 209 (676)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa 209 (676)
++...++ +.+..+++++........+.....+|+|||++|+..+|+++++|+
T Consensus 70 ---------------------------~G~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 70 ---------------------------DGVIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred ---------------------------CCEEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 1222222 334445555554443322222238999999999999999999999
Q ss_pred HHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 210 RIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
+.||++.+.+++||+|||++|+...... .++|||+||||||+++++..+.. ..++.++||++||+.|.+++.++
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765444 88999999999999999876533 24567899999999999999876
Q ss_pred hhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCce-----eeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQT-----EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-----~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
+. .... +..||++|+.++..... .+.+.. .+..........+++++|.+++.+.++++.+
T Consensus 197 ~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 261 (333)
T TIGR00904 197 YN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVE 261 (333)
T ss_pred hc----ccCC---------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 53 1111 25799999999764221 222111 1100112345789999999999999999999
Q ss_pred HHHHHHHHcCCCc-CCC-c-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 364 PCKNCLKDANITI-KDV-D-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 364 ~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
.+.+.++.++... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||+++...
T Consensus 262 ~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 262 AVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999876532 233 3 7999999999999999999999998988999999999999998654
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=317.19 Aligned_cols=308 Identities=25% Similarity=0.359 Sum_probs=229.9
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-Cc-EEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GE-LLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-~~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
.|||||||++++++. .+...++ .+||+|++..+ ++ .++|..|+.+...+|.++.. .+
T Consensus 7 ~igIDlGt~~~~i~~--~~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~--~~---------- 65 (334)
T PRK13927 7 DLGIDLGTANTLVYV--KGKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVA--IR---------- 65 (334)
T ss_pred eeEEEcCcceEEEEE--CCCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEE--Ee----------
Confidence 699999999999854 3333333 26999999755 33 58999999887666655211 10
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
|+ . +|...+. +.+..+++++......... ....+|+|||++|++.+|+++++|++.|
T Consensus 66 --------pi-----~--------~G~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~a 122 (334)
T PRK13927 66 --------PM-----K--------DGVIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGA 122 (334)
T ss_pred --------cC-----C--------CCeecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 10 0 1122222 3345555665554433321 1248999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|++.+.+++||+|||++|+...... .++|||+||||||+++++..+.. ..++..+||.+||+.|.+++.+++..
T Consensus 123 g~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~~ 197 (334)
T PRK13927 123 GAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYNL 197 (334)
T ss_pred CCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999865444 78999999999999999876533 24557899999999999999876631
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCc----eeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQ----TEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKN 367 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~ 367 (676)
... ...+|++|+.++.... ..+.+.. .+.....+..+.|+|++|++++.+.++++.+.|.+
T Consensus 198 ----~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~ 262 (334)
T PRK13927 198 ----LIG---------ERTAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLSAIVEAVKV 262 (334)
T ss_pred ----CcC---------HHHHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2468999999886432 2222211 01001134578999999999999999999999999
Q ss_pred HHHHcCCCc--CCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 368 CLKDANITI--KDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 368 ~l~~~~~~~--~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+|++++... ..++ .|+|+||+|++|.++++|++.|+.++....||+++||.||++++..
T Consensus 263 ~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 263 ALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 999986432 2234 5999999999999999999999988888899999999999999765
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=309.30 Aligned_cols=309 Identities=25% Similarity=0.346 Sum_probs=233.4
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-C-cEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-G-ELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-~-~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
.+||||||++++++++.+ ..++. +||+|++..+ + ..++|..|+......|.+.. +++
T Consensus 10 ~vgiDlGt~~t~i~~~~~--~~~~~-------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~---------- 68 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGK--GIVLN-------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIR---------- 68 (335)
T ss_pred ceEEEcCCCcEEEEECCC--CEEEe-------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Eee----------
Confidence 499999999999988633 23331 5999999642 3 36899999987655554421 110
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
|+ . +|...+ .+....+++++.+.+..........+|+|+|++|+..+|+++.+|++.+
T Consensus 69 --------pi-----~--------~G~i~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~ 126 (335)
T PRK13930 69 --------PL-----K--------DGVIAD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHA 126 (335)
T ss_pred --------cC-----C--------CCeEcC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHc
Confidence 11 1 122222 3457778888876665544444678999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|++.+.+++||+|||++|+...... .++|||+||||||++++...... ..+...+||.+||+.|.+++.+++.
T Consensus 127 g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~~- 200 (335)
T PRK13930 127 GAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKYN- 200 (335)
T ss_pred CCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHhC-
Confidence 9999999999999999998764433 68999999999999998765432 2456899999999999999987653
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCce----eeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQT----EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKN 367 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~ 367 (676)
.... ...||++|+.++..... .+.+.. .+........+.|++++|++++.+.++++.+.|.+
T Consensus 201 ---~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~ 266 (335)
T PRK13930 201 ---LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKS 266 (335)
T ss_pred ---CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 25789999999865322 222211 11111133578899999999999999999999999
Q ss_pred HHHHcCCCc--CCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 368 CLKDANITI--KDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 368 ~l~~~~~~~--~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+++.+.... ..++ .|+|+||+|++|.++++|++.|+.++....+|++++|.||++.+..
T Consensus 267 ~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 267 VLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 999875332 2345 4999999999999999999999998888889999999999999765
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=278.98 Aligned_cols=310 Identities=27% Similarity=0.368 Sum_probs=216.6
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC-c-EEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG-E-LLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~-~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
-+||||||+++.++. .+...++. .||+|+++.+. + ..+|.+|+..+.+.|.+...
T Consensus 3 ~igIDLGT~~t~i~~--~~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-------------- 59 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-------------- 59 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------
T ss_pred ceEEecCcccEEEEE--CCCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------
Confidence 689999999999844 33333332 29999997653 3 44999998776666554100
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
.+|. .+| .+.--++...+|+++.+.+.......-.+++|+||+.-++.+|+++.+|+..|
T Consensus 60 ------~~Pl-------------~~G-vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~a 119 (326)
T PF06723_consen 60 ------VRPL-------------KDG-VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQA 119 (326)
T ss_dssp ------E-SE-------------ETT-EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHT
T ss_pred ------Eccc-------------cCC-cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 0010 112 23334677888888888776643334568999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|...+.++.||.|||+..+.+-... ..||+|+||||||++++...+-.. +.....||++||++|.+|+.++|.-
T Consensus 120 Ga~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~-----s~si~~gG~~~DeaI~~~ir~~y~l 194 (326)
T PF06723_consen 120 GARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA-----SRSIRIGGDDIDEAIIRYIREKYNL 194 (326)
T ss_dssp T-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE-----EEEES-SHHHHHHHHHHHHHHHHSE
T ss_pred CCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE-----EEEEEecCcchhHHHHHHHHHhhCc
Confidence 9999999999999999999886554 889999999999999986443221 3336789999999999999998841
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCce--eeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQT--EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCL 369 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~--~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l 369 (676)
..-...||++|+.++..... ...+.....+...+..-.+.++-+++.+.+.+.+.+|.+.|+++|
T Consensus 195 -------------~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~L 261 (326)
T PF06723_consen 195 -------------LIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVL 261 (326)
T ss_dssp -------------E--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12236899999998865321 112222222222235678999999999999999999999999999
Q ss_pred HHcCCCc-CCC--cEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhh
Q 005807 370 KDANITI-KDV--DEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 370 ~~~~~~~-~~i--~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~ 425 (676)
+...... .|| ++|+|+||+|+++.+.++|++.++.++....||.++|+.||.....
T Consensus 262 e~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 262 EKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 9864321 233 6799999999999999999999999999999999999999987654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=241.23 Aligned_cols=313 Identities=25% Similarity=0.329 Sum_probs=236.8
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC--Cc--EEEcHHHHHhhhhCCCchHHHhhhhhcCCCC
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK--GE--LLVGTPAKRQAVTNPANTLFGTKRLIGRRFN 129 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~--~~--~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 129 (676)
..+||||||.|+.|..- + ..++.|+ ||+|++..+ .. ..+|.+|+..+.+.|.+..
T Consensus 7 ~diGIDLGTanTlV~~k--~-kgIVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~------------ 65 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--G-KGIVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV------------ 65 (342)
T ss_pred ccceeeecccceEEEEc--C-ceEEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCce------------
Confidence 37999999999999764 2 2244443 999999763 22 3489999877666666520
Q ss_pred CHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCCHHHHHHHHHH
Q 005807 130 DAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG-KSVSEAVITVPAYFNDAQRQATKDA 208 (676)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~-~~~~~~VITVPa~~~~~qr~~l~~A 208 (676)
.+.+.. .-.+.--++...+|+|+.+.+...-+ ....+++++||..-++.+|+++++|
T Consensus 66 -------------aiRPmk---------dGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea 123 (342)
T COG1077 66 -------------AIRPMK---------DGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEA 123 (342)
T ss_pred -------------EEeecC---------CcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHH
Confidence 111111 12334456777888888887764333 4455799999999999999999999
Q ss_pred HHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 005807 209 GRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS 287 (676)
Q Consensus 209 a~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 287 (676)
++.||...+.++.||.|||+..++.-... .-+|||+||||+|++++.+.+-.. +....+||+.||+.+.+|+.+
T Consensus 124 ~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~-----~~Sirv~GD~~De~Ii~yvr~ 198 (342)
T COG1077 124 AESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS-----SSSVRVGGDKMDEAIIVYVRK 198 (342)
T ss_pred HHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE-----EeeEEEecchhhHHHHHHHHH
Confidence 99999999999999999999988775444 579999999999999998876543 445789999999999999999
Q ss_pred HhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCce----eeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 288 EFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQT----EINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
+|+-- .-...+|++|......-.. ...++.-..+.-....-.+.++-+++.+.+++.+++|.+
T Consensus 199 ~~nl~-------------IGe~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Ive 265 (342)
T COG1077 199 KYNLL-------------IGERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVE 265 (342)
T ss_pred HhCee-------------ecHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHH
Confidence 88622 1225689999987654221 111222111111124457899999999999999999999
Q ss_pred HHHHHHHHcCCC--cCCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 364 PCKNCLKDANIT--IKDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 364 ~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
.++..|+...-. .+-++ .++|+||+|.+..+.+.|++..+.++....+|..|||.|+......+
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 999999986432 22244 49999999999999999999999999999999999999998876654
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=250.41 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEE
Q 005807 162 SPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAV 241 (676)
Q Consensus 162 ~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV 241 (676)
.--+..+++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+.. ..+|
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----~~~v 112 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----NGAV 112 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----CcEE
Confidence 344688999999999999999999999999999999999999999999999999999999999999998754 3599
Q ss_pred EeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC
Q 005807 242 FDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSST 321 (676)
Q Consensus 242 ~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 321 (676)
+|+||||+|+++++.+...+ ..+..+||++||+.|.+.+. .+ ...||++|+.++.
T Consensus 113 vDiGggtt~i~i~~~G~i~~-----~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~~~- 167 (239)
T TIGR02529 113 VDVGGGTTGISILKKGKVIY-----SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGHKD- 167 (239)
T ss_pred EEeCCCcEEEEEEECCeEEE-----EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcCC-
Confidence 99999999999975432222 44678999999998876542 11 2678999986541
Q ss_pred CceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHH
Q 005807 322 SQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEI 401 (676)
Q Consensus 322 ~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~ 401 (676)
.+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|.+++.+++.
T Consensus 168 -------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 168 -------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 34567899999999999999999864 457999999999999999999999
Q ss_pred hCCCCCCCCCcchhHhhHHHH
Q 005807 402 FGKSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 402 fg~~~~~~~~p~~aVa~GAal 422 (676)
|+.++..+.||++++|.|||+
T Consensus 218 lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 LGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hCCCcccCCCCCeehhheeec
Confidence 999999999999999999986
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=240.84 Aligned_cols=202 Identities=26% Similarity=0.382 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEe
Q 005807 164 SQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD 243 (676)
Q Consensus 164 ~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D 243 (676)
.+.....|+++++.++.+++.++..++++||++|+..+++++.+|++.||+++..+++||.|++.+|... ..+|+|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~----~~~vvD 141 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID----NGAVVD 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----CcEEEE
Confidence 4566778899999999999988999999999999999999999999999999999999999999988653 259999
Q ss_pred eCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc
Q 005807 244 LGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ 323 (676)
Q Consensus 244 ~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~ 323 (676)
+||||||+++++ ++.+.. .++..+||.+||+.|.+++.-. ...||++|+.++
T Consensus 142 IGggtt~i~v~~--~g~~~~---~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~---- 193 (267)
T PRK15080 142 IGGGTTGISILK--DGKVVY---SADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK---- 193 (267)
T ss_pred eCCCcEEEEEEE--CCeEEE---EecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC----
Confidence 999999999964 443321 3467999999999998875311 257888887642
Q ss_pred eeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 324 TEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 324 ~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
+++++.++++|+++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.|+
T Consensus 194 ----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg 246 (267)
T PRK15080 194 ----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTG 246 (267)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhC
Confidence 246788999999999999999999863 56899999999999999999999999
Q ss_pred CCCCCCCCcchhHhhHHHHHh
Q 005807 404 KSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 404 ~~~~~~~~p~~aVa~GAal~a 424 (676)
.++..+.+|++++|.|||++|
T Consensus 247 ~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 247 LPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCcccCCCchHHHHHHHHhhC
Confidence 999899999999999999875
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=212.52 Aligned_cols=193 Identities=19% Similarity=0.326 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 005807 200 AQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFD 278 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D 278 (676)
...+.+.+|++.|||++..++.||.|+|++|...... ..++|+|+||||||++++.- +.... .....+||++||
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~GG~~it 232 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIGGNHIT 232 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEEC--CEEEE---EeeecchHHHHH
Confidence 4467788999999999999999999999998654333 38999999999999999863 33221 344689999999
Q ss_pred HHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC------CceeeeccccccCCCCCeeeEEEEcHHHHHH
Q 005807 279 NALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSST------SQTEINLPFITADASGAKHLNITLTRSKFET 352 (676)
Q Consensus 279 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~ 352 (676)
+.+.+.+. ....+||++|+.++.. ....+.++.+. .+....++|++|++
T Consensus 233 ~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~~ 287 (371)
T TIGR01174 233 KDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELAE 287 (371)
T ss_pred HHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHHH
Confidence 98876542 1246799999999864 23445555432 24568999999999
Q ss_pred HHhHHHHHHHHHHH-HHHHHcCCCcCCCcE-EEEEcCCcCcHHHHHHHHHHhCCCCCC------------CCCcchhHhh
Q 005807 353 LVNHLIERTKAPCK-NCLKDANITIKDVDE-VLLVGGMTRVPKVQEIVTEIFGKSPSK------------GVNPDEAVAL 418 (676)
Q Consensus 353 ~~~~~v~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~i~~~l~~~fg~~~~~------------~~~p~~aVa~ 418 (676)
++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. .-+|..++|.
T Consensus 288 ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~ 366 (371)
T TIGR01174 288 IIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAV 366 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHH
Confidence 99999999999997 999998876 56776 999999999999999999999865321 1278889999
Q ss_pred HHHHH
Q 005807 419 GAAIQ 423 (676)
Q Consensus 419 GAal~ 423 (676)
|.++|
T Consensus 367 Gl~~~ 371 (371)
T TIGR01174 367 GLLLY 371 (371)
T ss_pred HHHhC
Confidence 98864
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=214.97 Aligned_cols=195 Identities=16% Similarity=0.239 Sum_probs=148.3
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNA 280 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~ 280 (676)
.+.+.+|++.|||++..++.||.|+|.++......+ .++|+|+||||||++++. ++.+. ......+||+++++.
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~d 242 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTSD 242 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHHH
Confidence 344467999999999999999999999986654434 899999999999999986 44332 234478999999998
Q ss_pred HHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC------CceeeeccccccCCCCCeeeEEEEcHHHHHHHH
Q 005807 281 LLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSST------SQTEINLPFITADASGAKHLNITLTRSKFETLV 354 (676)
Q Consensus 281 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~ 354 (676)
|...+.- ....||++|+.+... ....+.++.+.. .....+++.+|.+++
T Consensus 243 Ia~~l~i-------------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~~l~~ii 297 (420)
T PRK09472 243 IAYAFGT-------------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQTLAEVI 297 (420)
T ss_pred HHHHhCc-------------------CHHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHHHHHHHH
Confidence 8765521 126799999775532 234455553321 123588999999999
Q ss_pred hHHHHHHHHHHHH-------HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC------------CCCcchh
Q 005807 355 NHLIERTKAPCKN-------CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK------------GVNPDEA 415 (676)
Q Consensus 355 ~~~v~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~------------~~~p~~a 415 (676)
.+.++++.+.+++ .+.+.++....++.|+|+||+|++|.|++.+++.|+.++.. ..+|..+
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHH
Confidence 9977777776654 45666777677899999999999999999999999865321 2489999
Q ss_pred HhhHHHHHhhh
Q 005807 416 VALGAAIQGGI 426 (676)
Q Consensus 416 Va~GAal~a~~ 426 (676)
++.|.++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999773
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-18 Score=181.84 Aligned_cols=196 Identities=27% Similarity=0.455 Sum_probs=161.0
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNA 280 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~ 280 (676)
-+.+.+|.+.+||++..++.+|.|+|.+...+...+ .++++|+||||||+++++ ++.+. ..+..++||++++..
T Consensus 167 ~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~--~G~l~---~~~~ipvgG~~vT~D 241 (418)
T COG0849 167 LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYK--NGALR---YTGVIPVGGDHVTKD 241 (418)
T ss_pred HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEE--CCEEE---EEeeEeeCccHHHHH
Confidence 567899999999999999999999999887665555 999999999999999975 44332 245578999999999
Q ss_pred HHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCC------ceeeeccccccCCCCCeeeEEEEcHHHHHHHH
Q 005807 281 LLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTS------QTEINLPFITADASGAKHLNITLTRSKFETLV 354 (676)
Q Consensus 281 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~ 354 (676)
|..-|...+ ..||++|+.+.... ...+.++....+ ....+++..+.+++
T Consensus 242 Ia~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~------~~~~~t~~~ls~II 296 (418)
T COG0849 242 IAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSD------IPRQVTRSELSEII 296 (418)
T ss_pred HHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCc------ccchhhHHHHHHHH
Confidence 998876555 57999999877653 333555544332 36789999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC--C----------CCCcchhHhhHHHH
Q 005807 355 NHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS--K----------GVNPDEAVALGAAI 422 (676)
Q Consensus 355 ~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~--~----------~~~p~~aVa~GAal 422 (676)
++.+.++..+++..|++.+.+..-...|+|+||++.+|.+.+..++.|+.++. . ..+|..+.+.|..+
T Consensus 297 ~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~ 376 (418)
T COG0849 297 EARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLL 376 (418)
T ss_pred HhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHH
Confidence 99999999999999999999766679999999999999999999999975421 1 24689999999999
Q ss_pred Hhhhc
Q 005807 423 QGGIL 427 (676)
Q Consensus 423 ~a~~l 427 (676)
++...
T Consensus 377 ~~~~~ 381 (418)
T COG0849 377 YGALM 381 (418)
T ss_pred HHhhc
Confidence 98853
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=172.16 Aligned_cols=309 Identities=16% Similarity=0.141 Sum_probs=192.4
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC---------CcEEEcHHHHHhhhhCCCchHHHhhhhhc
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPANTLFGTKRLIG 125 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~p~~~~~~~K~llg 125 (676)
.|.||+||+++++++..++.|.++. ||+++...+ ...++|..|...... ..+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~--------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~~~---------- 61 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVF--------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-GLE---------- 61 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEe--------eccceeecCcccccccCCCceEEchhhhhCCCC-ceE----------
Confidence 3789999999999998766555432 666665422 356788877542110 000
Q ss_pred CCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHH
Q 005807 126 RRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQAT 205 (676)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l 205 (676)
-.+|+ . +|..... +....+++++...... ....-..+++++|..++..+|+.+
T Consensus 62 ------------~~~P~-----~--------~G~i~d~-~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~ 114 (371)
T cd00012 62 ------------LIYPI-----E--------HGIVVDW-DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKT 114 (371)
T ss_pred ------------Ecccc-----c--------CCEEeCH-HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHH
Confidence 01111 1 1222222 3445666665543211 112245799999999998888888
Q ss_pred HH-HHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHH
Q 005807 206 KD-AGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEF 284 (676)
Q Consensus 206 ~~-Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~ 284 (676)
.+ +.+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+. +|.... ......++||.++|+.|.++
T Consensus 115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~i~pv~--~G~~~~-~~~~~~~~GG~~l~~~l~~~ 187 (371)
T cd00012 115 TEIMFETFNVPALYVAIQAVLSLYASGR----TTGLVVDSGDGVTHVVPVY--DGYVLP-HAIKRLDLAGRDLTRYLKEL 187 (371)
T ss_pred HHHhhccCCCCEEEEechHHHHHHhcCC----CeEEEEECCCCeeEEEEEE--CCEEch-hhheeccccHHHHHHHHHHH
Confidence 66 4677999999999999999999875 3679999999999998854 333211 12234689999999999999
Q ss_pred HHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCcee--------eeccccccCCCCCeeeEEEEcHHHH---HHH
Q 005807 285 LVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTE--------INLPFITADASGAKHLNITLTRSKF---ETL 353 (676)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~--------~~i~~~~~~~~g~~~~~~~itr~~f---e~~ 353 (676)
+...... .+. ..-...++.+|+.+....... ...........-+....+.++.+.| |-+
T Consensus 188 l~~~~~~---~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~l 257 (371)
T cd00012 188 LRERGYE---LNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEIL 257 (371)
T ss_pred HHhcCCC---ccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhc
Confidence 8654310 011 112345677777654321100 0000000000000122455665544 233
Q ss_pred HhHH-----HHHHHHHHHHHHHHcCCC--cCCCcEEEEEcCCcCcHHHHHHHHHHhCC----------CCCCCCCcchhH
Q 005807 354 VNHL-----IERTKAPCKNCLKDANIT--IKDVDEVLLVGGMTRVPKVQEIVTEIFGK----------SPSKGVNPDEAV 416 (676)
Q Consensus 354 ~~~~-----v~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~i~~~l~~~fg~----------~~~~~~~p~~aV 416 (676)
+.|. ...+.+.|.+++.....+ ..-++.|+|+||+|++|.+.++|++.+.. .+....+|..++
T Consensus 258 F~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~a 337 (371)
T cd00012 258 FNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSV 337 (371)
T ss_pred CChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccE
Confidence 4442 336778888888776432 23368899999999999999999998852 123456889999
Q ss_pred hhHHHHHhhh
Q 005807 417 ALGAAIQGGI 426 (676)
Q Consensus 417 a~GAal~a~~ 426 (676)
-.||+++|..
T Consensus 338 w~G~si~as~ 347 (371)
T cd00012 338 WLGGSILASL 347 (371)
T ss_pred EeCchhhcCc
Confidence 9999999875
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=164.61 Aligned_cols=298 Identities=17% Similarity=0.199 Sum_probs=186.7
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC--------cEEEcHHHHHhhhhCCCchHHHhhhhhc
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG--------ELLVGTPAKRQAVTNPANTLFGTKRLIG 125 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~--------~~~~G~~A~~~~~~~p~~~~~~~K~llg 125 (676)
..|.||+||.++++++..+..|.++. ||+|+...++ ..++|..|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVF--------PSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEc--------cceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 37999999999999998776676654 8888875433 245677663211 000
Q ss_pred CCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEeCCCCCHHHHH
Q 005807 126 RRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGK--SVSEAVITVPAYFNDAQRQ 203 (676)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~--~~~~~VITVPa~~~~~qr~ 203 (676)
.-.+|+ . +|. +.--+....+++++... .++. .-..++||.|...+..+|+
T Consensus 61 -----------~~~~P~-----~--------~G~-i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~ 112 (373)
T smart00268 61 -----------ELKYPI-----E--------HGI-VENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNRE 112 (373)
T ss_pred -----------eecCCC-----c--------CCE-EeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHH
Confidence 001121 1 122 22345556666666653 2332 2347899999999999999
Q ss_pred HHHHHH-HHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHH
Q 005807 204 ATKDAG-RIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282 (676)
Q Consensus 204 ~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~ 282 (676)
.+.+.+ +..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+. +|..- .......++||.++|+.|.
T Consensus 113 ~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~v~pv~--~G~~~-~~~~~~~~~GG~~l~~~l~ 185 (373)
T smart00268 113 KILEIMFETFNFPALYIAIQAVLSLYASGR----TTGLVIDSGDGVTHVVPVV--DGYVL-PHAIKRIDIAGRDLTDYLK 185 (373)
T ss_pred HHHHHhhccCCCCeEEEeccHHHHHHhCCC----CEEEEEecCCCcceEEEEE--CCEEc-hhhheeccCcHHHHHHHHH
Confidence 998876 57799999999999999999872 3779999999999999865 33321 1122336899999999999
Q ss_pred HHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc-------------------eeeeccccccCCCCCeeeEE
Q 005807 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ-------------------TEINLPFITADASGAKHLNI 343 (676)
Q Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-------------------~~~~i~~~~~~~~g~~~~~~ 343 (676)
+++...-. .... ..-...++.+|+.+..... ..+.+| +| . .+
T Consensus 186 ~~l~~~~~---~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lp------dg-~--~~ 246 (373)
T smart00268 186 ELLSERGY---QFNS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELP------DG-N--TI 246 (373)
T ss_pred HHHHhcCC---CCCc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECC------CC-C--EE
Confidence 98866210 0010 1122345666665432210 011111 11 1 23
Q ss_pred EEcHHHH---HHHHhHH-----HHHHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhCC--------C
Q 005807 344 TLTRSKF---ETLVNHL-----IERTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFGK--------S 405 (676)
Q Consensus 344 ~itr~~f---e~~~~~~-----v~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~ 405 (676)
.+..+.| |.++.|. ...+.+.|.+++..+..+. .-.+.|+|+||+|++|.+.++|.+.+.. .
T Consensus 247 ~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~ 326 (373)
T smart00268 247 KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVK 326 (373)
T ss_pred EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeE
Confidence 3333332 2333432 2366777777777654321 1246799999999999999999988821 1
Q ss_pred CCCCCCcchhHhhHHHHHhhh
Q 005807 406 PSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 406 ~~~~~~p~~aVa~GAal~a~~ 426 (676)
+..+.++..++=.||+++|..
T Consensus 327 v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 327 VIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred EecCCCCccceEeCcccccCc
Confidence 233456677777888887764
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-16 Score=145.33 Aligned_cols=197 Identities=24% Similarity=0.360 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCce
Q 005807 169 FVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGT 248 (676)
Q Consensus 169 ~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT 248 (676)
.+.+.+++.+++.+|..+++..-++|..-.+...+...+..+.||++++..++||+|||.-..++.. .|+|+||||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg----~VVDiGGGT 151 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG----GVVDIGGGT 151 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC----cEEEeCCCc
Confidence 3568889999999999999999999998877777788888999999999999999999987776655 799999999
Q ss_pred eEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeec
Q 005807 249 FDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINL 328 (676)
Q Consensus 249 ~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i 328 (676)
+-+|+++-.+-.| .-|..-||.++...|+-+ +++++ +++|..|+.-...
T Consensus 152 TGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~------- 200 (277)
T COG4820 152 TGISIVKKGKVIY-----SADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG------- 200 (277)
T ss_pred ceeEEEEcCcEEE-----eccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc-------
Confidence 9999987655444 445778888776555433 23322 4677777532111
Q ss_pred cccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC
Q 005807 329 PFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK 408 (676)
Q Consensus 329 ~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~ 408 (676)
++.-..+.|+++++.+.+.+.++..+ +..++|+||+|.-|.+.+..++.|+.++..
T Consensus 201 -------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~ 256 (277)
T COG4820 201 -------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVHL 256 (277)
T ss_pred -------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhcccccc
Confidence 11112468999999999998888744 688999999999999999999999999999
Q ss_pred CCCcchhHhhHHHHHh
Q 005807 409 GVNPDEAVALGAAIQG 424 (676)
Q Consensus 409 ~~~p~~aVa~GAal~a 424 (676)
+..|....-.|-|+-+
T Consensus 257 P~~p~y~TPLgIA~sg 272 (277)
T COG4820 257 PQHPLYMTPLGIASSG 272 (277)
T ss_pred CCCcceechhhhhhcc
Confidence 9999998888877643
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-12 Score=136.77 Aligned_cols=204 Identities=16% Similarity=0.227 Sum_probs=136.2
Q ss_pred EEEEeCCCCCHHHH-HHHHHHHHHc------C------CCeEEeeChhHHHHHhccccC---------CCCeEEEEeeCC
Q 005807 189 AVITVPAYFNDAQR-QATKDAGRIA------G------LDVQRIINEPTAAALSYGMNN---------KEGLIAVFDLGG 246 (676)
Q Consensus 189 ~VITVPa~~~~~qr-~~l~~Aa~~A------G------l~~~~li~Ep~AAal~y~~~~---------~~~~vlV~D~Gg 246 (676)
++...|..+-..++ +.+++..... | +..+.+++||.+|.+.+..+. ....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 34589988754443 5666554221 1 244678999999988776542 113789999999
Q ss_pred ceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceee
Q 005807 247 GTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEI 326 (676)
Q Consensus 247 GT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~ 326 (676)
||+|++++. ++.+. ...++....|..++.+.+.+++..+.. +..+. . ..++++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~~--~-------~~ie~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKEE---GASIT--P-------YMLEKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhCC---CCCCC--H-------HHHHHH---HHcC---cE
Confidence 999999975 44432 233444778999999999988864432 22221 1 112222 1111 11
Q ss_pred eccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCC
Q 005807 327 NLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSP 406 (676)
Q Consensus 327 ~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~ 406 (676)
.+. +.. .+.+ ++++.++++++++++...|...+.+ ..+++.|+|+||++++ +++.|++.|+. .
T Consensus 254 ~~~-------~~~--~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~ 316 (344)
T PRK13917 254 KLN-------QKT--VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-V 316 (344)
T ss_pred EeC-------CCc--eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-e
Confidence 110 001 1223 4567778899999998888887754 2578999999999987 88999999985 3
Q ss_pred CCCCCcchhHhhHHHHHhhhccCC
Q 005807 407 SKGVNPDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 407 ~~~~~p~~aVa~GAal~a~~l~~~ 430 (676)
....||..|.|+|...+|..+.+.
T Consensus 317 ~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 317 EKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred EEcCChHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999876553
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-12 Score=141.95 Aligned_cols=289 Identities=15% Similarity=0.139 Sum_probs=173.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC------------cEEEcHHHHHhhhhCCCchHHHh
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG------------ELLVGTPAKRQAVTNPANTLFGT 120 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~------------~~~~G~~A~~~~~~~p~~~~~~~ 120 (676)
...|.||+||.++++++..+..|.++- ||+|+...++ +.++|++|.... ..
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----~~----- 66 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYII--------PTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS----KS----- 66 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEe--------cceeEEeccccccccccccccCCEEEcchhhhCc----CC-----
Confidence 347999999999999998766777553 7777663221 234555543210 00
Q ss_pred hhhhcCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEeCCCCC
Q 005807 121 KRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG--KSVSEAVITVPAYFN 198 (676)
Q Consensus 121 K~llg~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~--~~~~~~VITVPa~~~ 198 (676)
+ .-.+|+ .+|...+. +....++.++... .+. ..-..+++|.|..++
T Consensus 67 ---~------------~l~~Pi-------------~~G~I~dw-d~~e~l~~~~~~~---~L~~~p~~~~vllte~~~~~ 114 (414)
T PTZ00280 67 ---Y------------TLTYPM-------------KHGIVEDW-DLMEKFWEQCIFK---YLRCEPEEHYFILTEPPMNP 114 (414)
T ss_pred ---c------------EEecCc-------------cCCEeCCH-HHHHHHHHHHHHH---hhccCCCCCceEEeeCCCCc
Confidence 0 001111 12233333 4555566664432 222 122358999999999
Q ss_pred HHHHHHHHHHH-HHcCCCeEEeeChhHHHHHhccccCC-----C-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCC
Q 005807 199 DAQRQATKDAG-RIAGLDVQRIINEPTAAALSYGMNNK-----E-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTF 271 (676)
Q Consensus 199 ~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~-----~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~ 271 (676)
..+|+.+.+.+ +..+++.+.+..+|.+|++++..... + .+-+|||+|.|+++++.+. +|..-..+ ....+
T Consensus 115 ~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G~~l~~~-~~~~~ 191 (414)
T PTZ00280 115 PENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DGYVIGSS-IKHIP 191 (414)
T ss_pred HHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CCEEcccc-eEEec
Confidence 99999987765 55599999999999999998733211 1 2669999999999998754 33221111 12358
Q ss_pred cchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCce-------------eeeccccccCCCCC
Q 005807 272 LGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQT-------------EINLPFITADASGA 338 (676)
Q Consensus 272 lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-------------~~~i~~~~~~~~g~ 338 (676)
+||.++++.|.++|.++.. .+... .....++.+|+.++..... .....+...+..+.
T Consensus 192 ~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g 261 (414)
T PTZ00280 192 LAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTK 261 (414)
T ss_pred CcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCC
Confidence 9999999999998865321 11110 1123466777766532110 00000100111111
Q ss_pred eeeEEEEcHHHHH---HHHhHHH------HHHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 339 KHLNITLTRSKFE---TLVNHLI------ERTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 339 ~~~~~~itr~~fe---~~~~~~v------~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
....+.+..+.|. -++.|-+ ..+.+.|.+.+.++..+. .-.+.|+|+||+|.+|.+.++|++.+.
T Consensus 262 ~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 262 KPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 2345677776663 3455532 145677777777765332 225789999999999999999998885
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-12 Score=134.91 Aligned_cols=304 Identities=17% Similarity=0.179 Sum_probs=183.2
Q ss_pred CCCCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC---------cEEEcHHHHHhhhhCCCchHHHh
Q 005807 50 PAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG---------ELLVGTPAKRQAVTNPANTLFGT 120 (676)
Q Consensus 50 ~~~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~ 120 (676)
+.+...|-||+|+.++++++..+..|.++- ||+|....+. +.++|.+|.... . ...+
T Consensus 2 ~~~~~~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~-----~-~~~l 67 (375)
T PTZ00452 2 QAQYPAVVIDNGSGYCKIGIAGDDAPTSCF--------PAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR-----G-VLAI 67 (375)
T ss_pred CCCCCEEEEECCCCeEEEeeCCCCCcCEEe--------cceeEEECCccccccccccceEEChhhhccc-----c-CcEE
Confidence 345568999999999999998777777543 6666653221 234555543200 0 0000
Q ss_pred hhhhcCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHH
Q 005807 121 KRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDA 200 (676)
Q Consensus 121 K~llg~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~ 200 (676)
+ .|+ .+|...+. +.+..++.|+..... .....-..+++|-|..++..
T Consensus 68 ~------------------~Pi-------------~~G~I~dw-d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~ 114 (375)
T PTZ00452 68 K------------------EPI-------------QNGIINSW-DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKF 114 (375)
T ss_pred c------------------ccC-------------cCCEEcCH-HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHH
Confidence 0 011 12223333 333445555532211 12222356899999999999
Q ss_pred HHHHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 005807 201 QRQATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDN 279 (676)
Q Consensus 201 qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~ 279 (676)
+|+.+.+. .+..+.+.+.+.+.|.+++++++.. +-+|+|+|.+.+.++-+. +|..-..+. ...++||.++++
T Consensus 115 ~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~----tglVVDiG~~~t~v~PV~--dG~~l~~~~-~r~~~gG~~lt~ 187 (375)
T PTZ00452 115 NRERMTQIMFETFNTPCLYISNEAVLSLYTSGKT----IGLVVDSGEGVTHCVPVF--EGHQIPQAI-TKINLAGRLCTD 187 (375)
T ss_pred HHHHHHHHHhhccCCceEEEechHHHHHHHCCCc----eeeeecCCCCcceEEEEE--CCEEeccce-EEeeccchHHHH
Confidence 99998776 4667889999999999999987643 559999999999998753 332222222 225799999999
Q ss_pred HHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc----------------eeeeccccccCCCCCeeeEE
Q 005807 280 ALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ----------------TEINLPFITADASGAKHLNI 343 (676)
Q Consensus 280 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----------------~~~~i~~~~~~~~g~~~~~~ 343 (676)
.|.+.|... +..+.... . ...++.+|+.++.... ....+| ..-.+
T Consensus 188 ~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP---------Dg~~i 248 (375)
T PTZ00452 188 YLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP---------DGNIL 248 (375)
T ss_pred HHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC---------CCCEE
Confidence 998887542 11111110 0 1234556665543211 011111 11245
Q ss_pred EEcHHHH---HHHHhHHH-----HHHHHHHHHHHHHcCCC--cCCCcEEEEEcCCcCcHHHHHHHHHHhCC--------C
Q 005807 344 TLTRSKF---ETLVNHLI-----ERTKAPCKNCLKDANIT--IKDVDEVLLVGGMTRVPKVQEIVTEIFGK--------S 405 (676)
Q Consensus 344 ~itr~~f---e~~~~~~v-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~ 405 (676)
.+..+.| |-+++|-+ ..+.+.|.+++..+..+ ..-.+.|+|+||+|.+|.+.++|++.+.. +
T Consensus 249 ~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~ 328 (375)
T PTZ00452 249 TIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQ 328 (375)
T ss_pred EeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeE
Confidence 6666665 34445533 24667777777776433 22357999999999999999999887731 1
Q ss_pred CCCCCCcchhHhhHHHHHhhh
Q 005807 406 PSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 406 ~~~~~~p~~aVa~GAal~a~~ 426 (676)
+..+.++..++=.|++++|..
T Consensus 329 v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 329 VAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred EecCCCcceeEEECchhhcCc
Confidence 223445666777888888764
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=139.99 Aligned_cols=312 Identities=19% Similarity=0.231 Sum_probs=180.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC----cEEEcHHHHHhhhhCCCchHHHhhhhhcCCC
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG----ELLVGTPAKRQAVTNPANTLFGTKRLIGRRF 128 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~----~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~ 128 (676)
..+|-||+|+.++++++..+..|.++ +||++....+. ..++|..+... .+.. .+.
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~---~~~------- 62 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSNL---ELR------- 62 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTGE---EEE-------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhhe---eee-------
Confidence 45899999999999999766666644 37887764433 35677764321 0000 000
Q ss_pred CCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 005807 129 NDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDA 208 (676)
Q Consensus 129 ~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~A 208 (676)
.|+ .++..... +....+++++..... .....-..++++.|..++...|+.+.+.
T Consensus 63 -----------~p~-------------~~g~i~~~-~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 63 -----------SPI-------------ENGVIVDW-DALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp -----------ESE-------------ETTEESSH-HHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred -----------eec-------------cccccccc-ccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhh
Confidence 011 12222333 344555555554321 1122334799999999999999887666
Q ss_pred -HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 005807 209 -GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS 287 (676)
Q Consensus 209 -a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 287 (676)
.+..|++.+.++++|.+|+++++.. +-+|||+|.+.+.++.+ -+|.. +........+||.++++.|.++|..
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~----tglVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~lt~~l~~lL~~ 189 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT----TGLVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDLTEYLKELLKE 189 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS----SEEEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHHHHHHHHHHHH
T ss_pred hhcccccceeeeeecccccccccccc----cccccccceeeeeeeee--eeccc-cccccccccccHHHHHHHHHHHHHh
Confidence 4677999999999999999988765 45999999999988875 34332 1111223579999999999999887
Q ss_pred H-hhhh--ccCCCc----cCHHHHHHHHHHHHHHHHHcCCC---------------CceeeeccccccCCCCCeeeEEEE
Q 005807 288 E-FKRT--ERIDLS----QDKLALQRLRESAEKAKIELSST---------------SQTEINLPFITADASGAKHLNITL 345 (676)
Q Consensus 288 ~-~~~~--~~~~~~----~~~~~~~~L~~~~e~~K~~Ls~~---------------~~~~~~i~~~~~~~~g~~~~~~~i 345 (676)
+ +.-. +..... ........-...++.+|+.+... ....+.+|. + ..+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPd------g---~~i~~ 260 (393)
T PF00022_consen 190 RNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPD------G---QTIIL 260 (393)
T ss_dssp T-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TT------S---SEEEE
T ss_pred hccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccccc------c---ccccc
Confidence 4 1100 000000 00000111122344444443211 122222221 1 24556
Q ss_pred cHHHH---HHHHhHHH------------HHHHHHHHHHHHHcCCCcCC--CcEEEEEcCCcCcHHHHHHHHHHhCC----
Q 005807 346 TRSKF---ETLVNHLI------------ERTKAPCKNCLKDANITIKD--VDEVLLVGGMTRVPKVQEIVTEIFGK---- 404 (676)
Q Consensus 346 tr~~f---e~~~~~~v------------~~i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~i~~~l~~~fg~---- 404 (676)
..+.| |-++.|.. ..+.+.|.+++..+..+... .+.|+|+||+|++|.+.++|...+..
T Consensus 261 ~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~ 340 (393)
T PF00022_consen 261 GKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPS 340 (393)
T ss_dssp STHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhc
Confidence 65554 22333322 15777888888876543211 47999999999999999999887732
Q ss_pred ----CCCCCC-CcchhHhhHHHHHhhhc
Q 005807 405 ----SPSKGV-NPDEAVALGAAIQGGIL 427 (676)
Q Consensus 405 ----~~~~~~-~p~~aVa~GAal~a~~l 427 (676)
++..+. +|..++=.||+++|..-
T Consensus 341 ~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 341 STKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp TSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred cccceeccCchhhhhcccccceeeeccc
Confidence 123344 89999999999998853
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-11 Score=129.15 Aligned_cols=298 Identities=16% Similarity=0.154 Sum_probs=181.1
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC---------CcEEEcHHHHHhhhhCCCchHHHhhhhh
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPANTLFGTKRLI 124 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~p~~~~~~~K~ll 124 (676)
..|-||+|+.++++++..+..|.++ +||++....+ ...++|..+... ... ..+
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~-~~l---- 68 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-----RGI-LTL---- 68 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhcc-----ccc-ceE----
Confidence 4699999999999999877666644 3677665322 124455554321 000 000
Q ss_pred cCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEeCCCCCHHHH
Q 005807 125 GRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG--KSVSEAVITVPAYFNDAQR 202 (676)
Q Consensus 125 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~--~~~~~~VITVPa~~~~~qr 202 (676)
..|+ . +|...+. +....++.++.. ..++ .....+++|-|..++..+|
T Consensus 69 --------------~~Pi-----~--------~G~i~d~-d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r 117 (378)
T PTZ00004 69 --------------KYPI-----E--------HGIVTNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 117 (378)
T ss_pred --------------cccC-----c--------CCEEcCH-HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHH
Confidence 0111 1 2233333 444556665432 2232 2234678999999999999
Q ss_pred HHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 203 QATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 203 ~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
+.+.+. .+..|++.+.++.+|.+|+++++. .+-+|+|+|.+.++++.+. +|..-..+ ....++||.++++.|
T Consensus 118 ~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----~tglVVDiG~~~t~v~pV~--dG~~l~~~-~~~~~~GG~~lt~~L 190 (378)
T PTZ00004 118 EKMTQIMFETHNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPIY--EGYSLPHA-IHRLDVAGRDLTEYM 190 (378)
T ss_pred HHHHHHHHhhcCCceEEeeccHHHHHHhcCC----ceEEEEECCCCcEEEEEEE--CCEEeecc-eeeecccHHHHHHHH
Confidence 877665 567899999999999999998764 2569999999999998753 33322222 223579999999999
Q ss_pred HHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCC-----------------ceeeeccccccCCCCCeeeEEE
Q 005807 282 LEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTS-----------------QTEINLPFITADASGAKHLNIT 344 (676)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~~~i~~~~~~~~g~~~~~~~ 344 (676)
.+.|...- ..+... .-...++.+|+.+.... ...+.+| ..-.+.
T Consensus 191 ~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP---------dg~~i~ 251 (378)
T PTZ00004 191 MKILHERG-----TTFTTT-----AEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP---------DGTIIT 251 (378)
T ss_pred HHHHHhcC-----CCCCcH-----HHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC---------CCCEEE
Confidence 99875431 111111 01123455665543221 0111111 112345
Q ss_pred EcHHHH---HHHHhHH------HHHHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhCC--------C
Q 005807 345 LTRSKF---ETLVNHL------IERTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFGK--------S 405 (676)
Q Consensus 345 itr~~f---e~~~~~~------v~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~ 405 (676)
+..+.| |-+|+|- ...+.+.|.+++.++..+. .-...|+|+||+|.+|.+.++|+..+.. +
T Consensus 252 l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~ 331 (378)
T PTZ00004 252 VGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIK 331 (378)
T ss_pred EcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEE
Confidence 565554 3455553 2356677778777765332 2257899999999999999999888731 1
Q ss_pred CCCCCCcchhHhhHHHHHhhh
Q 005807 406 PSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 406 ~~~~~~p~~aVa~GAal~a~~ 426 (676)
+..+.++..++=.||+++|..
T Consensus 332 v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 332 VVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred EecCCCCceeEEECcccccCc
Confidence 223456777777888887763
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=129.65 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=180.3
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC---------cEEEcHHHHHhhhhCCCchHHHhhhhh
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG---------ELLVGTPAKRQAVTNPANTLFGTKRLI 124 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~K~ll 124 (676)
..|-||+|+.++++++..+..|..+ +||+|....++ ..++|+.|.... +. ..+
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~~---~~l---- 68 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---GI---LTL---- 68 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhccc---cC---cEE----
Confidence 3689999999999999877777644 36666542221 234555443200 00 000
Q ss_pred cCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEeCCCCCHHHH
Q 005807 125 GRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGK--SVSEAVITVPAYFNDAQR 202 (676)
Q Consensus 125 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~--~~~~~VITVPa~~~~~qr 202 (676)
..|+ .+|...+. +....++.++.. +.+.. .-..+++|-|..++..+|
T Consensus 69 --------------~~Pi-------------~~G~i~dw-d~~e~l~~~~f~---~~l~v~p~~~pvllte~~~~~~~~r 117 (376)
T PTZ00281 69 --------------KYPI-------------EHGIVTNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 117 (376)
T ss_pred --------------eccC-------------cCCEEcCH-HHHHHHHHHHHH---hhccCCCccCeEEEecCCCCcHHHH
Confidence 0111 12333333 334455555443 22322 234688899999999999
Q ss_pred HHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 203 QATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 203 ~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
+.+.+. .+..+++.+.+...|.+++++++.. +-+|||+|.+.+.++-+.- |.. +.......++||.++++.|
T Consensus 118 e~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~----tglVVDiG~~~t~v~PV~d--G~~-~~~~~~~~~~GG~~lt~~L 190 (376)
T PTZ00281 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT----TGIVMDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDYM 190 (376)
T ss_pred HHHHHHHhcccCCceeEeeccHHHHHHhcCCc----eEEEEECCCceEEEEEEEe--ccc-chhheeeccCcHHHHHHHH
Confidence 998774 6778999999999999999987642 5699999999999875432 211 1112223579999999999
Q ss_pred HHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc------------eeeeccccccCCCCCeeeEEEEcHHH
Q 005807 282 LEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ------------TEINLPFITADASGAKHLNITLTRSK 349 (676)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------------~~~~i~~~~~~~~g~~~~~~~itr~~ 349 (676)
.+.|...- ..+... .-...++.+|+.++.... ......+... ..-.+.+..+.
T Consensus 191 ~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LP-----dg~~i~i~~er 255 (376)
T PTZ00281 191 MKILTERG-----YSFTTT-----AEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP-----DGQVITIGNER 255 (376)
T ss_pred HHHHHhcC-----CCCCcH-----HHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECC-----CCCEEEeeHHH
Confidence 98875431 111110 012345667776543210 0000011111 11235555554
Q ss_pred H---HHHHhHHH-----HHHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhCC--------CCCCCCC
Q 005807 350 F---ETLVNHLI-----ERTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFGK--------SPSKGVN 411 (676)
Q Consensus 350 f---e~~~~~~v-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~~~~~~~ 411 (676)
| |-+++|-+ ..+.+.|.+++..+..+. .-.+.|+|+||+|.+|.+.++|+..+.. ++..+.+
T Consensus 256 ~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~ 335 (376)
T PTZ00281 256 FRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE 335 (376)
T ss_pred eeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCC
Confidence 4 44555532 245667777777654321 2247899999999999999999888731 1233456
Q ss_pred cchhHhhHHHHHhhh
Q 005807 412 PDEAVALGAAIQGGI 426 (676)
Q Consensus 412 p~~aVa~GAal~a~~ 426 (676)
+..++=.|++++|..
T Consensus 336 r~~~aW~Ggsilasl 350 (376)
T PTZ00281 336 RKYSVWIGGSILASL 350 (376)
T ss_pred CceeEEECcccccCc
Confidence 777888899888874
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=124.99 Aligned_cols=178 Identities=16% Similarity=0.187 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhcc-----ccC--CCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCC
Q 005807 198 NDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG-----MNN--KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGD 269 (676)
Q Consensus 198 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~-----~~~--~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~ 269 (676)
.....+.+.++++.||++...+..+|.|.+-.+. ... ... .++++|+|+++++++++.-+...+ ...
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEE
Confidence 3456788899999999999999999999876663 111 123 499999999999999975333232 345
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHH
Q 005807 270 TFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSK 349 (676)
Q Consensus 270 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~ 349 (676)
..+||.++++.+.+.+. .+ ...||+.|....... ..
T Consensus 216 i~~G~~~i~~~i~~~~~--------~~-----------~~~Ae~~k~~~~~~~-----------------~~-------- 251 (348)
T TIGR01175 216 VPFGTRQLTSELSRAYG--------LN-----------PEEAGEAKQQGGLPL-----------------LY-------- 251 (348)
T ss_pred eechHHHHHHHHHHHcC--------CC-----------HHHHHHHHhcCCCCC-----------------ch--------
Confidence 77999999988875432 11 256788876432110 00
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHc--CCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC-------------------
Q 005807 350 FETLVNHLIERTKAPCKNCLKDA--NITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK------------------- 408 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~------------------- 408 (676)
-.+++++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.|+.++..
T Consensus 252 ~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~ 331 (348)
T TIGR01175 252 DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLA 331 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHH
Confidence 02345666666666667766532 222345899999999999999999999999854321
Q ss_pred CCCcchhHhhHHHHHh
Q 005807 409 GVNPDEAVALGAAIQG 424 (676)
Q Consensus 409 ~~~p~~aVa~GAal~a 424 (676)
..+|..++|.|+|+++
T Consensus 332 ~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 332 VDAPALMTALGLALRG 347 (348)
T ss_pred hhhHHHHHHhhHhhcC
Confidence 1345678888888765
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-10 Score=123.88 Aligned_cols=299 Identities=16% Similarity=0.142 Sum_probs=180.2
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC---------CcEEEcHHHHHhhhhCCCchHHHhhhhh
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPANTLFGTKRLI 124 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~p~~~~~~~K~ll 124 (676)
..|-||+|+.++++++..+..|.++ +||+|..... +..++|.+|.... . .+
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~-----~-------~~ 72 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR-----G-------LL 72 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC-----c-------Cc
Confidence 3688999999999999877677654 2666655321 2334555543210 0 00
Q ss_pred cCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHH
Q 005807 125 GRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQA 204 (676)
Q Consensus 125 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~ 204 (676)
. -.+|+ . +|. +.--+....++.++.+... ....-..+++|-|..++..+|+.
T Consensus 73 ~------------l~~Pi-----~--------~G~-v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~ 124 (380)
T PTZ00466 73 K------------VTYPI-----N--------HGI-IENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEK 124 (380)
T ss_pred e------------eCccc-----c--------CCe-ECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHH
Confidence 0 00111 1 122 2233444555555543211 12223468899999999999999
Q ss_pred HHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHH
Q 005807 205 TKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLE 283 (676)
Q Consensus 205 l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~ 283 (676)
+.+. .+..+++.+.+.++|.+|+++++.. +-+|+|+|.+.+.++-+. +|..-. ......++||.++++.|.+
T Consensus 125 ~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~----tglVVD~G~~~t~v~PV~--~G~~~~-~~~~~~~~GG~~lt~~L~~ 197 (380)
T PTZ00466 125 IAEVFFETFNVPALFISIQAILSLYSCGKT----NGTVLDCGDGVCHCVSIY--EGYSIT-NTITRTDVAGRDITTYLGY 197 (380)
T ss_pred HHHHHhccCCCCeEEEecchHHHHHhcCCc----eEEEEeCCCCceEEEEEE--CCEEee-cceeEecCchhHHHHHHHH
Confidence 7655 5667899999999999999987643 669999999999987643 332211 1222358999999999998
Q ss_pred HHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc---------------eeeeccccccCCCCCeeeEEEEcHH
Q 005807 284 FLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ---------------TEINLPFITADASGAKHLNITLTRS 348 (676)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------------~~~~i~~~~~~~~g~~~~~~~itr~ 348 (676)
.+.+. +..... ..-+..++.+|+.+..... ..+.+| ....+.+..+
T Consensus 198 lL~~~-----~~~~~~-----~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LP---------dg~~i~l~~e 258 (380)
T PTZ00466 198 LLRKN-----GHLFNT-----SAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILP---------DGSQILIGSE 258 (380)
T ss_pred HHHhc-----CCCCCc-----HHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECC---------CCcEEEEchH
Confidence 87542 111110 0112345566665432110 111111 1124556666
Q ss_pred HH---HHHHhHHH-----HHHHHHHHHHHHHcCCC--cCCCcEEEEEcCCcCcHHHHHHHHHHhCC--------CCCCCC
Q 005807 349 KF---ETLVNHLI-----ERTKAPCKNCLKDANIT--IKDVDEVLLVGGMTRVPKVQEIVTEIFGK--------SPSKGV 410 (676)
Q Consensus 349 ~f---e~~~~~~v-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~~~~~~ 410 (676)
.| |-+|+|-+ ..+.+.|.+.+.++..+ ..-...|+|+||+|.+|.+.++|+..+.. .+..+.
T Consensus 259 r~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~ 338 (380)
T PTZ00466 259 RYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPP 338 (380)
T ss_pred HhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCC
Confidence 65 44455432 24566777777765433 22258999999999999999999988731 123345
Q ss_pred CcchhHhhHHHHHhhh
Q 005807 411 NPDEAVALGAAIQGGI 426 (676)
Q Consensus 411 ~p~~aVa~GAal~a~~ 426 (676)
++..++=.|++++|..
T Consensus 339 ~r~~~aW~GgSilasl 354 (380)
T PTZ00466 339 ERKFSTFIGGSILASL 354 (380)
T ss_pred CCceeEEECchhhcCc
Confidence 6667777888888763
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-10 Score=118.92 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=127.7
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHc---------CCCeEEeeChhHHHHHhccccC-----CCCeEEEEeeCCceeE
Q 005807 185 SVSEAVITVPAYFNDAQRQATKDAGRIA---------GLDVQRIINEPTAAALSYGMNN-----KEGLIAVFDLGGGTFD 250 (676)
Q Consensus 185 ~~~~~VITVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~AAal~y~~~~-----~~~~vlV~D~GgGT~D 250 (676)
.+..+|+..|..+...+++.+++..... -+..+.+++||.+|.+.+..+. ..+.++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999888999998876532 2355789999999988775432 2238999999999999
Q ss_pred EEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccc
Q 005807 251 VSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPF 330 (676)
Q Consensus 251 vsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~ 330 (676)
+.++ .++.+ +...++....|..++-+.+.+.+.+++. .....+.. .+..+.+.-| ...+
T Consensus 181 ~~~~--~~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~---~i~~~l~~g~-------~~~~---- 239 (320)
T TIGR03739 181 WLVA--RGMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDID---RIDLALRTGK-------QPRI---- 239 (320)
T ss_pred eehc--cCCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHH---HHHHHHHhCC-------ceee----
Confidence 9876 34444 3344555778988888888888877664 22101111 1111111111 0000
Q ss_pred cccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC-CCCC
Q 005807 331 ITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS-PSKG 409 (676)
Q Consensus 331 ~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~-~~~~ 409 (676)
. + . .+.|+ +.-+.....++++...+...+. ...+++.|+|+||++. .+++.|++.|+.. +...
T Consensus 240 -~----g-k--~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~ 303 (320)
T TIGR03739 240 -Y----Q-K--PVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV 303 (320)
T ss_pred -c----c-e--ecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec
Confidence 0 0 1 11222 1112333344444433333331 1245899999999986 6789999999863 3457
Q ss_pred CCcchhHhhHHHHHh
Q 005807 410 VNPDEAVALGAAIQG 424 (676)
Q Consensus 410 ~~p~~aVa~GAal~a 424 (676)
.||..|.|+|-..+|
T Consensus 304 ~dp~~ANarG~~~~g 318 (320)
T TIGR03739 304 DEPMFANVRGFQIAG 318 (320)
T ss_pred CCcHHHHHHHHHHhh
Confidence 899999999987765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-11 Score=125.72 Aligned_cols=176 Identities=23% Similarity=0.277 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHcCCCeEEeeChhHHHHHhcccc----C-C--CCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCc
Q 005807 200 AQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN----N-K--EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFL 272 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~----~-~--~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~l 272 (676)
..-+...++++.|||+...+--+|.|.+-.+... . . .+.++++|+|+.++.+.++. ++.+.. .....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEee
Confidence 4566778899999999988877888876555442 1 1 13799999999999999955 444322 334689
Q ss_pred chHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHH
Q 005807 273 GGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFET 352 (676)
Q Consensus 273 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~ 352 (676)
||.++++.+.+.+.-.+ ..+|+.|..-+... +...+
T Consensus 211 G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l~~-------------------------~~~~~ 246 (340)
T PF11104_consen 211 GGNDLTEAIARELGIDF-------------------EEAEELKRSGGLPE-------------------------EYDQD 246 (340)
T ss_dssp SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT-------------------------------HHH
T ss_pred CHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCCCc-------------------------chHHH
Confidence 99999999988754333 45666666421000 22334
Q ss_pred HHhHHHHHHHHHHHHHHHH--cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC---------CCC----------C
Q 005807 353 LVNHLIERTKAPCKNCLKD--ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS---------KGV----------N 411 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~---------~~~----------~ 411 (676)
.+.+.++++...|++.++- .......|+.|+|+||+++++.|.+.|++.|+.++. .+. .
T Consensus 247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~ 326 (340)
T PF11104_consen 247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDA 326 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhh
Confidence 5566666666666666652 222346799999999999999999999999986432 111 3
Q ss_pred cchhHhhHHHHHh
Q 005807 412 PDEAVALGAAIQG 424 (676)
Q Consensus 412 p~~aVa~GAal~a 424 (676)
|..++|.|.|+++
T Consensus 327 ~~~avA~GLAlR~ 339 (340)
T PF11104_consen 327 PQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcC
Confidence 6779999999874
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.4e-10 Score=115.36 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=97.2
Q ss_pred CeEEeeChhHHHHHhccccCCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhc
Q 005807 215 DVQRIINEPTAAALSYGMNNKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293 (676)
Q Consensus 215 ~~~~li~Ep~AAal~y~~~~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 293 (676)
..+.+++||.||.+.+...-.+ +.++|+|+||+|+|++++. ++.-.+....+...+|-..+-..+.+.+.....
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~~~--- 215 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSAGI--- 215 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT--SB---
T ss_pred eeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHhcC---
Confidence 4578999999999987655333 4899999999999999875 332223334455678998888888877665211
Q ss_pred cCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q 005807 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDAN 373 (676)
Q Consensus 294 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~ 373 (676)
.. +. ..++++-... .....+. ..+ .+ . -..+++.+.++..++++.+.|.+.+.+
T Consensus 216 --~~--s~-------~~~~~ii~~~--~~~~~~~-~~i-~~----~-----~~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 216 --DT--SE-------LQIDDIIRNR--KDKGYLR-QVI-ND----E-----DVIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp --HH--HH-------HHHHHHHHTT--T-HHHHH-HHS-SS----H-----HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred --CC--cH-------HHHHHHHHhh--hccceec-ccc-cc----h-----hhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 00 00 0111110000 0000000 000 00 0 012344455555555555555554432
Q ss_pred CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC---CCCCCCCcchhHhhHHH
Q 005807 374 ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK---SPSKGVNPDEAVALGAA 421 (676)
Q Consensus 374 ~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~---~~~~~~~p~~aVa~GAa 421 (676)
..+++.|+||||++ ..+.+.|++.|+. .+...-||+.|-|+|-+
T Consensus 270 --~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 24678999999996 6788999999973 46678899999999964
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.6e-09 Score=105.72 Aligned_cols=169 Identities=16% Similarity=0.199 Sum_probs=104.8
Q ss_pred eeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCc
Q 005807 219 IINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLS 298 (676)
Q Consensus 219 li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~ 298 (676)
.++|-+|-+.+.....+... .|+|+||..+-+..++ ++...-.........|+-.|.+.+.+.+.-.+
T Consensus 74 ~~~ei~~~~~g~~~~~~~~~-~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~~--------- 141 (248)
T TIGR00241 74 IVTEISCHGKGANYLAPEAR-GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVSV--------- 141 (248)
T ss_pred ceEEhhHHHHHHHHHCCCCC-EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCCH---------
Confidence 57788777654433322212 5999999988888876 55443333455566788888887776653222
Q ss_pred cCHHHHHHHHHHHHHHHHHcCC----CCceeeeccc-cccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcC
Q 005807 299 QDKLALQRLRESAEKAKIELSS----TSQTEINLPF-ITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDAN 373 (676)
Q Consensus 299 ~~~~~~~~L~~~~e~~K~~Ls~----~~~~~~~i~~-~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~ 373 (676)
++++..+..-.. +....+..+. +.. .+..-.+ .++++..+++.+...+.+.+....
T Consensus 142 ----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~------~l~~g~~---~~di~~~~~~~va~~i~~~~~~~~ 202 (248)
T TIGR00241 142 ----------EELGSLAEKADRKAKISSMCTVFAESELIS------LLAAGVK---KEDILAGVYESIAERVAEMLQRLK 202 (248)
T ss_pred ----------HHHHHHHhcCCCCCCcCCEeEEEechhHHH------HHHCCCC---HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 223333322110 0111111100 000 0000112 245667777777777776665443
Q ss_pred CCcCCCc-EEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 374 ITIKDVD-EVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 374 ~~~~~i~-~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
++ .|+|+||.+++|++.+.+++.++.++..+.+|..+.|+|||++
T Consensus 203 -----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 -----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred -----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 34 7999999999999999999999999999999999999999973
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-08 Score=96.47 Aligned_cols=153 Identities=18% Similarity=0.269 Sum_probs=105.4
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhcccc-----CCCC--eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcch
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMN-----NKEG--LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGG 274 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~-----~~~~--~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG 274 (676)
-+...+|.+.|||....+--|.-|.--+|... .... .++|+|+|+..+.+.++.-+...| .....+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccCcH
Confidence 45567899999999888888888887666522 1122 579999999999999976555444 44578999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHH
Q 005807 275 EDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLV 354 (676)
Q Consensus 275 ~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~ 354 (676)
+++..++.+.+.-.+ ..++.+|....... ++ -.++.
T Consensus 226 ~Qlt~~i~r~~~L~~-------------------~~a~~~k~~~~~P~-----------------~y--------~~~vl 261 (354)
T COG4972 226 DQLTQEIQRAYSLTE-------------------EKAEEIKRGGTLPT-----------------DY--------GSEVL 261 (354)
T ss_pred HHHHHHHHHHhCCCh-------------------hHhHHHHhCCCCCC-----------------ch--------hHHHH
Confidence 999988776542221 34666666433221 11 12334
Q ss_pred hHHHHHHHHHHHHH----HHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC
Q 005807 355 NHLIERTKAPCKNC----LKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS 405 (676)
Q Consensus 355 ~~~v~~i~~~i~~~----l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~ 405 (676)
.+++..+.+.|.+. +...+ ..+|+.|+|.||++.+-.+.+.+.+.++.+
T Consensus 262 ~~f~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 262 RPFLGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 44444444444444 44443 377999999999999999999999998753
|
|
| >KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.2e-08 Score=97.52 Aligned_cols=182 Identities=16% Similarity=0.190 Sum_probs=118.5
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEc--cC------CcEEEcHHHHHhhhhCCCchHHHhhhhhc
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFN--QK------GELLVGTPAKRQAVTNPANTLFGTKRLIG 125 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~--~~------~~~~~G~~A~~~~~~~p~~~~~~~K~llg 125 (676)
..|-||.|+..+.++|....-|..+. ||++... .+ +..+++..|... |.+
T Consensus 12 ~alViDpGS~~traGyaged~Pk~il--------PS~~G~~tk~~~d~~~~~~~y~~~~ai~~----pr~---------- 69 (426)
T KOG0679|consen 12 SALVIDPGSHTTRAGYAGEDSPKAIL--------PSVYGKVTKTDGDAEDKKGYYVDENAIHV----PRP---------- 69 (426)
T ss_pred ceEEEeCCCceEeccccCCCCccccc--------cceeeeeecccCccccccceEeechhccC----CCC----------
Confidence 57899999999999998877777664 7877641 01 123455544321 100
Q ss_pred CCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHH
Q 005807 126 RRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQAT 205 (676)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l 205 (676)
+-+++..+ .+| .+.--+++.+..+|..+.-.+ +.....-++||-|+.=+.+.|+.+
T Consensus 70 ----gmEv~~~i------------------~nG-lv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~ 125 (426)
T KOG0679|consen 70 ----GMEVKTPI------------------KNG-LVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKL 125 (426)
T ss_pred ----CCeeccch------------------hcC-CcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHH
Confidence 00111100 011 122235566666666542221 222234689999998888888887
Q ss_pred HHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHH
Q 005807 206 KDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEF 284 (676)
Q Consensus 206 ~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~ 284 (676)
.+. .+...++...|+.+|+++|++.|.. +.||+|+|++++.++-+ .+|..--.+... ..+||+.++..+.+.
T Consensus 126 ~ElmFE~~nvPAf~L~k~~v~~AFA~Grs----talVvDiGa~~~svsPV--~DG~Vlqk~vvk-s~laGdFl~~~~~q~ 198 (426)
T KOG0679|consen 126 TELMFEKLNVPAFYLAKTAVCTAFANGRS----TALVVDIGATHTSVSPV--HDGYVLQKGVVK-SPLAGDFLNDQCRQL 198 (426)
T ss_pred HHHHHhhcCCceEEEechHHHHHHhcCCC----ceEEEEecCCCceeeee--ecceEeeeeeEe-cccchHHHHHHHHHH
Confidence 665 5777889999999999999987632 67999999999988864 344333333333 689999999999999
Q ss_pred HHHH
Q 005807 285 LVSE 288 (676)
Q Consensus 285 l~~~ 288 (676)
|..+
T Consensus 199 l~~~ 202 (426)
T KOG0679|consen 199 LEPK 202 (426)
T ss_pred Hhhc
Confidence 9876
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.9e-08 Score=103.67 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=57.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH------------cCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEE
Q 005807 187 SEAVITVPAYFNDAQRQATKDAGRI------------AGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVL 254 (676)
Q Consensus 187 ~~~VITVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~ 254 (676)
.-.+||.+.. .++.++++++. ||++...++. |.|++.+...+.++..++++|+||||++++++
T Consensus 89 ~ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLseEke~gVa~IDIGgGTT~iaVf 163 (475)
T PRK10719 89 GAVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSEERNTRVLNIDIGGGTANYALF 163 (475)
T ss_pred cEEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhhhccCceEEEEeCCCceEEEEE
Confidence 4568888765 45556666665 6776666656 99998877654333399999999999999997
Q ss_pred EEeCCeEEEEEecCCCCcchHHHHH
Q 005807 255 EISNGVFEVKATNGDTFLGGEDFDN 279 (676)
Q Consensus 255 ~~~~~~~~v~~~~g~~~lGG~~~D~ 279 (676)
.-..-. ..+..++||+.+..
T Consensus 164 ~~G~l~-----~T~~l~vGG~~IT~ 183 (475)
T PRK10719 164 DAGKVI-----DTACLNVGGRLIET 183 (475)
T ss_pred ECCEEE-----EEEEEecccceEEE
Confidence 643322 24457889987743
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.2e-06 Score=97.50 Aligned_cols=205 Identities=19% Similarity=0.152 Sum_probs=107.3
Q ss_pred HHHHHHHcCC----CeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEE----------EEEe-cCC
Q 005807 205 TKDAGRIAGL----DVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFE----------VKAT-NGD 269 (676)
Q Consensus 205 l~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~----------v~~~-~g~ 269 (676)
..+++...|| +++.-..+..|++++.+.. .++ +++-+|.+ .+..+........ .... .+.
T Consensus 219 ~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~-~g~--~~~~~GT~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (470)
T PRK10331 219 QPSAAALLGLPVGIPVISAGHDTQFALFGSGAG-QNQ--PVLSSGTW--EILMVRSAQVDTSLLSQYAGSTCELDSQSGL 293 (470)
T ss_pred CHHHHHHhCCCCCCeEEEccccHHHHHhCCCCC-CCC--EEEecchh--hhheeecCCCcccccccccccceeccccCce
Confidence 3456666665 4666678888888888752 222 33334543 3322211111100 0000 111
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC-CeeeEEEEcHH
Q 005807 270 TFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG-AKHLNITLTRS 348 (676)
Q Consensus 270 ~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g-~~~~~~~itr~ 348 (676)
...|+..+.....+|+.+.|.. ....+..|.+.++++. ......+.+|.+.....| ...++..-+|.
T Consensus 294 ~~~~~~~~~g~~~~W~~~~~~~--------~~~~y~~l~~~a~~~~----~g~~gl~~~p~~~g~~rg~~~Gl~~~~~~~ 361 (470)
T PRK10331 294 YNPGMQWLASGVLEWVRKLFWT--------AETPYQTMIEEARAIP----PGADGVKMQCDLLACQNAGWQGVTLNTTRG 361 (470)
T ss_pred eeechhhHHHHHHHHHHHHhcc--------cCchHHHHHHHHhcCC----CCCCceEecccccccCceeEECCCCCcCHH
Confidence 1123333444467888777631 0012334444443321 112223345554422211 12233344566
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHcC-CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 349 KFETLVNHLIERTKAPCKNCLKDAN-ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 349 ~fe~~~~~~v~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
+| .+-+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.||.++.... ..++.++|||+.|+.-
T Consensus 362 ~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~~ 437 (470)
T PRK10331 362 HF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWYG 437 (470)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHHh
Confidence 55 44444444443333333321 1113478999999999999999999999999876554 4568899999999875
Q ss_pred cCC
Q 005807 428 RGD 430 (676)
Q Consensus 428 ~~~ 430 (676)
.+.
T Consensus 438 ~G~ 440 (470)
T PRK10331 438 VGE 440 (470)
T ss_pred cCC
Confidence 553
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.6e-07 Score=99.88 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=57.8
Q ss_pred EEEEcHHHHHHHHhHHHHHHHHHHH---HHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhh
Q 005807 342 NITLTRSKFETLVNHLIERTKAPCK---NCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVAL 418 (676)
Q Consensus 342 ~~~itr~~fe~~~~~~v~~i~~~i~---~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~ 418 (676)
+..-++.+| ++-+++.+.-.++ +.+++.+. ..++.|.++||++++|.+.+++.+.||.++....+ .++.++
T Consensus 359 ~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~l 432 (465)
T TIGR02628 359 TLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVA 432 (465)
T ss_pred CCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHH
Confidence 344455554 4444444443333 44444321 24689999999999999999999999998765555 467899
Q ss_pred HHHHHhhhccCC
Q 005807 419 GAAIQGGILRGD 430 (676)
Q Consensus 419 GAal~a~~l~~~ 430 (676)
|||+.|+.-.+.
T Consensus 433 GaA~~a~~a~G~ 444 (465)
T TIGR02628 433 GAAMFGFYGVGE 444 (465)
T ss_pred HHHHHHHHhcCc
Confidence 999999876553
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-06 Score=87.03 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=52.7
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC-CCCCcchhHhhHHHHHhhh
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS-KGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~-~~~~p~~aVa~GAal~a~~ 426 (676)
++.-+...+.+.+...+++.++. ..|+|+||.++.|.+++.+++.++.++. .+.+|..+.|.|||++|..
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 34444444444444444443332 4789999999999999999999998876 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-06 Score=95.56 Aligned_cols=329 Identities=19% Similarity=0.260 Sum_probs=190.1
Q ss_pred EEcHHHHHhhhh----CCCchHHHhhhhhcCCC--------CCHHHH--H--HhccCCeEEEeCCCCCeEEEe-------
Q 005807 100 LVGTPAKRQAVT----NPANTLFGTKRLIGRRF--------NDAQTQ--K--EMKMVPFKIVNAPNGDAWVEA------- 156 (676)
Q Consensus 100 ~~G~~A~~~~~~----~p~~~~~~~K~llg~~~--------~d~~~~--~--~~~~~~~~~~~~~~~~~~v~~------- 156 (676)
-||.+|...... .....++..||+|+... +..... . .....|+...-++.|.+....
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 378887654432 33445788999997532 111110 0 011111221223455554322
Q ss_pred --CCeeeCHHHHHHHHHHHHHHHHHHHhCC--------------CCCeEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 005807 157 --NGQQYSPSQIGAFVLTKMKETAESYLGK--------------SVSEAVITVPAYFNDAQRQATKDAGRIA-------- 212 (676)
Q Consensus 157 --~~~~~~~~ev~a~~L~~l~~~a~~~l~~--------------~~~~~VITVPa~~~~~qr~~l~~Aa~~A-------- 212 (676)
-.-.||-..++.++|..+..+|..+++. ....+++|||......+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 2245777888888888888888766543 2457999999999999999998888766
Q ss_pred CCC---------------------eEEeeChhHHHHHhcccc---------------------CC------C-C--eEEE
Q 005807 213 GLD---------------------VQRIINEPTAAALSYGMN---------------------NK------E-G--LIAV 241 (676)
Q Consensus 213 Gl~---------------------~~~li~Ep~AAal~y~~~---------------------~~------~-~--~vlV 241 (676)
|+. +..=-+|.+|.-+-|... +. . . .|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 111125666654443211 11 1 1 7999
Q ss_pred EeeCCceeEEEEEEEe----CCe-EEE----EEecCCCCcchHHHHHHHHH-HHHHHhhh----------------hccC
Q 005807 242 FDLGGGTFDVSVLEIS----NGV-FEV----KATNGDTFLGGEDFDNALLE-FLVSEFKR----------------TERI 295 (676)
Q Consensus 242 ~D~GgGT~Dvsv~~~~----~~~-~~v----~~~~g~~~lGG~~~D~~l~~-~l~~~~~~----------------~~~~ 295 (676)
+|+||||||+.|-.+. .|. ..+ +-..| -.+.|+|+-..+++ ++...+.+ -+|.
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGG 649 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCC
Confidence 9999999999998876 221 111 12233 67889998666554 34333322 1122
Q ss_pred CCccCH-H-------------HHHHHHHHHHHHHHHcCCCCceeeec--------------ccccc-------CCC--CC
Q 005807 296 DLSQDK-L-------------ALQRLRESAEKAKIELSSTSQTEINL--------------PFITA-------DAS--GA 338 (676)
Q Consensus 296 ~~~~~~-~-------------~~~~L~~~~e~~K~~Ls~~~~~~~~i--------------~~~~~-------~~~--g~ 338 (676)
+-.... + ...+++.++|..-.. .........+ .++.. +.. ..
T Consensus 650 dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 650 DGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 200000 0 011244455543210 0000001100 11110 000 12
Q ss_pred eeeEEEEcHHHHHHHHh---HHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC--------
Q 005807 339 KHLNITLTRSKFETLVN---HLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS-------- 407 (676)
Q Consensus 339 ~~~~~~itr~~fe~~~~---~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~-------- 407 (676)
.++.+.|+.+++...+. -.+..++..+-+++...+ .|.++|+|--||+|.||..+++....++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 45678899999998775 677777777777777654 48999999999999999999999865432
Q ss_pred ------------CCCCcchhHhhHHHHHhhhccCCCceeE
Q 005807 408 ------------KGVNPDEAVALGAAIQGGILRGDVKELL 435 (676)
Q Consensus 408 ------------~~~~p~~aVa~GAal~a~~l~~~~~~~~ 435 (676)
.--||..++|.||.+.......+.+++.
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF~ 843 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNFY 843 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCce
Confidence 2349999999999876554433444443
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.5e-07 Score=99.02 Aligned_cols=209 Identities=17% Similarity=0.155 Sum_probs=110.6
Q ss_pred HHHHHHHHHcCCC---eEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE---e-CCeEEEEEe--cCCC-Cc
Q 005807 203 QATKDAGRIAGLD---VQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI---S-NGVFEVKAT--NGDT-FL 272 (676)
Q Consensus 203 ~~l~~Aa~~AGl~---~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~---~-~~~~~v~~~--~g~~-~l 272 (676)
....++++..||. ++.-..+..|++++.+.... ..+++-+|.+.+-..+..- . ...+..... .+.. ..
T Consensus 211 ~l~~~~a~~~GL~~~pV~~g~~D~~aa~~g~g~~~~--g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (484)
T PRK15027 211 ALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVDA--NQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLM 288 (484)
T ss_pred cccHHHHHHhCCCCCeEEecccHHHHHHhccCcccC--CcEEEEecCceEEEEecCCcccCchhceeecceecCCceEEE
Confidence 3345777778864 45556688888888776543 3455555665543322210 0 011111111 1111 11
Q ss_pred chHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC---------CeeeEE
Q 005807 273 GGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG---------AKHLNI 343 (676)
Q Consensus 273 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g---------~~~~~~ 343 (676)
|+....-...+|+.+.+.. + . ...+.+.+.++ .......+.+|++...... ...++.
T Consensus 289 ~~~~~~g~~~~W~~~~~~~----~---~---~~~~~~~a~~~----~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~ 354 (484)
T PRK15027 289 SVMLSAASCLDWAAKLTGL----S---N---VPALIAAAQQA----DESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTH 354 (484)
T ss_pred EEehhhHHHHHHHHHHhCC----c---c---HHHHHHHHhhC----CCCCCceEEecccccCCCcCCCCCcceEEECCCC
Confidence 2222233345677665521 0 0 22232322221 1112233455655322110 112233
Q ss_pred EEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 344 TLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 344 ~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
..++.+|-..+-+-+--....+-+.+++.+. .++.|+++||+++++.+.+++.+.||.++....+..++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 4456665443333222222333344454443 4689999999999999999999999998866667777889999999
Q ss_pred hhhccCC
Q 005807 424 GGILRGD 430 (676)
Q Consensus 424 a~~l~~~ 430 (676)
|+.-.|.
T Consensus 432 A~~~~G~ 438 (484)
T PRK15027 432 AQIAANP 438 (484)
T ss_pred HHHhcCC
Confidence 9976553
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.7e-07 Score=100.02 Aligned_cols=206 Identities=21% Similarity=0.189 Sum_probs=102.6
Q ss_pred HHHHHHHHcCC----CeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE--eCCeEEEEEe----cCC-CCc
Q 005807 204 ATKDAGRIAGL----DVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI--SNGVFEVKAT----NGD-TFL 272 (676)
Q Consensus 204 ~l~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~--~~~~~~v~~~----~g~-~~l 272 (676)
...++|+..|| +++.-..+-.+++++.+..+.+. ++.=+|...+-.++... .+........ .+. ...
T Consensus 222 l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~--~~~~~gts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (502)
T COG1070 222 LTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDPGD--VSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFIVM 299 (502)
T ss_pred ccHHHHHHhCCCCCCeEEECCchHHHHhccCCCcCCCc--EEEEeccccEEeeeccccccCCccceeeecccCCCeEEEE
Confidence 34577788888 34555678888888888776544 44434433332233221 1111111110 111 123
Q ss_pred chHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcC-CCCceeeeccccccCCCC---------CeeeE
Q 005807 273 GGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELS-STSQTEINLPFITADASG---------AKHLN 342 (676)
Q Consensus 273 GG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls-~~~~~~~~i~~~~~~~~g---------~~~~~ 342 (676)
|+...-....+|+.+.+.... . ...+ .+.+..... ......+..|++..+... .....
T Consensus 300 ~~~~~~~~~l~w~~~~~~~~~----~-----~~~~---~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~ 367 (502)
T COG1070 300 GANNTGGWLLEWLRELFGLAE----S-----YPEL---LEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLT 367 (502)
T ss_pred EEecccHHHHHHHHHHhcccc----C-----cHHH---HHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccc
Confidence 444444455566666664321 0 0111 111111111 111223444554321111 01122
Q ss_pred EEEcHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDA-NITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 343 ~~itr~~fe~~~~~~v~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
...++.+|-..+-+-+--......+.|.+. + ..++.|.++||+++++++.+++.+.||.++..+...+.+.+-||+
T Consensus 368 ~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g---~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~ 444 (502)
T COG1070 368 LPHTRAHLARAVLEGVAFALADGLEALEELGG---KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAA 444 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHH
Confidence 334566665444443333334444555554 4 345799999999999999999999999987755444444444444
Q ss_pred HHhhh
Q 005807 422 IQGGI 426 (676)
Q Consensus 422 l~a~~ 426 (676)
+.+..
T Consensus 445 ~~~~~ 449 (502)
T COG1070 445 LAAAA 449 (502)
T ss_pred HHHHH
Confidence 44443
|
|
| >PLN00130 succinate dehydrogenase (SDH3); Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-09 Score=95.27 Aligned_cols=72 Identities=49% Similarity=0.793 Sum_probs=61.2
Q ss_pred ChhhhHHhhhcccccccccccccccCCCCCCCCCc----ccccccccCCCCCCCCCCceEEEEcCCceEEEEEEEC
Q 005807 1 MAIAGILRSLRRRDVASAHLSACKSLTGNVKPSWA----SANWASLARPFSARPAGNDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~ 72 (676)
||+|||+||+|||+++++|.|.-+++.++..|+.. ++.+....+++...+....++|+|+||+|++++..++
T Consensus 1 ma~~al~rs~rrrdv~sapls~y~~~~~~~~p~w~~s~~~qn~a~~sra~~~kp~~~d~~g~~~gt~n~~~~~~e~ 76 (213)
T PLN00130 1 MAATALFRSIRRRDVVSAPLSVYKSLAGNAQPSWGSSYIGQNYASFSRAFGSKPVVNDILGTGLGTNNAIREEREK 76 (213)
T ss_pred CchHHHHHHHHhhhhhcCchHHHHHhhcCCCCCccccccccchHHHHHHhcCCCCccceeccCCCcchHHHHHHhc
Confidence 99999999999999999999998887776666543 3566777888888777889999999999999998764
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-06 Score=92.96 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=114.4
Q ss_pred EEEEcCCceEEEEEEECCceEEEe-CCCCCcc-cceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 56 IGVDLGTTNSCVAVMEGKNPKVIE-NSEGTRT-TPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 56 vGID~GTt~s~va~~~~~~~~vi~-~~~g~~~-~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
|-||.||-.+++.+..+..|..+. +..+.+. ..++..-...+...+|..+...... +.. .++.
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~---~~~~----------- 73 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLL---ELRY----------- 73 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-ccc---eeec-----------
Confidence 899999999999999887787553 3333332 2222221123345555555421100 000 0000
Q ss_pred HHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEeCCCCCHHHHHHHHHH-HH
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG--KSVSEAVITVPAYFNDAQRQATKDA-GR 210 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~--~~~~~~VITVPa~~~~~qr~~l~~A-a~ 210 (676)
| .. +|. +.--+....+.+++...- ..+. ..-..+++|-|..+....|+.+-+. .+
T Consensus 74 -------p-----~~--------~g~-i~~W~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE 131 (444)
T COG5277 74 -------P-----IE--------NGI-ILNWDAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITELLFE 131 (444)
T ss_pred -------c-----cc--------cCc-cCCcHHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHHHHH
Confidence 0 01 111 111223334444443332 1122 1234689999999999998877554 67
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
...++.+.+..++.++..+.+... .+.+|+|+|.+.++++-+--+-.. .....-..+||.+++..|.+.|...
T Consensus 132 ~~~vp~~~~~~~~~l~~ya~g~~~--~~g~ViD~G~~~t~v~PV~DG~~l---~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 132 TLNVPALYLAIQAVLSLYASGSSD--ETGLVIDSGDSVTHVIPVVDGIVL---PKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred hcCCcceEeeHHHHHHHHhcCCCC--CceEEEEcCCCceeeEeeeccccc---cccceeeecCcHHHHHHHHHHHhhc
Confidence 778888899999999988877542 367999999999999865322111 1112236899999999999988874
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-06 Score=87.66 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=53.9
Q ss_pred HHHHhHHHHHHHHHHHH-HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhh
Q 005807 351 ETLVNHLIERTKAPCKN-CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~ 425 (676)
++++..+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.++.++..+.+|+.+.|.|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 33444444444444442 34433321 4699999999999999999999999999999999999999999985
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-06 Score=95.36 Aligned_cols=197 Identities=17% Similarity=0.171 Sum_probs=105.7
Q ss_pred cCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEe-C------CeEE-EEEe-cC---CCCcchHHHHH
Q 005807 212 AGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEIS-N------GVFE-VKAT-NG---DTFLGGEDFDN 279 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~-~------~~~~-v~~~-~g---~~~lGG~~~D~ 279 (676)
+|.+++.-..+-.|++++.+....+..+++ + ||..+..+... . +... +... .+ -...|+...--
T Consensus 236 ~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~--~--GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g 311 (498)
T PRK00047 236 GEVPIAGIAGDQQAALFGQLCFEPGMAKNT--Y--GTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAG 311 (498)
T ss_pred CCceEEEEccHHHHHHHhCcCCCCCceEEe--e--ccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHH
Confidence 577888778888999998876554333333 3 44444222221 1 1111 1111 11 01234444455
Q ss_pred HHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC---------CeeeEEEEcHHHH
Q 005807 280 ALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG---------AKHLNITLTRSKF 350 (676)
Q Consensus 280 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g---------~~~~~~~itr~~f 350 (676)
.+++|+.+.+... .. ...+...++. .. .....+.+|++...... ...+...-+|.++
T Consensus 312 ~~l~W~~~~~~~~------~~---~~~~~~~a~~----~~-~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l 377 (498)
T PRK00047 312 SAIQWLRDGLKII------SD---ASDSEALARK----VE-DNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHI 377 (498)
T ss_pred HHHHHHHHHhcCC------CC---HHHHHHHHhc----CC-CCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHH
Confidence 5778888777410 01 1112111211 11 22234567776521110 1112233345444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcC-CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 351 ETLVNHLIERTKAPCKNCLKDAN-ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
++-+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.||.++.... ..++.++|||+.|+.-.|
T Consensus 378 ---~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 378 ---IRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcC
Confidence 44445544444444433321 1112468999999999999999999999999875544 556889999999987655
Q ss_pred C
Q 005807 430 D 430 (676)
Q Consensus 430 ~ 430 (676)
.
T Consensus 454 ~ 454 (498)
T PRK00047 454 F 454 (498)
T ss_pred c
Confidence 3
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.8e-06 Score=83.86 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=59.1
Q ss_pred HHHHHhHHHHHHHHHHHH-HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 350 FETLVNHLIERTKAPCKN-CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
.|+++..+...+...+.. +++...+.. -|+|+||.+....+.+++++.++.++..|.+|...-|.|||+++..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 466666666666655554 555544422 3999999999999999999999999999999999999999999874
|
|
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.9e-06 Score=92.25 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=53.5
Q ss_pred HHHhHHHHHHHHHHHHHH----HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 352 TLVNHLIERTKAPCKNCL----KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l----~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
.++.-+++.+.-.+...+ +..+ ..++.|.++||.++++.+.+++.+.||.++....++ ++.++|||+.|+.-
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~ 449 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKA 449 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHh
Confidence 344445555444444332 2233 357899999999999999999999999987655544 68899999999875
Q ss_pred cC
Q 005807 428 RG 429 (676)
Q Consensus 428 ~~ 429 (676)
.|
T Consensus 450 ~G 451 (505)
T TIGR01314 450 LG 451 (505)
T ss_pred cC
Confidence 54
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-05 Score=78.26 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=42.9
Q ss_pred CCcEEEEEc-CCcCcHHHHHHHHHHh---CCCCCCCCCcchhHhhHHHHHhh
Q 005807 378 DVDEVLLVG-GMTRVPKVQEIVTEIF---GKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 378 ~i~~ViLvG-G~s~~p~i~~~l~~~f---g~~~~~~~~p~~aVa~GAal~a~ 425 (676)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 457999999 7999999999999988 56788899999999999999875
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-05 Score=87.42 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=55.6
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHH----cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 346 TRSKFETLVNHLIERTKAPCKNCLKD----ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 346 tr~~fe~~~~~~v~~i~~~i~~~l~~----~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
++.+| +.-+++.+.-.++..++. .+. .++.|+++||.++++.+.+++.+.||.++.... ..++.++|||
T Consensus 376 ~~~~i---~rAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaA 448 (504)
T PTZ00294 376 TRAHI---VRAALEAIALQTNDVIESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAA 448 (504)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHH
Confidence 45544 444444444444444332 243 368999999999999999999999999876555 5557899999
Q ss_pred HHhhhccCC
Q 005807 422 IQGGILRGD 430 (676)
Q Consensus 422 l~a~~l~~~ 430 (676)
+.|+.-.|.
T Consensus 449 l~aa~a~G~ 457 (504)
T PTZ00294 449 LLAGLAVGV 457 (504)
T ss_pred HHHHhhcCc
Confidence 999876554
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-05 Score=79.13 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=50.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC-C----CCCCCCcchhHhhHHHHHh
Q 005807 351 ETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK-S----PSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~-~----~~~~~~p~~aVa~GAal~a 424 (676)
++++.-+...+.+.+...++..+.. -+.|+|+||.++.+.+.+.|++.++. + +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3344455555555555555544321 14699999999999999999999842 2 4456789999999999975
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=88.87 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=65.7
Q ss_pred EEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 342 NITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 342 ~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
+..-+|..+..++..+++.+.-.++.+++...-....++.|.++||.++++.+.+++.+.||.++....+ .++.++|||
T Consensus 407 ~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA 485 (541)
T TIGR01315 407 SMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAA 485 (541)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHH
Confidence 3444577777778888887776666666543211234789999999999999999999999998766554 457899999
Q ss_pred HHhhhccC
Q 005807 422 IQGGILRG 429 (676)
Q Consensus 422 l~a~~l~~ 429 (676)
+.|+.-.+
T Consensus 486 ~lA~~~~G 493 (541)
T TIGR01315 486 MLGAKAAG 493 (541)
T ss_pred HHHHHhcC
Confidence 99987554
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.8e-05 Score=84.01 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=55.8
Q ss_pred EEcHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHH
Q 005807 344 TLTRSKFETLVNHLIERTKAPCKNCLKDAN-ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 344 ~itr~~fe~~~~~~v~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal 422 (676)
.-++.+| +.-+++.+.-.++..++... .....++.|.++||+++++.+.+++.+.||.++.. .+..++.++|||+
T Consensus 367 ~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA~ 442 (493)
T TIGR01311 367 GTTKAHI---ARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAAY 442 (493)
T ss_pred CCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHHH
Confidence 3345554 34444444444443333321 11134789999999999999999999999998765 4445788999999
Q ss_pred HhhhccC
Q 005807 423 QGGILRG 429 (676)
Q Consensus 423 ~a~~l~~ 429 (676)
.|+.-.|
T Consensus 443 ~a~~~~G 449 (493)
T TIGR01311 443 AAGLAVG 449 (493)
T ss_pred HHHhhcC
Confidence 9987555
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=98.30 E-value=6e-05 Score=84.78 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=55.6
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHc----CC--CcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhH
Q 005807 346 TRSKFETLVNHLIERTKAPCKNCLKDA----NI--TIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALG 419 (676)
Q Consensus 346 tr~~fe~~~~~~v~~i~~~i~~~l~~~----~~--~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~G 419 (676)
+|.+| ++-+++.+.-.++..++.. +. ....++.|.++||+++++.+.|++.+.||.++... +..++.++|
T Consensus 377 ~~~~l---~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alG 452 (512)
T PLN02295 377 NKAHI---ARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALG 452 (512)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHH
Confidence 45544 4444554444444444432 21 12347899999999999999999999999988544 445788999
Q ss_pred HHHHhhhccC
Q 005807 420 AAIQGGILRG 429 (676)
Q Consensus 420 Aal~a~~l~~ 429 (676)
||+.|+.-.+
T Consensus 453 aA~~A~~~~G 462 (512)
T PLN02295 453 AAYAAGLAVG 462 (512)
T ss_pred HHHHHHhhcC
Confidence 9999987555
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00049 Score=77.90 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=56.9
Q ss_pred EEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCC-cCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGM-TRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 343 ~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
..-+|.+|-..+-+-+---...+.+.|++.+ ..++.|+++||+ ++++.+.+++.+.||.++....+ .++.+.|||
T Consensus 403 ~~~~~~~~~RAvlEgia~~~~~~l~~l~~~g---~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~a~GaA 478 (536)
T TIGR01234 403 LATDAPLLYRALIEATAFGTRMIMETFTDSG---VPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQAPALGAA 478 (536)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-CcchhHHHH
Confidence 3345665443333222222233334444444 357899999999 99999999999999998766655 468899999
Q ss_pred HHhhhccCC
Q 005807 422 IQGGILRGD 430 (676)
Q Consensus 422 l~a~~l~~~ 430 (676)
+.|+.-.|.
T Consensus 479 ~lA~~~~G~ 487 (536)
T TIGR01234 479 IFAAVAAGV 487 (536)
T ss_pred HHHHHHcCC
Confidence 999876553
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00021 Score=81.23 Aligned_cols=78 Identities=27% Similarity=0.463 Sum_probs=55.5
Q ss_pred EcHHHHHHHHhHHHHHHHHHHH---HHHHHcCCCcCCCcEEEEEcCC-cCcHHHHHHHHHHhCCCCCCCCCcchhHhhHH
Q 005807 345 LTRSKFETLVNHLIERTKAPCK---NCLKDANITIKDVDEVLLVGGM-TRVPKVQEIVTEIFGKSPSKGVNPDEAVALGA 420 (676)
Q Consensus 345 itr~~fe~~~~~~v~~i~~~i~---~~l~~~~~~~~~i~~ViLvGG~-s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GA 420 (676)
-+|.++ ++.+++.+.-.++ +.|++.+ ..++.|+++||+ ++++.+.+++.+.||.++.... +.++.++||
T Consensus 408 ~~~~~l---~RAvlEgia~~~~~~~e~l~~~g---~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGa 480 (548)
T PRK04123 408 TDAPDI---YRALIEATAFGTRAIMECFEDQG---VPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGA 480 (548)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHcC---CCcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHH
Confidence 345544 4445554444333 3444434 347899999999 9999999999999998775444 567889999
Q ss_pred HHHhhhccC
Q 005807 421 AIQGGILRG 429 (676)
Q Consensus 421 al~a~~l~~ 429 (676)
|+.|+.-.+
T Consensus 481 A~lA~~~~G 489 (548)
T PRK04123 481 AIFAAVAAG 489 (548)
T ss_pred HHHHHHHhc
Confidence 999987544
|
|
| >KOG0676 consensus Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=82.43 Aligned_cols=215 Identities=16% Similarity=0.199 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEeeChhHHHHHhccccCCCCeEE
Q 005807 162 SPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAAALSYGMNNKEGLIA 240 (676)
Q Consensus 162 ~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~vl 240 (676)
+.+++ ..+..|+...-..... ...-+++|-|..|...-|+.+.+.. +.-+.+-+.+ .-.|..++++.. +=+
T Consensus 77 ~wd~m-e~iw~~if~~~L~~~P-ee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g~t----tG~ 148 (372)
T KOG0676|consen 77 DWDDM-EKIWHHLFYSELLVAP-EEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASGRT----TGL 148 (372)
T ss_pred chHHH-HHHHHHHHHHhhccCc-ccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcCCe----eEE
Confidence 33343 5555666522111111 2257999999999999998887653 3344444444 123322233332 459
Q ss_pred EEeeCCceeEEE-EEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcC
Q 005807 241 VFDLGGGTFDVS-VLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELS 319 (676)
Q Consensus 241 V~D~GgGT~Dvs-v~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 319 (676)
|+|+|.|-+++. +++ | +.+...-....+||.+++..+...|.+ .+....... -+.-++.+|+.++
T Consensus 149 VvD~G~gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklC 214 (372)
T KOG0676|consen 149 VVDSGDGVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLC 214 (372)
T ss_pred EEEcCCCceeeeeccc---c-cccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhc
Confidence 999999966544 433 1 112222345789999999877777665 121111110 0112344444443
Q ss_pred CCC------------ceeeeccccccCCCCCeeeEEEEcHHHH---HHHHhHHH-----HHHHHHHHHHHHHc--CCCcC
Q 005807 320 STS------------QTEINLPFITADASGAKHLNITLTRSKF---ETLVNHLI-----ERTKAPCKNCLKDA--NITIK 377 (676)
Q Consensus 320 ~~~------------~~~~~i~~~~~~~~g~~~~~~~itr~~f---e~~~~~~v-----~~i~~~i~~~l~~~--~~~~~ 377 (676)
... ...+...+ ...+|.. +.+..+.| |-+++|-+ ..+.+.+-..+-++ ++.+.
T Consensus 215 yvald~~~e~~~~~~~~~l~~~y--~lPDg~~---i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~ 289 (372)
T KOG0676|consen 215 YVALDFEEEEETANTSSSLESSY--ELPDGQK---ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKD 289 (372)
T ss_pred ccccccchhhhcccccccccccc--cCCCCCE---EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHH
Confidence 221 11111111 1111111 33333332 22333222 22333333333333 23333
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
-...|+|+||++..|.+.+++.+.+.
T Consensus 290 L~~nivLsGGtT~~pGl~~Rl~kEl~ 315 (372)
T KOG0676|consen 290 LYENIVLSGGTTMFPGLADRLQKELQ 315 (372)
T ss_pred HHhheEEeCCcccchhHHHHHHHHHh
Confidence 45799999999999999999888763
|
|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00074 Score=75.54 Aligned_cols=51 Identities=29% Similarity=0.519 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
.++.|+++||.++++.+.+++.+.||.++... +..++.++|||+.|+...+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeec-CCCcchHHHHHHHHHHhcC
Confidence 47899999999999999999999999877554 4667889999999987655
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.9e-05 Score=72.93 Aligned_cols=192 Identities=22% Similarity=0.240 Sum_probs=99.6
Q ss_pred HHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH
Q 005807 209 GRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS 287 (676)
Q Consensus 209 a~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 287 (676)
-+..|.++..-=-|+++|.+........+ ...|+|+|||++|.+++.-++.. .-..-.| .|+-++..+...|
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v-~~iHlAG----AG~mVTmlI~sEL-- 177 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV-TAIHLAG----AGNMVTMLINSEL-- 177 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E-EEEEEE-----SHHHHHHHHHHHC--
T ss_pred HHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE-EEEEecC----CchhhHHHHHHhh--
Confidence 34568888888889999998776554444 89999999999999998655443 2222222 3565665544322
Q ss_pred HhhhhccCCCccCHHHHHHHHHHHHHHHHHcCC-----------CCceeeeccccccCC---------CCCeeeEEEEcH
Q 005807 288 EFKRTERIDLSQDKLALQRLRESAEKAKIELSS-----------TSQTEINLPFITADA---------SGAKHLNITLTR 347 (676)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~-----------~~~~~~~i~~~~~~~---------~g~~~~~~~itr 347 (676)
+++ . +..+|.+|+---. ..+..+.-..+.... ++...+...++-
T Consensus 178 ------Gl~----d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~l 241 (332)
T PF08841_consen 178 ------GLE----D------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSL 241 (332)
T ss_dssp ------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-H
T ss_pred ------CCC----C------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccH
Confidence 111 0 1456777763110 001111100010000 011111222233
Q ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHcC--CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC--------CCCCCCCcchhH
Q 005807 348 SKFETLVNHLIERT-KAPCKNCLKDAN--ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK--------SPSKGVNPDEAV 416 (676)
Q Consensus 348 ~~fe~~~~~~v~~i-~~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~~~~~~~p~~aV 416 (676)
+++..+=+..=+++ ..-+.++|++.. -+..+|+.|+|||||+.=--|-+++.+.+.. .+.-..-|..||
T Consensus 242 Ekir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAV 321 (332)
T PF08841_consen 242 EKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAV 321 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHH
Confidence 33332222211111 112233444322 2346799999999999988888899988842 233456799999
Q ss_pred hhHHHHH
Q 005807 417 ALGAAIQ 423 (676)
Q Consensus 417 a~GAal~ 423 (676)
|.|.++.
T Consensus 322 ATGLvls 328 (332)
T PF08841_consen 322 ATGLVLS 328 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999874
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00094 Score=72.61 Aligned_cols=77 Identities=21% Similarity=0.370 Sum_probs=58.2
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCc-CCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC
Q 005807 353 LVNHLIERTKAPCKNCLKDANITI-KDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~ 430 (676)
+....++.+.-..+..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+|.++..+.+++. ++.|||+.|+..++.
T Consensus 388 ia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 388 LARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 333444444444444444332222 56888999999999999999999999998888888888 999999999988775
|
|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00035 Score=72.95 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=51.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-----CCCCCCCCcchhHhhHHHHHh
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-----KSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-----~~~~~~~~p~~aVa~GAal~a 424 (676)
+++.-+...+...+...+.+.. .--..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+.|+|||++|
T Consensus 358 DIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 358 DILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 3444555555544444554431 112579999999999999999999994 557789999999999999985
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0092 Score=65.30 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=61.1
Q ss_pred eeEEEEcHHHHHHHHhHH---HHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC---------
Q 005807 340 HLNITLTRSKFETLVNHL---IERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS--------- 407 (676)
Q Consensus 340 ~~~~~itr~~fe~~~~~~---v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~--------- 407 (676)
++.+.|.-.++++.+-.. +......+-+++.- .+-|.++|+|--+|.|.+|..++.....++.
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 445677777776655433 34444444444443 3458899999999999999999887754321
Q ss_pred -----------CCCCcchhHhhHHHHHhhhccCCCceeE
Q 005807 408 -----------KGVNPDEAVALGAAIQGGILRGDVKELL 435 (676)
Q Consensus 408 -----------~~~~p~~aVa~GAal~a~~l~~~~~~~~ 435 (676)
+-.||...+|.||.+.+..+.-...++.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF~ 855 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNFY 855 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhhccCccee
Confidence 1348999999999887766554444443
|
|
| >KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0047 Score=60.10 Aligned_cols=223 Identities=18% Similarity=0.191 Sum_probs=131.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEE
Q 005807 186 VSEAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVK 264 (676)
Q Consensus 186 ~~~~VITVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~ 264 (676)
-..+.+|-|.--....|+.|.+. .+.-||.-+.+.-...-+.++-|+.. =+|+|-|-|-+-+.-+. ++-.+..
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t----GvVvDSGDGVTHi~PVy-e~~~l~H- 174 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT----GVVVDSGDGVTHIVPVY-EGFVLPH- 174 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc----eEEEecCCCeeEEeeee-cceehhh-
Confidence 34789999998888889888766 57789988877665555555444433 38999999988776432 1111111
Q ss_pred EecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCC-----------ceeeecccccc
Q 005807 265 ATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTS-----------QTEINLPFITA 333 (676)
Q Consensus 265 ~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~~~i~~~~~ 333 (676)
-.+-..+.|+++++-|++++..+= +..+-+.+ .+..+..|+.|.... ++++-++...
T Consensus 175 -LtrRldvAGRdiTryLi~LLl~rG---YafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt- 242 (389)
T KOG0677|consen 175 -LTRRLDVAGRDITRYLIKLLLRRG---YAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVESYT- 242 (389)
T ss_pred -hhhhccccchhHHHHHHHHHHhhc---cccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeeeeee-
Confidence 123356789999999999876541 11111111 123445555554321 1111111100
Q ss_pred CCCCCeeeEEEEcHHHH---HHHHhHHHH-----HHHHHHHHHHHHcCCCc--CCCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 334 DASGAKHLNITLTRSKF---ETLVNHLIE-----RTKAPCKNCLKDANITI--KDVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 334 ~~~g~~~~~~~itr~~f---e~~~~~~v~-----~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
-. ..-.+.+--+.| |.+++|.+- .+.+++-.+++.+.++. .--++|+|.||++.-|.+-+.|++.+.
T Consensus 243 LP---DGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElk 319 (389)
T KOG0677|consen 243 LP---DGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELK 319 (389)
T ss_pred cC---CCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHH
Confidence 00 112244444455 356666442 45566777777766542 224799999999999999888776541
Q ss_pred -------------------CCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 404 -------------------KSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 404 -------------------~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
..+-.++.-...|-.|.|..|.++..
T Consensus 320 qlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 320 QLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 11223444566788888888877554
|
|
| >KOG0797 consensus Actin-related protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0062 Score=64.82 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=100.8
Q ss_pred CeeeCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEEEEeCCCCCHHHHHHH-HHHHHHcCCCeEEeeChhHHHHHhcc
Q 005807 158 GQQYSPSQIGAFVLTKMKETAESYLGKSVS-----EAVITVPAYFNDAQRQAT-KDAGRIAGLDVQRIINEPTAAALSYG 231 (676)
Q Consensus 158 ~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~-----~~VITVPa~~~~~qr~~l-~~Aa~~AGl~~~~li~Ep~AAal~y~ 231 (676)
...++..++++++-+-+.-.....|..+.+ .+|+-||-.|.....+.+ .-.....||....++-|+.||.+..|
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 345667777776655444444555554433 689999999997775554 44567789999999999999998877
Q ss_pred ccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH-hhhhccCCCccCHHHHHHHHHH
Q 005807 232 MNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE-FKRTERIDLSQDKLALQRLRES 310 (676)
Q Consensus 232 ~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~ 310 (676)
+. ...|||+|+-+|.+++++ +|+. +..+.-....||+|+++.|+-++... |. ....++.. +.. +..
T Consensus 274 ls----s~CVVdiGAQkTsIaCVE--dGvs-~~ntri~L~YGGdDitr~f~~ll~rs~FP-y~d~~v~~-~~d----~lL 340 (618)
T KOG0797|consen 274 LS----SACVVDIGAQKTSIACVE--DGVS-LPNTRIILPYGGDDITRCFLWLLRRSGFP-YQDCDVLA-PID----WLL 340 (618)
T ss_pred cc----ceeEEEccCcceeEEEee--cCcc-ccCceEEeccCCchHHHHHHHHHHhcCCC-cccccccc-ccc----HHH
Confidence 65 448999999999988865 3321 11112235789999999998877652 11 01112221 111 123
Q ss_pred HHHHHHHcCCCCcee
Q 005807 311 AEKAKIELSSTSQTE 325 (676)
Q Consensus 311 ~e~~K~~Ls~~~~~~ 325 (676)
+++.|+.+..-....
T Consensus 341 l~~LKe~Fc~l~~a~ 355 (618)
T KOG0797|consen 341 LNQLKEKFCHLRAAE 355 (618)
T ss_pred HHHHHHHhccccHhh
Confidence 567787777654443
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00067 Score=66.09 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=54.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCC-cCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANIT-IKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
..+++.-+++.+.-.++..++...-. ...++.|+++||.++++.+.+++.+.|+.++....+ .++.+.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 34445555555555554444443111 134799999999999999999999999987655544 89999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0086 Score=64.90 Aligned_cols=218 Identities=20% Similarity=0.218 Sum_probs=120.5
Q ss_pred HHHHHHHHcCCCe----EEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeC---C----eEEEEEecCCCCc
Q 005807 204 ATKDAGRIAGLDV----QRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISN---G----VFEVKATNGDTFL 272 (676)
Q Consensus 204 ~l~~Aa~~AGl~~----~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~---~----~~~v~~~~g~~~l 272 (676)
.+.++|+..||.. ..-+-+.-|.+++.+... +.-|++=+|-+|+++.+-+-.. | ....+-...-..=
T Consensus 233 Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~--~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~E 310 (544)
T COG1069 233 LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ--PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYE 310 (544)
T ss_pred cCHHHHHHhCCCCCcEEeccceeccccccccccCC--CCeEEEEeccceEEEEecCCceecCccccccccccCcchhhhc
Confidence 3456666667632 222233333333332221 3446666777777777654321 1 1111111112233
Q ss_pred chHHHHHHHHHHHHHHhhh---------hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC------
Q 005807 273 GGEDFDNALLEFLVSEFKR---------TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG------ 337 (676)
Q Consensus 273 GG~~~D~~l~~~l~~~~~~---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g------ 337 (676)
||..-.-.+++||.+...- +++.++ ......++...+++.+...+.. ...+-++.+..+...
T Consensus 311 gGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~-~~l~~l~~f~GNRsP~aDp~l 387 (544)
T COG1069 311 GGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPLA-SGLHVLDWFNGNRSPLADPRL 387 (544)
T ss_pred ccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCccc-CCcEecccccCCcCCCCCccc
Confidence 6777777788888776321 111111 0112334444455555444322 122223322222111
Q ss_pred ---CeeeEEEEcHHHHHHHHhHHHHHHH---HHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCC
Q 005807 338 ---AKHLNITLTRSKFETLVNHLIERTK---APCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVN 411 (676)
Q Consensus 338 ---~~~~~~~itr~~fe~~~~~~v~~i~---~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~ 411 (676)
...+++.-+.+.+-.+..-.+..+. +.|-+++++.+ ..|+.|+.+||-.+.|.+.+.+.+..|.++..+ .
T Consensus 388 ~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~ 463 (544)
T COG1069 388 KGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-A 463 (544)
T ss_pred eeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhcCCeEEee-c
Confidence 1234455556655566666555554 34555666666 457999999999999999999999999877665 7
Q ss_pred cchhHhhHHHHHhhhccCC
Q 005807 412 PDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 412 p~~aVa~GAal~a~~l~~~ 430 (676)
.+++++.|+|++|+.-.+.
T Consensus 464 s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 464 SDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred ccchhhhHHHHHHHHHhcc
Confidence 7889999999999976654
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0053 Score=65.98 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=94.1
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
.-||||+|||.+.+-+.+ -.+.|..+...+|-+.-.+ .+.+|=... .|-.++
T Consensus 4 ~SVGIDIGTSTTQlvfSr----l~l~n~a~~~~vPri~I~d--keViYrS~I-------------~fTPl~--------- 55 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSR----LTLENRASGFSVPRIEIVD--KEVIYRSPI-------------YFTPLL--------- 55 (473)
T ss_pred EEEEEeecCCceeEEEEE----eEEEeccCCCccceEEEec--cEEEecCCc-------------cccCCC---------
Confidence 358999999999997743 2556777777778766552 234431110 011111
Q ss_pred HHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Q 005807 134 QKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAG 213 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AG 213 (676)
....++.+.+-..+....++.--..-...-.-++||==+.-.+.+|..+..-+..||
T Consensus 56 -----------------------~~~~ID~~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aG 112 (473)
T PF06277_consen 56 -----------------------SQTEIDAEALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAG 112 (473)
T ss_pred -----------------------CCCccCHHHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcC
Confidence 112233444433333322221100001122356777777777888888888888887
Q ss_pred CCeEEe---eChhHHHHHhcccc---CCC-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 005807 214 LDVQRI---INEPTAAALSYGMN---NKE-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDF 277 (676)
Q Consensus 214 l~~~~l---i~Ep~AAal~y~~~---~~~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 277 (676)
==++.- -.|+.-|+-..|.. +.. ..|+=+|+||||+.+++++-. . +.+ .++.++||+.+
T Consensus 113 DFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G--~--v~~-T~cl~IGGRLi 178 (473)
T PF06277_consen 113 DFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNG--E--VID-TACLDIGGRLI 178 (473)
T ss_pred CEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECC--E--EEE-EEEEeeccEEE
Confidence 533322 24555555544332 222 389999999999999996633 2 223 33477888754
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.74 Score=47.16 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHh-----CCCCCCCCCcchhHhhHHHHHh
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-----GKSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f-----g~~~~~~~~p~~aVa~GAal~a 424 (676)
++++...+.+.+.+...+++...... .|+|+||....+.+++.+.+.+ ..++..+..|....+.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 45555556666666666666554321 2999999999987777774444 3345567889999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.11 Score=56.13 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=49.2
Q ss_pred eEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHH-HhCCC-CCCCCCcchhHhh
Q 005807 341 LNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTE-IFGKS-PSKGVNPDEAVAL 418 (676)
Q Consensus 341 ~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~-~fg~~-~~~~~~p~~aVa~ 418 (676)
-.+.+|..+++++. ---..+..-++-.|++++++..+|+.|+|.||++.---+.+.+.= .++.. .-+..-...+.-.
T Consensus 291 ~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al~ 369 (412)
T PF14574_consen 291 DDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAALA 369 (412)
T ss_dssp S-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHHH
T ss_pred CCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHHH
Confidence 46889999998753 333456667788899999999999999999999987777777642 12211 1111222345666
Q ss_pred HHHHH
Q 005807 419 GAAIQ 423 (676)
Q Consensus 419 GAal~ 423 (676)
||.+.
T Consensus 370 GA~~~ 374 (412)
T PF14574_consen 370 GARMA 374 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0069 Score=68.65 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 353 LVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 353 ~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+++.+.||.++.....+ ++.++|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 45555665555555555554432 457899999999999999999999999977655555 6889999999985
|
|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.049 Score=55.50 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=39.6
Q ss_pred CCCcEEEEEcC-CcCcHHHHHHHHHHhC---CCCCCCCCcchhHhhHHHH
Q 005807 377 KDVDEVLLVGG-MTRVPKVQEIVTEIFG---KSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 377 ~~i~~ViLvGG-~s~~p~i~~~l~~~fg---~~~~~~~~p~~aVa~GAal 422 (676)
..++.|+++|| .+..|.+++.+...+. .+.+.+.|+...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 55789999999 6779999999998874 5677888999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.015 Score=64.39 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=56.2
Q ss_pred EEcHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHH
Q 005807 344 TLTRSKFETLVNHLIERTKAPCKNCLKDA-NITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 344 ~itr~~fe~~~~~~v~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal 422 (676)
.-+|.+|-..+-+-+--....+-+.|++. + ..++.|.++||+++++++.+++.+.+|.++... +.++.++|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~---~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRG---KPISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHH
Confidence 34566554333322222223333444442 3 247899999999999999999999999988543 36789999999
Q ss_pred HhhhccCCC
Q 005807 423 QGGILRGDV 431 (676)
Q Consensus 423 ~a~~l~~~~ 431 (676)
.|+.-.+..
T Consensus 430 ~a~~~~G~~ 438 (454)
T TIGR02627 430 VQLMALDEI 438 (454)
T ss_pred HHHHhcCCc
Confidence 998766543
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.035 Score=61.81 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~ 430 (676)
.++.|.++||+++++.+.+++.+.+|.++.... .++.+.|||+.|+.-.|.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999885433 378999999999876654
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.021 Score=64.50 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=43.8
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
.++.|+++||+++++.+.+++.+.||.++....++ ++.++|||+.|+.-.|
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 47899999999999999999999999988655544 5789999999987554
|
|
| >KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.77 Score=46.73 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=53.7
Q ss_pred CeEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEeeChhHHHHHhc---cccCCC-----C-eEEEEeeCCceeEEEEEEE
Q 005807 187 SEAVITVPAYFNDAQRQA-TKDAGRIAGLDVQRIINEPTAAALSY---GMNNKE-----G-LIAVFDLGGGTFDVSVLEI 256 (676)
Q Consensus 187 ~~~VITVPa~~~~~qr~~-l~~Aa~~AGl~~~~li~Ep~AAal~y---~~~~~~-----~-~vlV~D~GgGT~Dvsv~~~ 256 (676)
..+++|=|.+--++-.+. ..-..+.-+++.+ ..-+.|+.+++ ..++.+ . ..+|+|-|-+-|-+.-+-.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 468899887654443333 3344566677643 23333333333 233222 2 8999999998776654322
Q ss_pred eCCeEEEEEecCCCCcchHHHHHHHHHHHH
Q 005807 257 SNGVFEVKATNGDTFLGGEDFDNALLEFLV 286 (676)
Q Consensus 257 ~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~ 286 (676)
+.....+.. -...||..++..|.+++.
T Consensus 172 --g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 --GIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred --CcchhhceE-EeecchHHHHHHHHHHhh
Confidence 211111112 257899999999888764
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.11 Score=58.34 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCeEEeeChhHHHHH-hccccCC---CCeEEEEeeCCceeEEEEEEE
Q 005807 201 QRQATKDAGRIAGLDVQRIINEPTAAAL-SYGMNNK---EGLIAVFDLGGGTFDVSVLEI 256 (676)
Q Consensus 201 qr~~l~~Aa~~AGl~~~~li~Ep~AAal-~y~~~~~---~~~vlV~D~GgGT~Dvsv~~~ 256 (676)
....+.++-+..|+++ .+|+..+=|.+ +.+.... .+..+|+|+|||++.+++++-
T Consensus 98 ~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecC
Confidence 3445566667789997 45554444444 3343321 136899999999999999763
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.19 Score=56.14 Aligned_cols=76 Identities=18% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCeEEeeChhHHHHHhccccC---CCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 005807 201 QRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN---KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDF 277 (676)
Q Consensus 201 qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~---~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 277 (676)
....+.++-+..|+++-.|-.|-+|--.+.+... ..+..+|+|+|||++.+++++ ++.+.. ..+.++|.-.+
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl 167 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT--GAQATS---LFSLSMGCVTW 167 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec--CCceee---eeEEeccchHH
Confidence 3555666777789997444444444444334332 123689999999999999865 332211 22356777766
Q ss_pred HHHH
Q 005807 278 DNAL 281 (676)
Q Consensus 278 D~~l 281 (676)
.+.+
T Consensus 168 ~e~f 171 (496)
T PRK11031 168 LERY 171 (496)
T ss_pred HHHh
Confidence 5543
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.061 Score=47.71 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=28.1
Q ss_pred EEEEeeCCceeEEEEEEEe-CCeEEEEEecCCCC--cchHHHH--HHHHHHHHHHh
Q 005807 239 IAVFDLGGGTFDVSVLEIS-NGVFEVKATNGDTF--LGGEDFD--NALLEFLVSEF 289 (676)
Q Consensus 239 vlV~D~GgGT~Dvsv~~~~-~~~~~v~~~~g~~~--lGG~~~D--~~l~~~l~~~~ 289 (676)
++++|+|++++.+++++.. .+.++++....... +=+.++. +.+.+-+..-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~ 56 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAI 56 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--H
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHH
Confidence 5899999999999999873 44555543321111 1166666 55555554433
|
|
| >KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.5 Score=51.26 Aligned_cols=122 Identities=10% Similarity=0.006 Sum_probs=72.7
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhCCC----CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEeeChhHHHHHhccccC
Q 005807 160 QYSPSQIGAFVLTKMKETAESYLGKS----VSEAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAAALSYGMNN 234 (676)
Q Consensus 160 ~~~~~ev~a~~L~~l~~~a~~~l~~~----~~~~VITVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~ 234 (676)
.++--++...+|.|+.. ++|.. ..-+++|-+..-....|+.|-+- .+.-|++.+.+=-+..=+... ....
T Consensus 90 VvtNwel~E~ilDY~F~----~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h-N~~~ 164 (645)
T KOG0681|consen 90 VVTNWELMEQILDYIFG----KLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH-NYGK 164 (645)
T ss_pred ccccHHHHHHHHHHHHH----hcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh-ccCc
Confidence 34445566666666554 34432 23478888877777788888665 466788876554333322221 0111
Q ss_pred CCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 235 KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 235 ~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
... ..||+++|..+|-|-.+--+...+ . ...-.++||.....-|.+++..++
T Consensus 165 ~~~~~~liis~g~~~T~vipvldG~~il--~-~~kRiN~GG~qa~dYL~~Lmq~Ky 217 (645)
T KOG0681|consen 165 SSNKSGLIISMGHSATHVIPVLDGRLIL--K-DVKRINWGGYQAGDYLSRLMQLKY 217 (645)
T ss_pred ccCcceEEEecCCCcceeEEEecCchhh--h-cceeeccCcchHHHHHHHHHhccC
Confidence 112 689999999999887654333222 2 233478999988777777666553
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.93 Score=50.20 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCC--CHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccC--C-CCeEE
Q 005807 166 IGAFVLTKMKETAESYLGKSVSEAVITVPAYF--NDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN--K-EGLIA 240 (676)
Q Consensus 166 v~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~--~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~--~-~~~vl 240 (676)
.+...+..|+..++...+..+.++.+.--+.+ -...-+.+..+-+..|+++-.|--|-+|--.++|.-. . .+..+
T Consensus 53 ai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~l 132 (492)
T COG0248 53 AIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGL 132 (492)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence 34444444555444444445555322111111 1223456788888899997666666666555444332 2 44899
Q ss_pred EEeeCCceeEEEEEE
Q 005807 241 VFDLGGGTFDVSVLE 255 (676)
Q Consensus 241 V~D~GgGT~Dvsv~~ 255 (676)
|+|+|||+|.+++..
T Consensus 133 v~DIGGGStEl~~g~ 147 (492)
T COG0248 133 VIDIGGGSTELVLGD 147 (492)
T ss_pred EEEecCCeEEEEEec
Confidence 999999999999976
|
|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.3 Score=50.87 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCeEEeeChhHHHHHhc-cccC--CCCeEEEEeeCCceeEEEEEE
Q 005807 203 QATKDAGRIAGLDVQRIINEPTAAALSY-GMNN--KEGLIAVFDLGGGTFDVSVLE 255 (676)
Q Consensus 203 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~--~~~~vlV~D~GgGT~Dvsv~~ 255 (676)
..+...-+..|+++ ++++..+=|.+.| +... .....+++|+|||++.++++.
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEec
Confidence 33444445679987 5666666655544 3221 112459999999999999865
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.12 Score=54.70 Aligned_cols=56 Identities=20% Similarity=0.371 Sum_probs=47.8
Q ss_pred HHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 370 KDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 370 ~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+..+....+.+.|+.|||.|+...|-+.|.+.||.++... +..++.+.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 3456666677999999999999999999999999977655 7788899999999774
|
|
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.08 E-value=2 Score=43.67 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=17.3
Q ss_pred eEEEEcCCceEEEEEEECC
Q 005807 55 VIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~ 73 (676)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 7999999999999999855
|
|
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.23 Score=51.39 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=12.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC-CCCCCCcchhHhhHHHH
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS-PSKGVNPDEAVALGAAI 422 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~-~~~~~~p~~aVa~GAal 422 (676)
.+++-..+++.+.|++.....+..+.+ -.++.+||.+ |.+...|.+.+|.+ ++.+..+.-+-|.||++
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 334444555555555554444554433 2345556655 88888999999965 45556678899999985
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.38 Score=49.03 Aligned_cols=85 Identities=22% Similarity=0.190 Sum_probs=48.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEe---eChhHHHHHhcccc---CCCC-eEEEEeeCCceeEEEEEEEeCCe
Q 005807 188 EAVITVPAYFNDAQRQATKDAGRIAGLDVQRI---INEPTAAALSYGMN---NKEG-LIAVFDLGGGTFDVSVLEISNGV 260 (676)
Q Consensus 188 ~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~AAal~y~~~---~~~~-~vlV~D~GgGT~Dvsv~~~~~~~ 260 (676)
.++||=-..-...+|..+..-...||==++.- -.|+.-|.-..+.. .+.. .++=+|+||||+..+++...+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc--
Confidence 45666666566666666666555665333221 13444443333322 1222 789999999999999965432
Q ss_pred EEEEEecCCCCcchHHH
Q 005807 261 FEVKATNGDTFLGGEDF 277 (676)
Q Consensus 261 ~~v~~~~g~~~lGG~~~ 277 (676)
+..+ .+.++||+-+
T Consensus 167 --v~dT-aCLdiGGRLi 180 (473)
T COG4819 167 --VSDT-ACLDIGGRLI 180 (473)
T ss_pred --cccc-eeeecCcEEE
Confidence 1222 2356777644
|
|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.2 Score=44.04 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEeCCCCCHH-HHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCcee
Q 005807 171 LTKMKETAESYLGKSVSEAVITVPAYFNDA-QRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTF 249 (676)
Q Consensus 171 L~~l~~~a~~~l~~~~~~~VITVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~ 249 (676)
..++.+.+++..+.++ .++++-..|... .....++.|. |++ .|.-.+......+.++++|+|..|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aNW----------~Ata~~~~e~~~dsci~VD~GSTTt 142 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-ANW----------VATARFLAEEIKDSCILVDMGSTTT 142 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hhh----------HHHHHHHHHhcCCceEEEecCCccc
Confidence 4567777777777665 788888888764 2221222111 111 1111111122335799999999999
Q ss_pred EEEEEE
Q 005807 250 DVSVLE 255 (676)
Q Consensus 250 Dvsv~~ 255 (676)
|+.-+.
T Consensus 143 DIIPi~ 148 (330)
T COG1548 143 DIIPIK 148 (330)
T ss_pred ceEeec
Confidence 998654
|
|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=91.53 E-value=21 Score=37.75 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh---CCCCCCCC---CcchhHhhHHHHH
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF---GKSPSKGV---NPDEAVALGAAIQ 423 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f---g~~~~~~~---~p~~aVa~GAal~ 423 (676)
+++.|+|.||.+...++++.|.+.+ +.++..+. --|.+++.|++=+
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 4688999999999999999999988 44443332 3477888888743
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.3 Score=42.54 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCeEEeeChhHHHHHh
Q 005807 200 AQRQATKDAGRIAGLDVQRIINEPTAAALS 229 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~ 229 (676)
...+.+.++.+.+||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 357788999999999999999999998764
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.7 Score=49.87 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=56.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCc-CCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 351 ETLVNHLIERTKAPCKNCLKDANITI-KDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
+.+++..++.+.-..+++++...-+. ..++.+-+=||.+++.++.+...+.+|.++.++.+ .|+.|+|||+.|+.-.+
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGla~G 452 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHHHhhhhC
Confidence 34455555555555444444322111 25788889999999999999999999988776655 56789999999998766
Q ss_pred CC
Q 005807 430 DV 431 (676)
Q Consensus 430 ~~ 431 (676)
-.
T Consensus 453 ~w 454 (499)
T COG0554 453 FW 454 (499)
T ss_pred cC
Confidence 43
|
|
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.58 E-value=5.5 Score=40.06 Aligned_cols=48 Identities=23% Similarity=0.242 Sum_probs=37.2
Q ss_pred CcCCCcEEEEEcCCcCcHHHHHHHHHHhC----CCCCCCCCcchhHhhHHHH
Q 005807 375 TIKDVDEVLLVGGMTRVPKVQEIVTEIFG----KSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 375 ~~~~i~~ViLvGG~s~~p~i~~~l~~~fg----~~~~~~~~p~~aVa~GAal 422 (676)
-+..+|.|+|+||.++...+-++|.+... .-++-..+-.+|.|.|+..
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 34678999999999999999999998874 2223345667789999854
|
|
| >PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=8.1 Score=44.86 Aligned_cols=23 Identities=30% Similarity=0.344 Sum_probs=19.3
Q ss_pred CCCCceEEEEcCCceEEEEEEEC
Q 005807 50 PAGNDVIGVDLGTTNSCVAVMEG 72 (676)
Q Consensus 50 ~~~~~vvGID~GTt~s~va~~~~ 72 (676)
....+++|||+|.|++.+++++.
T Consensus 15 ~~~~~~L~iDIGGT~ir~al~~~ 37 (638)
T PRK14101 15 HADGPRLLADVGGTNARFALETG 37 (638)
T ss_pred CCCCCEEEEEcCchhheeeeecC
Confidence 44567999999999999999853
|
|
| >KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.31 Score=52.78 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCcCC--CcEEEEEcCCcCcHHHHHHHHHHh------C--CCCCCCCCcchhHhhHHHHHhhh
Q 005807 361 TKAPCKNCLKDANITIKD--VDEVLLVGGMTRVPKVQEIVTEIF------G--KSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 361 i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~i~~~l~~~f------g--~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+.+++..+|.....+... ++.|+|+||+|.+|.+...|+..+ | ..+....||....=+||+-+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 344555555554322222 799999999999999999998876 2 23456789999999999999886
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.11 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=17.9
Q ss_pred eEEEEcCCceEEEEEEECCceE
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPK 76 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~ 76 (676)
|++||+|++.++++++..+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~ 22 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG 22 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCC
Confidence 6899999999999999876544
|
|
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=88.85 E-value=34 Score=36.01 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF 402 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f 402 (676)
.++.|+|+||-+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999987
|
|
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.95 Score=46.76 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCeEEeeChhHHHHHhc-ccc---CCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 005807 203 QATKDAGRIAGLDVQRIINEPTAAALSY-GMN---NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFD 278 (676)
Q Consensus 203 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~---~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D 278 (676)
..+.+.-+..|+++. +|+..+=|.+.| +.. ...+..+|+|+|||++.+++++- +.+.- ..+.++|.-.+.
T Consensus 75 ~~~~~i~~~tGi~i~-iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~--~~~~~---~~Sl~lG~vrl~ 148 (285)
T PF02541_consen 75 EFLDRIKKETGIDIE-IISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN--GKVVF---SQSLPLGAVRLT 148 (285)
T ss_dssp HHHHHHHHHHSS-EE-EE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET--TEEEE---EEEES--HHHHH
T ss_pred HHHHHHHHHhCCceE-EecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC--CeeeE---eeeeehHHHHHH
Confidence 344555566799874 455444444333 221 12348999999999999998653 32211 223578887776
Q ss_pred HHH
Q 005807 279 NAL 281 (676)
Q Consensus 279 ~~l 281 (676)
+.+
T Consensus 149 e~~ 151 (285)
T PF02541_consen 149 ERF 151 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >COG5026 Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.29 E-value=5.3 Score=42.74 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=21.6
Q ss_pred CCCCCCCCCCceEEEEcCCceEEEEEEE
Q 005807 44 RPFSARPAGNDVIGVDLGTTNSCVAVME 71 (676)
Q Consensus 44 ~~~~~~~~~~~vvGID~GTt~s~va~~~ 71 (676)
.+++.......++.||||.||.+++++.
T Consensus 66 ~~~p~g~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 66 APLPTGNESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred cCCCCCCCCCCEEEEecCCceEEEEEEE
Confidence 3444444567899999999999999874
|
|
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=85.94 E-value=3.9 Score=41.77 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=44.5
Q ss_pred CcEEEEEcC--CcCcH-HHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEE
Q 005807 379 VDEVLLVGG--MTRVP-KVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLL 436 (676)
Q Consensus 379 i~~ViLvGG--~s~~p-~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~ 436 (676)
...|+|.|- +.+.| .+++.|++.|..++. .+.. +..|.|+|+.|--+.+..++++=
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gGk~~iLG 321 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSGKREILG 321 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCCcceEee
Confidence 358999987 99999 999999999985433 3333 77899999999988887777653
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
Probab=85.81 E-value=11 Score=40.31 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=56.4
Q ss_pred EEEcHHHHHHHHhHHHHHHHH-HHHHHHHHcCCCcCCCcE-EEEEcCCcCcHHHHHHHHHHhCC-CCCC-CCCcchhHhh
Q 005807 343 ITLTRSKFETLVNHLIERTKA-PCKNCLKDANITIKDVDE-VLLVGGMTRVPKVQEIVTEIFGK-SPSK-GVNPDEAVAL 418 (676)
Q Consensus 343 ~~itr~~fe~~~~~~v~~i~~-~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~i~~~l~~~fg~-~~~~-~~~p~~aVa~ 418 (676)
..-.+.++-..++..+++++- .++..+++.+. +. |.|.||.+..-..-..|.+..+. ++.. +.-.|..++.
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~-----~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTGI-----DNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 345677888778887776654 45566666653 45 99999999999998888888653 3444 4455778999
Q ss_pred HHHHHhhhccC
Q 005807 419 GAAIQGGILRG 429 (676)
Q Consensus 419 GAal~a~~l~~ 429 (676)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999886443
|
The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A. |
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=85.68 E-value=15 Score=45.75 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=49.3
Q ss_pred EcHHHHHHHHhHHH-HHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCC-CCCCCCcchhHhhHHHH
Q 005807 345 LTRSKFETLVNHLI-ERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS-PSKGVNPDEAVALGAAI 422 (676)
Q Consensus 345 itr~~fe~~~~~~v-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~-~~~~~~p~~aVa~GAal 422 (676)
++.++...-+..++ +...+.|+.+....+.++.+ -.++..||.+ |...-.|.+.+|.+ ++.+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444443333333 34445566666666766544 3444455554 88888999999976 77888999999999976
|
|
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.23 E-value=6.8 Score=40.81 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=43.5
Q ss_pred CCcEEEEEcCCcCcH--HHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeE
Q 005807 378 DVDEVLLVGGMTRVP--KVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELL 435 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p--~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~ 435 (676)
+++.|+|-||-++.+ .+.+.+++.+... ...-...+-++|||+.|..+.+..++++
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~il 320 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDIL 320 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceee
Confidence 468999999999998 8888998888543 2333458999999999988776666654
|
|
| >KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.58 E-value=5.5 Score=42.28 Aligned_cols=154 Identities=19% Similarity=0.281 Sum_probs=81.2
Q ss_pred CCCceEEEEcCCceEEEEEEE-CCc----eEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhc
Q 005807 51 AGNDVIGVDLGTTNSCVAVME-GKN----PKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIG 125 (676)
Q Consensus 51 ~~~~vvGID~GTt~s~va~~~-~~~----~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg 125 (676)
...++|-||=|+|.|.|-+|. +.. +-.+..+-=....|-.-+| ..+|......++.||.
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsf----------------addp~~aA~Sl~~LLd 128 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSF----------------ADDPEEAANSLRPLLD 128 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCccccc----------------CCChHHHHHhHHHHHH
Confidence 356899999999999998874 221 1111111101112333333 3345555556666663
Q ss_pred CCCCCHHHHHHhccCCeEEEeCCCCCe-EEE-eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHH
Q 005807 126 RRFNDAQTQKEMKMVPFKIVNAPNGDA-WVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQ 203 (676)
Q Consensus 126 ~~~~d~~~~~~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~ 203 (676)
.. ....|....+ ..+ .++ .-|-.+.|.+-+..+|..+++..+....-.+..-.++|=.
T Consensus 129 ~A---------~~~vP~~~~~---kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~-------- 188 (453)
T KOG1385|consen 129 VA---------EAFVPREHWK---KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD-------- 188 (453)
T ss_pred HH---------HhhCCHhHhc---cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeecc--------
Confidence 22 1122222111 111 233 4567788999999999999998874333222221122211
Q ss_pred HHHHHHHHcCCCeEEeeChhHHHH--Hhcccc---CC-CCeEEEEeeCCceeEEEEEE
Q 005807 204 ATKDAGRIAGLDVQRIINEPTAAA--LSYGMN---NK-EGLIAVFDLGGGTFDVSVLE 255 (676)
Q Consensus 204 ~l~~Aa~~AGl~~~~li~Ep~AAa--l~y~~~---~~-~~~vlV~D~GgGT~Dvsv~~ 255 (676)
-..|-.-|- +.|... .. ...+.|+|+|||+|.++..-
T Consensus 189 ---------------GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 189 ---------------GTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ---------------CcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 112222111 223222 12 23899999999999999865
|
|
| >PLN02920 pantothenate kinase 1 | Back alignment and domain information |
|---|
Probab=82.50 E-value=8.2 Score=41.15 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=37.6
Q ss_pred CCCcEEEEEcCCcCcH-HHHHHHHHHh------CCCCCCCCCcchhHhhHHHHHhh
Q 005807 377 KDVDEVLLVGGMTRVP-KVQEIVTEIF------GKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 377 ~~i~~ViLvGG~s~~p-~i~~~l~~~f------g~~~~~~~~p~~aVa~GAal~a~ 425 (676)
.+++.|+++|.+.+.+ ..++.|.-.+ ..+....-+.....|.||++...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 6789999999999998 7777554333 24556678899999999987644
|
|
| >TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family | Back alignment and domain information |
|---|
Probab=81.35 E-value=69 Score=33.38 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIF 402 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~f 402 (676)
.++.|+|+||.+...++++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999887
|
This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. |
| >PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=81.22 E-value=7.7 Score=41.32 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=46.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC----CCCcchhHhhHHHHHhhh
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK----GVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~----~~~p~~aVa~GAal~a~~ 426 (676)
+++.-+.+-+...|.+.++... ...+.|+++||+++.|.|.++|++.++.++.. ..+++.-=|..-|++|..
T Consensus 263 D~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 263 DVQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3444455555555666665433 22468999999999999999999999633322 245555555666666654
|
|
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=80.97 E-value=1.8 Score=43.52 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=17.7
Q ss_pred ceEEEEcCCceEEEEEEECC
Q 005807 54 DVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~ 73 (676)
+++|||+|||++++++++..
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 58999999999999998843
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X .... |
| >COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.72 E-value=36 Score=29.83 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-------------cCCCHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Q 005807 577 LIDIRNNADTTIYSIEKSLGEYR-------------EKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKI 643 (676)
Q Consensus 577 ~~~~~n~le~~i~~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i 643 (676)
....|-.+|.-+.+++..|+++. +.+-.-.++++.+.|++=.+.|+-. ...++..-+.+++.+..+
T Consensus 25 ~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r-i~tLekQe~~l~e~l~eL 103 (119)
T COG1382 25 VILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR-IKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34445556666666666664432 1122234555555555555555432 555566666666666666
Q ss_pred HHHHhcCCCCCC
Q 005807 644 GQHMAGGSSDNS 655 (676)
Q Consensus 644 ~~~~~~~~~~~~ 655 (676)
-..+++..++.+
T Consensus 104 q~~i~~~l~~~~ 115 (119)
T COG1382 104 QSEIQKALGDAA 115 (119)
T ss_pred HHHHHHHhhccc
Confidence 666665444333
|
|
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
Probab=80.50 E-value=5.2 Score=42.66 Aligned_cols=74 Identities=24% Similarity=0.266 Sum_probs=46.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC-CCCC----CCCcchhHhhHHHHHh
Q 005807 350 FETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK-SPSK----GVNPDEAVALGAAIQG 424 (676)
Q Consensus 350 fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~-~~~~----~~~p~~aVa~GAal~a 424 (676)
-++++..+.+-+...|.+.++.... +++.|+++||+++.|.|.+.|++.++. ++.. .++|+.-=|.+-|++|
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La 335 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHH
Confidence 3445555566666666666666542 368999999999999999999999965 3321 2444444455556666
Q ss_pred hh
Q 005807 425 GI 426 (676)
Q Consensus 425 ~~ 426 (676)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B. |
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=80.34 E-value=78 Score=32.93 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCCeEEEEeCCCCCHHH------------HHHHHHHH-HHcCCCeEEeeChhHHHHHhcccc---CCCCeEEEEeeCCce
Q 005807 185 SVSEAVITVPAYFNDAQ------------RQATKDAG-RIAGLDVQRIINEPTAAALSYGMN---NKEGLIAVFDLGGGT 248 (676)
Q Consensus 185 ~~~~~VITVPa~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~---~~~~~vlV~D~GgGT 248 (676)
++..+.|++|...+... .-.+++.. +..|++ +.+.|+..|+|++-... +..++++++.+|.|-
T Consensus 57 ~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi 135 (318)
T TIGR00744 57 EIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL 135 (318)
T ss_pred ceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc
Confidence 45567788886553211 11233332 344776 57999999999864322 223488888888775
Q ss_pred eEEEEE
Q 005807 249 FDVSVL 254 (676)
Q Consensus 249 ~Dvsv~ 254 (676)
..+++
T Consensus 136 -G~giv 140 (318)
T TIGR00744 136 -GGGII 140 (318)
T ss_pred -EEEEE
Confidence 45544
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 676 | ||||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 0.0 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 0.0 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 0.0 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-160 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 1e-160 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 1e-158 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 1e-146 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-111 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 1e-111 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 1e-106 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 1e-106 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 1e-106 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 1e-105 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 1e-105 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-105 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 1e-105 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-105 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-105 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 1e-105 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-105 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-105 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-105 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-105 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 1e-105 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-105 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-105 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-105 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-104 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-104 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-104 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-104 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 1e-104 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-104 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-104 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-104 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-103 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-103 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 1e-103 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 1e-103 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 1e-103 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-103 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 1e-103 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-103 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-102 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 1e-102 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-102 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-102 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-102 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-101 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-100 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 4e-99 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 5e-63 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 7e-63 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 1e-62 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 2e-61 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 6e-60 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 7e-60 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-54 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-53 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 5e-53 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 7e-53 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 8e-49 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 9e-45 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 2e-44 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-44 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-43 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 3e-43 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 3e-41 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 2e-35 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 2e-33 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 4e-07 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 2e-06 |
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 676 | |||
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 1e-130 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 1e-120 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 1e-119 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 1e-100 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 1e-90 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 3e-89 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 4e-89 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 5e-87 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 3e-35 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 1e-29 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 3e-22 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-20 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 2e-13 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 4e-11 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 6e-07 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 2e-06 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 8e-05 |
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 1124 bits (2909), Expect = 0.0
Identities = 370/599 (61%), Positives = 470/599 (78%), Gaps = 6/599 (1%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+IG+DLGTTNSCVA+M+G P+V+EN+EG RTTPS++A+ Q GE LVG PAKRQAVTNP
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NTLF KRLIGRRF D + Q+++ ++PFKI+ A NGDAWVE GQ+ +P QI A VL KM
Sbjct: 64 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKM 123
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
K+TAE YLG+ V+EAVITVPAYFNDAQRQATKDAGRIAGL+V+RIINEPTAAAL+YG++
Sbjct: 124 KKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 183
Query: 235 KEG--LIAVFDLGGGTFDVSVLEISN----GVFEVKATNGDTFLGGEDFDNALLEFLVSE 288
G IAV+DLGGGTFD+S++EI FEV ATNGDT LGGEDFD+ L+ +LV E
Sbjct: 184 GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE 243
Query: 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRS 348
FK+ + IDL D LA+QRL+E+AEKAKIELSS QT++NLP+ITADA+G KH+NI +TR+
Sbjct: 244 FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303
Query: 349 KFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK 408
K E+LV L+ R+ P K L+DA +++ D+D+V+LVGG TR+P VQ+ V E FGK P K
Sbjct: 304 KLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRK 363
Query: 409 GVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKS 468
VNPDEAVA+GAA+QGG+L GDVK++LLLDVTPLSLGIET+GG+ T LI +NTTIPTK S
Sbjct: 364 DVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHS 423
Query: 469 QVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGI 528
QVFSTA DNQ+ V I VLQGER+ AADNK+LG+F L GI PAPRG+PQIEVTFDIDA+GI
Sbjct: 424 QVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGI 483
Query: 529 VTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTI 588
+ VSAKDK +GKEQ+ITI++S GL+E EI+KMV++AE +A+ D++ L+ RN D +
Sbjct: 484 LHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLL 543
Query: 589 YSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM 647
+S K + E +K+P + IE A++ L A+ GED I+AK+ + K+ +
Sbjct: 544 HSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 602
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 969 bits (2507), Expect = 0.0
Identities = 333/532 (62%), Positives = 412/532 (77%), Gaps = 27/532 (5%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+IG+DLGTTNSCVAV+EG KVI N EG RTTPSVVAF + GE LVG AKRQA+TNP
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP- 61
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NT+ KR +G + VE G+QY+P +I A +L +
Sbjct: 62 NTIISIKRHMGTDY------------------------KVEIEGKQYTPQEISAIILQYL 97
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
K AE YLG+ V+ AVITVPAYFNDAQRQATKDAGRIAGL+V+RIINEPTAAAL+YG++
Sbjct: 98 KSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDK 157
Query: 235 KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
+E I V+DLGGGTFDVS+LE+ +GVFEVKAT GD LGG+DFD ++++LV++FK+
Sbjct: 158 EEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEH 217
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
IDLS+DK+ALQRL+++AEKAK ELS +QT+I+LPFI+A+ +G HL +TLTR+KFE L
Sbjct: 218 GIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEEL 277
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPD 413
HL+ERT P + L+DA +T D+D+V+LVGG TR+P VQE + GK P KGVNPD
Sbjct: 278 SAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPD 337
Query: 414 EAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFST 473
E VA+GAAIQGG++ G+VK+++LLDVTPLSLGIET+GG+FT+LI RNTTIPT KSQVF+T
Sbjct: 338 EVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTT 397
Query: 474 AADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSA 533
AADNQT V I VLQGER MAADNK+LG F+L GIPPAPRG+PQIEVTFDIDANGIV V A
Sbjct: 398 AADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRA 457
Query: 534 KDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNAD 585
KD T KEQ ITI+SS GLSE EI++M+KEAE +A+ D++RK ++RN AD
Sbjct: 458 KDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 936 bits (2422), Expect = 0.0
Identities = 288/553 (52%), Positives = 391/553 (70%), Gaps = 17/553 (3%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+G+DLGTT SCV V + ++I N +G RTTPS VAF E L+G AK Q NP
Sbjct: 6 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 64
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAP-NGDAWVEANGQ--QYSPSQIGAFVL 171
NT+F KRLIGRRF+DA Q +MK PF +VN VE G+ + P ++ + VL
Sbjct: 65 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 124
Query: 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG 231
TKMKE AE+YLGK+V+ AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA++YG
Sbjct: 125 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 184
Query: 232 MNNKEGL---IAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288
++ K G + +FDLGGGTFDVS+L I+ G+FEVK+T GDT LGGEDFDN ++ ++E
Sbjct: 185 LDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAE 244
Query: 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRS 348
FKR + D+S++K A++RLR + E+AK LSS++Q I + + ++TR+
Sbjct: 245 FKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSITRA 300
Query: 349 KFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKSPS 407
+FE L L T P + L+DA + + +++LVGG TR+PK+Q+++ + F GK +
Sbjct: 301 RFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELN 360
Query: 408 KGVNPDEAVALGAAIQGGILRGD----VKELLLLDVTPLSLGIETLGGIFTRLINRNTTI 463
K +NPDEAVA GAA+Q IL GD V++LLLLDVTPLSLGIET GG+ T LI RNTTI
Sbjct: 361 KSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTI 420
Query: 464 PTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDI 523
PTK++Q F+T +DNQ V I+V +GER M DN LG+FEL GIPPAPRG+PQIEVTFDI
Sbjct: 421 PTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDI 480
Query: 524 DANGIVTVSAKDKATGKEQQITIRSSGG-LSESEIEKMVKEAELHAQRDQERKTLIDIRN 582
DANGI+ VSA DK+TGKE +ITI + G LS+ +IE+MV+EAE + D++++ + +N
Sbjct: 481 DANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKN 540
Query: 583 NADTTIYSIEKSL 595
+ ++ ++++ ++
Sbjct: 541 SLESYAFNMKATV 553
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 843 bits (2179), Expect = 0.0
Identities = 161/654 (24%), Positives = 284/654 (43%), Gaps = 46/654 (7%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
G+DLG NS +AV + ++ N R+TPSVV F K +G K + +N
Sbjct: 4 PFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIK 62
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEAN----GQQYSPSQIGAFV 170
NT+ KR+IG ++ ++E K K+V + E +S +Q+ A
Sbjct: 63 NTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMF 122
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
+ K+K+T + ++++ I VP ++ + QR DA RIAGL+ RI+N+ TAA +SY
Sbjct: 123 IDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSY 182
Query: 231 GMNNKEGL--------IAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282
G+ + +A D+G ++ S++ G +V T D GG DFD A+
Sbjct: 183 GIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAIT 242
Query: 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLN 342
E EFK +ID+ ++ A R+ +AEK K LS+ + PF ++
Sbjct: 243 EHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNA----PFSVESVMNDVDVS 298
Query: 343 ITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF 402
L+R + E LV L+ER P L A ++ ++VD V ++GG TR+P +++ ++E F
Sbjct: 299 SQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF 358
Query: 403 GKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTPLSLGIETLGGI----FTRL 456
GK S +N DEA+A GAA I V+ D+ P S+ + +
Sbjct: 359 GKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEV 418
Query: 457 INRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGI--PPAPRGI 514
++ P+ K + D + + + +E+ G+ P +
Sbjct: 419 FPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSV 476
Query: 515 PQIEVTFDIDANGIVTVS----------AKDKATGKEQQITIR-SSGGLSESEIEKMVKE 563
P +++ D +G+ T+ D T K+ +TI + GL ++ +++++
Sbjct: 477 P-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEK 535
Query: 564 AELHAQRDQERKTLIDIRNNADTTIYSIEKSL-GEYREKIPGEVAKEIEDAVSDLRKAMA 622
+D+ D +N + IY++ L EY +++ ++ + +
Sbjct: 536 ENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLY 595
Query: 623 GEDIDGIKAKLDAANKAVSKIGQ------HMAGGSSDNSASGGSQGGDQAPEAE 670
E D IKAK A + ++ +G + + A AE
Sbjct: 596 DEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAE 649
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 753 bits (1946), Expect = 0.0
Identities = 245/379 (64%), Positives = 306/379 (80%), Gaps = 6/379 (1%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+IG+DLGTTNSCVA+M+G P+V+EN+EG RTTPS++A+ Q GE LVG PAKRQAVTNP
Sbjct: 4 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 63
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NTLF KRLIGRRF D + Q+++ ++PFKI+ A NGDAWVE GQ+ +P QI A VL KM
Sbjct: 64 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKM 123
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
K+TAE YLG+ V+EAVITVPAYFNDAQRQATKDAGRIAGL+V+RIINEPTAAAL+YG++
Sbjct: 124 KKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 183
Query: 235 KEG--LIAVFDLGGGTFDVSVLEIS----NGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288
G IAV+DLGGGTFD+S++EI FEV ATNGDT LGGEDFD+ L+ +LV E
Sbjct: 184 GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE 243
Query: 289 FKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRS 348
FK+ + IDL D LA+QRL+E+AEKAKIELSS QT++NLP+ITADA+G KH+NI +TR+
Sbjct: 244 FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRA 303
Query: 349 KFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK 408
K E+LV L+ R+ K L+DA +++ D+D+V+LVGG TR+P VQ+ V E FGK P K
Sbjct: 304 KLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRK 363
Query: 409 GVNPDEAVALGAAIQGGIL 427
VNPDEAVA+GAA+QGG+L
Sbjct: 364 DVNPDEAVAIGAAVQGGVL 382
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 625 bits (1614), Expect = 0.0
Identities = 192/385 (49%), Positives = 253/385 (65%), Gaps = 14/385 (3%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
IG+DLGTT SCV V + ++I N +G RTTPS VAF E L+G AK Q NP
Sbjct: 25 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 83
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVN-APNGDAWVEANGQ--QYSPSQIGAFVL 171
NT+F KRLIGR+F DA Q +MK PF++V+ VE G+ + P +I + VL
Sbjct: 84 NTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVL 143
Query: 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG 231
TKMKE AE+YLG V AVITVPAYFND+QRQATKDAG I GL+V RIINEPTAAA++YG
Sbjct: 144 TKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYG 203
Query: 232 MNNKEGL-----IAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLV 286
++ K + +FDLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDN ++ L
Sbjct: 204 LDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLA 263
Query: 287 SEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLT 346
EFKR + D+ +K A++RLR + E+AK LSS++Q I + + ++T
Sbjct: 264 EEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGV----DFYTSIT 319
Query: 347 RSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKS 405
R++FE L L T P + L+DA + + E++LVGG TR+PK+Q+++ + F GK
Sbjct: 320 RARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKE 379
Query: 406 PSKGVNPDEAVALGAAIQGGILRGD 430
+K +NPDEAVA GAA+Q IL GD
Sbjct: 380 LNKSINPDEAVAYGAAVQAAILIGD 404
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 381 bits (982), Expect = e-130
Identities = 120/214 (56%), Positives = 159/214 (74%)
Query: 434 LLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMA 493
+LLLDVTPLSLGIET+GG+ T LI +NTTIPTK SQVFSTA DNQ+ V I VLQGER+ A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 494 ADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLS 553
ADNK+LG+F L GI PAPRG+PQIEVTFDIDA+GI+ VSAKDK +GKEQ+ITI++S GL+
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 554 ESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDA 613
E EI+KMV++AE +A+ D++ + L+ RN D ++S K + E +K+P + IE A
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 614 VSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHM 647
++ L A+ GED I+AK+ + K+ +
Sbjct: 181 LTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 214
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 354 bits (911), Expect = e-120
Identities = 116/173 (67%), Positives = 136/173 (78%)
Query: 423 QGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVG 482
G L + +DVTPLSLGIETLGG+FT+LINRNTTIPTKKSQVFSTAAD QTQV
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 483 IKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQ 542
IKV QGEREMA DNK LG+F L+GIPPAPRG+PQIEVTFDIDANGIV VSAKDK TG+EQ
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 543 QITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSL 595
QI I+SSGGLS+ +IE MVK AE +A+ D+ +K ++ N A+ I+ E +
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKM 181
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 353 bits (909), Expect = e-119
Identities = 80/224 (35%), Positives = 130/224 (58%)
Query: 437 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADN 496
+DV PLSLG+ET+GG+ ++I RNTTIP ++Q F+T D QT + I V+QGERE+ D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 497 KALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESE 556
++L F L GIP P G I VTF +DA+G+++V+A +K+TG E I ++ S GL++SE
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 557 IEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSD 616
I M+K++ +A++D + + L + + A + S+ +L + + I+DA +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 617 LRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASGGS 660
L + G+D+D I+ + +K S + G S
Sbjct: 181 LSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHS 224
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 302 bits (776), Expect = e-100
Identities = 110/148 (74%), Positives = 127/148 (85%)
Query: 438 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNK 497
DVTPLSLGIETLGGI T+LI RNTTIPTKKSQVFSTAAD QTQV IKV QGEREMA NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 498 ALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEI 557
LG+F L+GIPPAPRG+PQ+EVTFDIDANGIV VSA+D+ TGKEQQI I+SSGGLS+ +I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 558 EKMVKEAELHAQRDQERKTLIDIRNNAD 585
E M+KEAE +A D +RK L+++ N A+
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 1e-90
Identities = 84/149 (56%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 438 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNK 497
DV PL+LGIET+GG+ T+LI RNT IPTKKSQVFSTAAD+Q+ V I + +GER M DN
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 498 ALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG-LSESE 556
LG F++ GIPPAPRG+PQIEVTF+ID NGI+ VSA+DK TG + ++TI + LS +
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 557 IEKMVKEAELHAQRDQERKTLIDIRNNAD 585
IE+M+ +A+ A DQ +K ++ RN +
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 3e-89
Identities = 90/149 (60%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Query: 438 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNK 497
DV L+LGIET GG+ T LI RNT IPTKKSQ+FSTA DNQ V IKV +GER M+ DN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 498 ALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG-LSESE 556
LG+FEL GIPPAPRG+PQIEVTF +DANGI+ VSA DK TGK + ITI + G L++ E
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 557 IEKMVKEAELHAQRDQERKTLIDIRNNAD 585
I++MV+EAE A D K ++ RN +
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 273 bits (701), Expect = 4e-89
Identities = 86/149 (57%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 438 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNK 497
DV PLSLGIET GG+ T LI+RNT IPTK + F+T ADNQ V I+V +GER M DN
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 498 ALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG-LSESE 556
LG FEL GIPPAPRG+PQIEVTF+IDANGI+ VSA+DK+TGK +ITI++ G L++S+
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 557 IEKMVKEAELHAQRDQERKTLIDIRNNAD 585
I++MV EA+ + D E++ + RN +
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 267 bits (685), Expect = 5e-87
Identities = 87/135 (64%), Positives = 107/135 (79%)
Query: 418 LGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADN 477
+G++ + ++DVTPLSLGIET+GG+ T LI +NTTIPTK SQVFSTA DN
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 478 QTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKA 537
Q+ V I VLQGER+ AADNK+LG+F L GI PAPRG+PQIEVTFDIDA+GI+ VSAKDK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 538 TGKEQQITIRSSGGL 552
+GKEQ+ITI++S GL
Sbjct: 121 SGKEQKITIKASSGL 135
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-35
Identities = 63/374 (16%), Positives = 107/374 (28%), Gaps = 112/374 (29%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGE--LLVGTPAKRQAVTNP 113
+ L N + + P V + +LV T + V
Sbjct: 6 LEQKLNLLNDLIV----REIVNPLP------PPYKVGVDLGTADIVLVVTDQEGIPV--A 53
Query: 114 ANTLFGTKRLIGRRFNDAQTQKEMK---MVPFKIVNAPNGDAWVEANGQQYSPSQIGAFV 170
+ +K +V + +
Sbjct: 54 GAL---------------KWASVVKDGLVVDYIGAIQ----------------------I 76
Query: 171 LTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230
+ ++K E LG + +A +P +A AGL++ +++EP AAA +
Sbjct: 77 VRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARAL 136
Query: 231 GMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290
G+N+ V D+GGGT ++V+E D GG L F
Sbjct: 137 GINDG----IVVDIGGGTTGIAVIEKGKITAT-----FDEPTGGTHLSLVLAGSYKIPF- 186
Query: 291 RTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKF 350
E AE K + S +
Sbjct: 187 ------------------EEAETIKKDFSRHREIM------------------------- 203
Query: 351 ETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGV 410
+V +IE+ K +K+ + T V +VGG + E + GK +
Sbjct: 204 -RVVRPVIEKMALIVKEVIKNYDQT----LPVYVVGGTAYLTGFSEEFSRFLGKEVQVPI 258
Query: 411 NPDEAVALGAAIQG 424
+P LG A+ G
Sbjct: 259 HPLLVTPLGIALFG 272
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 46/373 (12%), Positives = 111/373 (29%), Gaps = 60/373 (16%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPAN 115
+ +D G+TN + E + S +F ++ + G N
Sbjct: 3 VFIDDGSTNIKLQWQESDGT--------IKQHISPNSFKREWAVSFGDKKVFNYTLN--- 51
Query: 116 TLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMK 175
G + DA + + A + + S++ +
Sbjct: 52 ---GEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSG---LPVSEVDIVCTLPLT 105
Query: 176 ETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN-N 234
E Y ++ + + +++ T + G + +++ E A +
Sbjct: 106 E----YYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD 161
Query: 235 KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTER 294
+ + + DLGG T D+S + + + GD+ LG +A+ + L +
Sbjct: 162 ELDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS- 218
Query: 295 IDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLV 354
LA + + ++ + +I++ +
Sbjct: 219 -----SYLADDIIIHRKDNNYLKQRINDENKISI---------------------VTEAM 252
Query: 355 NHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGV---N 411
N + + + N L + V+++GG + + + V + + N
Sbjct: 253 NEALRKLEQRVLNTLNEF----SGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNN 306
Query: 412 PDEAVALGAAIQG 424
+ G + G
Sbjct: 307 SQYDLVNGMYLIG 319
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 97.5 bits (242), Expect = 3e-22
Identities = 62/387 (16%), Positives = 117/387 (30%), Gaps = 94/387 (24%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
V+G+D+G ++ KVI PS A + +G +
Sbjct: 23 VVGLDVGYGDT----------KVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGG- 71
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
TK + G+ A + V + + + + +
Sbjct: 72 ----QTKFIYGKY-------------------ASGNNIRVPQGDGRLASKEAFPLIAAAL 108
Query: 175 KETAESYLGKSVSEAVIT-VPAYFNDAQRQATKDA------------GRIAGLDVQRIIN 221
E+ G V + + P D + +A K+A G + ++ R+I
Sbjct: 109 WESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIM 168
Query: 222 EPTAAALSYGM------NNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGE 275
P + + + G V D+G T DV + + + V + +G
Sbjct: 169 RPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVG 227
Query: 276 DFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADA 335
D +AL + E DL+Q+ A +
Sbjct: 228 DAISALSRKIAKETGFVVPFDLAQE----------ALSHPVMFRQ--------------- 262
Query: 336 SGAKHLNIT-LTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKV 394
K + ++ E L N +IE + + + V ++ VGG + + +
Sbjct: 263 ---KQVGGPEVSGPILEDLANRIIENIRLNLRG-------EVDRVTSLIPVGGGSNL--I 310
Query: 395 QEIVTEIFGKSPSKGV--NPDEAVALG 419
+ EI + K + A ALG
Sbjct: 311 GDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 94.9 bits (235), Expect = 3e-20
Identities = 88/574 (15%), Positives = 174/574 (30%), Gaps = 194/574 (33%)
Query: 133 TQKEMKMVPFKIVNAPNGDA------WV-EANGQQYSPSQIGAFVLTKMKET----AESY 181
+++E+ I+ + + + W + ++ + FV ++
Sbjct: 47 SKEEID----HIIMSKDAVSGTLRLFWTLLSKQEE----MVQKFVEEVLRINYKFLMSPI 98
Query: 182 LGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRI--INEPTAAALS---------Y 230
+ +++T + + + + D A +V R+ + A L
Sbjct: 99 KTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 231 GMNNKEGLIAVFDLGGGTFDVSVL------------EISNGVFEVKATNGDTFLGGEDFD 278
G+ LG G + + ++ +F + L +
Sbjct: 157 GV-----------LGSGK---TWVALDVCLSYKVQCKMDFKIFWLN-------LKNCNSP 195
Query: 279 NALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGA 338
+LE LQ+L + S S N+
Sbjct: 196 ETVLE-------------------MLQKLLYQIDPNWTSRSDHSS---NIK--------- 224
Query: 339 KHLNITLTRSKFETLVNHLIERTKAPCKNCL------KDANITIKDVD---EVLLVGGMT 389
L I +++ L L + P +NCL ++A + ++LL T
Sbjct: 225 --LRIHSIQAELRRL---LKSK---PYENCLLVLLNVQNAKA-WNAFNLSCKILLT---T 272
Query: 390 RVPKVQEIV-----TEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKEL--LLLDVTPL 442
R +V + + T I S + PDE +L L ++L +L P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPR 328
Query: 443 SLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEF 502
L I I + + T K V + + VL+ A+ + + F
Sbjct: 329 RLSI-----IAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLE-----PAEYRKM--F 375
Query: 503 ELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIR--SS--GGLSESEIE 558
+ + + F A+ I S + +S++
Sbjct: 376 DRLSV-------------FPPSAH-----------------IPTILLSLIWFDVIKSDVM 405
Query: 559 KMVKEAELHAQRDQERKTLIDIRNNADT-TIYSIEKSLGEYREKIPGEVA--KEIEDAVS 615
+V +LH + +L++ + T +I SI E + K+ E A + I D +
Sbjct: 406 VVVN--KLH------KYSLVEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYN 454
Query: 616 DLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649
+ + D I LD S IG H+
Sbjct: 455 IPKTF---DSDDLIPPYLD--QYFYSHIGHHLKN 483
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 55/383 (14%), Positives = 101/383 (26%), Gaps = 137/383 (35%)
Query: 47 SARPAGNDVI-GVDLGTTNSCVAVMEGKNPKVIENSE--------GTRTTPSVVAFNQKG 97
RPA N +I GV LG+ + VA+ + KV + +P V +
Sbjct: 146 ELRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 98 ELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQKEMKMV--PFK----IVNAPNGD 151
L P + +N I R + Q + + P++ ++ +
Sbjct: 205 LLYQIDPNWTSRSDHSSN--------IKLRIHSIQAELRRLLKSKPYENCLLVLL----N 252
Query: 152 AWVEANGQQYSPSQIGAFVLT-KMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210
+ AF L+ K+ ++T T+
Sbjct: 253 VQ--------NAKAWNAFNLSCKI---------------LLT------------TRFKQV 277
Query: 211 IAGLDVQRIINEPTAAALSYGMNNKE--GLIAVFDLGGGTFDVSVLEISNGVFEVKATNG 268
L + S + E L+ + D ++ EV T
Sbjct: 278 TDFLSAATTT-HISLDHHSMTLTPDEVKSLLLKY------LDCRPQDLPR---EVLTT-- 325
Query: 269 DTFLGGEDFDNALLEFLVSEFKR--TERID----LSQDKLALQRLRESAEKAKIELSSTS 322
N +++E R D ++ DKL IE S
Sbjct: 326 ----------NPRRLSIIAESIRDGLATWDNWKHVNCDKL----------TTIIESS--- 362
Query: 323 QTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEV 382
+N L R F+ L + A+I + +
Sbjct: 363 ---LN------------VLEPAEYRKMFDRLS---VFP---------PSAHIPTI-LLSL 394
Query: 383 LLVGGMTRVPKVQEIVTEIFGKS 405
+ + +V ++ S
Sbjct: 395 IWFDVIKSDV--MVVVNKLHKYS 415
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 2e-13
Identities = 40/314 (12%), Positives = 94/314 (29%), Gaps = 67/314 (21%)
Query: 136 EMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESY-------LGKSVSE 188
++ + ++ +E +G++Y + G ++ +T + + + +
Sbjct: 41 KIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETSKTNLIHKLAAYTAITQVLDS 100
Query: 189 A-------VITVPA--YFNDAQRQATKDA------------GRIAGLDVQRIIN--EPTA 225
V+ P N ++ +D + ++ I E +
Sbjct: 101 NKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSG 160
Query: 226 AALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFL 285
N K +AV D GG S+ N V + G +D + +
Sbjct: 161 VLFLEQENFKNKNVAVIDFGGLNMGFSL--YRNCVVNPSERFIEE-HGVKDLIIRVGD-- 215
Query: 286 VSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITL 345
+L ++ A L K E+ + S T I
Sbjct: 216 --ALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVI------------------- 254
Query: 346 TRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKS 405
+ E + I+ ++ + +D ++ +GG T+ ++E +++ + +
Sbjct: 255 -KKVKEKFLKDAIKL--------IEKRGFKLDQLDSLIFIGGTTQK--LKEQISKTYPNN 303
Query: 406 PSKGVNPDEAVALG 419
N G
Sbjct: 304 SIITNNSQWTTCEG 317
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 53/394 (13%), Positives = 106/394 (26%), Gaps = 83/394 (21%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
V+ +D G V VI PS + R+ N
Sbjct: 6 VMALDFGNGF--VKGKINDEKFVI---------PSRIG--------------RKTNENNQ 40
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
F +L F E+ + + N + +Y V +
Sbjct: 41 LKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDLVECSI 100
Query: 175 KETAESYLGKSVSEAVIT---VPAYFNDAQRQATKDAGRIAGLDVQ-----------RII 220
A + V+ + T D Q + K + +++ +I+
Sbjct: 101 GLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIV 160
Query: 221 NEPTAAALSYGMNN-------KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLG 273
+P L M N EG +V D G GT + N V+ + G
Sbjct: 161 AQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR-VEEESFVINKG 217
Query: 274 GEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITA 333
DF + + + + +K + + +K I+ E
Sbjct: 218 TIDFYKRIASHVSKKSEGASITPRMIEKGLEYKQCKLNQKTVIDFKDEFYKEQ------- 270
Query: 334 DASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPK 393
++L+ ++ + I +D +++ GG +
Sbjct: 271 -----------------DSLIEEVMSN--------FEITVGNINSIDRIIVTGGGANI-- 303
Query: 394 VQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427
+ ++ + K + + G G +L
Sbjct: 304 HFDSLSHYYSDVFEKADDSQFSNVRGYEKLGELL 337
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 6e-07
Identities = 61/397 (15%), Positives = 128/397 (32%), Gaps = 66/397 (16%)
Query: 39 WASLARPFSARPAGNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPS-------VV 91
+ SL++ F R + +G+++G + + + G P + + +R TP V
Sbjct: 2 FKSLSQLFRPR---VEALGLEIGASALKLVEVSGNPPAL--KALASRPTPPGLLMEGMVA 56
Query: 92 AFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ-TQKEMKMVPFKIVNAPNG 150
+ + + + T +I R + KEM+
Sbjct: 57 EPAALAQEIKELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEA---------- 106
Query: 151 DAWVEANGQQYSPSQIGAFVL--TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDA 208
V ++Y P I VL + +E G+ V V +A +
Sbjct: 107 ---VRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRG- 162
Query: 209 GRIAGLDVQRIINEPTAAALSYGMN---NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKA 265
AGL + +P A + + V D+G + + +L +
Sbjct: 163 ---AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA---- 215
Query: 266 TNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTE 325
L G+DF A+ + +AE+ K +
Sbjct: 216 -VRVLTLSGKDFTEAIARSFNLDL-------------------LAAEEVKRTYGMATLPT 255
Query: 326 INLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKD--VDEVL 383
+ + + + + ++ L + + L+ I +++ +
Sbjct: 256 EDEELLLDFDAERERYSPGRIYDAIRPVLVELTQE----LRRSLEFFRIQLEEASPEVGY 311
Query: 384 LVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGA 420
L+GG +++ + ++T+ G + VNP EAVA+
Sbjct: 312 LLGGGSKLRGLASLLTDTLGV-NLEPVNPWEAVAVDP 347
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Length = 120 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-06
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 564 AELHAQRDQERKTLIDIRNNADTTIYSIEKSLGE--YREKIPGEVAKEIEDAVSDLRKAM 621
+ H ++ +++++++ + ++KI E K+IED ++ K +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 622 AG---EDIDGIKAKLDAANKAVSKIGQHM---AGGSSDNSASGGSQGGDQAPEAEYEEV 674
+ + + + + I + AGG+ +A GG+ GG P EEV
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGGAGGPTI--EEV 119
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKEL 434
+ +LL+GG + ++ + I G DE VA+GAA Q + E
Sbjct: 424 SITRILLIGGGAKSEAIRTLAPSILGM-DVTRPATDEYVAIGAARQAAWVLSGETEP 479
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 676 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 100.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 100.0 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.98 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.98 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.97 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.96 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.95 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.95 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.95 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.94 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.93 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.93 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.91 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.88 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.8 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.79 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.72 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.59 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.58 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.53 | |
| 3lof_A | 113 | Heat shock 70 kDa protein 1; structural genomics, | 99.52 | |
| 2p32_A | 120 | Heat shock 70 kDa protein A; three-helix bundle, c | 99.48 | |
| 1ud0_A | 113 | HSC70, 70 kDa heat-shock-like protein; chaperone; | 99.34 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.26 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.24 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 99.23 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.82 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 98.59 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 98.44 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 98.38 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 98.3 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 98.26 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 98.22 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 98.2 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 98.04 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 97.66 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 97.38 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 96.75 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 96.72 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 96.62 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 96.59 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 96.57 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 96.5 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 96.48 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 96.41 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 96.35 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 96.33 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 96.16 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 96.15 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 96.12 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 95.98 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 95.88 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 95.8 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 95.75 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 95.73 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 95.7 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 95.49 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 95.18 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 95.04 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 94.01 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 93.94 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 93.9 | |
| 3zyy_X | 631 | Iron-sulfur cluster binding protein; iron-sulfur-b | 93.86 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 93.34 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 92.39 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 90.71 | |
| 2yhx_A | 457 | Hexokinase B; transferase(phosphoryl,alcohol accep | 89.91 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 89.88 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 88.28 | |
| 3o8m_A | 485 | Hexokinase; rnaseh-like fold, glycolysis, glucose | 85.12 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 84.43 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 84.02 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-111 Score=951.77 Aligned_cols=597 Identities=61% Similarity=0.967 Sum_probs=578.4
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||+||++.+|.++++.|..|++++||+|+|+++++++||..|+.+...+|.++++++||+||+.++++.
T Consensus 2 ~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred CcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 46999999999999999999999999999999999999999878899999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.++...+|.+.+..+++.++|+++++++|++|++.++.+++.++.++|||||+||++.||++|++|++.|
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~A 161 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 161 (605)
T ss_dssp HHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCC-C-eEEEEeeCCceeEEEEEEEeC----CeEEEEEecCCCCcchHHHHHHHHHHHH
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKE-G-LIAVFDLGGGTFDVSVLEISN----GVFEVKATNGDTFLGGEDFDNALLEFLV 286 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~-~-~vlV~D~GgGT~Dvsv~~~~~----~~~~v~~~~g~~~lGG~~~D~~l~~~l~ 286 (676)
||+++++++||+|||++|+..... + +++|||+||||||++++++.+ +.++++++.++.++||.+||..|++|+.
T Consensus 162 Gl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~ 241 (605)
T 4b9q_A 162 GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241 (605)
T ss_dssp TCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred CCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 999999999999999999987643 3 999999999999999999998 9999999999999999999999999999
Q ss_pred HHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHH
Q 005807 287 SEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCK 366 (676)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~ 366 (676)
++|+++++.++..+++++.+|+.+||++|+.||......+.++++..+..++.++.+.|||++|+++++|+++++..+|+
T Consensus 242 ~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~ 321 (605)
T 4b9q_A 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLK 321 (605)
T ss_dssp HHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887766778899999999999999999999999999
Q ss_pred HHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccce
Q 005807 367 NCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGI 446 (676)
Q Consensus 367 ~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi 446 (676)
++|+++++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++..+++++.|++|+|||+
T Consensus 322 ~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~~~~~l~dv~p~slgi 401 (605)
T 4b9q_A 322 VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGI 401 (605)
T ss_dssp HHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSSCSEEEECBCSSCEEE
T ss_pred HHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCCCceEEEeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCC
Q 005807 447 ETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDAN 526 (676)
Q Consensus 447 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~ 526 (676)
++.+|.|.+|||||++||++++++|++..|||+.+.|+|||||+.++.+|+.||+|.|.++||.|+|.++|+|+|++|.|
T Consensus 402 e~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 481 (605)
T 4b9q_A 402 ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDAD 481 (605)
T ss_dssp EETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTT
T ss_pred EEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHH
Q 005807 527 GIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEV 606 (676)
Q Consensus 527 g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~ 606 (676)
|+|+|++.++.||++.+++|.+..+||++||++|++++++++++|++.+++.++||++|+|+|++++.|+++.+++++++
T Consensus 482 gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~~~~~ 561 (605)
T 4b9q_A 482 GILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEEAGDKLPADD 561 (605)
T ss_dssp SCEEEEEEETTTCCEECCEEESCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred cEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 99999999999999999999988899999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 607 AKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 607 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
|+++.+.++++++||++++.+++++++++|++.+.++++++|+
T Consensus 562 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 562 KTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999986
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-108 Score=928.42 Aligned_cols=597 Identities=62% Similarity=0.969 Sum_probs=571.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||+||++.+|.++++.|+.|++++||+|+|+++++++||+.|+.+...+|.++++++||+||+.++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~ 81 (605)
T 2kho_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp --CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred CCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence 35899999999999999999999999999999999999999878899999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.++.+.+|.+.+..+++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|++.|
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~A 161 (605)
T 2kho_A 82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 161 (605)
T ss_dssp HHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999988888988888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCC-C-CeEEEEeeCCceeEEEEEEEe----CCeEEEEEecCCCCcchHHHHHHHHHHHH
Q 005807 213 GLDVQRIINEPTAAALSYGMNNK-E-GLIAVFDLGGGTFDVSVLEIS----NGVFEVKATNGDTFLGGEDFDNALLEFLV 286 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~-~-~~vlV~D~GgGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~ 286 (676)
||+++++++||+|||++|+.+.. . .++||||+||||||+|++++. ++.++++++.|+.++||++||+.|++|+.
T Consensus 162 Gl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~ 241 (605)
T 2kho_A 162 GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241 (605)
T ss_dssp TCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHH
T ss_pred CCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999998864 3 399999999999999999998 78999999999999999999999999999
Q ss_pred HHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHH
Q 005807 287 SEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCK 366 (676)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~ 366 (676)
++|+++++.++..+++++.+|+.+||++|+.||......+.++.+..+.+|+.++.+.|||++|+++++|+++++..+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 321 (605)
T 2kho_A 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLK 321 (605)
T ss_dssp HHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999888766544446778899999999999999999999999
Q ss_pred HHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccce
Q 005807 367 NCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGI 446 (676)
Q Consensus 367 ~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi 446 (676)
++|+++++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++.++++++.|++|++||+
T Consensus 322 ~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~~~~~l~dv~p~slgi 401 (605)
T 2kho_A 322 VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGI 401 (605)
T ss_dssp HHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSCCCCCCSBCCCCCEEE
T ss_pred HHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCccCceEEeeeeeeccc
Confidence 99999999989999999999999999999999999998888999999999999999999999988899999999999999
Q ss_pred eeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCC
Q 005807 447 ETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDAN 526 (676)
Q Consensus 447 ~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~ 526 (676)
++.+|.|.+||+||++||++++++|++..|+|+.+.|+|||||+.++.+|+.||+|.|.++||.|+|.++|+|+|++|.|
T Consensus 402 ~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 481 (605)
T 2kho_A 402 ETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDAD 481 (605)
T ss_dssp EETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEECTT
T ss_pred cccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHH
Q 005807 527 GIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEV 606 (676)
Q Consensus 527 g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~ 606 (676)
|+|+|++.|+.||++.+++|+...+||++||++|++++++++++|++++++.+++|++|+|+|++++.|+++.+++++++
T Consensus 482 gil~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~ 561 (605)
T 2kho_A 482 GILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADD 561 (605)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTSSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred CceeEEEEEcCCCceeecccccccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 607 AKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 607 ~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
|+++.+.++++++||++++.+++++++++|++.+.++..++|+
T Consensus 562 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 562 KTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999989999999999999999999999986
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-103 Score=892.94 Aligned_cols=589 Identities=26% Similarity=0.426 Sum_probs=547.5
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
+.+||||||||||+||++.+|+++++.|+.|++.+||+|+|.+ ++++||..|+.++..+|.++++++||+||+.++++.
T Consensus 2 m~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 80 (675)
T 3d2f_A 2 STPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGP-KNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD 80 (675)
T ss_dssp CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECS-SSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred CcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECC-CcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHH
Confidence 4599999999999999999999999999999999999999964 579999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEe--CC--eeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEA--NG--QQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDA 208 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~--~~--~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~A 208 (676)
++...+++||.+++..+|.+.+.. .+ +.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 81 v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 160 (675)
T 3d2f_A 81 FEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADA 160 (675)
T ss_dssp HHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 999999999999988888877653 33 67999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEeeChhHHHHHhccccC-------CCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 005807 209 GRIAGLDVQRIINEPTAAALSYGMNN-------KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNA 280 (676)
Q Consensus 209 a~~AGl~~~~li~Ep~AAal~y~~~~-------~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~ 280 (676)
++.|||+++++++||+|||++|+..+ ..+ ++||||+||||||+|++++.++.++++++.|+.++||++||+.
T Consensus 161 a~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~ 240 (675)
T 3d2f_A 161 ARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLA 240 (675)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHH
T ss_pred HHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHH
Confidence 99999999999999999999998754 223 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHH
Q 005807 281 LLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIER 360 (676)
Q Consensus 281 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~ 360 (676)
|++|+..+|+++++.++..+++++.+|+.+||++|+.||......+.++.+..+ .++.+.|||++|++++.|++++
T Consensus 241 l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g----~~~~~~itr~~fe~l~~~l~~~ 316 (675)
T 3d2f_A 241 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMND----VDVSSQLSREELEELVKPLLER 316 (675)
T ss_dssp HHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSS----CCEEEEEEHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccC----ceEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888888876554 6788999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC--CceeEEEe
Q 005807 361 TKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLD 438 (676)
Q Consensus 361 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~--~~~~~~~d 438 (676)
+..+|+++|+++++++.+|+.|+||||+|++|+|++.|++.||.++..+.||++|||+|||++|+.+++. ++++.+.|
T Consensus 317 i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~~~l~D 396 (675)
T 3d2f_A 317 VTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFED 396 (675)
T ss_dssp TTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCCCCEEEE
T ss_pred HHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCcccceEEEe
Confidence 9999999999999999999999999999999999999999999888899999999999999999999985 67899999
Q ss_pred ecccccceeeeCCe----EEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccc-cccceeEEEEcCCCCCCCC
Q 005807 439 VTPLSLGIETLGGI----FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAA-DNKALGEFELMGIPPAPRG 513 (676)
Q Consensus 439 ~~~~s~gi~~~~~~----~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~-~~~~lg~~~l~~~~~~~~g 513 (676)
++|+||||++.++. |.+|||||++||++++++|++..|+| +.+. |+|++.++. +|..||+|.|.|+||.++|
T Consensus 397 v~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g 473 (675)
T 3d2f_A 397 IHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQ 473 (675)
T ss_dssp EECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSC
T ss_pred eeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCCCCC
Confidence 99999999998874 99999999999999999999886643 3332 779998887 9999999999999999999
Q ss_pred CC-eeEEEEEEcCCccEEEEEE----------ecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 005807 514 IP-QIEVTFDIDANGIVTVSAK----------DKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIR 581 (676)
Q Consensus 514 ~~-~i~v~f~~d~~g~l~v~~~----------~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ 581 (676)
.+ +|+|+|++|.||+|+|++. ++.||++..++|+.. .+||++||++|+++++++.++|++++++.+++
T Consensus 474 ~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~~~ 553 (675)
T 3d2f_A 474 DSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRK 553 (675)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 74 9999999999999999995 789999999999875 48999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-hhcCCCHHHHHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 582 NNADTTIYSIEKSLGE-YREKIPGEVAKEIEDAVSDLRKAMAGED----IDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 582 n~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~wl~~~~----~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
|+||+|+|++++.|++ +.+++++++++++.+.|+++++||++++ .++|++++++|++.+.+|..+++.
T Consensus 554 n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~~~~~~~l~~~~~~i~~r~~e 626 (675)
T 3d2f_A 554 NTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLA 626 (675)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999964 7889999999999999999999998653 788999999999999999988763
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-97 Score=832.18 Aligned_cols=538 Identities=53% Similarity=0.858 Sum_probs=506.6
Q ss_pred CCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCH
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDA 131 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~ 131 (676)
++.+||||||||||+||++.+|.++++.|+.|++++||+|+|++ ++++||+.|+.++..+|.++++++|||||+.++|+
T Consensus 3 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 81 (554)
T 1yuw_A 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDA 81 (554)
T ss_dssp SCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECS-SCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCS
T ss_pred CCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcC-CcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcH
Confidence 45699999999999999999999999999999999999999964 57899999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEeCCCCCeEEE--eC--CeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHH
Q 005807 132 QTQKEMKMVPFKIVNAPNGDAWVE--AN--GQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKD 207 (676)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~v~--~~--~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~ 207 (676)
.++..++.+||.++. .+|.+.+. .. .+.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 82 ~v~~~~~~~p~~v~~-~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~ 160 (554)
T 1yuw_A 82 VVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKD 160 (554)
T ss_dssp HHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEe-cCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 999999999999985 36666544 23 37899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeeChhHHHHHhccccCC--C-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHH
Q 005807 208 AGRIAGLDVQRIINEPTAAALSYGMNNK--E-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEF 284 (676)
Q Consensus 208 Aa~~AGl~~~~li~Ep~AAal~y~~~~~--~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~ 284 (676)
|++.|||+++++++||+|||++|+..+. . ..++|||+||||||++++++.++.++++++.++.++||++||+.|++|
T Consensus 161 A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~ 240 (554)
T 1yuw_A 161 AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNH 240 (554)
T ss_dssp HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999998764 2 389999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHH
Q 005807 285 LVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAP 364 (676)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~ 364 (676)
+.++|+++++.++..+++++.+|+.+||++|+.||......+.++.+..+ .++...|+|++|+++++|+++++...
T Consensus 241 l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g----~~~~~~ltr~~~e~l~~~~~~~i~~~ 316 (554)
T 1yuw_A 241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDP 316 (554)
T ss_dssp HHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSS----CCEEEEEEHHHHHHHTHHHHHHTTHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCC----ceEEEEEEHHHHHHHHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999888888876554 67889999999999999999999999
Q ss_pred HHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC-CCCCCCCCcchhHhhHHHHHhhhccCC----CceeEEEee
Q 005807 365 CKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG-KSPSKGVNPDEAVALGAAIQGGILRGD----VKELLLLDV 439 (676)
Q Consensus 365 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~~~----~~~~~~~d~ 439 (676)
|+++|+++++.+.+|+.|+||||+|++|+|++.|++.|+ .++..+.||++|||+|||++|+.+++. .+++.+.|+
T Consensus 317 i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv 396 (554)
T 1yuw_A 317 VEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDV 396 (554)
T ss_dssp HHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCB
T ss_pred HHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEe
Confidence 999999999998999999999999999999999999996 778889999999999999999999874 578999999
Q ss_pred cccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEE
Q 005807 440 TPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEV 519 (676)
Q Consensus 440 ~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v 519 (676)
+|+|||+++.+|.|.++|+||++||++++++|++..|+|+.+.|.|||||+..+.+|..||+|.|.++||.|+|.++|+|
T Consensus 397 ~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v 476 (554)
T 1yuw_A 397 TPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 476 (554)
T ss_dssp CSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEE
T ss_pred eeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005807 520 TFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSL 595 (676)
Q Consensus 520 ~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l 595 (676)
+|++|.||+|+|++.|+.||++.+++|... .+||++||++|++++++++++|++++++.++||++|+|+|++++.|
T Consensus 477 ~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 477 TFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp EEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred EEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999876 6699999999999999999999999999999999999999887654
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-91 Score=775.30 Aligned_cols=507 Identities=66% Similarity=1.026 Sum_probs=475.5
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.+|.|+++.|+.|++++||+|+| .+++++||+.|+.+...+| ++++++||+||+++.
T Consensus 2 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~--- 76 (509)
T 2v7y_A 2 SKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK--- 76 (509)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC---
T ss_pred CCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE---
Confidence 35999999999999999999999999999999999999999 5778999999999999999 999999999998442
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
+..+++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++|++.|
T Consensus 77 ---------------------~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~A 135 (509)
T 2v7y_A 77 ---------------------VEIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIA 135 (509)
T ss_dssp ---------------------EEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred ---------------------EEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 12355689999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhh
Q 005807 213 GLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKR 291 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 291 (676)
|++++++++||+|||++|+.....+ ++||||+||||||++++++.++.++++++.++.++||.+||+.|++|+.++|++
T Consensus 136 Gl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~ 215 (509)
T 2v7y_A 136 GLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQ 215 (509)
T ss_dssp TCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876544 999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005807 292 TERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKD 371 (676)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~ 371 (676)
+++.++..+++++.+|+.+||++|+.||......+.++.+..+.+|..++.+.|+|++|+++++|+++++...|+++|++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~ 295 (509)
T 2v7y_A 216 EHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQD 295 (509)
T ss_dssp HHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHH
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99989888999999999999999999999998899988776544444567889999999999999999999999999999
Q ss_pred cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCCceeEEEeecccccceeeeCC
Q 005807 372 ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 451 (676)
Q Consensus 372 ~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~~~~~~~d~~~~s~gi~~~~~ 451 (676)
+++...+|+.|+||||+|++|+|++.|++.|+.++..+.||++|||+|||++|+.+++..+++.+.|++|++||+++.++
T Consensus 296 a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~~~~~~~dv~p~slgi~~~~~ 375 (509)
T 2v7y_A 296 AGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGG 375 (509)
T ss_dssp HTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCCCCCCCCCBCSSEEEEEETTT
T ss_pred cCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCccCceEEEeeccccceeecCC
Confidence 99988899999999999999999999999999888899999999999999999999988889999999999999999999
Q ss_pred eEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCeeEEEEEEcCCccEEE
Q 005807 452 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTV 531 (676)
Q Consensus 452 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~g~l~v 531 (676)
.|.++|+||++||++++++|++..|+|+.+.|.|||||+..+.+|..||+|.|.++||.|+|.++|+|+|++|.||+|+|
T Consensus 376 ~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v 455 (509)
T 2v7y_A 376 VFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHV 455 (509)
T ss_dssp EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEE
T ss_pred ceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005807 532 SAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNAD 585 (676)
Q Consensus 532 ~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 585 (676)
++.++.||++.+++|....+||++||++|++++++++++|++++++.++||++|
T Consensus 456 ~a~~~~~g~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 456 RAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp EEEETTTCCEEEEEECSSCSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred EEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 999999999999999988889999999999999999999999999999999986
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-63 Score=541.89 Aligned_cols=372 Identities=51% Similarity=0.837 Sum_probs=347.3
Q ss_pred CCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCH
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDA 131 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~ 131 (676)
.+.+||||||||||++|++.++.++++.|+.|++++||+|+|.. ++++||..|+.++..+|.++++++|+++|+.++++
T Consensus 22 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~ 100 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDA 100 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECS-SCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSH
T ss_pred cCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECC-CCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcH
Confidence 35699999999999999999999999999999999999999964 48999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEeCCCCCeEEE--eCC--eeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHH
Q 005807 132 QTQKEMKMVPFKIVNAPNGDAWVE--ANG--QQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKD 207 (676)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~v~--~~~--~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~ 207 (676)
.++...+.+||.+.. .+|...+. ..+ ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++
T Consensus 101 ~~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~ 179 (404)
T 3i33_A 101 TVQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKD 179 (404)
T ss_dssp HHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHH
Confidence 999999999999986 55555533 445 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEeeChhHHHHHhccccCC----CC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHH
Q 005807 208 AGRIAGLDVQRIINEPTAAALSYGMNNK----EG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALL 282 (676)
Q Consensus 208 Aa~~AGl~~~~li~Ep~AAal~y~~~~~----~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~ 282 (676)
|++.|||+++.+++||+|||++|+.... .+ .++|||+||||+|++++++.++.++++++.++..+||.+||+.|.
T Consensus 180 a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 259 (404)
T 3i33_A 180 AGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 259 (404)
T ss_dssp HHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred HHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999999988754 33 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHH
Q 005807 283 EFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTK 362 (676)
Q Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~ 362 (676)
+++.++|+++++.++..+++.+.+|+..||++|+.|+......+.++.+..+ .++.+.++|++|+++++|+++++.
T Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g----~~~~~~i~r~~~~~~~~~~~~~i~ 335 (404)
T 3i33_A 260 SHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----VDFYTSITRARFEELNADLFRGTL 335 (404)
T ss_dssp HHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCC----ceeEEEEcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888888876655 778999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHh-CCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 363 APCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 363 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f-g~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
+.|.++|+++++...+|+.|+|+||+|++|+|++.|++.| +.++..+.||++|||.|||++|+.+++
T Consensus 336 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 336 EPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999998889999999999999999999999999 688888999999999999999998875
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-63 Score=536.10 Aligned_cols=376 Identities=65% Similarity=1.043 Sum_probs=348.3
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
..+||||||||||++|++.+|.++++.|+.|++.+||+|+|+++++++||+.|+.+...+|.++++++|++||+.++++.
T Consensus 2 ~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 81 (383)
T 1dkg_D 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (383)
T ss_dssp -CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred CcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHH
Confidence 35899999999999999999999999999999999999999877889999999999999999999999999999999999
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
++...+.+||.++.+.++...+..+++.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|++.|
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~a 161 (383)
T 1dkg_D 82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 161 (383)
T ss_dssp HHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999988888888888788899999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhccccCC-C-CeEEEEeeCCceeEEEEEEEe----CCeEEEEEecCCCCcchHHHHHHHHHHHH
Q 005807 213 GLDVQRIINEPTAAALSYGMNNK-E-GLIAVFDLGGGTFDVSVLEIS----NGVFEVKATNGDTFLGGEDFDNALLEFLV 286 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y~~~~~-~-~~vlV~D~GgGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~ 286 (676)
|++++.+++||+|||++|+.... . ..++|||+||||+|+++++.. ++.++++++.++..+||.+||+.|.+++.
T Consensus 162 Gl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~ 241 (383)
T 1dkg_D 162 GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241 (383)
T ss_dssp TCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHH
T ss_pred CCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988753 3 399999999999999999998 67889999889899999999999999999
Q ss_pred HHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHH
Q 005807 287 SEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCK 366 (676)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~ 366 (676)
++|..+++.++..+++.+.+|+..||++|+.|+......+.++.+....+|..++.+.|+|++|+++++|+++++.+.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~ 321 (383)
T 1dkg_D 242 EEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLK 321 (383)
T ss_dssp HHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888999999999999999999998888888877655333335667899999999999999999999999
Q ss_pred HHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhcc
Q 005807 367 NCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILR 428 (676)
Q Consensus 367 ~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~ 428 (676)
++|+++++...+++.|+|+||+|++|+|++.|++.|+.++..+.||+++||+|||++|+.|+
T Consensus 322 ~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 322 VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 99999998888999999999999999999999999998888899999999999999999764
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=528.07 Aligned_cols=369 Identities=29% Similarity=0.460 Sum_probs=333.8
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
+.+||||||||||++|++.++.++++.|+.|++++||+|+|. ++.++||..|+.+...+|.++++++|+++|+.++++.
T Consensus 13 ~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~-~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~ 91 (409)
T 4gni_A 13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYV-DGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVD 91 (409)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEE-TTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCC
T ss_pred CcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEEC-CCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchh
Confidence 579999999999999999999999999999999999999995 6789999999999999999999999999999988775
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEe--------CCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHH
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEA--------NGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQA 204 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~--------~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~ 204 (676)
+.... +++.+. ..+|.+.+.. .++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++
T Consensus 92 ~~~~~--~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~ 168 (409)
T 4gni_A 92 PTHNH--ASAHPQ-EAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAA 168 (409)
T ss_dssp CGGGT--TSCCCE-EETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHH
T ss_pred hhhhc--ccccee-cCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHH
Confidence 55433 333332 2455555552 346899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCeEEeeChhHHHHHhccccC---CCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHH
Q 005807 205 TKDAGRIAGLDVQRIINEPTAAALSYGMNN---KEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNA 280 (676)
Q Consensus 205 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~---~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~ 280 (676)
|++|++.|||+++.+++||+|||++|+... ..+ .++|||+||||+|++++++.++.++++++.++..+||.+||+.
T Consensus 169 ~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 248 (409)
T 4gni_A 169 LIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKV 248 (409)
T ss_dssp HHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHH
Confidence 999999999999999999999999998864 233 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcc--CCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHH
Q 005807 281 LLEFLVSEFKRTER--IDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLI 358 (676)
Q Consensus 281 l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v 358 (676)
|.+++..+|..+++ .+...+++.+.+|+.+||++|+.||......+.++.+..+ .++.+.|||++|+++++|++
T Consensus 249 i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~~~~ 324 (409)
T 4gni_A 249 LIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDG----LDFASTINRLRYETIARTVF 324 (409)
T ss_dssp HHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCC----cceEEEeeHHHHHHHHHHHH
Confidence 99999999998888 7888899999999999999999999999999998877655 78899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCC--------CCCCCcchhHhhHHHHHhhhccC
Q 005807 359 ERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSP--------SKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 359 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~--------~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
+++..+|+++|+++++...+|+.|+||||+|++|+|++.|++.|+.++ ....||++|||+|||++|+....
T Consensus 325 ~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 325 EGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999988899999999999999999999999998652 57899999999999999997543
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-43 Score=341.39 Aligned_cols=215 Identities=56% Similarity=0.819 Sum_probs=208.8
Q ss_pred EEEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCC
Q 005807 435 LLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGI 514 (676)
Q Consensus 435 ~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~ 514 (676)
++.||+|+||||++.+|.|.+|||||++||++++++|+|..|||+.+.|.|||||+.++.+|..||+|.|.|+||+|+|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEcCCccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005807 515 PQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKS 594 (676)
Q Consensus 515 ~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~ 594 (676)
++|+|+|++|.||+|+|++.+++||++..++|.+..+||++||++|++++++|+++|++.+++.+++|.+|+|+|.+++.
T Consensus 82 ~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~ 161 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQ 161 (219)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhc
Q 005807 595 LGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAG 649 (676)
Q Consensus 595 l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~ 649 (676)
|+++.+++++++|++|.+.++++++||++++.+++++++++|++.+.++.++.|+
T Consensus 162 l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~~~~~i~~~~~~L~~~~~~i~~~~~~ 216 (219)
T 4e81_A 162 VEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQ 216 (219)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred HHHhhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9888889999999999999999999999999999999999999999999999887
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=361.36 Aligned_cols=313 Identities=27% Similarity=0.356 Sum_probs=236.6
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC-Cc-EEEcHHHHHhhhhCCCchHHHhhhhhcCCCCC
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GE-LLVGTPAKRQAVTNPANTLFGTKRLIGRRFND 130 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~-~~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d 130 (676)
+.+||||||||||++++..++ .++ .+||+|+|+.+ ++ .++|++|+.....+|.++...
T Consensus 3 ~~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~----------- 62 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI----------- 62 (344)
T ss_dssp -CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE-----------
T ss_pred CceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE-----------
Confidence 358999999999999875332 232 27999999766 45 479999998777777664210
Q ss_pred HHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 005807 131 AQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGR 210 (676)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~ 210 (676)
.|++ +|. + . ....++++.+++|++++.. .+++ ...+|||||++|++.||+++++|++
T Consensus 63 ---------~p~~-----~g~--i--~-~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~~ 119 (344)
T 1jce_A 63 ---------RPMR-----DGV--I--A-DYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAGL 119 (344)
T ss_dssp ---------CCEE-----TTE--E--S-SHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ---------ecCC-----CCe--e--C-ChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 1211 110 0 0 0012445555555444332 1233 3789999999999999999999999
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEF 289 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 289 (676)
.||++++.+++||+|||++|+.....+ .++|||+||||||+++++..... ..++..+||.+||+.|.+++.+++
T Consensus 120 ~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~ 194 (344)
T 1jce_A 120 EAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIV-----TWESIRIAGDEMDEAIVQYVRETY 194 (344)
T ss_dssp HTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEE-----EEEEESCSHHHHHHHHHHHHHHHH
T ss_pred HcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEE-----eeCCCCccChhHHHHHHHHHHHHh
Confidence 999999999999999999998765544 89999999999999998764322 245678999999999999998776
Q ss_pred hhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc------eeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHH
Q 005807 290 KRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ------TEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKA 363 (676)
Q Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~ 363 (676)
.. ++. ...||++|+.|+.... ..+.++.. +..+..+..+.|+|++|+++++|.++++.+
T Consensus 195 ~~----~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~ 259 (344)
T 1jce_A 195 RV----AIG---------ERTAERVKIEIGNVFPSKENDELETTVSGI--DLSTGLPRKLTLKGGEVREALRSVVVAIVE 259 (344)
T ss_dssp CE----ECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEE--ETTTTEEEEEEEEHHHHHHHTHHHHHHHHH
T ss_pred Cc----ccC---------HHHHHHHHHHHhccCccccCCcceEEEecc--ccCCCCceeEEEeHHHHHHHHHHHHHHHHH
Confidence 42 111 3679999999997643 23444321 111125678999999999999999999999
Q ss_pred HHHHHHHHcCCC--cCCC-cEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhcc
Q 005807 364 PCKNCLKDANIT--IKDV-DEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILR 428 (676)
Q Consensus 364 ~i~~~l~~~~~~--~~~i-~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~ 428 (676)
.|.++|++++.. ...+ +.|+|+||+|++|+|++.|++.|+.++....||+++||.||++++..++
T Consensus 260 ~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 260 SVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 999999987532 1224 6899999999999999999999998888889999999999999998654
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=319.61 Aligned_cols=215 Identities=36% Similarity=0.607 Sum_probs=208.4
Q ss_pred EeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCe
Q 005807 437 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQ 516 (676)
Q Consensus 437 ~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~ 516 (676)
.|++|+||||++.+|.|.+|||||++||++++++|++..|+|+.+.|+||||++.++.+|..||+|.|.|+||+|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005807 517 IEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLG 596 (676)
Q Consensus 517 i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~ 596 (676)
|+|+|++|.||+|+|++.++.||++..++|....+||+++|++|++++++|+++|++++++.+++|.+|+|+|++++.|.
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~ 160 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA 160 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999998
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005807 597 EYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGS 651 (676)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~L~~~~~~i~~~~~~~~ 651 (676)
++.+++++++|+++.+.|+++++||++++.++|++++++|++.+.++..++|+++
T Consensus 161 ~~~~~~~~~~k~~i~~~l~~~~~wl~~~d~~~~~~~~~~L~~~~~~i~~r~~~~~ 215 (227)
T 1u00_A 161 ADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQS 215 (227)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998899999999999999999999988644
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=274.45 Aligned_cols=164 Identities=70% Similarity=0.973 Sum_probs=154.2
Q ss_pred ceeEEEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCC
Q 005807 432 KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAP 511 (676)
Q Consensus 432 ~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~ 511 (676)
..+.+.|++|+||||++.+|.|.+|||||++||++++++|++..|||+.+.|.|||||+.++.+|.+||+|.|.++||+|
T Consensus 18 ~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~p 97 (182)
T 3n8e_A 18 LYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAP 97 (182)
T ss_dssp ------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCC
T ss_pred CCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEcCCccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 005807 512 RGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSI 591 (676)
Q Consensus 512 ~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~ 591 (676)
+|.++|+|+|++|.||+|+|+|.+++||++..++|....+||++||++|++++++|+++|++.+++.++||+||+|+|++
T Consensus 98 ~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~~ 177 (182)
T 3n8e_A 98 RGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDT 177 (182)
T ss_dssp TTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999998
Q ss_pred HHHH
Q 005807 592 EKSL 595 (676)
Q Consensus 592 ~~~l 595 (676)
++.|
T Consensus 178 ~~~l 181 (182)
T 3n8e_A 178 ETKM 181 (182)
T ss_dssp SCCC
T ss_pred HHhh
Confidence 7654
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-32 Score=251.00 Aligned_cols=150 Identities=60% Similarity=0.895 Sum_probs=145.0
Q ss_pred EEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCC
Q 005807 436 LLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIP 515 (676)
Q Consensus 436 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~ 515 (676)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|+|+.+.|.|||||+..+.+|.+||+|.|.|+||+|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005807 516 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNAD 585 (676)
Q Consensus 516 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 585 (676)
+|+|+|++|.||+|+|++.|++||++..++|... ++||++||++|++++++|+++|++.+++.++||.||
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999986 789999999999999999999999999999999875
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=251.90 Aligned_cols=150 Identities=57% Similarity=0.907 Sum_probs=141.4
Q ss_pred EEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCC
Q 005807 436 LLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIP 515 (676)
Q Consensus 436 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~ 515 (676)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|+|+.+.|.|||||+..+.+|.+||+|.|.|+||+|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005807 516 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNAD 585 (676)
Q Consensus 516 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 585 (676)
+|+|+|++|.||+|+|+|.|++||++..++|.+. +.||++||++|++++++|+++|++.+++.++||.||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999986 459999999999999999999999999999988764
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-33 Score=253.06 Aligned_cols=150 Identities=73% Similarity=1.063 Sum_probs=143.4
Q ss_pred EEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCC
Q 005807 436 LLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIP 515 (676)
Q Consensus 436 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~ 515 (676)
+.|++|+|||+++.+|.|.+|||||++||++++++|++..|||+.+.|.|||||+..+.+|.+||+|.|.++||+|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCccEEEEEEecCCCceeeEEeccCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005807 516 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNAD 585 (676)
Q Consensus 516 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 585 (676)
+|+|+|++|.||+|+|+|.|+.||++..++|.+..+||++||++|++++++|+++|++.+++.++||+||
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988899999999999999999999999998888888754
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-30 Score=235.67 Aligned_cols=150 Identities=56% Similarity=0.902 Sum_probs=143.8
Q ss_pred EEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCC
Q 005807 436 LLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIP 515 (676)
Q Consensus 436 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~ 515 (676)
+.|++|+||||++.+|.|.+||+||++||++++++|++..|||+.+.|.||||++.++.+|..||+|.|.++||.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005807 516 QIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNAD 585 (676)
Q Consensus 516 ~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 585 (676)
+|+|+|++|.||+|+|++.+..||++..++|... ++||++||++|++++++|+.+|++.+++.++||.||
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999876 579999999999999999999999999999998764
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-29 Score=261.72 Aligned_cols=224 Identities=17% Similarity=0.136 Sum_probs=168.9
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhCCCCCeEE--EEeCCCCCHHHHHHHHHHHHHc--------C------CCeEEeeChh
Q 005807 160 QYSPSQIGAFVLTKMKETAESYLGKSVSEAV--ITVPAYFNDAQRQATKDAGRIA--------G------LDVQRIINEP 223 (676)
Q Consensus 160 ~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~V--ITVPa~~~~~qr~~l~~Aa~~A--------G------l~~~~li~Ep 223 (676)
.+.+++..++++..|+..++...+.+ .++| |+||++|++.||+++++++..+ | +..+++++||
T Consensus 94 ~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep 172 (346)
T 2fsj_A 94 RLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQG 172 (346)
T ss_dssp CTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETT
T ss_pred cccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccH
Confidence 34557777778877776653223333 5799 9999999999999999997776 4 3568899999
Q ss_pred HHHHHhc--cccCC-C-CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccC--CC
Q 005807 224 TAAALSY--GMNNK-E-GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERI--DL 297 (676)
Q Consensus 224 ~AAal~y--~~~~~-~-~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~--~~ 297 (676)
+|||++| ..... . .+++|||+||||||++++++.++. .+.+++++..+||++|++.|.+++.+++. . .+
T Consensus 173 ~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g----~~~~i 247 (346)
T 2fsj_A 173 VGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAISALSRKIAKETG----FVVPF 247 (346)
T ss_dssp HHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHHHHHHHHHHHHC----CCCCH
T ss_pred HHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHHHHHHHHHHHhC----CCcCC
Confidence 9999987 21112 2 489999999999999999887776 55555678899999999999988777664 2 21
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHH-HHHHhHHHHHHHHHHHHHHHHcCCCc
Q 005807 298 SQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKF-ETLVNHLIERTKAPCKNCLKDANITI 376 (676)
Q Consensus 298 ~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~f-e~~~~~~v~~i~~~i~~~l~~~~~~~ 376 (676)
. ...+| ....+.+. | . .++++++ +++++++++++.+.|++.|+++ .
T Consensus 248 ~---------~~~~e---------~~~~~~~~-------g-~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~ 294 (346)
T 2fsj_A 248 D---------LAQEA---------LSHPVMFR-------Q-K----QVGGPEVSGPILEDLANRIIENIRLNLRGE---V 294 (346)
T ss_dssp H---------HHHHH---------TTSCEEET-------T-E----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---G
T ss_pred C---------HHHHh---------cCCeEeEC-------C-c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---h
Confidence 1 11122 01112211 1 2 2558999 9999999999999999999876 4
Q ss_pred CCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCC---CCCcchhHhhHHHHHhh
Q 005807 377 KDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSK---GVNPDEAVALGAAIQGG 425 (676)
Q Consensus 377 ~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~---~~~p~~aVa~GAal~a~ 425 (676)
.+++.|+|+||+|++ +++.|++.|+. +.. ..||++|+|.|+..++.
T Consensus 295 ~~i~~IvL~GGga~l--l~~~l~~~~~~-~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 295 DRVTSLIPVGGGSNL--IGDRFEEIAPG-TLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp GGEEEEEEESTTHHH--HGGGGGGGSTT-CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred hcccEEEEECCcHHH--HHHHHHHHCcC-cEEeccCCCcHHHHHHHHHHHHh
Confidence 568999999999999 99999999974 334 67999999999998765
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=263.36 Aligned_cols=316 Identities=17% Similarity=0.208 Sum_probs=207.5
Q ss_pred CCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCH
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDA 131 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~ 131 (676)
...++|||+|||+++++++.++.+.+. ..|...+|+... ++....+++.+...+|+++++.-.
T Consensus 12 ~~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~-------------~~g~i~d~~~~~~~ik~~~~~~~~-- 74 (377)
T 2ych_A 12 RVEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL-------------MEGMVAEPAALAQEIKELLLEART-- 74 (377)
T ss_dssp CCCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE-------------ETTEESCHHHHHHHHHHHHHHHTC--
T ss_pred CCceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc-------------cCCCcCCHHHHHHHHHHHHHHcCC--
Confidence 346899999999999999876665552 234445555322 222445777888899998875100
Q ss_pred HHHHHhccCCeEEEeCCCCCeEE-EeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHH---------
Q 005807 132 QTQKEMKMVPFKIVNAPNGDAWV-EANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQ--------- 201 (676)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~q--------- 201 (676)
..+.. .+..+...... ......++++++... ++..++++++.++.+++|.+|. .+.+
T Consensus 75 ----~~~~v---~~~i~~~~~~~~~~~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~--~~~~~~~~~~~~~ 141 (377)
T 2ych_A 75 ----RKRYV---VTALSNLAVILRPIQVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAP--LTPLSEVQEGEQV 141 (377)
T ss_dssp ----CCCEE---EEEECGGGCEEEEEEEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEE--SSCGGGSCTTSEE
T ss_pred ----CcceE---EEEecCCcEEEEEEECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEE--eCCCCCCCCccee
Confidence 00000 11112111111 111245788887653 3457788899999999999983 3222
Q ss_pred -----------HHHHHHHHHHcCCCeEEeeChhHHHHHhccccC---CCCeEEEEeeCCceeEEEEEEEeCCeEEEEEec
Q 005807 202 -----------RQATKDAGRIAGLDVQRIINEPTAAALSYGMNN---KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATN 267 (676)
Q Consensus 202 -----------r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~---~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~ 267 (676)
.+.+++|++.|||++..++.||+|||++|+... ....++|+|+||||||+++++ .+.+. ..
T Consensus 142 ~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~--~g~~~---~~ 216 (377)
T 2ych_A 142 QVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR--GDKPL---AV 216 (377)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEE--TTEEE---EE
T ss_pred EEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEE--CCEEE---EE
Confidence 388999999999999999999999999986532 223799999999999999986 34332 24
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcH
Q 005807 268 GDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTR 347 (676)
Q Consensus 268 g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr 347 (676)
++..+||.+||+.|.+.+ +.+ ...||++|+.++............... ......+++
T Consensus 217 ~~~~~GG~~i~~~i~~~~--------~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~~----~~~~~~i~~ 273 (377)
T 2ych_A 217 RVLTLSGKDFTEAIARSF--------NLD-----------LLAAEEVKRTYGMATLPTEDEELLLDF----DAERERYSP 273 (377)
T ss_dssp EEESCSHHHHHHHHHHHT--------TCC-----------HHHHHHHHHHTC----------------------------
T ss_pred EeeechHHHHHHHHHHHh--------CCC-----------HHHHHHHHhhccccccccccccccccc----ccccccCCH
Confidence 567899999999988732 221 357899999988643221110000000 113457899
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHc--CCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCC----------------
Q 005807 348 SKFETLVNHLIERTKAPCKNCLKDA--NITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKG---------------- 409 (676)
Q Consensus 348 ~~fe~~~~~~v~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~---------------- 409 (676)
++|++++++.++++...|++.|+.. +.....++.|+|+||+|++|.+++.+++.|+.++...
T Consensus 274 ~~~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~P~~~v~~~~~~~~~~ 353 (377)
T 2ych_A 274 GRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESE 353 (377)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECCGGGGSBCCTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecCchhhcccCcccCCHH
Confidence 9999999999999999999999853 4555678999999999999999999999998643221
Q ss_pred ----CCcchhHhhHHHHHhh
Q 005807 410 ----VNPDEAVALGAAIQGG 425 (676)
Q Consensus 410 ----~~p~~aVa~GAal~a~ 425 (676)
.+|..++|.|+|+++.
T Consensus 354 ~l~~~~p~~a~a~Glal~~~ 373 (377)
T 2ych_A 354 QLQEIGPEFAVALGLALRGV 373 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhHHHHHHHHHHHcCC
Confidence 2345677888888765
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=234.67 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEe
Q 005807 164 SQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD 243 (676)
Q Consensus 164 ~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D 243 (676)
.+....+|+++++.++.+.+.....+++|+|++|+..+|++++++++.+|+++..++.||+|++++|+.. ..+|+|
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~----~~~viD 145 (272)
T 3h1q_A 70 YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN----DGIVVD 145 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS----SEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC----CEEEEE
Confidence 3556788899999998888888899999999999999999999999999999999999999999998764 359999
Q ss_pred eCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc
Q 005807 244 LGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ 323 (676)
Q Consensus 244 ~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~ 323 (676)
+||||++++++. ++... ......+||.+||+.+.+++.-. ...+|++|+.++
T Consensus 146 iGggst~~~~~~--~g~~~---~~~~~~~Gg~~~~~~l~~~l~~~-------------------~~~ae~~k~~~~---- 197 (272)
T 3h1q_A 146 IGGGTTGIAVIE--KGKIT---ATFDEPTGGTHLSLVLAGSYKIP-------------------FEEAETIKKDFS---- 197 (272)
T ss_dssp ECSSCEEEEEEE--TTEEE---EECCBSCCHHHHHHHHHHHHTCC-------------------HHHHHHHHHSST----
T ss_pred ECCCcEEEEEEE--CCEEE---EEecCCCcHHHHHHHHHHHhCCC-------------------HHHHHHHHHhcC----
Confidence 999999999976 44332 24668999999999998876411 257888988765
Q ss_pred eeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhC
Q 005807 324 TEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFG 403 (676)
Q Consensus 324 ~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg 403 (676)
+++++++++.++++++...+.+.++..+ +++.|+|+||++++|++++.+++.|+
T Consensus 198 ----------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l~ 251 (272)
T 3h1q_A 198 ----------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFLG 251 (272)
T ss_dssp ----------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHHS
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHhC
Confidence 5789999999999999999999998754 36899999999999999999999999
Q ss_pred CCCCCCCCcchhHhhHHHHHh
Q 005807 404 KSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 404 ~~~~~~~~p~~aVa~GAal~a 424 (676)
.++..+.+|++++|.|||++|
T Consensus 252 ~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 252 KEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp SCCBCCSSGGGHHHHHHHTTC
T ss_pred CCccccCChHHHHHHHHHhcC
Confidence 988889999999999999875
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=248.68 Aligned_cols=308 Identities=17% Similarity=0.180 Sum_probs=205.5
Q ss_pred CCceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCC-----------------cEEEcHHHHHhhhhCCC
Q 005807 52 GNDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKG-----------------ELLVGTPAKRQAVTNPA 114 (676)
Q Consensus 52 ~~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~-----------------~~~~G~~A~~~~~~~p~ 114 (676)
....|+||+||+++++++..++.|.++ +||+|+...+. ..++|++|... +
T Consensus 4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~- 70 (418)
T 1k8k_A 4 RLPACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----P- 70 (418)
T ss_dssp CSCCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-----------CCCTTGGGCEEEGGGGTSC----T-
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCCc--------CCceEEEECcccccccccccccccccccCeEEChHHHhc----C-
Confidence 346899999999999999766566543 47777764321 25566665432 1
Q ss_pred chHHHhhhhhcCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCC--CCeEEEE
Q 005807 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKS--VSEAVIT 192 (676)
Q Consensus 115 ~~~~~~K~llg~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~--~~~~VIT 192 (676)
+ ..+++ |+ .+|...+.+ ....++.++.. +.++.. ...++||
T Consensus 71 ~--~~~~~------------------pi-------------~~G~i~d~d-~~e~i~~~~~~---~~L~~~~~~~~vvit 113 (418)
T 1k8k_A 71 T--YATKW------------------PI-------------RHGIVEDWD-LMERFMEQVIF---KYLRAEPEDHYFLLT 113 (418)
T ss_dssp T--SEEEC------------------CE-------------ETTEESCHH-HHHHHHHHHHH---TTTCCCGGGCCEEEE
T ss_pred C--CEEec------------------cc-------------cCCEECCHH-HHHHHHHHHHH---hccCCCCCCCcEEEE
Confidence 0 01111 11 122222332 23344444432 334432 3579999
Q ss_pred eCCCCCHHHHHHHHHHH-HHcCCCeEEeeChhHHHHHh-cc---ccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEec
Q 005807 193 VPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAAALS-YG---MNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATN 267 (676)
Q Consensus 193 VPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~-y~---~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~ 267 (676)
+|++|+..+|++|.+++ +.+|++.+.+++||+||+++ |. ....+.+.+|||+||||||++++. +|.. +....
T Consensus 114 ~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~--~G~~-~~~~~ 190 (418)
T 1k8k_A 114 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVA--EGYV-IGSCI 190 (418)
T ss_dssp ECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEE--TTEE-CGGGC
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeE--CCEE-cccce
Confidence 99999999999999999 88999999999999999987 42 211122679999999999999975 4432 22223
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc-----------------eeeeccc
Q 005807 268 GDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ-----------------TEINLPF 330 (676)
Q Consensus 268 g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------------~~~~i~~ 330 (676)
+..++||+++|+.|.++|..++. ...... -...+|++|+.++.... ..+.+|.
T Consensus 191 ~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~-------~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd 260 (418)
T 1k8k_A 191 KHIPIAGRDITYFIQQLLRDREV---GIPPEQ-------SLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGIN 260 (418)
T ss_dssp EEESCSHHHHHHHHHHHHHTTCC---CCCGGG-------HHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEEC
T ss_pred EEEeCcHHHHHHHHHHHHHhcCC---CCCCHH-------HHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCC
Confidence 56789999999999999876542 111111 12467888888765421 1233332
Q ss_pred cccCCCCCeeeEEEEcHHHH---HHHHhHHH------HHHHHHHHHHHHHcCC--CcCCCcEEEEEcCCcCcHHHHHHHH
Q 005807 331 ITADASGAKHLNITLTRSKF---ETLVNHLI------ERTKAPCKNCLKDANI--TIKDVDEVLLVGGMTRVPKVQEIVT 399 (676)
Q Consensus 331 ~~~~~~g~~~~~~~itr~~f---e~~~~~~v------~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~i~~~l~ 399 (676)
.. ......+.+++++| |.+|+|.+ ..+.+.|.+.|..+.. ....++.|+|+||+|++|.++++|+
T Consensus 261 ~~----~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~ 336 (418)
T 1k8k_A 261 AI----SKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQ 336 (418)
T ss_dssp TT----TCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHH
T ss_pred CC----CCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHH
Confidence 11 12455788999999 66666542 5688888999987653 3345688999999999999999998
Q ss_pred HHhCC------------------------CCCCCCCcchhHhhHHHHHhhh
Q 005807 400 EIFGK------------------------SPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 400 ~~fg~------------------------~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+.|+. ++..+.+|..++..||+++|..
T Consensus 337 ~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 337 RDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 76641 1223457889999999999874
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=243.39 Aligned_cols=298 Identities=16% Similarity=0.148 Sum_probs=197.5
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC---------CcEEEcHHHHHhhhhCCCchHHHhhhhh
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPANTLFGTKRLI 124 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~p~~~~~~~K~ll 124 (676)
..|+||+||+++++++..++.|.++. ||+|+.... ...++|++|.... .. ..+++
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~~--------ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~~--~~~~~-- 69 (375)
T 2fxu_A 6 TALVCDNGSGLVKAGFAGDDAPRAVF--------PSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----GI--LTLKY-- 69 (375)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEEE--------ECCEEEECTTTC-------CCEEHHHHHHHT----TS--EEEEC--
T ss_pred ceEEEECCCCeEEEEECCCCCCceee--------ccccccccccccccCCCCCCeEechhHhhcC----cc--cceec--
Confidence 57999999999999997766665332 555554321 3467888886531 00 01111
Q ss_pred cCCCCCHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCC--CCeEEEEeCCCCCHHHH
Q 005807 125 GRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKS--VSEAVITVPAYFNDAQR 202 (676)
Q Consensus 125 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~--~~~~VITVPa~~~~~qr 202 (676)
|+ .+|...+.+ ....+++++.. +.++.. ...++||+|++++..+|
T Consensus 70 ----------------Pi-------------~~G~i~d~d-~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r 116 (375)
T 2fxu_A 70 ----------------PI-------------EHGIITNWD-DMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANR 116 (375)
T ss_dssp ----------------SE-------------ETTEECCHH-HHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHH
T ss_pred ----------------cc-------------cCCcccCHH-HHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHH
Confidence 11 112222222 33444454442 334433 24699999999999999
Q ss_pred HHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 203 QATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 203 ~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
+++.++ .+.+|++.+.+++||+|||++++. .+.+|+|+|+||||++.+ .+|. .+....+..++||+++|+.|
T Consensus 117 ~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~----~~~lVvDiG~gtt~v~~v--~~G~-~~~~~~~~~~~GG~~lt~~l 189 (375)
T 2fxu_A 117 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVTHNVPI--YEGY-ALPHAIMRLDLAGRDLTDYL 189 (375)
T ss_dssp HHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC----SSEEEEEECSSCEEEEEE--ETTE-ECGGGCEEESCCHHHHHHHH
T ss_pred HHHHHHHHHhcCcceEEEccchheeeeecCC----CeEEEEEcCCCceEEeEe--ECCE-EeccceEEeccCHHHHHHHH
Confidence 988876 488899999999999999999985 367999999999998765 4553 22222345789999999999
Q ss_pred HHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC----------------CceeeeccccccCCCCCeeeEEEE
Q 005807 282 LEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSST----------------SQTEINLPFITADASGAKHLNITL 345 (676)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------------~~~~~~i~~~~~~~~g~~~~~~~i 345 (676)
.+++..+. ..+... .-...+|++|+.++.. ....+.+|. ...+.+
T Consensus 190 ~~~l~~~~-----~~~~~~-----~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpd---------g~~i~i 250 (375)
T 2fxu_A 190 MKILTERG-----YSFVTT-----AEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPD---------GQVITI 250 (375)
T ss_dssp HHHHHHHT-----CCCCSH-----HHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTT---------SCEEEE
T ss_pred HHHHHhcC-----CCCCcH-----HHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCC---------CCEEEE
Confidence 99998752 112110 0123455566555432 223333331 125778
Q ss_pred cHHHH---HHHHhHH-----HHHHHHHHHHHHHHcCC--CcCCCcEEEEEcCCcCcHHHHHHHHHHhC--------CCCC
Q 005807 346 TRSKF---ETLVNHL-----IERTKAPCKNCLKDANI--TIKDVDEVLLVGGMTRVPKVQEIVTEIFG--------KSPS 407 (676)
Q Consensus 346 tr~~f---e~~~~~~-----v~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~i~~~l~~~fg--------~~~~ 407 (676)
+++.| |.+++|. ...+.+.|.+.+..+.. ....++.|+|+||+|++|.++++|++.++ .++.
T Consensus 251 ~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~ 330 (375)
T 2fxu_A 251 GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKII 330 (375)
T ss_dssp STHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEE
T ss_pred ChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEE
Confidence 88877 4455553 34577777888876532 22335789999999999999999999885 2333
Q ss_pred CCCCcchhHhhHHHHHhhh
Q 005807 408 KGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 408 ~~~~p~~aVa~GAal~a~~ 426 (676)
.+.+|.++++.||+++|..
T Consensus 331 ~~~~p~~~~w~G~si~a~l 349 (375)
T 2fxu_A 331 APPERKYSVWIGGSILASL 349 (375)
T ss_dssp CCTTTTSHHHHHHHHHHHC
T ss_pred cCCCCCccEEcchHHhhCc
Confidence 5679999999999999983
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=241.13 Aligned_cols=197 Identities=16% Similarity=0.145 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHcCCCeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 005807 200 AQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFD 278 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D 278 (676)
...+.+.+|++.|||++..++.||.|||++|......+ .++|+|+||||||++++. ++.+.. .++.++||++||
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~--~g~~~~---~~~i~~GG~~it 242 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYK--NGVPIK---ISYVPVGMKHVI 242 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEE--TTEEEE---EEEESCCHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEE--CCEEEE---EEecccHHHHHH
Confidence 45678999999999999999999999999987554333 899999999999999976 555433 345789999999
Q ss_pred HHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC-----CceeeeccccccCCCCCeeeEEEEcHHHHHHH
Q 005807 279 NALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSST-----SQTEINLPFITADASGAKHLNITLTRSKFETL 353 (676)
Q Consensus 279 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~ 353 (676)
+.|...+.- ....||++|+.++.. ....+.++... ......++|++|+++
T Consensus 243 ~dIa~~l~~-------------------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~------~~~~~~is~~~l~~i 297 (419)
T 4a2a_A 243 KDVSAVLDT-------------------SFEESERLIITHGNAVYNDLKEEEIQYRGLD------GNTIKTTTAKKLSVI 297 (419)
T ss_dssp HHHHHHHTC-------------------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTT------SCSEEEEEHHHHHHH
T ss_pred HHHHHHHCC-------------------CHHHHHHHHHHhccCcccCCCCceEEEeecC------CccceEEcHHHHHHH
Confidence 999876432 236899999998753 33455555432 135688999999999
Q ss_pred HhHHHHHHHHHHHHHHHHcCC------CcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCC--C-----C----------C
Q 005807 354 VNHLIERTKAPCKNCLKDANI------TIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPS--K-----G----------V 410 (676)
Q Consensus 354 ~~~~v~~i~~~i~~~l~~~~~------~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~--~-----~----------~ 410 (676)
++|.++++.+.|++.|+.++. ....++.|+|+||+|++|.|++.+++.||.++. . + .
T Consensus 298 i~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~~~~~~~~ 377 (419)
T 4a2a_A 298 IHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVAN 377 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCBTCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhccCcccccC
Confidence 999999999999999999987 345689999999999999999999999986532 1 1 4
Q ss_pred CcchhHhhHHHHHhhh
Q 005807 411 NPDEAVALGAAIQGGI 426 (676)
Q Consensus 411 ~p~~aVa~GAal~a~~ 426 (676)
+|..+++.|.++++..
T Consensus 378 ~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 378 DPSFAAAFGNVFAVSE 393 (419)
T ss_dssp CGGGHHHHHTTCC---
T ss_pred CchHHHHHHHHHHHhh
Confidence 8999999999998865
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=195.13 Aligned_cols=121 Identities=71% Similarity=1.046 Sum_probs=111.0
Q ss_pred ceeEEEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCC
Q 005807 432 KELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAP 511 (676)
Q Consensus 432 ~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~ 511 (676)
+++.+.|++|++|||++.++.|.+||+||++||++++++|++..|||+.+.|.|||||+..+.+|..||+|.|.++||+|
T Consensus 15 ~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~p 94 (135)
T 1q5l_A 15 RGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAP 94 (135)
T ss_dssp ------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSCC
T ss_pred CcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEcCCccEEEEEEecCCCceeeEEeccCCCC
Q 005807 512 RGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGL 552 (676)
Q Consensus 512 ~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~~~ 552 (676)
+|.++|+|+|++|.||+|+|++.|+.||++..++|....+|
T Consensus 95 ~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~l 135 (135)
T 1q5l_A 95 RGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 135 (135)
T ss_dssp SSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCCC
T ss_pred CceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999876543
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-23 Score=219.04 Aligned_cols=225 Identities=18% Similarity=0.173 Sum_probs=148.5
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCC-CCHH--HH--HHHHHH------------HHHcCCCeEEeeCh
Q 005807 160 QYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAY-FNDA--QR--QATKDA------------GRIAGLDVQRIINE 222 (676)
Q Consensus 160 ~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~-~~~~--qr--~~l~~A------------a~~AGl~~~~li~E 222 (676)
.+++..+++.+ ..|+. +.. .+.+ ..+|+++|.. |... |+ +++.+- ++.+++..+.+++|
T Consensus 73 ~~~~~~l~~i~-~aL~~-~~~-~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e 148 (320)
T 2zgy_A 73 QYSDVNVVAVH-HALLT-SGL-PVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPE 148 (320)
T ss_dssp GGSHHHHHHHH-HHHHH-HSC-CSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEES
T ss_pred cchHHHHHHHH-HHHHH-cCC-CCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecC
Confidence 46677666643 44442 211 1222 3699999987 6531 21 212111 23445677899999
Q ss_pred hHHHHHhccccCC-CCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCH
Q 005807 223 PTAAALSYGMNNK-EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDK 301 (676)
Q Consensus 223 p~AAal~y~~~~~-~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~ 301 (676)
|.||+++|..... +..++|+|+||||+|+++++ ++.+.+.+..++.++||.+||+.|.+++.++ +.++. .
T Consensus 149 ~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i~--~ 219 (320)
T 2zgy_A 149 SIPAGYEVLQELDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKGS--S 219 (320)
T ss_dssp SHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGGG--H
T ss_pred cHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHc-----CCCCC--H
Confidence 9999998874433 34999999999999999987 5555566667888999999999999988642 22221 1
Q ss_pred HHHHHHHHHHHHH-HHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCc
Q 005807 302 LALQRLRESAEKA-KIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVD 380 (676)
Q Consensus 302 ~~~~~L~~~~e~~-K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~ 380 (676)
..+|++ |..- . ... .....+ ..-..+++.+++++.++++.+.|.+.+++. .+++
T Consensus 220 -------~~ae~~lk~~~---~--~~~---~~~~i~------~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~ 274 (320)
T 2zgy_A 220 -------YLADDIIIHRK---D--NNY---LKQRIN------DENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYT 274 (320)
T ss_dssp -------HHHHHHHHTTT---C--HHH---HHHHSS------SSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCC
T ss_pred -------HHHHHHHHHhh---h--hhc---ccceec------CchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCC
Confidence 234444 3320 0 000 000000 001345666677777777777777666552 5689
Q ss_pred EEEEEcCCcCcHHHHHHHHHHhCC---CCCCCCCcchhHhhHHHHHh
Q 005807 381 EVLLVGGMTRVPKVQEIVTEIFGK---SPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 381 ~ViLvGG~s~~p~i~~~l~~~fg~---~~~~~~~p~~aVa~GAal~a 424 (676)
.|+|+||+|++ +++.|++.|+. ++....||++|+|.||+++|
T Consensus 275 ~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 275 HVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp EEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred eEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 99999999987 99999999987 47778999999999999875
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-20 Score=202.03 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=91.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEE
Q 005807 187 SEAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKA 265 (676)
Q Consensus 187 ~~~VITVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~ 265 (676)
..++||+|+.++..+|+++.+++ +.+|++.+.+++||.||+++++.. ..+|+|+|+|||+++.+. +|.. +..
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~----~~lVVDiG~g~T~v~pv~--~G~~-~~~ 177 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLL----TGVVVDSGDGVTHICPVY--EGFS-LPH 177 (394)
T ss_dssp -----------------------------------------------------CCEEEECSSCEEEECEE--TTEE-CST
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCc----eEEEEEcCCCceEeeeeE--CCEE-ccc
Confidence 35999999999999999988864 788999999999999999998753 569999999999998753 4432 111
Q ss_pred ecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCc----------------eeeecc
Q 005807 266 TNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQ----------------TEINLP 329 (676)
Q Consensus 266 ~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----------------~~~~i~ 329 (676)
......+||+++|+.|.++|..+. +......+ ...+|++|+.++.... ..+.+|
T Consensus 178 ~~~~~~~GG~~lt~~l~~~l~~~~---~~~~~~~~-------~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lp 247 (394)
T 1k8k_B 178 LTRRLDIAGRDITRYLIKLLLLRG---YAFNHSAD-------FETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLP 247 (394)
T ss_dssp TCEEESCCHHHHHHHHHHHHHHTT---CCCCTTTT-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT
T ss_pred ceEEeeccHHHHHHHHHHHHHhcC---CCCCcHHH-------HHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECC
Confidence 123468999999999999987641 11111111 2346667776654321 112222
Q ss_pred ccccCCCCCeeeEEEEcHHHH---HHHHhHH-----HHHHHHHHHHHHHHcCCC--cCCCcEEEEEcCCcCcHHHHHHHH
Q 005807 330 FITADASGAKHLNITLTRSKF---ETLVNHL-----IERTKAPCKNCLKDANIT--IKDVDEVLLVGGMTRVPKVQEIVT 399 (676)
Q Consensus 330 ~~~~~~~g~~~~~~~itr~~f---e~~~~~~-----v~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~i~~~l~ 399 (676)
....+.++++.| |-+++|. ...+.+.|.+.+..+..+ ..-++.|+|+||+|++|.+.++|+
T Consensus 248 ---------dg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~ 318 (394)
T 1k8k_B 248 ---------DGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLE 318 (394)
T ss_dssp ---------TSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHH
T ss_pred ---------CCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHH
Confidence 112567788777 3344442 245677778888876432 223578999999999999999998
Q ss_pred HHhCC-----------------C--CCCCCCcchhHhhHHHHHhhh
Q 005807 400 EIFGK-----------------S--PSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 400 ~~fg~-----------------~--~~~~~~p~~aVa~GAal~a~~ 426 (676)
+.++. + +..+.+|..++..|++++|..
T Consensus 319 ~el~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 319 RELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp HHHHHHHHHHTCSSCCCTTCCCCC----------------------
T ss_pred HHHHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCC
Confidence 87742 1 222567889999999998874
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=185.05 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=125.3
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFK 290 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 290 (676)
.++...+..|+||+|+++++..... +...|+|+|||+++++++. .++.+++....+....|+.+|+..+.+++...+.
T Consensus 68 ~a~~~~~~~Vne~~aha~a~~~~~~-~~~~vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~ 145 (276)
T 4ehu_A 68 MNYSDADKQISELSCHARGVNFIIP-ETRTIIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVS 145 (276)
T ss_dssp GGCCSCSEECCHHHHHHHHHHHHST-TCCEEEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCGG
T ss_pred HHhhCCCcccchHHHHHHHHHHhCC-CCCeEEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccChh
Confidence 3666778999999999998766543 3457899999999999884 5678888888888999999999999988865443
Q ss_pred hhccCCCccCHHHHHHHHHHHHHHHH--HcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHH
Q 005807 291 RTERIDLSQDKLALQRLRESAEKAKI--ELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNC 368 (676)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~~~e~~K~--~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~ 368 (676)
..... +..++. .+++.......-+.+.. .-.....++++..+.+.+.+.+...
T Consensus 146 ~~~~~---------------~~~a~~~~~i~~~~~~f~~s~~~~~----------~~~~~~~~di~a~~~~~v~~~l~~~ 200 (276)
T 4ehu_A 146 ELGSI---------------SMNSQNEVSISSTCTVFAESEVISH----------LSENAKIEDIVAGIHTSVAKRVSSL 200 (276)
T ss_dssp GHHHH---------------HTTCSSCCCCCCCSHHHHHHHHHHH----------HHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHH---------------HhcCCCCCCcCCccchhhhhHHHHh----------hhccccHHHHHHHHHHHHHHHHHHH
Confidence 21100 000000 00000000000000000 0000112455666666655555554
Q ss_pred HHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 369 LKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 369 l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
.... ..++.|+|+||.+++|.|++.+++.||.++..+.+|++++|+|||++|...
T Consensus 201 ~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~ 255 (276)
T 4ehu_A 201 VKRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDE 255 (276)
T ss_dssp HHHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHH
T ss_pred HHhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHH
Confidence 4443 456899999999999999999999999999999999999999999999754
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=173.80 Aligned_cols=203 Identities=17% Similarity=0.228 Sum_probs=137.7
Q ss_pred eEEEEeCCCCCHHHH-HHHHHHHHHcCC------------CeEEeeChhHHHHHhccccC-------CCCeEEEEeeCCc
Q 005807 188 EAVITVPAYFNDAQR-QATKDAGRIAGL------------DVQRIINEPTAAALSYGMNN-------KEGLIAVFDLGGG 247 (676)
Q Consensus 188 ~~VITVPa~~~~~qr-~~l~~Aa~~AGl------------~~~~li~Ep~AAal~y~~~~-------~~~~vlV~D~GgG 247 (676)
.+++.+|..+...+| +++++++...+- ..+.+++||.||+++++.+. ....++|+|+|||
T Consensus 115 ~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGgg 194 (355)
T 3js6_A 115 VIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSG 194 (355)
T ss_dssp EEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSS
T ss_pred EEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCC
Confidence 789999999888887 589998875543 46789999999999987653 2348999999999
Q ss_pred eeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeee
Q 005807 248 TFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEIN 327 (676)
Q Consensus 248 T~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~ 327 (676)
|+|++++ .++.+. ...++...+||..+++.+.+++.+++. +..+. . ...++.+. +
T Consensus 195 Ttd~~v~--~~~~~~-~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~-------~~i~~g~~---------~- 249 (355)
T 3js6_A 195 TTIIDTY--QNMKRV-EEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P-------RMIEKGLE---------Y- 249 (355)
T ss_dssp CEEEEEE--ETTEEC-GGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHSCCC-----------
T ss_pred cEEEEEE--cCCEEc-cccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H-------HHHhcCCc---------c-
Confidence 9999998 344431 112334679999999999999887642 11111 1 11111110 0
Q ss_pred ccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHH--HHHHHHHHhCCC
Q 005807 328 LPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPK--VQEIVTEIFGKS 405 (676)
Q Consensus 328 i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~--i~~~l~~~fg~~ 405 (676)
.....+ ..-.+.+ .+.+++.+++++++|.+.|++.+.+ +..++.|+|+||++.++. |.+.+++.|+..
T Consensus 250 ---~~~~~~--~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~ 319 (355)
T 3js6_A 250 ---KQCKLN--QKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA 319 (355)
T ss_dssp -----------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC
T ss_pred ---cccccc--ccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC
Confidence 000000 0001122 3456677777777777777777754 356799999999999998 899999988542
Q ss_pred CCCCCCcchhHhhHHHHHhhhccC
Q 005807 406 PSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 406 ~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
.||.+|+|.|+..++..+.+
T Consensus 320 ----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 320 ----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp ----SSGGGHHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHh
Confidence 89999999999999887653
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-16 Score=161.42 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=138.7
Q ss_pred CeEEEEeCCCCCH--HHHHHHHHHHHHc--------C------CCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeE
Q 005807 187 SEAVITVPAYFND--AQRQATKDAGRIA--------G------LDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFD 250 (676)
Q Consensus 187 ~~~VITVPa~~~~--~qr~~l~~Aa~~A--------G------l~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~D 250 (676)
..+++++|..+.. .+|+.+++....- | +..+.+++||.+|.+.+....+...++|+|+||||+|
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd 185 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMG 185 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEE
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcchhhccCCEEEEEeCCCcEE
Confidence 3789999977663 3677777766521 1 1346789999998887643333349999999999999
Q ss_pred EEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHH-HhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeecc
Q 005807 251 VSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVS-EFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLP 329 (676)
Q Consensus 251 vsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~ 329 (676)
++++. ++.+ +...++...+||.++++.+.+++.. + ++..+.. ..+|++|+. . ...
T Consensus 186 ~~v~~--~g~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~----~g~~i~~---------~~~e~i~~~-g---~~~---- 241 (329)
T 4apw_A 186 FSLYR--NCVV-NPSERFIEEHGVKDLIIRVGDALTDLN----NGNLITN---------EQAESALNN-G---YMK---- 241 (329)
T ss_dssp EEEEE--TTEE-CGGGCEEESCCHHHHHHHHHTSSSSCS----SCSCTTS---------BTTTTCSSS-C---SSC----
T ss_pred EEEEE--CCEE-eeccccchhhHHHHHHHHHHHHHHhhc----cCCCCCH---------HHHHHHHhc-C---Ccc----
Confidence 99987 4443 2222345779999999999987765 3 3333322 123333332 0 000
Q ss_pred ccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCC
Q 005807 330 FITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKG 409 (676)
Q Consensus 330 ~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~ 409 (676)
.. .++ ..+..+.+++.++++++.|.+.+++. +.+++.++.|+|+||++.+ +.+.|++.|+.++...
T Consensus 242 -~g------~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~~~v~v~ 307 (329)
T 4apw_A 242 -KG------GEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYPNNSIIT 307 (329)
T ss_dssp -EE------CTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHSTTCEECC
T ss_pred -cC------Ccc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcCCCCEec
Confidence 00 111 13456777777777777777777665 3445568999999999988 6799999999777788
Q ss_pred CCcchhHhhHHHHHhhh
Q 005807 410 VNPDEAVALGAAIQGGI 426 (676)
Q Consensus 410 ~~p~~aVa~GAal~a~~ 426 (676)
.||..|+|.|+..++..
T Consensus 308 ~~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 308 NNSQWTTCEGLYKVAVA 324 (329)
T ss_dssp SSGGGHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhh
Confidence 99999999999988764
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-14 Score=156.06 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=121.0
Q ss_pred CceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccC---CcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCC
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK---GELLVGTPAKRQAVTNPANTLFGTKRLIGRRFN 129 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~---~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~ 129 (676)
...|+||+||.++++++..++.|.++ +||+|+.... ...+||..|.... +.+ ..+
T Consensus 23 ~~~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~~---r~~--l~l--------- 80 (498)
T 3qb0_A 23 VSAVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGIP---RKD--YEL--------- 80 (498)
T ss_dssp BSCEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGSC---CTT--EEE---------
T ss_pred CCeEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhcC---cCc--eEE---------
Confidence 35799999999999998766656655 4999998542 2467887532210 100 000
Q ss_pred CHHHHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCC--CC-eEEEEeCCCCCHHHHHHHH
Q 005807 130 DAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKS--VS-EAVITVPAYFNDAQRQATK 206 (676)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~--~~-~~VITVPa~~~~~qr~~l~ 206 (676)
..|+ .+|...+ -+....+++|+... .++.. -. .++||.|.......|+.|.
T Consensus 81 ---------~~Pi-------------~~GvI~d-wd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~Re~~~ 134 (498)
T 3qb0_A 81 ---------KPII-------------ENGLVID-WDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENRKKSL 134 (498)
T ss_dssp ---------EESE-------------ETTEESC-HHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHHHHHH
T ss_pred ---------eccC-------------cCCEEcc-HHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHHHHHH
Confidence 0111 1223223 34445555655532 33321 23 5899999999999999998
Q ss_pred HHH-HHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHH
Q 005807 207 DAG-RIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFL 285 (676)
Q Consensus 207 ~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l 285 (676)
+.+ +.+|++.+.++.+|.+|+++++.. +-||+|+|+|+++++.+. +|.. +........+||+++|+.|.++|
T Consensus 135 eilFE~f~vpav~l~~~~vlalya~G~~----tglVVDiG~g~T~vvPI~--~G~~-l~~ai~rl~vgG~~lt~~L~~lL 207 (498)
T 3qb0_A 135 EVLLEGMQFEACYLAPTSTCVSFAAGRP----NCLVVDIGHDTCSVSPIV--DGMT-LSKSTRRNFIAGKFINHLIKKAL 207 (498)
T ss_dssp HHHHTTSCCSEEEEEEHHHHHHHHHTCS----SEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCeEeecchHHHHHHHcCCC----eEEEEEcCCCcEEEEEEe--CCEE-ccccceeccccHHHHHHHHHHHH
Confidence 875 889999999999999999988763 349999999999999864 3321 11111125799999999999998
Q ss_pred HH
Q 005807 286 VS 287 (676)
Q Consensus 286 ~~ 287 (676)
..
T Consensus 208 ~~ 209 (498)
T 3qb0_A 208 EP 209 (498)
T ss_dssp TT
T ss_pred Hh
Confidence 64
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-15 Score=161.05 Aligned_cols=242 Identities=15% Similarity=0.106 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCC--CCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEeeChhHHHHHhccccCC----CC
Q 005807 165 QIGAFVLTKMKETAESYLGKS--VSEAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAAALSYGMNNK----EG 237 (676)
Q Consensus 165 ev~a~~L~~l~~~a~~~l~~~--~~~~VITVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~----~~ 237 (676)
+....+++|+.. +.++.. -..+++|.|...+...|+.+.+.+ +..|++.+.++.+|.+|+++.+.... ..
T Consensus 103 d~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~ 179 (427)
T 3dwl_A 103 DHMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSL 179 (427)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCC
T ss_pred HHHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCCc
Confidence 344445554432 334432 247999999999999999998887 78999999999999999999885421 13
Q ss_pred eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHH
Q 005807 238 LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIE 317 (676)
Q Consensus 238 ~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 317 (676)
+-||+|+|+|+|+++.+. +|..- ........+||+++|+.|.++|..+... ..-...+|.+|+.
T Consensus 180 tglVVDiG~g~T~v~PV~--~G~~l-~~~~~rl~~gG~~lt~~L~~lL~~~~~~-------------~~~~~~~~~IKe~ 243 (427)
T 3dwl_A 180 TGTVVDSGDGVTHIIPVA--EGYVI-GSSIKTMPLAGRDVTYFVQSLLRDRNEP-------------DSSLKTAERIKEE 243 (427)
T ss_dssp CEEEEEESSSCEEEEEEE--TTEEC-GGGCEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHHH
T ss_pred eEEEEECCCCceEEEEEE--CCEEe-hhhheeccccHHHHHHHHHHHHHHcCCC-------------chhHHHHHHHHHh
Confidence 679999999999999972 33211 0011124799999999999988655421 0112456777777
Q ss_pred cCCCCce---ee--------ecccccc-CCCCCeeeEEEEcHHHH---HHHHhHH------HHHHHHHHHHHHHHcCCCc
Q 005807 318 LSSTSQT---EI--------NLPFITA-DASGAKHLNITLTRSKF---ETLVNHL------IERTKAPCKNCLKDANITI 376 (676)
Q Consensus 318 Ls~~~~~---~~--------~i~~~~~-~~~g~~~~~~~itr~~f---e~~~~~~------v~~i~~~i~~~l~~~~~~~ 376 (676)
++..... ++ .+....- ..+| ....+.+..++| |-+++|- ...|.+.|.+.+.++..+.
T Consensus 244 ~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g-~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dl 322 (427)
T 3dwl_A 244 CCYVCPDIVKEFSRFDREPDRYLKYASESITG-HSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDV 322 (427)
T ss_dssp HCCCCSCHHHHHHHTTC-----CCBCC----------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHH
T ss_pred cCcccCCHHHHHHHhhcCccccceeEeeCCCC-CeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHH
Confidence 6643211 00 0000000 0011 223456666665 3445552 2457777778777654321
Q ss_pred --CCCcEEEEEcCCcCcHHHHHHHHHHhC----------------------CCCCCCCCcchhHhhHHHHHhhh
Q 005807 377 --KDVDEVLLVGGMTRVPKVQEIVTEIFG----------------------KSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 377 --~~i~~ViLvGG~s~~p~i~~~l~~~fg----------------------~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
.-...|+|+||+|.+|.+.++|++.+. .++..+.++..++=.|++++|..
T Consensus 323 r~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl 396 (427)
T 3dwl_A 323 RKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQT 396 (427)
T ss_dssp HHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHS
T ss_pred HHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccc
Confidence 113679999999999999999887651 11223457788999999999874
|
| >3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-14 Score=124.07 Aligned_cols=103 Identities=13% Similarity=0.217 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhcCCCHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHH
Q 005807 573 ERKTLIDIRNNADTTIYSIEKSLGE--YREKIPGEVAKEIEDAVSDLRKAMAGED---IDGIKAKLDAANKAVSKIGQHM 647 (676)
Q Consensus 573 ~~~~~~~~~n~le~~i~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~L~~~~~~i~~~~ 647 (676)
++|+++++||.||+|||.+++.|.+ +.++++++++++|...|+++++||+.++ .++|+.++++|++.+.+|++++
T Consensus 3 ~~re~ieakN~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999976 8899999999999999999999998864 8999999999999999999999
Q ss_pred hcCCCCCCC---CCCCCCCCCCCcccceecC
Q 005807 648 AGGSSDNSA---SGGSQGGDQAPEAEYEEVK 675 (676)
Q Consensus 648 ~~~~~~~~~---~g~~~~~~~~~~~~~~~~~ 675 (676)
|+++++++. +|+.+++++..+|+.|||+
T Consensus 83 y~~~~~~~~~~~~~~~~~~~~~~gp~~eevd 113 (113)
T 3lof_A 83 YQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD 113 (113)
T ss_dssp HHC----------------------------
T ss_pred HHhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 986432211 1222223345688999984
|
| >2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-14 Score=125.63 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhcCCCHHHHHHHHHHHHHHHHhhccC---ChHHHHHHHHHHHHHHHHHHHHHh
Q 005807 574 RKTLIDIRNNADTTIYSIEKSLGE--YREKIPGEVAKEIEDAVSDLRKAMAGE---DIDGIKAKLDAANKAVSKIGQHMA 648 (676)
Q Consensus 574 ~~~~~~~~n~le~~i~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~L~~~~~~i~~~~~ 648 (676)
+|+++++||.+|+|||.+++.|.+ +.+++++++|++|...|+++++||+++ +.++|+.++++|++.+.+|..++|
T Consensus 13 ~re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 13 GLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999976 788999999999999999999999865 689999999999999999999999
Q ss_pred cCCCCCCCC-CCCCCCCCCCcccceecC
Q 005807 649 GGSSDNSAS-GGSQGGDQAPEAEYEEVK 675 (676)
Q Consensus 649 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~ 675 (676)
+++++++++ |+.+++++.++++.|||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~ee~d 120 (120)
T 2p32_A 93 QSAGGAPPGAAPGGAAGGAGGPTIEEVD 120 (120)
T ss_dssp CC--------------------------
T ss_pred HhccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 654433332 333334445678888885
|
| >1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=114.06 Aligned_cols=99 Identities=13% Similarity=0.220 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhhcCCCHHHHHHHHHHHHHHHHhhccC---ChHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005807 577 LIDIRNNADTTIYSIEKSLG--EYREKIPGEVAKEIEDAVSDLRKAMAGE---DIDGIKAKLDAANKAVSKIGQHMAGGS 651 (676)
Q Consensus 577 ~~~~~n~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~L~~~~~~i~~~~~~~~ 651 (676)
++++||.+|+|||.+++.|. ++.+++++++|++|...|+++++||+.+ +.++|+.++++|++.+.+|..++|+.+
T Consensus 2 l~EarN~aE~~iy~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~~~~ 81 (113)
T 1ud0_A 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSA 81 (113)
T ss_dssp --CCHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999999997 6888999999999999999999999854 588999999999999999999999644
Q ss_pred CCCCCC--CC------CCCCCCCCcccceecC
Q 005807 652 SDNSAS--GG------SQGGDQAPEAEYEEVK 675 (676)
Q Consensus 652 ~~~~~~--g~------~~~~~~~~~~~~~~~~ 675 (676)
++++++ |+ .+++++.+++..|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~d 113 (113)
T 1ud0_A 82 GGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 113 (113)
T ss_dssp CCCCCC--------------------------
T ss_pred cCCCCCCCCCCCCcccCCCCCCCCCCCcccCC
Confidence 332221 22 2222334578888875
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-12 Score=137.06 Aligned_cols=196 Identities=20% Similarity=0.213 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHc-CC--CeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchH
Q 005807 200 AQRQATKDAGRIA-GL--DVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGE 275 (676)
Q Consensus 200 ~qr~~l~~Aa~~A-Gl--~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~ 275 (676)
.+-+.+.+|.+.+ || ++-. .||.||++++..+...+ .+.++||||||||++++.-..-.+ ......||+
T Consensus 368 ~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~-----a~~ip~gG~ 440 (610)
T 2d0o_A 368 LQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII-----ATHLAGAGD 440 (610)
T ss_dssp CCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE-----EEEEECSHH
T ss_pred HHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccchH
Confidence 4478899999999 99 6655 99999999988776656 899999999999999965443332 233678999
Q ss_pred HHHHHHHHHHHHH-hhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC----------Cceeeec--cccccCCCCCe---
Q 005807 276 DFDNALLEFLVSE-FKRTERIDLSQDKLALQRLRESAEKAKIELSST----------SQTEINL--PFITADASGAK--- 339 (676)
Q Consensus 276 ~~D~~l~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~~~~~~i--~~~~~~~~g~~--- 339 (676)
+++..|..-|.-. + ..||++|. .... +...+.+ +.+....-. .
T Consensus 441 ~VT~DIA~~Lgt~d~-------------------~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~-Rv~~ 499 (610)
T 2d0o_A 441 MVTMIIARELGLEDR-------------------YLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFA-RVCV 499 (610)
T ss_dssp HHHHHHHHHHTCCCH-------------------HHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTT-CEEE
T ss_pred HHHHHHHHHhCCCCH-------------------HHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceee-eeec
Confidence 9999887765432 2 57899998 5432 1122333 222211000 1
Q ss_pred ---eeEEEEcHHH--HHHHHhHHHHHHHHH--HHHHHHHcCC-----CcCCCcEEEEEcCCcCcHHHHHHHHHHhCC-CC
Q 005807 340 ---HLNITLTRSK--FETLVNHLIERTKAP--CKNCLKDANI-----TIKDVDEVLLVGGMTRVPKVQEIVTEIFGK-SP 406 (676)
Q Consensus 340 ---~~~~~itr~~--fe~~~~~~v~~i~~~--i~~~l~~~~~-----~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~-~~ 406 (676)
..-..| +.+ +|+ ++-+-+++.+. +.+.|+..+. ...+|..|+|+||+|.++.+.++.++.|+. ++
T Consensus 500 ~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~V 577 (610)
T 2d0o_A 500 VKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRL 577 (610)
T ss_dssp ECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSC
T ss_pred ccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCe
Confidence 112355 566 776 55555554444 2334554332 245679999999999999999999999987 43
Q ss_pred C-------CCCCcchhHhhHHHHHhh
Q 005807 407 S-------KGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 407 ~-------~~~~p~~aVa~GAal~a~ 425 (676)
. ....|..|+|.|.+++.+
T Consensus 578 RiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 578 VAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp EEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred EEecCCccccCCCcHHHHHHHHHHHh
Confidence 2 245899999999998764
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-12 Score=135.97 Aligned_cols=194 Identities=19% Similarity=0.213 Sum_probs=134.0
Q ss_pred HHHHHHHHHHc-CC--CeEEeeChhHHHHHhccccCCCC-eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 005807 202 RQATKDAGRIA-GL--DVQRIINEPTAAALSYGMNNKEG-LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDF 277 (676)
Q Consensus 202 r~~l~~Aa~~A-Gl--~~~~li~Ep~AAal~y~~~~~~~-~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 277 (676)
-+.+.+|.+.+ || ++-. .||.||++++..+...+ .+.++||||||||++++.-..-.+ ......||+++
T Consensus 372 m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~-----a~~ip~gG~~V 444 (607)
T 1nbw_A 372 MQVIARELSARLQTEVVVGG--VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT-----AVHLAGAGNMV 444 (607)
T ss_dssp SCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE-----EEEEECCHHHH
T ss_pred HHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccchHHH
Confidence 56688899999 99 5544 99999999988776656 899999999999999975444332 33367899999
Q ss_pred HHHHHHHHHHH-hhhhccCCCccCHHHHHHHHHHHHHHHHHcCCC----------Cceeeec--cccccCCCCCe-----
Q 005807 278 DNALLEFLVSE-FKRTERIDLSQDKLALQRLRESAEKAKIELSST----------SQTEINL--PFITADASGAK----- 339 (676)
Q Consensus 278 D~~l~~~l~~~-~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------~~~~~~i--~~~~~~~~g~~----- 339 (676)
+..|..-|.-. + ..||++|. .... +...+.+ +.+....-. .
T Consensus 445 T~DIA~~Lg~~d~-------------------~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~-R~~~~~ 503 (607)
T 1nbw_A 445 SLLIKTELGLEDL-------------------SLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFA-KVVYIK 503 (607)
T ss_dssp HHHHHHHHTCSCH-------------------HHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTT-CEEEEE
T ss_pred HHHHHHHhCCCCH-------------------HHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceee-eeeccc
Confidence 99887765432 2 57899998 5432 1122333 222211000 1
Q ss_pred -eeEEEEcHHH--HHHHHhHHHHHHHHH--HHHHHHHcCCC-----cCCCcEEEEEcCCcCcHHHHHHHHHHhCC-CCC-
Q 005807 340 -HLNITLTRSK--FETLVNHLIERTKAP--CKNCLKDANIT-----IKDVDEVLLVGGMTRVPKVQEIVTEIFGK-SPS- 407 (676)
Q Consensus 340 -~~~~~itr~~--fe~~~~~~v~~i~~~--i~~~l~~~~~~-----~~~i~~ViLvGG~s~~p~i~~~l~~~fg~-~~~- 407 (676)
..-..| +.+ +|+ ++-+-+++.+. +...|+..+.. ..+|..|+|+||+|.++.+.++.++.|+. ++.
T Consensus 504 ~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRi 581 (607)
T 1nbw_A 504 EGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVA 581 (607)
T ss_dssp TTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEE
T ss_pred ccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEE
Confidence 112345 556 776 55555555543 45557776542 34679999999999999999999999976 321
Q ss_pred ------CCCCcchhHhhHHHHHhh
Q 005807 408 ------KGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 408 ------~~~~p~~aVa~GAal~a~ 425 (676)
....|..|+|.|.+++.+
T Consensus 582 GrP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 582 GQGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp EECCGGGTSCSCCHHHHHHHHHHH
T ss_pred ecCCccccCCchHHHHHHHHHhhh
Confidence 245899999999998643
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-11 Score=133.78 Aligned_cols=111 Identities=17% Similarity=0.272 Sum_probs=82.6
Q ss_pred HHHHHHHHH-HHhCCCCC-----eEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEeeChhHHHHHhccccCCCCeEEEEe
Q 005807 171 LTKMKETAE-SYLGKSVS-----EAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFD 243 (676)
Q Consensus 171 L~~l~~~a~-~~l~~~~~-----~~VITVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D 243 (676)
+..|.+++- .+|+.... .+++|.|..++...|+.|.+. .+..|++.+.++.++.+|++++|.. +-+|||
T Consensus 177 ~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~----tglVVD 252 (593)
T 4fo0_A 177 IEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS----STCIVD 252 (593)
T ss_dssp HHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS----EEEEEE
T ss_pred HHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC----ceEEEE
Confidence 344555543 45665443 499999999999999888666 5678999999999999999988754 569999
Q ss_pred eCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHH
Q 005807 244 LGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSE 288 (676)
Q Consensus 244 ~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 288 (676)
+|.+.|.++-+. +|..- ........+||.++++.|.++|..+
T Consensus 253 iG~~~T~v~PV~--dG~~l-~~~~~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 253 VGDQKTSVCCVE--DGVSH-RNTRLCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp ECSSCEEEEEEE--SSCBC-GGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred eCCCceeeeeeE--CCEEe-hhheEEecccHHHHHHHHHHHHHhc
Confidence 999999988754 33210 0011125799999999999988754
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-07 Score=95.33 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=56.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 351 ETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
++++..+++.+...+.+.++..+. .+.|+++||.+++|.+++.+++.++.++..+.++..+.|+|||++|...
T Consensus 185 ~di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 185 IDIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 444555555555555555554321 3789999999999999999999999988888889889999999998753
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-07 Score=99.71 Aligned_cols=202 Identities=13% Similarity=0.154 Sum_probs=108.5
Q ss_pred HHHHHHcCC----CeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE---e-CC-eEEE------EEecCCC
Q 005807 206 KDAGRIAGL----DVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI---S-NG-VFEV------KATNGDT 270 (676)
Q Consensus 206 ~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~---~-~~-~~~v------~~~~g~~ 270 (676)
.++++..|| +++.-..+..||+++.+.... ..+++=+|-+++-..+..- . .+ .+.. ....+..
T Consensus 219 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~--g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 296 (504)
T 3ll3_A 219 TEYVKKLGIDSDTKIILGASDGYLSTIGVNAIDS--DHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLGGPV 296 (504)
T ss_dssp HHHHHHHTCCTTCEEEEEEEHHHHHHHTTTCCST--TEEEEEESSSEEEEEEESSCCCCTTCCSEEEEEETTEEEEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEccHHHHHHHhCCCCCC--CcEEEEechhhhheeeCCCcccCCCCceEEEEeCCCeEEEEeeh
Confidence 345565555 577778888899988775543 2344455555543333210 0 01 1110 0011224
Q ss_pred CcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCC-----CCee----e
Q 005807 271 FLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADAS-----GAKH----L 341 (676)
Q Consensus 271 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~-----g~~~----~ 341 (676)
+.||..+ +|+.+.+.... .. ...+...+++ ........+.+|++..... .... +
T Consensus 297 ~~~G~~~-----~W~~~~~~~~~-----~~---~~~~~~~a~~----~~~g~~gl~~~P~~~Ger~P~~d~~arg~~~Gl 359 (504)
T 3ll3_A 297 NNGGIVF-----NWARQTLFDAD-----ET---PQDFLDVAQT----APAGSRNLIFLPYLGGERAPIWDANARGSFVGL 359 (504)
T ss_dssp SCSHHHH-----HHHHHHHTCTT-----CC---HHHHHHHHHT----SCTTGGGCEEECCTTCBCTTTCBTTCCEEEEEE
T ss_pred hhHHHHH-----HHHHHHhccch-----hH---HHHHHHHHhc----CCCCCCCeEEecCccCCCCCCCCCccCeEEECC
Confidence 5567644 57777664211 01 1122222221 1222344456666542211 0011 1
Q ss_pred EEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 342 NITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 342 ~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
+..-++.+| ++-+++.+.-.++..++...-....++.|.++||+++++.+.+++.+.||.++.. ..+.++.|+|||
T Consensus 360 ~~~~~~~~l---~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~-~~~~e~~alGaA 435 (504)
T 3ll3_A 360 TRMHQKPEM---ARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVT-MKEQQSGTLAAM 435 (504)
T ss_dssp CTTCCHHHH---HHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHHTSCEEE-ESCSCHHHHHHH
T ss_pred CCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhhCCeEEe-cCCCCchhHHHH
Confidence 122345554 4444444444444443332111135799999999999999999999999997755 446779999999
Q ss_pred HHhhhccCC
Q 005807 422 IQGGILRGD 430 (676)
Q Consensus 422 l~a~~l~~~ 430 (676)
+.|+.-.+.
T Consensus 436 ~lA~~a~G~ 444 (504)
T 3ll3_A 436 FLARQALGL 444 (504)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHcCc
Confidence 999876554
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.3e-07 Score=98.20 Aligned_cols=206 Identities=16% Similarity=0.155 Sum_probs=112.5
Q ss_pred HHHHHHcCC----CeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEE-E---e-C-CeEEEEEe--------c
Q 005807 206 KDAGRIAGL----DVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLE-I---S-N-GVFEVKAT--------N 267 (676)
Q Consensus 206 ~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~-~---~-~-~~~~v~~~--------~ 267 (676)
.++++..|| +++.-..+..||+++.+....+. +++-+|-+++-..+.. - . . +.+..... .
T Consensus 223 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (511)
T 3hz6_A 223 ALAARQTGFVSGTPVLCGLGDAGAATLGVGVLDDED--AYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQV 300 (511)
T ss_dssp HHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCSTTC--EEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSSTTEEEEE
T ss_pred HHHHHhhCCCCCCeEEEECchHHHHHHhCCCCCCCc--EEEEecchhhheeecCCeecccCCCCceEEEEEecCCceEEE
Confidence 355666565 46667788888888877654332 4444566555444433 1 1 1 11111110 0
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCC-----Ce---
Q 005807 268 GDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASG-----AK--- 339 (676)
Q Consensus 268 g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g-----~~--- 339 (676)
+....||. .++|+.+.|... .. . .+..|.+.+++..... ......+.+|++...... ..
T Consensus 301 g~~~~~G~-----~~~W~~~~~~~~--~~--~---~~~~l~~~a~~~~~g~-~~~~gl~~~P~~~Ger~P~~d~~arg~~ 367 (511)
T 3hz6_A 301 APVLNAGN-----ILQWALTLVGHR--PG--E---DCAEYFHMAAAEVQGV-TVPDGLLFVPYLHAERCPVELPAPRGAL 367 (511)
T ss_dssp EEESSSHH-----HHHHHGGGGTCC--TT--S---CSHHHHHHHHHHHTTC-CCCTTCEEEEESSCBCSSSCBSSCEEEE
T ss_pred eehhhHHH-----HHHHHHHHhccc--cc--c---cHHHHHHHHHhCCCCC-CCCCCEEEeCCCCCCCCCCCCCccceEE
Confidence 22344553 456766655310 00 0 1334445555543220 002333455554322110 01
Q ss_pred -eeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhh
Q 005807 340 -HLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVAL 418 (676)
Q Consensus 340 -~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~ 418 (676)
.++..-++.+| ++-+++.+.-.++..++...- .. ++.|.++||+++++.+.+++.+.||.++.....+.++.|+
T Consensus 368 ~Gl~~~~~~~~l---~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~~~e~~al 442 (511)
T 3hz6_A 368 LGVTGATTRAQI---LLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLR 442 (511)
T ss_dssp ECCCTTCCHHHH---HHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEECCCGGGHHHH
T ss_pred EcCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEecCCCCchHH
Confidence 11222345554 455555555555555544332 34 7899999999999999999999999987234458899999
Q ss_pred HHHHHhhhccCCC
Q 005807 419 GAAIQGGILRGDV 431 (676)
Q Consensus 419 GAal~a~~l~~~~ 431 (676)
|||+.|+.-.+..
T Consensus 443 GaA~lA~~a~G~~ 455 (511)
T 3hz6_A 443 GLAALAAVELEWS 455 (511)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCc
Confidence 9999998766643
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=97.71 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=57.3
Q ss_pred EcHHHHHHHH-hHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 345 LTRSKFETLV-NHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 345 itr~~fe~~~-~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
-+|.+|-..+ +.+.-.+...++..-+..+. .++.|.++||+++++.+.+++.+.||.++..+ ...|+.|+|||+.
T Consensus 371 ~~~~~i~RAvlEgia~~~r~~le~l~~~~g~---~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~-~~~E~~alGAA~l 446 (526)
T 3ezw_A 371 VNANHIIRATLESIAYQTRDVLEAMQADSGI---RLHALRVDGGAVANNFLMQFQSDILGTRVERP-EVREVTALGAAYL 446 (526)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEECchhhCHHHHHHHHHHHCCEEEeC-CCCchHHHHHHHH
Confidence 4465553222 22222333333333334554 46899999999999999999999999877554 4568899999999
Q ss_pred hhhccCCCc
Q 005807 424 GGILRGDVK 432 (676)
Q Consensus 424 a~~l~~~~~ 432 (676)
|+.-.|..+
T Consensus 447 A~~a~G~~~ 455 (526)
T 3ezw_A 447 AGLAVGFWQ 455 (526)
T ss_dssp HHHHTTSSS
T ss_pred HHHHhCCCC
Confidence 998766443
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=97.12 Aligned_cols=200 Identities=21% Similarity=0.242 Sum_probs=105.7
Q ss_pred HHHHHHcCC----CeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE---eCCeEEEEEe--------cCCC
Q 005807 206 KDAGRIAGL----DVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI---SNGVFEVKAT--------NGDT 270 (676)
Q Consensus 206 ~~Aa~~AGl----~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~---~~~~~~v~~~--------~g~~ 270 (676)
.++++..|| +++.-..+..||+++.+....+ .+++=+|-+++-..+..- ... +..... .+..
T Consensus 225 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~~g--~~~~s~GTs~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~g~~ 301 (508)
T 3ifr_A 225 AEAAALTGLPTGLPVYGGAADHIASALAAGITRPG--DVLLKFGGAGDIIVASATAKSDPR-LYLDYHLVPGLYAPNGCM 301 (508)
T ss_dssp HHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCSTT--EEEEEESSSEEEEECBSCCCCBTT-BBCCBCSSTTCBCCEEEE
T ss_pred HHHHHHhCCCCCCeEEEECchHHHHHHhCCCCCCC--cEEEEechhhhheeeCCCcccCCC-cceeeeecCCceEEechh
Confidence 356666665 4666677888888887765432 344445555544333210 111 000000 1112
Q ss_pred CcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCC--------CC-Ceee
Q 005807 271 FLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADA--------SG-AKHL 341 (676)
Q Consensus 271 ~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~--------~g-~~~~ 341 (676)
..||. .++|+.+.|.. .+. + ..+..|.+.+++ ........+.+|++.... .| ...+
T Consensus 302 ~~~G~-----~~~W~~~~~~~-~~~----~-~~~~~l~~~a~~----~~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl 366 (508)
T 3ifr_A 302 AATGS-----ALNWLAKLLAP-EAG----E-AAHAQLDALAAE----VPAGADGLVCLPYFLGEKTPIHDPFASGTFTGL 366 (508)
T ss_dssp SSSHH-----HHHHHHHHHST-TCT----T-HHHHHHHHHHHT----SCTTGGGCEEECCTTCCC----CCCCCCEEESC
T ss_pred hhhHH-----HHHHHHHHHhh-cCC----C-CCHHHHHHHHhc----CCCCCCCeEEecCCCCCCCCCCCCCcCEEEECC
Confidence 33443 45567666630 011 0 013334333332 122234445566543211 11 0111
Q ss_pred EEEEcHHHHHHHHhHHHHHHHHHH---HHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhh
Q 005807 342 NITLTRSKFETLVNHLIERTKAPC---KNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVAL 418 (676)
Q Consensus 342 ~~~itr~~fe~~~~~~v~~i~~~i---~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~ 418 (676)
+..-++.+|- +-+++.+.-.+ -+.|++.+. .++.|.++||+++++.+.+++.+.||.++..+.. .++.|+
T Consensus 367 ~~~~~~~~l~---rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~al 439 (508)
T 3ifr_A 367 SLSHTRGHLW---RALLEAVALAFRHHVAVLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAV 439 (508)
T ss_dssp CTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHH
T ss_pred CCCCCHHHHH---HHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHH
Confidence 1223565553 33333333332 234444453 4689999999999999999999999998765543 568899
Q ss_pred HHHHHhhhccCC
Q 005807 419 GAAIQGGILRGD 430 (676)
Q Consensus 419 GAal~a~~l~~~ 430 (676)
|||+.|+.-.+.
T Consensus 440 GaA~lA~~a~G~ 451 (508)
T 3ifr_A 440 GAAWVAAIGGGD 451 (508)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHhCC
Confidence 999999876553
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.3e-06 Score=90.77 Aligned_cols=195 Identities=17% Similarity=0.168 Sum_probs=103.3
Q ss_pred HcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEE-E---E-eCCeEEE----------EEecCCCCcchH
Q 005807 211 IAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVL-E---I-SNGVFEV----------KATNGDTFLGGE 275 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~-~---~-~~~~~~v----------~~~~g~~~lGG~ 275 (676)
..|.+++....+-.||+++.+....+. +++=+|-+++-+... . . ..+.+.. ....+....||.
T Consensus 255 ~~g~pV~~g~~D~~aa~~g~g~~~~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~ 332 (520)
T 4e1j_A 255 GAAIPILGVAGDQQAATIGQACFKPGM--LKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFVAGA 332 (520)
T ss_dssp TSCCBEEEECCHHHHHHHHTTCCSTTC--EEEEESSSEEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESCSHH
T ss_pred CCCCeEEEECCcHHHHHHhCCCCCCCc--EEEEecCchheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhhHHH
Confidence 468899988999999999887654432 333445443322221 0 0 0111110 111222345555
Q ss_pred HHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCC--------CC-CeeeEEEEc
Q 005807 276 DFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADA--------SG-AKHLNITLT 346 (676)
Q Consensus 276 ~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~--------~g-~~~~~~~it 346 (676)
.++|+.+.+... . ....+.+.++.. . .....+.+|++.... .| ...++..-+
T Consensus 333 -----~~~W~~~~~~~~------~---~~~~l~~~a~~~----~-~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~~ 393 (520)
T 4e1j_A 333 -----AVQWLRDGLKVI------K---AAPDTGSLAESA----D-PSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTG 393 (520)
T ss_dssp -----HHHHHHHTTCCC--------------CHHHHHTS----C-TTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTCC
T ss_pred -----HHHHHHHHcCCc------c---cHHHHHHHHhcC----C-CCCcEEEEcCccCCCCCCCCCCCCEEEecccCCCC
Confidence 566777665311 0 011222222221 1 233445567653221 11 011222234
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH---HHHcCC-CcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHH
Q 005807 347 RSKFETLVNHLIERTKAPCKNC---LKDANI-TIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 347 r~~fe~~~~~~v~~i~~~i~~~---l~~~~~-~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal 422 (676)
|.+|- +-+++.+.-.++.+ |++.+. .. .++.|.++||+++++.+.+++.+.||.++.. ..+.++.|+|||+
T Consensus 394 ~~~l~---RAvlEgia~~~r~~l~~l~~~~~~~g-~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~-~~~~e~~alGAA~ 468 (520)
T 4e1j_A 394 PAEFA---RAALEAVCYQTRDLLEAMHKDWRRNG-NDTVLRVDGGMVASDWTMQRLSDLLDAPVDR-PVILETTALGVAW 468 (520)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHCC------CCEEEESGGGGCHHHHHHHHHHHTSCEEE-ESCCCHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHhhccCC-CcceEEEeCccccCHHHHHHHHHHhCCeEEe-cCCCccHHHHHHH
Confidence 65543 34444443333333 333200 01 4689999999999999999999999997764 4467799999999
Q ss_pred HhhhccCCC
Q 005807 423 QGGILRGDV 431 (676)
Q Consensus 423 ~a~~l~~~~ 431 (676)
.|+.-.+..
T Consensus 469 lA~~a~G~~ 477 (520)
T 4e1j_A 469 LAGSRAGVW 477 (520)
T ss_dssp HHHHHHTSS
T ss_pred HHHHHcCCc
Confidence 999766643
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=93.68 Aligned_cols=77 Identities=22% Similarity=0.413 Sum_probs=55.4
Q ss_pred cHHHHHHHHhHHHHHHHHHHHH---HHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHH
Q 005807 346 TRSKFETLVNHLIERTKAPCKN---CLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAI 422 (676)
Q Consensus 346 tr~~fe~~~~~~v~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal 422 (676)
++.+| ++-+++.+.-.++. .|++.+. .++.|+++||+++++.+.+++.+.||.++.. ..+.++.|+|||+
T Consensus 395 ~~~~l---~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~-~~~~e~~alGAA~ 467 (515)
T 3i8b_A 395 TRENL---ARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGMDVTR-PATDEYVAIGAAR 467 (515)
T ss_dssp SHHHH---HHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEE-ECCCCHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCCceEe-cCCcccHHHHHHH
Confidence 55554 44444444333333 4444443 4689999999999999999999999987655 4466789999999
Q ss_pred HhhhccC
Q 005807 423 QGGILRG 429 (676)
Q Consensus 423 ~a~~l~~ 429 (676)
.|+.-.+
T Consensus 468 lA~~a~G 474 (515)
T 3i8b_A 468 QAAWVLS 474 (515)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 9987554
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-05 Score=85.88 Aligned_cols=192 Identities=19% Similarity=0.237 Sum_probs=104.2
Q ss_pred cCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE-----eCCeEEE----------EEecCCCCcchHH
Q 005807 212 AGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI-----SNGVFEV----------KATNGDTFLGGED 276 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~-----~~~~~~v----------~~~~g~~~lGG~~ 276 (676)
.|.+++....+..||+++.+....+. +++=+|-+++-.....- ..+.+.. ....+..+.||.
T Consensus 236 ~g~pV~~g~~D~~aa~~g~g~~~~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~G~- 312 (506)
T 3h3n_X 236 SEVPIAGMAGDQQAALFGQMAFEKGM--IKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAGS- 312 (506)
T ss_dssp CCCEEEEEEEHHHHHHHHTTCCSTTC--EEEEESSSEEEEEEEETCCCSCCTTSEEEEEEEETTEEEEEEEEEECCSSH-
T ss_pred CCCeEEEECCcHHHHHHhCCCCCCCc--EEEEecchheeeeecCCccccCCCceEEEeeeecCCCCEEEEecchhhHHH-
Confidence 68888888889999999887654433 33344544432222110 0111110 111222345665
Q ss_pred HHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCC--------CC-CeeeEEEEcH
Q 005807 277 FDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADA--------SG-AKHLNITLTR 347 (676)
Q Consensus 277 ~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~--------~g-~~~~~~~itr 347 (676)
+++|+.+.+... .+ ...+...++. ... ....+.+|++.... .| ...++..-++
T Consensus 313 ----~~~W~~~~~~~~------~~---~~~l~~~a~~----~~~-~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~ 374 (506)
T 3h3n_X 313 ----AIQWLRDGLRMI------ET---SPQSEELAAK----AKG-DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTK 374 (506)
T ss_dssp ----HHHHHHHTSCCC------SS---TTHHHHHHTT----CCS-CSCCEEECCTTCBCTTTCBTTCCCEEECCCTTCCH
T ss_pred ----HHHHHHHHcCCC------Cc---HHHHHHHHhc----CCC-CCceEEeccccCCCCCccCCCCCEEEEccCCCCCH
Confidence 566777665311 00 1112222211 112 23445566653211 11 0112223356
Q ss_pred HHHHHHHhHHHHHHHHHHHH---HHHH-cCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHH
Q 005807 348 SKFETLVNHLIERTKAPCKN---CLKD-ANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 348 ~~fe~~~~~~v~~i~~~i~~---~l~~-~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~ 423 (676)
.+|- +-+++.+.-.++. .|++ .+. .++.|.++||+++++.+.+++.+.||.++.. ..+.++.|+|||+.
T Consensus 375 ~~l~---RAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~-~~~~e~~alGaA~l 447 (506)
T 3h3n_X 375 EDFV---RATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQR-AANLETTALGAAYL 447 (506)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHCS---CCCEEEEESGGGGCHHHHHHHHHHHTSEEEE-CSSSCHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEecccccCHHHHHHHHHHhCCeEEe-cCCCcchhHHHHHH
Confidence 5553 3344433333333 3333 353 4689999999999999999999999987654 45678999999999
Q ss_pred hhhccCCC
Q 005807 424 GGILRGDV 431 (676)
Q Consensus 424 a~~l~~~~ 431 (676)
|+.-.+..
T Consensus 448 A~~a~G~~ 455 (506)
T 3h3n_X 448 AGLAVGFW 455 (506)
T ss_dssp HHHHTTSS
T ss_pred HHHHhCcc
Confidence 98766543
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.7e-05 Score=85.86 Aligned_cols=128 Identities=15% Similarity=0.232 Sum_probs=91.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEEeCCeEEEEE
Q 005807 187 SEAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEISNGVFEVKA 265 (676)
Q Consensus 187 ~~~VITVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~ 265 (676)
..++||.|..++...|+.|.+.+ +..|++.+.++.+|.+|++++|. ...-+|+|+|+|+|+++.+. +|.. +..
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl---~ttGLVVDiG~g~T~VvPV~--eG~v-l~~ 295 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI---STSTCVVNIGAAETRIACVD--EGTV-LEH 295 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC---SSCEEEEEECSSCEEEEEEE--TTEE-CGG
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC---CCceEEEcCCCceEEEEEEe--CCEE-Ehh
Confidence 46999999999999999998887 56999999999999999999875 12569999999999999863 3321 111
Q ss_pred ecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCcee
Q 005807 266 TNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTE 325 (676)
Q Consensus 266 ~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~ 325 (676)
......+||.++|..|.++|..+--......+.. ..=...++.+|+.++.....+
T Consensus 296 ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t-----~~e~eiVrdIKEk~CyVs~~D 350 (655)
T 4am6_A 296 SAITLDYGGDDITRLFALFLLQSDFPLQDWKIDS-----KHGWLLAERLKKNFTTFQDAD 350 (655)
T ss_dssp GCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTS-----HHHHHHHHHHHHHHCCCCGGG
T ss_pred heeeecchHHHHHHHHHHHHHHcCCCccccCCCC-----cchHHHHHHHHHheEEEcccc
Confidence 1112589999999999999876421000111111 112356788999988774333
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00044 Score=69.63 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=52.4
Q ss_pred cHHHHH-HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcC-CcCcHHHHHHHHHHh---CCCCCCCCCcchhHhhHH
Q 005807 346 TRSKFE-TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGG-MTRVPKVQEIVTEIF---GKSPSKGVNPDEAVALGA 420 (676)
Q Consensus 346 tr~~fe-~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~~p~i~~~l~~~f---g~~~~~~~~p~~aVa~GA 420 (676)
+++++- .++.-+.+++..+...+.+.. .++.|+++|| .+..|.+++.+++.+ +.++..+.+|..+.|.||
T Consensus 208 ~~eDIaasl~~sV~~~I~~la~~~a~~~-----~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGA 282 (287)
T 2ews_A 208 TPSNKLAAVIGVVGEVVTTMAITVAREF-----KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGA 282 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHH
Confidence 454443 333344444444433333443 3467999999 899999999999985 577888999999999999
Q ss_pred HHHh
Q 005807 421 AIQG 424 (676)
Q Consensus 421 al~a 424 (676)
|+.+
T Consensus 283 aL~~ 286 (287)
T 2ews_A 283 LYLE 286 (287)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 9874
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=68.50 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=50.7
Q ss_pred HHHHhHHHHHHHHHHHHHH----HHcCCCcCCCcEEEEEcC-CcCcHHHHHHHHHHhC------CCCCCCCCcchhHhhH
Q 005807 351 ETLVNHLIERTKAPCKNCL----KDANITIKDVDEVLLVGG-MTRVPKVQEIVTEIFG------KSPSKGVNPDEAVALG 419 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l----~~~~~~~~~i~~ViLvGG-~s~~p~i~~~l~~~fg------~~~~~~~~p~~aVa~G 419 (676)
++++..++..+.+.|.... +..+ ++.|+++|| .+..|.+++.|++.++ .++..+.+|..+-|.|
T Consensus 279 eDIa~gll~sVa~~I~~lA~l~A~~~~-----i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlG 353 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVG 353 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHH
Confidence 4445555555554444332 3333 457999999 8999999999999973 5677788999999999
Q ss_pred HHHHh
Q 005807 420 AAIQG 424 (676)
Q Consensus 420 Aal~a 424 (676)
||+.+
T Consensus 354 AaL~~ 358 (360)
T 2i7n_A 354 ALLEL 358 (360)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99975
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.53 Score=48.36 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHh---CCCCCCCC---CcchhHhhHHHHHhhhccC
Q 005807 357 LIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF---GKSPSKGV---NPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 357 ~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f---g~~~~~~~---~p~~aVa~GAal~a~~l~~ 429 (676)
+.+.+.+.+.++++..+ ++.|+|+||.+...++++.|.+.+ |.++..+. -.|.+++.|+|.+.....+
T Consensus 233 l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 233 AFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 44445555566666554 479999999999999999999887 54544332 4577899999876544333
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0022 Score=71.51 Aligned_cols=88 Identities=18% Similarity=0.208 Sum_probs=63.7
Q ss_pred EEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 342 NITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 342 ~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
+..-+|.+|-.+++-+++.+.-.++..++...-....++.|.++||+++++.+.+++.+.||.++..+ ...++.|+|||
T Consensus 406 ~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~-~~~e~~alGAA 484 (554)
T 3l0q_A 406 KLSTTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGCAMLLP-EESEAMLLGSA 484 (554)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEE-SCSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEec-CCCcchHHHHH
Confidence 34457888855455666666555555444322122457899999999999999999999999877554 45679999999
Q ss_pred HHhhhccCC
Q 005807 422 IQGGILRGD 430 (676)
Q Consensus 422 l~a~~l~~~ 430 (676)
+.|+.-.+.
T Consensus 485 ~lA~~a~G~ 493 (554)
T 3l0q_A 485 MMGTVAAGV 493 (554)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHcCC
Confidence 999976553
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0022 Score=70.21 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=57.1
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhh
Q 005807 346 TRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 346 tr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~ 425 (676)
++.++ ++-+++.+.-.++..++........++.|.++||+++++.+.+++.+.||.++..+..++.+.|+|||+.|+
T Consensus 357 ~~~~~---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA~ 433 (484)
T 2itm_A 357 GPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQ 433 (484)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHHH
Confidence 45544 444444444444444433211123568899999999999999999999999887666555568999999998
Q ss_pred hccCC
Q 005807 426 ILRGD 430 (676)
Q Consensus 426 ~l~~~ 430 (676)
.-.+.
T Consensus 434 ~~~g~ 438 (484)
T 2itm_A 434 IAANP 438 (484)
T ss_dssp HHHCT
T ss_pred HHcCC
Confidence 75553
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.81 Score=46.88 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHh---CCCCCCCC---CcchhHhhHHHHHhh
Q 005807 359 ERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF---GKSPSKGV---NPDEAVALGAAIQGG 425 (676)
Q Consensus 359 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f---g~~~~~~~---~p~~aVa~GAal~a~ 425 (676)
+.+.+.+.++.+..+ ++.|+|+||.+....+++.|.+.+ |.++..+. -.|.+++.|+|.+..
T Consensus 230 ~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~ 297 (330)
T 2ivn_A 230 AALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRM 297 (330)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHH
Confidence 334444444444433 579999999999999999999877 55544443 346688888887544
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0032 Score=69.14 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=58.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~ 430 (676)
++++-+++.+.-.++..++...... .++.|.++||+++++.+.+++.+.||.++..+ .+.++.|+|||+.|+.-.+.
T Consensus 368 ~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~~~~g~ 444 (497)
T 2zf5_O 368 HLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRP-VVKETTALGAAYLAGLAVDY 444 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEc-CCCcchHHHHHHHHHHHhCc
Confidence 3455566666666666666544333 67899999999999999999999999877654 44569999999999876553
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0071 Score=61.94 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhccccC---CCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHH
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMNN---KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFD 278 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~---~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D 278 (676)
...+..+-+..|+++-.|-.|.+|...+.+... .....+|+|+|||+|.+++.+ ++.+.. ..+.++|+..+.
T Consensus 100 ~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~--~~~~~~---~~Sl~~G~v~l~ 174 (315)
T 1t6c_A 100 EEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK--GYKVRE---VISLPIGIVNLT 174 (315)
T ss_dssp HHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE--TTEEEE---EEEECCCHHHHH
T ss_pred HHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe--CCceee---EEEEeccHHHHH
Confidence 445555556789998766677777655443321 134799999999999999964 443321 234689998887
Q ss_pred HHH
Q 005807 279 NAL 281 (676)
Q Consensus 279 ~~l 281 (676)
+.+
T Consensus 175 e~~ 177 (315)
T 1t6c_A 175 ETF 177 (315)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0044 Score=68.73 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=60.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhcc
Q 005807 351 ETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILR 428 (676)
Q Consensus 351 e~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~ 428 (676)
..+++-+++.+.-.++..++..+.....++.|.++||+++++.+.+++.+.||.++..+ .+.++.|+|||+.|+.-.
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~ 483 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFHGL 483 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHHHHh
Confidence 45566666766666667777665444567899999999999999999999999976543 457899999999998644
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.56 Score=47.40 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=27.8
Q ss_pred HcCCCeEEeeChhHHHHHhcccc---CCCCeEEEEeeCCceeEEEEE
Q 005807 211 IAGLDVQRIINEPTAAALSYGMN---NKEGLIAVFDLGGGTFDVSVL 254 (676)
Q Consensus 211 ~AGl~~~~li~Ep~AAal~y~~~---~~~~~vlV~D~GgGT~Dvsv~ 254 (676)
..|++ +.+.|+..|||++-... +..++++++-+|-| +-..++
T Consensus 97 ~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 141 (302)
T 3vov_A 97 ATGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTG-IGGGVV 141 (302)
T ss_dssp HHSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hhCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCc-eeEEEE
Confidence 34776 57999999999864322 23347888888877 444443
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.18 Score=51.53 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=28.9
Q ss_pred cCCCeEEeeChhHHHHHhccc---cCCCCeEEEEeeCCceeEEEEE
Q 005807 212 AGLDVQRIINEPTAAALSYGM---NNKEGLIAVFDLGGGTFDVSVL 254 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~~---~~~~~~vlV~D~GgGT~Dvsv~ 254 (676)
.|++ +.+.|+..|+|++-.. .+..++++++-+|.| +-..++
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 139 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGII 139 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEE
Confidence 4776 6899999999987432 233347888888888 555554
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0035 Score=68.88 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCCC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGDV 431 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~~ 431 (676)
.++.|.++||+++++.+.+++.+.||.++.. ..+.++.|+|||+.|+.-.+..
T Consensus 404 ~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~-~~~~e~~alGaA~la~~a~G~~ 456 (501)
T 3g25_A 404 DVQSLRVDGGAVKNNFIMQFQADIVNTSVER-PEIQETTALGAAFLAGLAVGFW 456 (501)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHTSEEEE-ESCCCHHHHHHHHHHHHHTTSS
T ss_pred CCcEEEEecchhcCHHHHHHHHHHhCCceEe-cCCCcchHHHHHHHHHHHhCcc
Confidence 4689999999999999999999999987654 4467899999999999766643
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.16 E-value=1.1 Score=45.81 Aligned_cols=47 Identities=23% Similarity=0.156 Sum_probs=32.8
Q ss_pred CcEEEEEcCCcCcHHHHHHHHHHhCCCC---------CCCCCcchhHhhHHHHHhh
Q 005807 379 VDEVLLVGGMTRVPKVQEIVTEIFGKSP---------SKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 379 i~~ViLvGG~s~~p~i~~~l~~~fg~~~---------~~~~~p~~aVa~GAal~a~ 425 (676)
++.|+|.||.+..+.+.+.|++.+.... ....-.+.+.++|||.++.
T Consensus 270 p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~l 325 (327)
T 4db3_A 270 PHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLNI 325 (327)
T ss_dssp CSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTTC
T ss_pred CCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4789999999988878787877763211 1122346789999997653
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.98 E-value=1.1 Score=45.51 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=32.2
Q ss_pred CcEEEEEcCCcCc-HHHHHHHHHHhC----------CCCCCCCCcchhHhhHHHHHhh
Q 005807 379 VDEVLLVGGMTRV-PKVQEIVTEIFG----------KSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 379 i~~ViLvGG~s~~-p~i~~~l~~~fg----------~~~~~~~~p~~aVa~GAal~a~ 425 (676)
.+.|+|.||.++. +.+.+.|++.+. .++......+.+.++|||.++.
T Consensus 261 P~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 261 LNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp CCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred CCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 4789999999876 666666655542 1223344566799999998764
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.012 Score=64.51 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=55.3
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHh
Q 005807 346 TRSKFETLVNHLIERTKAPCKNCLKDAN-ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 346 tr~~fe~~~~~~v~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a 424 (676)
++.++ ++-+++.+.-.++..++... .....++.|.++||.++++.+.+++.+.||.++..+ .+.++.|.|||+.|
T Consensus 368 ~~~~~---~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~-~~~e~~alGaA~la 443 (495)
T 2dpn_A 368 SRAHL---ARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVP-EVTETTALGAALMA 443 (495)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHhCCeeEec-CCcccHHHHHHHHH
Confidence 45544 44444444444444444321 112346889999999999999999999999877543 45669999999999
Q ss_pred hhccC
Q 005807 425 GILRG 429 (676)
Q Consensus 425 ~~l~~ 429 (676)
+.-.+
T Consensus 444 ~~a~G 448 (495)
T 2dpn_A 444 GVGAG 448 (495)
T ss_dssp HHHHT
T ss_pred HhhcC
Confidence 86544
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.93 Score=45.62 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=35.2
Q ss_pred CcEEEEEcCCcCcHHHHHHHHHHhCCCC------CCCCCcchhHhhHHHHHhhh
Q 005807 379 VDEVLLVGGMTRVPKVQEIVTEIFGKSP------SKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 379 i~~ViLvGG~s~~p~i~~~l~~~fg~~~------~~~~~p~~aVa~GAal~a~~ 426 (676)
++.|+|.||.+..+.+.+.|++.+.... ......+.+.++|||.++..
T Consensus 238 p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 238 PTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred CCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 4789999999988888888888775321 12334567899999987654
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.45 Score=48.53 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=32.7
Q ss_pred CcEEEEEcCCcC-cHHHHHHHHHHhCCC----------CCCCCCcchhHhhHHHHHhhh
Q 005807 379 VDEVLLVGGMTR-VPKVQEIVTEIFGKS----------PSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 379 i~~ViLvGG~s~-~p~i~~~l~~~fg~~----------~~~~~~p~~aVa~GAal~a~~ 426 (676)
++.|+|.||.+. .+.+.+.+++.+... +......+.+.+.|||.++..
T Consensus 263 p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~~ 321 (326)
T 2qm1_A 263 PDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLALQ 321 (326)
T ss_dssp CSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGGG
T ss_pred CCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHHH
Confidence 468999999886 577777777666311 112234567899999988764
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0089 Score=65.67 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccC
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRG 429 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~ 429 (676)
.++.|.++||+++++.+.+++.+.||.++.. ..+.++.|+|||+.|+.-.+
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~-~~~~e~~alGaA~lA~~~~G 453 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQLGVDVVR-PKVAETTALGAAYAAGIAVG 453 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSCEEE-ESCSCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCCcccCHHHHHHHHHHhCCeEEe-CCCCcchHHHHHHHHHhhcC
Confidence 4589999999999999999999999987754 45567999999999987555
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0088 Score=65.71 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=43.8
Q ss_pred CC-cEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhccCC
Q 005807 378 DV-DEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILRGD 430 (676)
Q Consensus 378 ~i-~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~~~ 430 (676)
.+ +.|.++||.++++.+.+++.+.||.++.. ..+.++.|.|||+.|+.-.+.
T Consensus 406 ~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~-~~~~e~~alGaA~la~~~~G~ 458 (503)
T 2w40_A 406 EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEV-SKYKEVTSLGAAVLAGLEVKI 458 (503)
T ss_dssp SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEE-ESCSCHHHHHHHHHHHHHTTC
T ss_pred CccceEEEeCccccCHHHHHHHHHHHCCeEEe-cCCCcchHHHHHHHHHHHhCc
Confidence 35 78999999999999999999999987754 445669999999999875553
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=2.6 Score=43.12 Aligned_cols=61 Identities=8% Similarity=-0.026 Sum_probs=41.2
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHc-C--CCeEEeeChhHHHHHhccccCCCCeEEEEeeCCcee
Q 005807 185 SVSEAVITVPAYFNDAQRQATKDAGRIA-G--LDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTF 249 (676)
Q Consensus 185 ~~~~~VITVPa~~~~~qr~~l~~Aa~~A-G--l~~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~ 249 (676)
++..+.|++|...+......+++..+.. | .-.+.+.|+..|||+++ . ....+++=+|-|.-
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~---~~~~v~v~~GTGig 133 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-T---PDGGVVLISGTGSN 133 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-C---SSCEEEEEESSSEE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-C---CCCcEEEEEcCCce
Confidence 5778999999998876655666665543 4 13468999999999984 2 23445555566543
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.016 Score=63.34 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
.++.|.++||+++++.+.+++.+.||.++.... .++.+.|||+.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHHHHHHH
Confidence 468999999999999999999999999876443 58999999655543
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.04 E-value=1.7 Score=44.14 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhcccc----CCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHH
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMN----NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDF 277 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~----~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 277 (676)
...+.++-+..|+++-.|-.|-+|.-.+.+.. ...+..+|+|+|||+|.+++.+ ++.+.. ..+.++|.-.+
T Consensus 92 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl 166 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN--KNEILW---KQSFEIGGQRL 166 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC--SSCEEE---EEEESCCHHHH
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE--CCeEee---eEEEechhhHH
Confidence 44556666678999755555666654433322 2224799999999999999975 333221 22367888777
Q ss_pred HHHH
Q 005807 278 DNAL 281 (676)
Q Consensus 278 D~~l 281 (676)
.+.+
T Consensus 167 ~e~f 170 (315)
T 3mdq_A 167 IDRF 170 (315)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6643
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=94.01 E-value=3 Score=43.89 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=28.0
Q ss_pred cCCCeEEeeChhHHHHHhcc---ccCCCCeEEEEeeCCceeEEEEE
Q 005807 212 AGLDVQRIINEPTAAALSYG---MNNKEGLIAVFDLGGGTFDVSVL 254 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~---~~~~~~~vlV~D~GgGT~Dvsv~ 254 (676)
.|++ +.+.|+..|||++-. ..+..++++++-+|.| +-..++
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 229 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVI 229 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 689999999998743 2223347888888887 445554
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.94 E-value=4.5 Score=41.01 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=27.5
Q ss_pred cCCCeEEeeChhHHHHHhcc---ccCCCCeEEEEeeCCceeEEEEE
Q 005807 212 AGLDVQRIINEPTAAALSYG---MNNKEGLIAVFDLGGGTFDVSVL 254 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~---~~~~~~~vlV~D~GgGT~Dvsv~ 254 (676)
.|++ +.+.|+..|||++-. ..+..++++++-+|-| +-..++
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv 163 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLV 163 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 689999999998632 2222347888888887 444443
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.064 Score=58.30 Aligned_cols=72 Identities=8% Similarity=0.003 Sum_probs=54.7
Q ss_pred HHHHhHHHHH--HHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHH-hCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 351 ETLVNHLIER--TKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEI-FGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 351 e~~~~~~v~~--i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~-fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
..+.+-+++. +.-.++.+++.... .+.|.++||++++|.+.+++.+. ||.++..+. ..++.|+|||+.|+.-
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~-~~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRPDCAVYTAN-AHNDVSFGALRLIDPG 436 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEES-SCCCTTGGGHHHHCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcC-CCchHHHHHHHHhCcc
Confidence 4556666663 55556666665432 27899999999999999999999 999776554 4568899999999864
|
| >3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.57 Score=51.91 Aligned_cols=57 Identities=18% Similarity=0.423 Sum_probs=45.8
Q ss_pred EEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHH
Q 005807 342 NITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVT 399 (676)
Q Consensus 342 ~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~ 399 (676)
.+.||..+++++.. --..+..-++-.|++++++..+|+.|+|.||++.---+.+.+.
T Consensus 499 ~i~itq~DIr~~ql-AKaAi~agi~~Ll~~~gi~~~di~~v~lAGaFG~~l~~~~a~~ 555 (631)
T 3zyy_X 499 DIVITEADIQNLIR-AKAAIFAGVRTMLAMVDLPLEAIDRVIIAGGFGKYLNIKDAIT 555 (631)
T ss_dssp CEEEEHHHHHHHHH-HHHHHHHHHHHHHHHTTCCGGGCCEEEEESSSCSEEEHHHHHH
T ss_pred cEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeccccccCCHHHHhh
Confidence 48899999987643 3334556778889999999999999999999998777777664
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=7.1 Score=38.89 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCcCcHHHHHHHHHHhCC-CCCCCCCcchhHhhHHHHHhhh
Q 005807 378 DVDEVLLVGGMTRVPKVQEIVTEIFGK-SPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 378 ~i~~ViLvGG~s~~p~i~~~l~~~fg~-~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+.+.|+|.||.+..+.+.+.+++.+.. ++..+. .+.+.+.||+.++..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 347899999998778888888887753 333344 567889999987754
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=92.39 E-value=6.1 Score=41.82 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=27.9
Q ss_pred cCCCeEEeeChhHHHHHhcc---ccCCCCeEEEEeeCCceeEEEEE
Q 005807 212 AGLDVQRIINEPTAAALSYG---MNNKEGLIAVFDLGGGTFDVSVL 254 (676)
Q Consensus 212 AGl~~~~li~Ep~AAal~y~---~~~~~~~vlV~D~GgGT~Dvsv~ 254 (676)
.|++ +.+.|+..|||++-. ..+..++++++-+|.| +-..++
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 251 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIV 251 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 589999999998743 2223347888888887 445544
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=90.71 E-value=2.3 Score=41.54 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=17.7
Q ss_pred ceEEEEcCCceEEEEEEECC
Q 005807 54 DVIGVDLGTTNSCVAVMEGK 73 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~ 73 (676)
+.++||+|+|+++.++++++
T Consensus 4 M~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEEECSSEEEEEEESSS
T ss_pred eEEEEEECCCeEEEEEEECC
Confidence 48999999999999998754
|
| >2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A | Back alignment and structure |
|---|
Probab=89.91 E-value=1.3 Score=47.46 Aligned_cols=56 Identities=13% Similarity=-0.003 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCC--eEEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE
Q 005807 200 AQRQATKDAGRIAGLD--VQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI 256 (676)
Q Consensus 200 ~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~ 256 (676)
.-++.+.++...-|++ ++.++|+..|++++... +..+.++.+=+|-|+=-.-+...
T Consensus 164 ~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~-~~~~~~iglilGTGvgg~~i~~~ 221 (457)
T 2yhx_A 164 KLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNY-TDAXIKMGIIFGSGVNAAYWCDS 221 (457)
T ss_dssp SBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHH-HCTTEEEEEEESSSEEEEEEECG
T ss_pred HHHHHHHHhHhhcCCcceeEEEEecchhhccchhh-cCCccEEEEEECcEEEEEEEECC
Confidence 5567788888766775 47899999999998665 22346666667877655555443
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=10 Score=41.43 Aligned_cols=183 Identities=15% Similarity=0.167 Sum_probs=91.4
Q ss_pred CCCeEEEEe-CCCCCHHHHHH--HHHHHHHcCCCeEEeeChhHHHHHhccccCC-CCeEEEEeeCCceeEEEEEEEeCCe
Q 005807 185 SVSEAVITV-PAYFNDAQRQA--TKDAGRIAGLDVQRIINEPTAAALSYGMNNK-EGLIAVFDLGGGTFDVSVLEISNGV 260 (676)
Q Consensus 185 ~~~~~VITV-Pa~~~~~qr~~--l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~-~~~vlV~D~GgGT~Dvsv~~~~~~~ 260 (676)
+++.+++|. |..|+.-..-. -+.-|...|.+.+. ++.-.|-+++...... ... +++-+.||++.+.. +.++.
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~~~p-~~l~vsGg~t~~~~--~~~~~ 147 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEAEDP-LTLYVSGGNTQVIA--YVSKK 147 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSCSSC-EEEEECSSCEEEEE--EETTE
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCCCCC-cEEEEcCCCcEEEE--EeCCc
Confidence 466676766 77766432211 12234445776544 4554544433222221 123 66666678876654 44788
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHcCCCCceeeeccccccCCCCCee
Q 005807 261 FEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKH 340 (676)
Q Consensus 261 ~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~ 340 (676)
+++++..-|. --|+.||..= . .+ +......+ .+...|...+ ..+.+|....+ .+
T Consensus 148 ~~~lg~t~d~-s~G~~~D~~a-~----~l----gl~~~gg~----~ie~lA~~g~--------~~~~~p~~~~~----~~ 201 (540)
T 3en9_A 148 YRVFGETLDI-AVGNCLDQFA-R----YV----NLPHPGGP----YIEELARKGK--------KLVDLPYTVKG----MD 201 (540)
T ss_dssp EEEEEEBSSS-CHHHHHHHHH-H----HT----TCCSSCHH----HHHHHHHTCC--------CCCCCCCCEET----TE
T ss_pred eEEEeeccch-HhHHHHHHHH-H----Hc----CCCCCCHH----HHHHHHHcCC--------ccCcCCCCCCC----cc
Confidence 9998876643 4467676421 1 11 22222212 2222222211 11222221111 11
Q ss_pred eEEE-------------EcHHHHHHHHh-HHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHh
Q 005807 341 LNIT-------------LTRSKFETLVN-HLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF 402 (676)
Q Consensus 341 ~~~~-------------itr~~fe~~~~-~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~f 402 (676)
+++. .+.+++-..++ .+++.+.+.+..+++..+ ++.|+|+||-+....+++.|.+.+
T Consensus 202 ~sfsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~ 272 (540)
T 3en9_A 202 IAFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMC 272 (540)
T ss_dssp ECCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHH
Confidence 1100 01222222222 234444455566666655 479999999999999999999877
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=88.28 E-value=0.82 Score=47.09 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhccc----cC--CCCeEEEEeeCCceeEEEEEEE--eC--CeEEEEEecCCCC
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGM----NN--KEGLIAVFDLGGGTFDVSVLEI--SN--GVFEVKATNGDTF 271 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~----~~--~~~~vlV~D~GgGT~Dvsv~~~--~~--~~~~v~~~~g~~~ 271 (676)
.+.+.++-+..|+++-.|-.|-+|...+.+. .. ..+.++|+|+|||+|+++++.- .+ +.+ . .....+
T Consensus 105 ~~fl~~v~~~tGi~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~--~-~~~Slp 181 (343)
T 3cer_A 105 EEFEDEIERILGVRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQV--Q-GAFSMN 181 (343)
T ss_dssp HHHHHHHHHHHSSCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSC--S-EEEEES
T ss_pred HHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCccccc--c-eeEEEe
Confidence 3455666666799874444444444333332 22 2237999999999999999754 21 111 0 122367
Q ss_pred cchHHHHHHH
Q 005807 272 LGGEDFDNAL 281 (676)
Q Consensus 272 lGG~~~D~~l 281 (676)
+|+..+.+.+
T Consensus 182 lG~v~lt~~~ 191 (343)
T 3cer_A 182 IGSVRMTERH 191 (343)
T ss_dssp CCHHHHHHHT
T ss_pred hhHHHHHHHh
Confidence 9998887765
|
| >3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* | Back alignment and structure |
|---|
Probab=85.12 E-value=2.4 Score=45.51 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCCe--EEeeChhHHHHHhccccCCCCeEEEEeeCCceeEEEEEEE
Q 005807 199 DAQRQATKDAGRIAGLDV--QRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSVLEI 256 (676)
Q Consensus 199 ~~qr~~l~~Aa~~AGl~~--~~li~Ep~AAal~y~~~~~~~~vlV~D~GgGT~Dvsv~~~ 256 (676)
..-.+.+++|...-|+++ +.++|+..|++++..... .+.++-+=+|-||=-+-+..+
T Consensus 185 ~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~-~~~~iglIlGTG~N~~y~e~~ 243 (485)
T 3o8m_A 185 HDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTD-PQTKMGIIIGTGVNGAYYDVV 243 (485)
T ss_dssp SBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHC-TTEEEEEEESSSEEEEEEEEG
T ss_pred ccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCC-CCcEEEEEEecCcceEEEeec
Confidence 455778999998889864 689999999999876543 235555556777655555443
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=84.43 E-value=1.3 Score=48.22 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCeEEeeChhHHHHHhccccC--C-CCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 005807 203 QATKDAGRIAGLDVQRIINEPTAAALSYGMNN--K-EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDN 279 (676)
Q Consensus 203 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~--~-~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~ 279 (676)
..+.++-+..|+++-.|-.|-+|...+.+... . .+..+|+|+|||+|.+++.+ ++.+.. ....++|...+.+
T Consensus 100 ~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrlte 174 (513)
T 1u6z_A 100 DFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE--NFEPIL---VESRRMGCVSFAQ 174 (513)
T ss_dssp HHHHHHTTTCSSCEEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEE--TTEEEE---EEEESCCHHHHHH
T ss_pred HHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEe--CCeeeE---EEEEeccHHHHHH
Confidence 44555556679987444444444443333321 1 12689999999999999863 443321 2236789888876
Q ss_pred HH
Q 005807 280 AL 281 (676)
Q Consensus 280 ~l 281 (676)
.+
T Consensus 175 ~f 176 (513)
T 1u6z_A 175 LY 176 (513)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.02 E-value=2.1 Score=46.54 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCeEEeeChhHHHHHhccccC--CCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHH
Q 005807 202 RQATKDAGRIAGLDVQRIINEPTAAALSYGMNN--KEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDN 279 (676)
Q Consensus 202 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~--~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~ 279 (676)
...+.++-+..|+++-.|-.|-+|.-.+.+... .....+|+|+|||+|.+++.+ ++.+. ...+.++|.-.+.+
T Consensus 103 ~~fl~~i~~~tG~~ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrl~e 177 (508)
T 3hi0_A 103 PDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIK--DKSCG---EGITLPLGGLRLSE 177 (508)
T ss_dssp HHHHHHHHHHHTSCEEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEE--TTEEC---CCEEESCCHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEee--CCeee---eEEEecceEEehhh
Confidence 455666667789987444445555444444322 122559999999999999975 43321 12246788887765
Q ss_pred H
Q 005807 280 A 280 (676)
Q Consensus 280 ~ 280 (676)
.
T Consensus 178 ~ 178 (508)
T 3hi0_A 178 Q 178 (508)
T ss_dssp H
T ss_pred c
Confidence 3
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 676 | ||||
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 8e-83 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 3e-81 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 4e-71 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 8e-70 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 2e-66 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 1e-52 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 7e-48 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 7e-29 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 2e-28 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 5e-28 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 3e-27 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 3e-20 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 3e-18 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 257 bits (659), Expect = 8e-83
Identities = 117/193 (60%), Positives = 151/193 (78%), Gaps = 4/193 (2%)
Query: 239 IAVFDLGGGTFDVSVLEIS----NGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTER 294
IAV+DLGGGTFD+S++EI FEV ATNGDT LGGEDFD+ L+ +LV EFK+ +
Sbjct: 5 IAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 64
Query: 295 IDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLV 354
IDL D LA+QRL+E+AEKAKIELSS QT++NLP+ITADA+G KH+NI +TR+K E+LV
Sbjct: 65 IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLV 124
Query: 355 NHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDE 414
L+ R+ K L+DA +++ D+D+V+LVGG TR+P VQ+ V E FGK P K VNPDE
Sbjct: 125 EDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDE 184
Query: 415 AVALGAAIQGGIL 427
AVA+GAA+QGG+L
Sbjct: 185 AVAIGAAVQGGVL 197
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 253 bits (647), Expect = 3e-81
Identities = 127/181 (70%), Positives = 154/181 (85%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+IG+DLGTTNSCVA+M+G P+V+EN+EG RTTPS++A+ Q GE LVG PAKRQAVTNP
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 61
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
NTLF KRLIGRRF D + Q+++ ++PFKI+ A NGDAWVE GQ+ +P QI A VL KM
Sbjct: 62 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKM 121
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMNN 234
K+TAE YLG+ V+EAVITVPAYFNDAQRQATKDAGRIAGL+V+RIINEPTAAAL+YG++
Sbjct: 122 KKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDK 181
Query: 235 K 235
Sbjct: 182 G 182
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 227 bits (579), Expect = 4e-71
Identities = 87/193 (45%), Positives = 129/193 (66%), Gaps = 5/193 (2%)
Query: 236 EGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERI 295
E + +FDLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDN ++ ++EFKR +
Sbjct: 4 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKK 63
Query: 296 DLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVN 355
D+S++K A++RLR + E+AK LSS++Q I + + ++TR++FE L
Sbjct: 64 DISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNA 119
Query: 356 HLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIF-GKSPSKGVNPDE 414
L T P + L+DA + + +++LVGG TR+PK+Q+++ + F GK +K +NPDE
Sbjct: 120 DLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDE 179
Query: 415 AVALGAAIQGGIL 427
AVA GAA+Q IL
Sbjct: 180 AVAYGAAVQAAIL 192
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 223 bits (569), Expect = 8e-70
Identities = 104/184 (56%), Positives = 131/184 (71%), Gaps = 4/184 (2%)
Query: 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPA 114
+G+DLG+T SCV V + ++I N +G RTTPS VAF E L+G AK Q NP
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPT 61
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVN-APNGDAWVEANGQ--QYSPSQIGAFVL 171
NT+F KRLIGRRF+DA Q +MK PF +VN A VE G+ + P ++ + VL
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 172 TKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYG 231
TKMKE AE+YLGK+V+ AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA++YG
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 232 MNNK 235
++ K
Sbjct: 182 LDKK 185
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 213 bits (543), Expect = 2e-66
Identities = 95/158 (60%), Positives = 124/158 (78%), Gaps = 1/158 (0%)
Query: 429 GDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQG 488
+V++LLLLDVTPLSLGIET GG+ T LI RNTTIPTK++Q F+T +DNQ V I+V +G
Sbjct: 2 ENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEG 61
Query: 489 EREMAADNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRS 548
ER M DN LG+FEL GIPPAPRG+PQIEVTFDIDANGI+ VSA DK+TGKE +ITI +
Sbjct: 62 ERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITN 121
Query: 549 -SGGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNAD 585
G LS+ +IE+MV+EAE + D++++ + +N+ +
Sbjct: 122 DKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 174 bits (443), Expect = 1e-52
Identities = 88/117 (75%), Positives = 102/117 (87%)
Query: 435 LLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAA 494
LLLDVTPLSLGIET+GG+ T LI +NTTIPTK SQVFSTA DNQ+ V I VLQGER+ AA
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 495 DNKALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG 551
DNK+LG+F L GI PAPRG+PQIEVTFDIDA+GI+ VSAKDK +GKEQ+ITI++S G
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 162 bits (410), Expect = 7e-48
Identities = 56/115 (48%), Positives = 80/115 (69%)
Query: 437 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADN 496
+DV PLSLG+ET+GG+ ++I RNTTIP ++Q F+T D QT + I V+QGERE+ D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 497 KALGEFELMGIPPAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGG 551
++L F L GIP P G I VTF +DA+G+++V+A +K+TG E I ++ S G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 111 bits (279), Expect = 7e-29
Identities = 29/187 (15%), Positives = 68/187 (36%), Gaps = 17/187 (9%)
Query: 239 IAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLS 298
V D+GGGT +V+V+ + + V + G++ D A+++++ ++ +
Sbjct: 9 NMVVDIGGGTTEVAVISLGSIVTW-----ESIRIAGDEMDEAIVQYVRETYRVAIGERTA 63
Query: 299 QDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLI 358
+ +++ E+ D S +TL + + ++
Sbjct: 64 ERVKIEIGNVFPSKEND---------ELETTVSGIDLSTGLPRKLTLKGGEVREALRSVV 114
Query: 359 ERTKAPCKNCLKDANITIK---DVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEA 415
+ L+ + + L GG + + + ++ + G S + P A
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTA 174
Query: 416 VALGAAI 422
VA GA +
Sbjct: 175 VAKGAGM 181
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 109 bits (273), Expect = 2e-28
Identities = 23/194 (11%), Positives = 53/194 (27%), Gaps = 38/194 (19%)
Query: 234 NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
++ + + DLGG T D+S + + + GD+ LG +A+ + L +
Sbjct: 4 DELDSLLIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS 61
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
I +L + ++
Sbjct: 62 -------------------------------SYLADDIIIHRKDNNYLKQRINDENKISI 90
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGV--- 410
V + + + + V+++GG + + V + +
Sbjct: 91 VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAE--LICDAVKKHTQIRDERFFKTN 148
Query: 411 NPDEAVALGAAIQG 424
N + G + G
Sbjct: 149 NSQYDLVNGMYLIG 162
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 107 bits (268), Expect = 5e-28
Identities = 40/179 (22%), Positives = 61/179 (34%), Gaps = 45/179 (25%)
Query: 56 IGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQK-GELLVGTPAKRQAVTNPA 114
IG+DLGT N+ V + ++ N PSV+A + GE+L + +
Sbjct: 3 IGIDLGTANTLVFLRGKG---IVVNE------PSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 115 NTLFGTKRLIGRRFNDAQTQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKM 174
T+ + + D + +L
Sbjct: 54 ATIKAIRPMRDGVIAD---------------------------------YTVALVMLRYF 80
Query: 175 KETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALSYGMN 233
A+ + VI VP D +R+A DAG AG +I EP AAA+ G N
Sbjct: 81 INKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GSN 137
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 103 bits (259), Expect = 3e-27
Identities = 32/94 (34%), Positives = 56/94 (59%)
Query: 552 LSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611
L+E EI+KMV++AE +A+ D++ + L+ RN D ++S K + E +K+P + IE
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQ 645
A++ L A+ GED I+AK+ + K+ +
Sbjct: 61 SALTALETALKGEDKAAIEAKMQELAQVSQKLME 94
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 84.6 bits (209), Expect = 3e-20
Identities = 23/107 (21%), Positives = 49/107 (45%)
Query: 552 LSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIE 611
L++SEI M+K++ +A++D + + L + + A + S+ +L + + I+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 612 DAVSDLRKAMAGEDIDGIKAKLDAANKAVSKIGQHMAGGSSDNSASG 658
DA + L + G+D+D I+ + +K S + G
Sbjct: 61 DAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKG 107
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 80.2 bits (197), Expect = 3e-18
Identities = 28/188 (14%), Positives = 53/188 (28%), Gaps = 39/188 (20%)
Query: 234 NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTE 293
+ G V D+G T DV + + + V + +G D +AL +
Sbjct: 3 QQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKI-------- 53
Query: 294 RIDLSQDKLALQRLRESAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETL 353
+ + ++ E L
Sbjct: 54 -------------------AKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILEDL 94
Query: 354 VNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGV--N 411
N +IE + + + V ++ VGG + + + + EI + K +
Sbjct: 95 ANRIIENIRLNLRG-------EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPED 145
Query: 412 PDEAVALG 419
A ALG
Sbjct: 146 LQFANALG 153
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 676 | |||
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.94 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.94 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.86 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.81 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.53 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.47 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 99.46 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.46 | |
| d1ud0a_ | 84 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.34 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.22 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.76 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.89 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.68 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.55 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.53 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 96.54 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 96.51 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 96.33 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 95.97 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 95.78 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 94.16 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 92.94 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 92.34 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 92.32 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 92.21 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 88.55 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 87.24 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 84.45 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 81.11 |
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=2.5e-38 Score=301.81 Aligned_cols=181 Identities=70% Similarity=1.126 Sum_probs=174.9
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQTQ 134 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~~ 134 (676)
|||||||||||++|++.++.++++.|.+|++.+||+++|..++++++|+.|..++..+|.++++++|||||+.+.++.++
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 79999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCC
Q 005807 135 KEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIAGL 214 (676)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~AGl 214 (676)
.....+||+++...++...+...++.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+.|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~ 161 (183)
T d1dkgd1 82 RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL 161 (183)
T ss_dssp HHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeChhHHHHHhccccCC
Q 005807 215 DVQRIINEPTAAALSYGMNNK 235 (676)
Q Consensus 215 ~~~~li~Ep~AAal~y~~~~~ 235 (676)
+++++++||+|||++|++++.
T Consensus 162 ~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 162 EVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp EESCCCBHHHHHHHHHTCCC-
T ss_pred CEEEEecCHHHHHHHhcccCC
Confidence 999999999999999998763
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.2e-37 Score=300.43 Aligned_cols=191 Identities=61% Similarity=0.987 Sum_probs=181.5
Q ss_pred eEEEEeeCCceeEEEEEEEe----CCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHH
Q 005807 238 LIAVFDLGGGTFDVSVLEIS----NGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEK 313 (676)
Q Consensus 238 ~vlV~D~GgGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 313 (676)
+|||||+||||+|+|++++. ++.++++++.++..+||++||++|++|+.++|+++++.++..+++++.+|+.+||+
T Consensus 4 ~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~ 83 (198)
T d1dkgd2 4 TIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEK 83 (198)
T ss_dssp EEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 79999999999999999997 45789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHH
Q 005807 314 AKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPK 393 (676)
Q Consensus 314 ~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~ 393 (676)
+|+.||.+.++++++|.+..+..+..++.++|||++|+++++|+++++.++|.++|+++++++.+|+.|+|+||+|++|+
T Consensus 84 ~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~p~ 163 (198)
T d1dkgd2 84 AKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPM 163 (198)
T ss_dssp HHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHH
T ss_pred HHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCCHH
Confidence 99999999999999998887766667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhcc
Q 005807 394 VQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGILR 428 (676)
Q Consensus 394 i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l~ 428 (676)
|++.|++.|+.++..+.||++|||+|||++|+.||
T Consensus 164 l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 164 VQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 99999999998888999999999999999999875
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.6e-36 Score=289.46 Aligned_cols=187 Identities=45% Similarity=0.792 Sum_probs=178.1
Q ss_pred eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHH
Q 005807 238 LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIE 317 (676)
Q Consensus 238 ~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 317 (676)
+|||||+||||+|+|++++.++.++++++.++..+||.+||++|++|+.++|.++++.++..+++++.+|+.+||++|+.
T Consensus 6 ~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ 85 (193)
T d1bupa2 6 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRT 85 (193)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHH
Q 005807 318 LSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEI 397 (676)
Q Consensus 318 Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~ 397 (676)
||.+.++.+.++.+..+ .++.++|||++|+++++|+++++.+.++++|+++++.+.+|+.|+||||+|++|+|++.
T Consensus 86 ls~~~~~~~~~~~~~~~----~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~ 161 (193)
T d1bupa2 86 LSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKL 161 (193)
T ss_dssp HTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHH
T ss_pred cCCCceEEEEEecccCC----CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHH
Confidence 99999999999887665 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-CCCCCCCCcchhHhhHHHHHhhhcc
Q 005807 398 VTEIFG-KSPSKGVNPDEAVALGAAIQGGILR 428 (676)
Q Consensus 398 l~~~fg-~~~~~~~~p~~aVa~GAal~a~~l~ 428 (676)
|++.|+ .++..+.||++|||+|||++|+.|+
T Consensus 162 i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 162 LQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 999996 5666789999999999999999875
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.5e-36 Score=288.37 Aligned_cols=180 Identities=57% Similarity=0.909 Sum_probs=165.7
Q ss_pred ceEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEccCCcEEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHHH
Q 005807 54 DVIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQKGELLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQT 133 (676)
Q Consensus 54 ~vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~~ 133 (676)
.|||||||||||+||++.+|.++++.|.+|++.+||+|+|. ++++++|..|+.++..+|.++++++|||||+.+.++.+
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~-~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEEC-SSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEEC-CCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 58999999999999999999999999999999999999995 66889999999999999999999999999999999999
Q ss_pred HHHhccCCeEEEeCCCCCeE--EE--eCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 005807 134 QKEMKMVPFKIVNAPNGDAW--VE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAG 209 (676)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~--v~--~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa 209 (676)
+...+.+|+.+.... +... +. ...+.++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa 159 (185)
T d1bupa1 81 QSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 159 (185)
T ss_dssp HHHHTTCSSEEEEET-TEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCC-CCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHH
Confidence 999999999888744 3322 33 234679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeEEeeChhHHHHHhccccCC
Q 005807 210 RIAGLDVQRIINEPTAAALSYGMNNK 235 (676)
Q Consensus 210 ~~AGl~~~~li~Ep~AAal~y~~~~~ 235 (676)
++|||++++||+||+|||++|+++++
T Consensus 160 ~~AGl~~~~li~EP~AAAl~Ygldkk 185 (185)
T d1bupa1 160 TIAGLNVLRIINEPTAAAIAYGLDKK 185 (185)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTSC
T ss_pred HHcCCCeEEEEcCHHHHHHHhcccCC
Confidence 99999999999999999999998763
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=5.5e-35 Score=266.96 Aligned_cols=157 Identities=61% Similarity=0.923 Sum_probs=151.2
Q ss_pred CCCceeEEEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCC
Q 005807 429 GDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIP 508 (676)
Q Consensus 429 ~~~~~~~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~ 508 (676)
+.+++++++||+|+|+||++.+|.|.+|||||++||+++++.|+|..|||+.+.|+|||||+..+.+|.+||+|.|.|+|
T Consensus 2 ~~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip 81 (159)
T d1yuwa1 2 ENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIP 81 (159)
T ss_dssp CCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCC
T ss_pred CccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeeEEEEEEcCCccEEEEEEecCCCceeeEEeccC-CCCCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 005807 509 PAPRGIPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSESEIEKMVKEAELHAQRDQERKTLIDIRNNAD 585 (676)
Q Consensus 509 ~~~~g~~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le 585 (676)
|.|+|.++|+|+|++|.||+|+|+|.++.||++..++|... +.||++||++|++++++++.+|++.|++.++||.||
T Consensus 82 ~~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 82 PAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp CCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred cCCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999986 569999999999999999999999999988888764
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=5.4e-27 Score=202.35 Aligned_cols=116 Identities=75% Similarity=1.093 Sum_probs=112.4
Q ss_pred EEEeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCC
Q 005807 435 LLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGI 514 (676)
Q Consensus 435 ~~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~ 514 (676)
+++||+|+|+||++.+|.|.+|||||++||+++++.|+|..|||+.+.|+|||||+..+.+|.+||+|.|+++||.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEcCCccEEEEEEecCCCceeeEEeccCC
Q 005807 515 PQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSG 550 (676)
Q Consensus 515 ~~i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~ 550 (676)
++|+|+|++|.||+|+|+|.|+.||++.+++|....
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117 (118)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTC
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCC
Confidence 999999999999999999999999999999998653
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.1e-26 Score=197.97 Aligned_cols=114 Identities=48% Similarity=0.812 Sum_probs=111.0
Q ss_pred EeecccccceeeeCCeEEEEEcCCCCCCCccceeeeecccCCceeEEEEeecCccccccccceeEEEEcCCCCCCCCCCe
Q 005807 437 LDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKALGEFELMGIPPAPRGIPQ 516 (676)
Q Consensus 437 ~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~ 516 (676)
.||+|+|+||++.+|.|.+|||||++||+++++.|+|..|+|+.+.|+|||||+..+.+|.+||+|.|.++||.|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCccEEEEEEecCCCceeeEEeccCC
Q 005807 517 IEVTFDIDANGIVTVSAKDKATGKEQQITIRSSG 550 (676)
Q Consensus 517 i~v~f~~d~~g~l~v~~~~~~t~~~~~~~i~~~~ 550 (676)
|+|+|++|.||+|+|+|.|+.||++..++|..+.
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~ 114 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCS
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCC
Confidence 9999999999999999999999999999998754
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=7.1e-22 Score=177.80 Aligned_cols=133 Identities=32% Similarity=0.384 Sum_probs=101.7
Q ss_pred eEEEEcCCceEEEEEEECCceEEEeCCCCCcccceEEEEcc-CCc-EEEcHHHHHhhhhCCCchHHHhhhhhcCCCCCHH
Q 005807 55 VIGVDLGTTNSCVAVMEGKNPKVIENSEGTRTTPSVVAFNQ-KGE-LLVGTPAKRQAVTNPANTLFGTKRLIGRRFNDAQ 132 (676)
Q Consensus 55 vvGID~GTt~s~va~~~~~~~~vi~~~~g~~~~PS~v~~~~-~~~-~~~G~~A~~~~~~~p~~~~~~~K~llg~~~~d~~ 132 (676)
.||||||||||++++.. ...++. .|+.+++.. .+. ..+|..|......++.+. ...|+
T Consensus 2 ~iGIDlGTtns~va~~~--~~~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~-~~~k~---------- 61 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRG--KGIVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATI-KAIRP---------- 61 (137)
T ss_dssp EEEEEECSSEEEEEETT--TEEEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTE-EEECC----------
T ss_pred eEEEEcChhhEEEEEeC--CCEEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccc-eeEEe----------
Confidence 69999999999998743 333332 256666543 344 447777766554443331 11111
Q ss_pred HHHHhccCCeEEEeCCCCCeEEEeCCeeeCHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Q 005807 133 TQKEMKMVPFKIVNAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSEAVITVPAYFNDAQRQATKDAGRIA 212 (676)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ev~a~~L~~l~~~a~~~l~~~~~~~VITVPa~~~~~qr~~l~~Aa~~A 212 (676)
..+..+.+.+..++++.+++..++...+..+.++|||||++|++.||+++++||+.|
T Consensus 62 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~A 118 (137)
T d1jcea1 62 -----------------------MRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEA 118 (137)
T ss_dssp -----------------------EETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred -----------------------ccCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHc
Confidence 123456788899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeChhHHHHHhc
Q 005807 213 GLDVQRIINEPTAAALSY 230 (676)
Q Consensus 213 Gl~~~~li~Ep~AAal~y 230 (676)
||++++||+||+|||+++
T Consensus 119 Gl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 119 GASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp TCSEEEEEEHHHHHHHHT
T ss_pred CCCEEEEeCCHHHHHhCC
Confidence 999999999999999864
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=4e-21 Score=183.97 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=125.2
Q ss_pred eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHH
Q 005807 238 LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIE 317 (676)
Q Consensus 238 ~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 317 (676)
.+||||+||||||+|+++..+..+ .+....||.+++..+..++...+...... ...... ..+..
T Consensus 8 gvlV~DiGGGT~Dvsi~~~g~~~~-----~~~~~~gg~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~ 71 (196)
T d1jcea2 8 GNMVVDIGGGTTEVAVISLGSIVT-----WESIRIAGDEMDEAIVQYVRETYRVAIGE------RTAERV-----KIEIG 71 (196)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEE-----EEEESCSHHHHHHHHHHHHHHHHCEECCH------HHHHHH-----HHHHC
T ss_pred ceEEEEcCCCcEEEEEEEcCCEeE-----EeeecCCCcccccchhhhhhhhhcccccc------hhHHHH-----HHHHh
Confidence 899999999999999987655443 34567899999999999998877533221 111100 01111
Q ss_pred cCCC------CceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcC---CCcEEEEEcCC
Q 005807 318 LSST------SQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIK---DVDEVLLVGGM 388 (676)
Q Consensus 318 Ls~~------~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~---~i~~ViLvGG~ 388 (676)
.... ....+.......+ ......+++.++++++.+++.++...+.++++.+..... .++.|+||||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGs 147 (196)
T d1jcea2 72 NVFPSKENDELETTVSGIDLSTG----LPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGG 147 (196)
T ss_dssp BCSCCHHHHHCEEEEEEEETTTT----EEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGG
T ss_pred hhhhhhhccccceeeeeeeccCC----CccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCch
Confidence 1110 1122222222222 566788999999999999999999999999998765321 24679999999
Q ss_pred cCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhhc
Q 005807 389 TRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGIL 427 (676)
Q Consensus 389 s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~l 427 (676)
|++|+|++++++.||.++....||++|||+|||+++..+
T Consensus 148 S~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~~~ 186 (196)
T d1jcea2 148 SLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKV 186 (196)
T ss_dssp GCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCH
T ss_pred hcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHHCH
Confidence 999999999999999999999999999999999987654
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.7e-14 Score=122.97 Aligned_cols=110 Identities=22% Similarity=0.339 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccCChHHHHH
Q 005807 552 LSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKA 631 (676)
Q Consensus 552 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 631 (676)
||++||++|+++++.++++|+.+|++++++|+++++||.+++.|.++.+.++++++..|...+.++..||.+++.+.++.
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~~~d~~~I~~ 80 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQ 80 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 005807 632 KLDAANKAVSKIGQHMAGGSSDNSASGGSQ 661 (676)
Q Consensus 632 ~~~~L~~~~~~i~~~~~~~~~~~~~~g~~~ 661 (676)
.++.|+..+.++.+++++.+...++.|.+.
T Consensus 81 ~~~~L~~~~~~~a~~~m~~~~~~al~G~~i 110 (112)
T d1u00a1 81 AIKNVDKQTQDFAARRMDQSVRRALKGHSV 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998777777777665
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.7e-15 Score=137.42 Aligned_cols=153 Identities=17% Similarity=0.197 Sum_probs=99.9
Q ss_pred CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHH
Q 005807 237 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKI 316 (676)
Q Consensus 237 ~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 316 (676)
+++||+|+||||||+++++ ++...+....++..+||.++++.+.+++...+.... ......+ ++.
T Consensus 7 ~~ilViDiGggTtDi~v~~--~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~~-------~~~~~~~------~~~ 71 (163)
T d2zgya2 7 DSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS-------SYLADDI------IIH 71 (163)
T ss_dssp CEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGG-------HHHHHHH------HHT
T ss_pred CCEEEEECCCCcEEEEEEc--CCeEEEEEeeccccccchHHHHHHHHhhHHhhchhh-------hhhHHHH------HHh
Confidence 4899999999999999864 555556666777899999999999887754332110 0000000 000
Q ss_pred HcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHH
Q 005807 317 ELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQE 396 (676)
Q Consensus 317 ~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~ 396 (676)
......+. ........++.+++++.+.++.+.+.+.+.+. ...+++.|+|+||+|+ .+++
T Consensus 72 ---~~~~~~~~-----------~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~----~~~~~~~iil~GGGs~--ll~~ 131 (163)
T d2zgya2 72 ---RKDNNYLK-----------QRINDENKISIVTEAMNEALRKLEQRVLNTLN----EFSGYTHVMVIGGGAE--LICD 131 (163)
T ss_dssp ---TTCHHHHH-----------HHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCEEEEESTTHH--HHHH
T ss_pred ---hccccccc-----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccccceEEEECchHH--HHHH
Confidence 00000000 00011224555666666666666666555554 3467899999999985 5999
Q ss_pred HHHHHhCCC---CCCCCCcchhHhhHHHHHh
Q 005807 397 IVTEIFGKS---PSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 397 ~l~~~fg~~---~~~~~~p~~aVa~GAal~a 424 (676)
.|++.|+.. +....||..|+|+|+.++|
T Consensus 132 ~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 132 AVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp HHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 999999743 5678899999999999876
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3.9e-13 Score=111.27 Aligned_cols=95 Identities=34% Similarity=0.509 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhccCChHHHHH
Q 005807 552 LSESEIEKMVKEAELHAQRDQERKTLIDIRNNADTTIYSIEKSLGEYREKIPGEVAKEIEDAVSDLRKAMAGEDIDGIKA 631 (676)
Q Consensus 552 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 631 (676)
||++||++|+++++.|+++|+.+|++.+++|.+|+|||.+++.|.++.+.+++++++.|...++++.+|+.++|.+.++.
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~~d~~~i~~ 80 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEA 80 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005807 632 KLDAANKAVSKIGQH 646 (676)
Q Consensus 632 ~~~~L~~~~~~i~~~ 646 (676)
+++.|+..+.++++.
T Consensus 81 ~~~~L~~~~~~l~e~ 95 (97)
T d1dkza1 81 KMQELAQVSQKLMEI 95 (97)
T ss_dssp HHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998754
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.46 E-value=5.6e-14 Score=132.71 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=111.3
Q ss_pred eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHH
Q 005807 238 LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIE 317 (676)
Q Consensus 238 ~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 317 (676)
.++|+|+|+||+|++++. ++.+... ....+||++|++.|.+.+.-. ...||+.|+.
T Consensus 8 Gv~vvDiG~~tt~i~i~~--~G~l~~~---~~i~~GG~~iT~~Ia~~l~i~-------------------~~~AE~iK~~ 63 (191)
T d1e4ft2 8 GVVVVNLGYNFTGLIAYK--NGVPIKI---SYVPVGMKHVIKDVSAVLDTS-------------------FEESERLIIT 63 (191)
T ss_dssp CEEEEEECSSCEEEEEEE--TTEEEEE---EEESCCHHHHHHHHHHHHTCC-------------------HHHHHHHHHH
T ss_pred CEEEEEeCCCcEEEEEEE--CCeEEEE---EEEeeChHHHHHHHHHHhccc-------------------HHHHHHHHhh
Confidence 689999999999999955 5544322 235799999999998765421 2579999998
Q ss_pred cCCCCc---eeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCC------cCCCcEEEEEcCC
Q 005807 318 LSSTSQ---TEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANIT------IKDVDEVLLVGGM 388 (676)
Q Consensus 318 Ls~~~~---~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~------~~~i~~ViLvGG~ 388 (676)
+..... ....++....+ ......+++..+.+++++.++++...+.+.++..... ...+..|+|+||+
T Consensus 64 ~g~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGg 139 (191)
T d1e4ft2 64 HGNAVYNDLKEEEIQYRGLD----GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGG 139 (191)
T ss_dssp HCCSCCTTCCCCEEEEECTT----SSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGG
T ss_pred ccccccccccchhccccccc----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecch
Confidence 754321 11122221111 2334578899999999999999998888888753211 1124569999999
Q ss_pred cCcHHHHHHHHHHhCCCCCC-----------------CCCcchhHhhHHHH
Q 005807 389 TRVPKVQEIVTEIFGKSPSK-----------------GVNPDEAVALGAAI 422 (676)
Q Consensus 389 s~~p~i~~~l~~~fg~~~~~-----------------~~~p~~aVa~GAal 422 (676)
|++|.|.+.+++.|+.++.. ..+|..++|.|.+|
T Consensus 140 s~l~gl~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 140 AKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GGSTTHHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred hhhhhHHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 99999999999999865310 13688899999885
|
| >d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=1.5e-12 Score=104.43 Aligned_cols=74 Identities=9% Similarity=0.161 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHh--hhhcCCCHHHHHHHHHHHHHHHHhhccC---ChHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005807 580 IRNNADTTIYSIEKSLG--EYREKIPGEVAKEIEDAVSDLRKAMAGE---DIDGIKAKLDAANKAVSKIGQHMAGGSSD 653 (676)
Q Consensus 580 ~~n~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~wl~~~---~~~~~~~~~~~L~~~~~~i~~~~~~~~~~ 653 (676)
..|+||+|||.+|+.|. .+.+++++++++.|.+.|+++++||+.+ +.++|++++++|+..+.||+.+||+.+|+
T Consensus 2 ~~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~~a~~ee~~~k~~eLe~~~~PI~~k~y~~~g~ 80 (84)
T d1ud0a_ 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGG 80 (84)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCC
T ss_pred chhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 47999999999999995 4678899999999999999999999876 38999999999999999999999985443
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.22 E-value=8.6e-12 Score=114.12 Aligned_cols=154 Identities=20% Similarity=0.155 Sum_probs=101.4
Q ss_pred CCCCeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHH
Q 005807 234 NKEGLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEK 313 (676)
Q Consensus 234 ~~~~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 313 (676)
++++++||+|+||||||++++...+..+ +...+.....|+.+++..+.+++..++.. ... . ...+.
T Consensus 3 ~~~g~~lviDIG~gTtDi~v~~~~~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~~----~~~--~-------~~~~~ 68 (161)
T d2fsja1 3 QQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGF----VVP--F-------DLAQE 68 (161)
T ss_dssp CCSSEEEEEEECSSCEEEEEEETTTTEE-CGGGCEEESCCHHHHHHHHHHHHHHHHCC----CCC--H-------HHHHH
T ss_pred cCCCcEEEEEcCcCeEEEEEEECCCeEE-EEEEeccHhHHHHHHHHHHHHHHHHHHHh----hhh--H-------HHHHH
Confidence 3445899999999999999987655544 22223346789999999999888877642 221 1 11111
Q ss_pred HHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHH
Q 005807 314 AKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPK 393 (676)
Q Consensus 314 ~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~ 393 (676)
+. .. .... . + . ... .++.+.+.++++++.+...+...+... ...++.|+|+||+|.+
T Consensus 69 ~~----~~-~~~~--~-------g-~--~~~-~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga~l-- 125 (161)
T d2fsja1 69 AL----SH-PVMF--R-------Q-K--QVG-GPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL-- 125 (161)
T ss_dssp HT----TS-CEEE--T-------T-E--EEC-SHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--
T ss_pred HH----hc-cccc--c-------c-c--cch-HHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHHHH--
Confidence 11 11 1110 0 0 1 111 245667777777777777777666542 2568999999999986
Q ss_pred HHHHHHHHhCCCC--CCCCCcchhHhhHHHHHh
Q 005807 394 VQEIVTEIFGKSP--SKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 394 i~~~l~~~fg~~~--~~~~~p~~aVa~GAal~a 424 (676)
+++.+++.|+... ..+.||..|.|.|--..|
T Consensus 126 l~~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 126 IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 7889999997543 346799999999987655
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.76 E-value=4.9e-07 Score=87.96 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=55.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHHHHhhh
Q 005807 352 TLVNHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 352 ~~~~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+++...++.+...+...+... .+.+.|+++||.++.+++++.+++.++.++..+.+|.++.|+|||++|..
T Consensus 185 ~i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~ 255 (259)
T d1huxa_ 185 DIIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYK 255 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHH
Confidence 334444444445554444432 34578999999999999999999999999999999999999999999874
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=7.6e-06 Score=77.87 Aligned_cols=166 Identities=18% Similarity=0.199 Sum_probs=95.8
Q ss_pred EEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHHc
Q 005807 239 IAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIEL 318 (676)
Q Consensus 239 vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 318 (676)
-||||+|.+.+.|+-+. +|.. +........+||.++++.|.++|..... +... .... ...+..|+.+
T Consensus 4 glVVDiG~~~t~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~l~~~L~~~~~-----~~~~-~~~~----~~~~~~ke~~ 70 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIY--EGYA-LPHAIMRLDLAGRDLTDYLMKILTERGY-----SFVT-TAER----EIVRDIKEKL 70 (225)
T ss_dssp EEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHTC-----CCCS-HHHH----HHHHHHHHHH
T ss_pred EEEEEcCCCcEEEEEEE--CCEE-chhceEEEECcHHHHHHHHHHHHhhccC-----CcCC-HHHH----HHHHHHHHHH
Confidence 48999999999988753 3321 1111223579999999999988865431 1111 1000 1123333333
Q ss_pred CC----------------CCceeeeccccccCCCCCeeeEEEEcHHHH---HHHHhHHH-----HHHHHHHHHHHHHcCC
Q 005807 319 SS----------------TSQTEINLPFITADASGAKHLNITLTRSKF---ETLVNHLI-----ERTKAPCKNCLKDANI 374 (676)
Q Consensus 319 s~----------------~~~~~~~i~~~~~~~~g~~~~~~~itr~~f---e~~~~~~v-----~~i~~~i~~~l~~~~~ 374 (676)
.. .......+| ....+.+..+.| |-+|+|.. ..+.+.|.+++..+..
T Consensus 71 ~~~~~d~~~e~~~~~~~~~~~~~~~lp---------dg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~ 141 (225)
T d2fxua2 71 CYVALDFENEMATAASSSSLEKSYELP---------DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDI 141 (225)
T ss_dssp CCCCSSHHHHHHHHHHCSTTCEEEECT---------TSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCH
T ss_pred hhcccchhHHHhhcccCcccceeEECC---------CCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCc
Confidence 22 222222222 123455665544 22333321 1355556666655432
Q ss_pred C--cCCCcEEEEEcCCcCcHHHHHHHHHHhC--------CCCCCCCCcchhHhhHHHHHhhh
Q 005807 375 T--IKDVDEVLLVGGMTRVPKVQEIVTEIFG--------KSPSKGVNPDEAVALGAAIQGGI 426 (676)
Q Consensus 375 ~--~~~i~~ViLvGG~s~~p~i~~~l~~~fg--------~~~~~~~~p~~aVa~GAal~a~~ 426 (676)
+ ..-...|+|+||+|.+|.+.++|.+.+. ..+..+.++..++=.|++++|..
T Consensus 142 d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 142 DIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp HHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred chhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 1 1124799999999999999999987651 22344567788999999999874
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.89 E-value=2.6e-05 Score=75.72 Aligned_cols=172 Identities=14% Similarity=0.158 Sum_probs=98.4
Q ss_pred eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHH
Q 005807 238 LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIE 317 (676)
Q Consensus 238 ~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 317 (676)
+=+|||+|.+.++++-+. +|... .......++||.+++..|.++|.+. +........ ...++..|+.
T Consensus 4 TGlVVDiG~~~T~v~PV~--eG~~l-~~~~~~~~~GG~~lt~~L~~~L~~~-----~~~~~~~~~-----~~~~~~~ke~ 70 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVA--EGYVI-GSCIKHIPIAGRDITYFIQQLLRDR-----EVGIPPEQS-----LETAKAVKER 70 (258)
T ss_dssp CEEEEEESSSCEEEEEEE--TTEEC-GGGCEEESCSHHHHHHHHHHHHHTT-----CCCCCGGGH-----HHHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEE--CCEEc-hhheEEEeCcHHHHHHHHHHHHHHc-----CCCCCcHHH-----HHHHHhHHhh
Confidence 348999999999998753 33211 1111226799999999998887642 111111000 1223333333
Q ss_pred cCCCC-----------------ceeeeccccccCCCCCeeeEEEEcHHHHH---HHHhHH------HHHHHHHHHHHHHH
Q 005807 318 LSSTS-----------------QTEINLPFITADASGAKHLNITLTRSKFE---TLVNHL------IERTKAPCKNCLKD 371 (676)
Q Consensus 318 Ls~~~-----------------~~~~~i~~~~~~~~g~~~~~~~itr~~fe---~~~~~~------v~~i~~~i~~~l~~ 371 (676)
+.... ......+.. .......+.+..+.|. -++.|- ...+.+.|.+++..
T Consensus 71 ~~~v~~d~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~ 146 (258)
T d1k8ka2 71 YSYVCPDLVKEFNKYDTDGSKWIKQYTGINA----ISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQN 146 (258)
T ss_dssp HCCCCSCHHHHHHHHHHSGGGTCEEEEEECT----TTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHH
T ss_pred hcccccchHHHHHhhcccccccccccccccc----cCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHh
Confidence 32211 011111111 1113456677666652 222221 12466777888887
Q ss_pred cCCCcCC--CcEEEEEcCCcCcHHHHHHHHHHhC------------------------CCCCCCCCcchhHhhHHHHHhh
Q 005807 372 ANITIKD--VDEVLLVGGMTRVPKVQEIVTEIFG------------------------KSPSKGVNPDEAVALGAAIQGG 425 (676)
Q Consensus 372 ~~~~~~~--i~~ViLvGG~s~~p~i~~~l~~~fg------------------------~~~~~~~~p~~aVa~GAal~a~ 425 (676)
+..+... ...|+|+||+|.+|.+.++|...+. .++..+.++..++=.||+++|.
T Consensus 147 ~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 147 CPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp SCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred ccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 6543322 5789999999999999998865551 1222344677888899999887
Q ss_pred h
Q 005807 426 I 426 (676)
Q Consensus 426 ~ 426 (676)
.
T Consensus 227 l 227 (258)
T d1k8ka2 227 T 227 (258)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.68 E-value=0.00018 Score=62.28 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=86.8
Q ss_pred eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHHHHHHHHHH
Q 005807 238 LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRESAEKAKIE 317 (676)
Q Consensus 238 ~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 317 (676)
...|+|+||||+|.+++.-++...-+ .-+| .|+-++..+...|- ++ + +..+|.+|+-
T Consensus 5 plaIlDlG~GStDasii~~~g~v~av-hlAG----AG~mVTmlI~~eLG--------l~---d-------~~lAE~IKky 61 (202)
T d1nbwa3 5 PLAILDLGAGSTDAAIVNAEGQITAV-HLAG----AGNMVSLLIKTELG--------LE---D-------LSLAEAIKKY 61 (202)
T ss_dssp SEEEEEECSSEEEEEEECSSSCEEEE-EEEC----CHHHHHHHHHHHHT--------CS---C-------HHHHHHHHHS
T ss_pred ceEEEEcCCCccchhhccCCCcEEEE-EecC----CchhhHHHHHHHhC--------CC---c-------HHHHHHHhhc
Confidence 46899999999999998755543322 2222 36666665544321 11 0 1346777763
Q ss_pred cCC-----------CCceeeeccccccC---------CCCCeeeEEEEcHHHHHHHHhHHHHHH-HHHHHHHHHHcC--C
Q 005807 318 LSS-----------TSQTEINLPFITAD---------ASGAKHLNITLTRSKFETLVNHLIERT-KAPCKNCLKDAN--I 374 (676)
Q Consensus 318 Ls~-----------~~~~~~~i~~~~~~---------~~g~~~~~~~itr~~fe~~~~~~v~~i-~~~i~~~l~~~~--~ 374 (676)
--. +....+.-+-+... .++...+.-.++-+++..+=...=+++ ..-+.++|+... -
T Consensus 62 PlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vsp~g 141 (202)
T d1nbwa3 62 PLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPGG 141 (202)
T ss_dssp CEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSSTTC
T ss_pred chhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcCCCC
Confidence 110 01111110001000 011122223344444443333222222 122344454432 2
Q ss_pred CcCCCcEEEEEcCCcCcHHHHHHHHHHhCC--------CCCCCCCcchhHhhHHHHH
Q 005807 375 TIKDVDEVLLVGGMTRVPKVQEIVTEIFGK--------SPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 375 ~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~~~~~~~p~~aVa~GAal~ 423 (676)
+..+|..|+||||++.=--|-+++.+.+.. .+.-..-|..|||.|.++.
T Consensus 142 nir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 142 SIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 346799999999999888888888887721 2334567999999999863
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.55 E-value=7.9e-05 Score=68.54 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=80.4
Q ss_pred EEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHHHHHHHHHhhhhccCCCccCHHHHHHHHH---------H
Q 005807 240 AVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNALLEFLVSEFKRTERIDLSQDKLALQRLRE---------S 310 (676)
Q Consensus 240 lV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~---------~ 310 (676)
||+|+|.+.+.++-+. +|... ........+||.++++.|.+.+.+.-. ......+......+.. .
T Consensus 2 lVVDiG~~~T~v~PV~--dG~~l-~~a~~~~~igG~~lt~~l~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~v~~~~~ 75 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EGFSL-PHLTRRLDIAGRDITRYLIKLLLLRGY---AFNHSADFETVRMIKEKLCYVGYNIE 75 (190)
T ss_dssp CEEEECSSCEEEECEE--TTEEC-STTCEEESCCHHHHHHHHHHHHHHTTC---CCCTTTTHHHHHHHHHHHCCCCSSHH
T ss_pred EEEEcCCCcEEEEEeE--CCEEc-ccceEEEeccHHHHHHHHHHHHHhcCC---cccchHHHHHHHHHHhhhhhhcccHH
Confidence 6999999999988643 33211 111122579999999998887764321 1111111111111110 0
Q ss_pred HHHHHHHcCCCCceeeeccccccCCCCCeeeEEEEcHHHHHHHHhHHHH---------HHHHHHHHHHHHcCCCcC--CC
Q 005807 311 AEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFETLVNHLIE---------RTKAPCKNCLKDANITIK--DV 379 (676)
Q Consensus 311 ~e~~K~~Ls~~~~~~~~i~~~~~~~~g~~~~~~~itr~~fe~~~~~~v~---------~i~~~i~~~l~~~~~~~~--~i 379 (676)
.+..+...+........+| ....+.+..+.|. ..+.+++ .+.+.|.+++..+..+.. -.
T Consensus 76 ~e~~~~~~~~~~~~~~~lp---------dg~~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~ 145 (190)
T d1k8kb1 76 QEQKLALETTVLVESYTLP---------DGRIIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFY 145 (190)
T ss_dssp HHHHHHHHCSTTCEEEECT---------TSCEEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHH
T ss_pred HHHHhhhcccceeeeeecC---------CCcEEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHH
Confidence 1111111222222222222 1234666766653 2232332 266777888887654322 25
Q ss_pred cEEEEEcCCcCcHHHHHHHHHHh
Q 005807 380 DEVLLVGGMTRVPKVQEIVTEIF 402 (676)
Q Consensus 380 ~~ViLvGG~s~~p~i~~~l~~~f 402 (676)
..|+|+||+|.+|.+.++|+..+
T Consensus 146 ~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 146 KHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp TTCEEESGGGCSTTHHHHHHHHH
T ss_pred cCEEEECcccCCCCHHHHHHHHH
Confidence 89999999999999999998766
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.53 E-value=0.00017 Score=62.30 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=44.4
Q ss_pred HHHHHHHHcC--CCcCCCcEEEEEcCCcCcHHHHHHHHHHhCC--------CCCCCCCcchhHhhHHHHH
Q 005807 364 PCKNCLKDAN--ITIKDVDEVLLVGGMTRVPKVQEIVTEIFGK--------SPSKGVNPDEAVALGAAIQ 423 (676)
Q Consensus 364 ~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~--------~~~~~~~p~~aVa~GAal~ 423 (676)
-+.++|+... -+..+|..|+||||++.=--|-+++.+.+.. .+.-..-|..|||.|.++.
T Consensus 129 Na~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 129 NALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp HHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 3445555532 3346799999999999988899999998842 2333567999999999874
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=96.54 E-value=0.0023 Score=60.40 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=57.2
Q ss_pred EEEcHHHHHHHH-hHHHHHHHHHHHHHHHHcCCCcCCCcEEEEEcCCcCcHHHHHHHHHHhCCCCCCCCCcchhHhhHHH
Q 005807 343 ITLTRSKFETLV-NHLIERTKAPCKNCLKDANITIKDVDEVLLVGGMTRVPKVQEIVTEIFGKSPSKGVNPDEAVALGAA 421 (676)
Q Consensus 343 ~~itr~~fe~~~-~~~v~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~i~~~l~~~fg~~~~~~~~p~~aVa~GAa 421 (676)
..-+|.+|-..+ +.+.-.+...++..-+..+. .++.|.+.||.++++.+.+.+.+.+|.++....++ ++.++|||
T Consensus 114 ~~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~---~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGaA 189 (235)
T d1r59o2 114 RGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGAA 189 (235)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHHH
Confidence 334566554332 22222333333322233453 46899999999999999999999999977665555 58899999
Q ss_pred HHhhhccCCC
Q 005807 422 IQGGILRGDV 431 (676)
Q Consensus 422 l~a~~l~~~~ 431 (676)
+.|+.-.+..
T Consensus 190 ~la~~~~G~~ 199 (235)
T d1r59o2 190 YLAGLAVGFW 199 (235)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHcCCC
Confidence 9999766643
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.33 E-value=0.011 Score=50.64 Aligned_cols=64 Identities=8% Similarity=-0.033 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC--CeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEeeChhHHHHHhcc
Q 005807 165 QIGAFVLTKMKETAESYLGKSV--SEAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAAALSYG 231 (676)
Q Consensus 165 ev~a~~L~~l~~~a~~~l~~~~--~~~VITVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~ 231 (676)
+....++.++.. ..++... ..++||-|...+...|+.+.+. .+..+++.+.+...|..+++++|
T Consensus 74 d~~e~~~~~~~~---~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 74 DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHhhh---hhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 445555555543 2344333 3599999999999999998776 57789999999999999998765
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.022 Score=52.26 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCCcEEEEEcCCcCcHHHHHHHHH----Hh---CCCCCCCCCcchhHhhHHHHHh
Q 005807 377 KDVDEVLLVGGMTRVPKVQEIVTE----IF---GKSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 377 ~~i~~ViLvGG~s~~p~i~~~l~~----~f---g~~~~~~~~p~~aVa~GAal~a 424 (676)
..++.|+++||.+..-.+++.+.+ ++ +.++..+.|...+.|.||++.-
T Consensus 156 ~~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 156 ENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp HTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred cCCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 346899999998877666666543 34 3456667889999999998753
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.78 E-value=0.034 Score=48.44 Aligned_cols=48 Identities=13% Similarity=-0.018 Sum_probs=41.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHH-HHHcCCCeEEeeChhHHHHHhccccC
Q 005807 187 SEAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAAALSYGMNN 234 (676)
Q Consensus 187 ~~~VITVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~ 234 (676)
..++||-|...+..+|+.+.+. .+..+++.+.+...|..++++++...
T Consensus 106 ~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~ 154 (158)
T d1k8ka1 106 HYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSR 154 (158)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGST
T ss_pred CceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCC
Confidence 4699999999999999988665 57789999999999999999887543
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=94.16 E-value=1.5 Score=41.69 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=19.0
Q ss_pred CceEEEEcCCceEEEEEEECCce
Q 005807 53 NDVIGVDLGTTNSCVAVMEGKNP 75 (676)
Q Consensus 53 ~~vvGID~GTt~s~va~~~~~~~ 75 (676)
++.++||+|-|++++++++....
T Consensus 1 ~y~L~~DIGGT~ir~glvd~~~~ 23 (319)
T d1sz2a1 1 KYALVGDVGGTNARLALCDIASG 23 (319)
T ss_dssp CEEEEEEEETTEEEEEEEETTTC
T ss_pred CEEEEEEEChhheeeEEEECCCC
Confidence 36799999999999999875443
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=92.94 E-value=0.25 Score=44.13 Aligned_cols=32 Identities=3% Similarity=-0.256 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEeeChhHHHHHhc
Q 005807 199 DAQRQATKDAGRIAGLDVQRIINEPTAAALSY 230 (676)
Q Consensus 199 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y 230 (676)
....+.+.++.+.+|+++..++.+|.|+|.+.
T Consensus 161 ~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 161 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 45688899999999999999999999999764
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=92.34 E-value=0.14 Score=47.75 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=38.7
Q ss_pred CCcEEEEEcCC-cCcHHHHHHHHHHhC---CCCCCCCCcchhHhhHHHHHh
Q 005807 378 DVDEVLLVGGM-TRVPKVQEIVTEIFG---KSPSKGVNPDEAVALGAAIQG 424 (676)
Q Consensus 378 ~i~~ViLvGG~-s~~p~i~~~l~~~fg---~~~~~~~~p~~aVa~GAal~a 424 (676)
++..|++.||. +..|.+++.+++++. .++..+.+++.+-|+|||+++
T Consensus 216 ~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 216 KTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp TCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 34789999885 679999999999883 456667889999999999875
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.32 E-value=0.033 Score=48.83 Aligned_cols=43 Identities=21% Similarity=0.057 Sum_probs=31.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHc--------C------CCeEEeeChhHHHHHhc
Q 005807 188 EAVITVPAYFNDAQRQATKDAGRIA--------G------LDVQRIINEPTAAALSY 230 (676)
Q Consensus 188 ~~VITVPa~~~~~qr~~l~~Aa~~A--------G------l~~~~li~Ep~AAal~y 230 (676)
.+|...|..+...+++++++....- | +..+.+++||.+|.+++
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~~~ 159 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYL 159 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHHHH
Confidence 3688899998888899998876421 1 13456789999988743
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=92.21 E-value=0.059 Score=43.81 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=28.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCCeEEeeChhHHHHHh
Q 005807 188 EAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAAALS 229 (676)
Q Consensus 188 ~~VITVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~ 229 (676)
.+.+.+|.......+..+.... -.+..+.+.|+-.||++.
T Consensus 71 ~~~~g~aG~~~~~~~~~l~~~~--~~~~~v~v~nDa~~A~~g 110 (114)
T d1zc6a1 71 AIGLGLSGVHNRQWAGEFESQA--PGFARLSLATDGYTTLLG 110 (114)
T ss_dssp EEEEEESCCCTTSHHHHHHHTC--CCCSEEEEECHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHHHHhC--CCCCeEEEECHHHHHHHH
Confidence 3567888877776666665432 234578999999999885
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=2 Score=34.44 Aligned_cols=45 Identities=7% Similarity=-0.018 Sum_probs=34.6
Q ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHc--CC-CeEEeeChhHHHHH
Q 005807 184 KSVSEAVITVPAYFNDAQRQATKDAGRIA--GL-DVQRIINEPTAAAL 228 (676)
Q Consensus 184 ~~~~~~VITVPa~~~~~qr~~l~~Aa~~A--Gl-~~~~li~Ep~AAal 228 (676)
.++..+++.++..=.+..++.+.++.... ++ ..+.+.++..+|..
T Consensus 66 ~~i~~i~~GlAG~~~~~~~~~l~~~l~~~~~~~~~~v~v~nDa~~Al~ 113 (117)
T d2ch5a2 66 VPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIA 113 (117)
T ss_dssp CCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHH
T ss_pred ccccEEEEEeeccCcchhHHHHHHHHHHHCCCCCceEEEeccHHHHHh
Confidence 35678899999977888888888887665 55 45778888877754
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=84.45 E-value=0.27 Score=43.43 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=27.8
Q ss_pred CeEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 237 GLIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 237 ~~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
+.++|+|+|||++.+++++ ++.+.. ....++|.-.+.+.+
T Consensus 3 ~~~lviDIGGGStEli~~~--~~~i~~---~~Sl~lG~vrl~e~f 42 (180)
T d1t6ca2 3 GEVCVVDQGGGSTEYVFGK--GYKVRE---VISLPIGIVNLTETF 42 (180)
T ss_dssp SEEEEEEEETTEEEEEEEE--TTEEEE---EEEECCCHHHHHHHH
T ss_pred CCEEEEEeCCChHhhEEee--CCceee---EEEeecceEEeeccc
Confidence 4789999999999999864 443322 123578887766554
|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=81.11 E-value=0.43 Score=41.69 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=27.0
Q ss_pred eEEEEeeCCceeEEEEEEEeCCeEEEEEecCCCCcchHHHHHHH
Q 005807 238 LIAVFDLGGGTFDVSVLEISNGVFEVKATNGDTFLGGEDFDNAL 281 (676)
Q Consensus 238 ~vlV~D~GgGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 281 (676)
..||+|+|||++.++++ .++.+.- ....++|.-.+.+.+
T Consensus 3 r~Lv~DIGGGStEl~~~--~~~~~~~---~~Sl~lG~vrl~e~~ 41 (177)
T d1u6za3 3 RKLVIDIGGGSTELVIG--ENFEPIL---VESRRMGCVSFAQLY 41 (177)
T ss_dssp CEEEEEECSSCEEEEEE--ETTEEEE---EEEESCCHHHHHHHH
T ss_pred CEEEEEeCCChhheEEE--ECCcEeE---EEEeccceEEeeccc
Confidence 67999999999999975 4544322 123678887765544
|